Citrus Sinensis ID: 018638
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | 2.2.26 [Sep-21-2011] | |||||||
| Q9AT00 | 345 | Protein TRIGALACTOSYLDIAC | yes | no | 0.866 | 0.884 | 0.799 | 1e-142 | |
| P30769 | 347 | Probable ribonucleotide t | yes | no | 0.693 | 0.703 | 0.357 | 3e-38 | |
| P63357 | 359 | Probable ribonucleotide t | yes | no | 0.693 | 0.679 | 0.361 | 3e-38 | |
| P63358 | 359 | Probable ribonucleotide t | yes | no | 0.693 | 0.679 | 0.361 | 3e-38 | |
| O34900 | 259 | L-cystine import ATP-bind | yes | no | 0.664 | 0.903 | 0.368 | 7e-35 | |
| P14788 | 344 | Sulfate/thiosulfate impor | no | no | 0.664 | 0.680 | 0.355 | 1e-33 | |
| Q9K876 | 357 | Sulfate/thiosulfate impor | yes | no | 0.653 | 0.644 | 0.374 | 2e-33 | |
| Q89UD2 | 344 | Sulfate/thiosulfate impor | no | no | 0.673 | 0.688 | 0.367 | 3e-33 | |
| Q9G4F5 | 350 | Sulfate/thiosulfate impor | N/A | no | 0.625 | 0.628 | 0.358 | 2e-32 | |
| Q609Q1 | 348 | Sulfate/thiosulfate impor | no | no | 0.653 | 0.660 | 0.366 | 3e-32 |
| >sp|Q9AT00|AB13I_ARATH Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 503 bits (1296), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/309 (79%), Positives = 276/309 (89%), Gaps = 4/309 (1%)
Query: 45 QRKVVCACVAPPRDLGTDGFPATKFNDSSKSEN-VNTLFEPEDDGDVLIDCRNVYKSFGE 103
+RKV C C+APP++L D ATKF+ +KS + E+D DVLI+CR+VYKSFGE
Sbjct: 40 RRKVSCCCIAPPQNLDND---ATKFDSLTKSGGGMCKERGLENDSDVLIECRDVYKSFGE 96
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
KHIL+GVSFKIRHGEAVG+IGPSGTGKSTILKI+AGLLAPDKGEVYIRG+KRAGLISDEE
Sbjct: 97 KHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEE 156
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
ISGLRIGLVFQSAALFDSL+VRENVGFLLYE SKM + QISELV + LAAVGLKGVE+RL
Sbjct: 157 ISGLRIGLVFQSAALFDSLSVRENVGFLLYERSKMSENQISELVTQTLAAVGLKGVENRL 216
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
PSELSGGMKKRVALARS+IFD TKE +EPEVLLYDEPTAGLDPIASTVVEDLIRSVH
Sbjct: 217 PSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMTD 276
Query: 284 ENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 343
E+ + PG IASY+VVTHQHSTI+RAVDRL+FLYEGKIVWQGMTHEFT+S+NPIVQQFA+
Sbjct: 277 EDAVGKPGKIASYLVVTHQHSTIQRAVDRLLFLYEGKIVWQGMTHEFTTSTNPIVQQFAT 336
Query: 344 GSLEGPIRY 352
GSL+GPIRY
Sbjct: 337 GSLDGPIRY 345
|
ATPase transporter involved in lipid transfer from the endoplasmic reticulum (ER) to plastids, and necessary for thylakoids formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|P30769|MKL_MYCLE Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium leprae (strain TN) GN=mkl PE=3 SV=2 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 145/263 (55%), Gaps = 19/263 (7%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V I+ + + KSFG I V+ I GE ++GPSGTGKS LK + GLL P++G +
Sbjct: 14 VAIEVKGLTKSFGSSRIWEDVTLDIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSIL 73
Query: 150 IRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + E EI L G++FQ ALF S+ + +N F L E++K ++ +I ++V
Sbjct: 74 IDGTDIIECSAKELYEIRTL-FGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIV 132
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E L VGL G E + P E+SGGM+KR LAR+++ D P+++L DEP +GLDP+
Sbjct: 133 MEKLQLVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPV 185
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
+ + LI ++ + + A+ ++VTH + R D + L+ +V G
Sbjct: 186 RTAYLSQLIMDINAQID---------ATILIVTHNVNIARTVPDNMGMLFRKHLVMFGPR 236
Query: 328 HEFTSSSNPIVQQFASGSLEGPI 350
+S P+V+QF +G GPI
Sbjct: 237 EVLLTSDEPVVRQFLNGRRIGPI 259
|
Not known, could be involved in the transport of ribonucleotides. Mycobacterium leprae (taxid: 1769) |
| >sp|P63357|MKL_MYCTU Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium tuberculosis GN=mkl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 145/263 (55%), Gaps = 19/263 (7%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V I+ + KSFG I V+ I GE ++GPSGTGKS LK + GLL P++G +
Sbjct: 26 VSIEVNGLTKSFGSSRIWEDVTLTIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSII 85
Query: 150 IRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + E EI L G++FQ ALF S+ + +N F L E++K ++ +I ++V
Sbjct: 86 IDGTDIIECSAKELYEIRTL-FGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIV 144
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E LA VGL G E + P E+SGGM+KR LAR+++ D P+++L DEP +GLDP+
Sbjct: 145 MEKLALVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPV 197
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
+ + LI ++ + + A+ ++VTH + R D + L+ +V G
Sbjct: 198 RTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGMLFRKHLVMFGPR 248
Query: 328 HEFTSSSNPIVQQFASGSLEGPI 350
+S P+V+QF +G GPI
Sbjct: 249 EVLLTSDEPVVRQFLNGRRIGPI 271
|
Not known, could be involved in the transport of ribonucleotides. Mycobacterium tuberculosis (taxid: 1773) |
| >sp|P63358|MKL_MYCBO Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=mkl PE=3 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 145/263 (55%), Gaps = 19/263 (7%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V I+ + KSFG I V+ I GE ++GPSGTGKS LK + GLL P++G +
Sbjct: 26 VSIEVNGLTKSFGSSRIWEDVTLTIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSII 85
Query: 150 IRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + E EI L G++FQ ALF S+ + +N F L E++K ++ +I ++V
Sbjct: 86 IDGTDIIECSAKELYEIRTL-FGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIV 144
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E LA VGL G E + P E+SGGM+KR LAR+++ D P+++L DEP +GLDP+
Sbjct: 145 MEKLALVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPV 197
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
+ + LI ++ + + A+ ++VTH + R D + L+ +V G
Sbjct: 198 RTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGMLFRKHLVMFGPR 248
Query: 328 HEFTSSSNPIVQQFASGSLEGPI 350
+S P+V+QF +G GPI
Sbjct: 249 EVLLTSDEPVVRQFLNGRRIGPI 271
|
Not known, could be involved in the transport of ribonucleotides. Mycobacterium bovis (taxid: 1765) |
| >sp|O34900|TCYN_BACSU L-cystine import ATP-binding protein TcyN OS=Bacillus subtilis (strain 168) GN=tcyN PE=1 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 141/255 (55%), Gaps = 21/255 (8%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ +N++K FG H+L+G++ +R GE V IIGPSG+GK+T L+ + L PD+G + I
Sbjct: 1 MIEIKNIHKQFGIHHVLKGINLTVRKGEVVTIIGPSGSGKTTFLRCLNLLERPDEGIISI 60
Query: 151 RGRK-RAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
+ S +E+ LR +VFQ LF TV ENV L KMR + +
Sbjct: 61 HDKVINCRFPSKKEVHWLRKQTAMVFQQYHLFAHKTVIENVMEGLTIARKMRKQDAYAVA 120
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
+ L VGL+ + PS+LSGG K+RV +AR++ ++ P+VLL+DEPTA LDP
Sbjct: 121 ENELRKVGLQDKLNAYPSQLSGGQKQRVGIARAL-------AIHPDVLLFDEPTAALDPE 173
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
V +++ + K G A+ +VVTH+ RR D+++F+ EG IV QG
Sbjct: 174 LVGEVLEVMLEIVKTG----------ATMIVVTHEMEFARRVSDQVVFMDEGVIVEQGTP 223
Query: 328 HE-FTSSSNPIVQQF 341
E F + +QF
Sbjct: 224 EEVFRHTKKDRTRQF 238
|
Part of the ABC transporter complex TcyJKLMN involved in L-cystine import. Responsible for energy coupling to the transport system (Probable). Is also involved in cystathionine, djenkolate, and S-methylcysteine transport. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P14788|CYSA_SYNE7 Sulfate/thiosulfate import ATP-binding protein CysA OS=Synechococcus elongatus (strain PCC 7942) GN=cysA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 134/256 (52%), Gaps = 22/256 (8%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
D V I V K FG ++ V + G V ++GPSG+GKST+L++IAGL PD G
Sbjct: 4 DKAVGIQVSQVSKQFGSFQAVKDVDLTVETGSLVALLGPSGSGKSTLLRLIAGLEQPDSG 63
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+++ GR ++E + +IG VFQ ALF LTVR+N+ F L E K E++
Sbjct: 64 RIFLTGRD----ATNESVRDRQIGFVFQHYALFKHLTVRKNIAFGL-ELRKHTKEKVRAR 118
Query: 207 VKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
V+E L V L G+ DR PS+LSGG ++RVALAR++ +V+P+VLL DEP LD
Sbjct: 119 VEELLELVQLTGLGDRYPSQLSGGQRQRVALARAL-------AVQPQVLLLDEPFGALDA 171
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326
+ +R +H + + V VTH D+++ + GK+ G
Sbjct: 172 KVRKDLRSWLRKLHDEVH---------VTTVFVTHDQEEAMEVADQIVVMNHGKVEQIGS 222
Query: 327 THE-FTSSSNPIVQQF 341
E + + + P V F
Sbjct: 223 PAEIYDNPATPFVMSF 238
|
Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 5 |
| >sp|Q9K876|CYSA_BACHD Sulfate/thiosulfate import ATP-binding protein CysA OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=cysA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 145/254 (57%), Gaps = 24/254 (9%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I +NV KSFG L ++ I GE V ++GPSG+GK+++L+IIAGL A D+G++Y
Sbjct: 3 IVIQNVSKSFGSFQALADINLSIETGELVALLGPSGSGKTSLLRIIAGLEAADQGDIYFH 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF-LLYENSKMR--DEQISELVK 208
K ++ + ++G VFQ ALF +TV +N+ + L + K R ++I+E V+
Sbjct: 63 KDK----VTQTHAASRQVGFVFQHYALFPHMTVADNISYGLRVKPRKERPSKKEIAEKVR 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E LA V L+G++DR P++LSGG ++R+ALAR++ +VEP+VLL DEP LD
Sbjct: 119 ELLALVKLEGMDDRYPAQLSGGQRQRIALARAL-------AVEPKVLLLDEPFGALD--- 168
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
+ V +DL + + K L N + S V VTH DR++ + +GKI G
Sbjct: 169 AKVRKDLRKWLRK-----LHNEFQVTS-VFVTHDQEEALDVSDRVVVMNQGKIEQVGSPD 222
Query: 329 E-FTSSSNPIVQQF 341
E + +P V F
Sbjct: 223 EVYEQPKSPFVYDF 236
|
Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 5 |
| >sp|Q89UD2|CYSA_BRAJA Sulfate/thiosulfate import ATP-binding protein CysA OS=Bradyrhizobium japonicum (strain USDA 110) GN=cysA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 142/267 (53%), Gaps = 30/267 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ RN+ K FG L GV+ K+ +GE + ++GPSG+GK+T+L+IIAGL PD GEV
Sbjct: 3 IEVRNLVKKFGSFAALDGVNLKVDNGELLALLGPSGSGKTTLLRIIAGLDWPDSGEVSFN 62
Query: 152 GRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGF-LLYENSKMRDEQ--ISE 205
G D G R +G VFQ ALF +TV ENV F L + +R E+ I
Sbjct: 63 G-------EDALAQGARERHVGFVFQHYALFRHMTVFENVAFGLRVQPRAVRKEEARIRA 115
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
VKE L V L + DR PS+LSGG ++R+ALAR++ ++EP +LL DEP LD
Sbjct: 116 RVKELLDLVQLDWLADRYPSQLSGGQRQRIALARAL-------AIEPRILLLDEPFGALD 168
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ +RS+H + N+ S + VTH +R++ + +G+I G
Sbjct: 169 AKVRKELRKWLRSLHHE--------INVTS-IFVTHDQEEALEVANRVVVMDKGRIEQIG 219
Query: 326 MTHE-FTSSSNPIVQQFASGSLEGPIR 351
+ + S + V F S+E P+R
Sbjct: 220 SPEDVYESPATAFVHGFIGESIELPVR 246
|
Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 5 |
| >sp|Q9G4F5|CYSA_CUCSA Sulfate/thiosulfate import ATP-binding protein cysA OS=Cucumis sativus GN=CYSA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 130/251 (51%), Gaps = 31/251 (12%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ RN+ K FG+ L VS I GE V ++GPSG GK+T+L+IIAGL + D G V
Sbjct: 3 IEVRNLSKRFGQFRALNDVSLHIETGELVALLGPSGCGKTTLLRIIAGLESADNGSVLFA 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL---YENSKMRDEQISELVK 208
G + ++ ++G VFQ ALF +TV ENV F L + + + ++QI V
Sbjct: 63 GEDATSV----DVRQRQVGFVFQHYALFKHMTVFENVAFGLRVKHRSQRPSEDQIQRKVH 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
+ L V L + DR P++LSGG ++R+ALAR++ +VEP VLL DEP LD
Sbjct: 119 DLLGLVQLDWLADRYPAQLSGGQRQRIALARAL-------AVEPRVLLLDEPFGALDAKV 171
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI------- 321
+ +R +H + N+AS V VTH DR++ + G+I
Sbjct: 172 RKELRRWLRRLH--------DELNVAS-VFVTHDQEEALEVADRVVLMNAGRIEQVGTPR 222
Query: 322 -VWQGMTHEFT 331
VW+G F
Sbjct: 223 EVWEGPATPFV 233
|
Part of the ABC transporter complex involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. Cucumis sativus (taxid: 3659) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 5 |
| >sp|Q609Q1|CYSA_METCA Sulfate/thiosulfate import ATP-binding protein CysA OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=cysA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 135/254 (53%), Gaps = 24/254 (9%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ RN+ KSFG L+G+ I GE V ++GPSG GK+T+L+IIAGL A D G++ +
Sbjct: 3 IEIRNITKSFGSFQALKGIDLTIGSGELVALLGPSGCGKTTLLRIIAGLEAADSGQILLH 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR---DEQISELVK 208
G + + R+G VFQ ALF ++V EN+ F L + + + +I V+
Sbjct: 63 GED----TTHRHVRERRVGFVFQHYALFRHMSVFENIAFGLRVRPRGQRPPEAEIRRRVQ 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E L V L + DR P +LSGG ++R+ALAR++ +VEP+VLL DEP LD
Sbjct: 119 ELLELVQLDWLADRHPGQLSGGQRQRIALARAL-------AVEPKVLLLDEPFGALDAKV 171
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
+ +R +H +GL +I S V VTH DR++ L G+I G
Sbjct: 172 RKDLRRWLRRLH----DGL----HITS-VFVTHDQEEALEVADRVVVLNAGQIEQVGSAD 222
Query: 329 E-FTSSSNPIVQQF 341
E + + P V QF
Sbjct: 223 EVYDHPATPFVCQF 236
|
Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 2 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | ||||||
| 255543114 | 357 | abc transporter, putative [Ricinus commu | 0.994 | 0.980 | 0.788 | 1e-159 | |
| 449449615 | 348 | PREDICTED: protein TRIGALACTOSYLDIACYLGL | 0.985 | 0.997 | 0.756 | 1e-149 | |
| 357507681 | 346 | ABC transporter [Medicago truncatula] gi | 0.982 | 1.0 | 0.747 | 1e-147 | |
| 363807172 | 345 | uncharacterized protein LOC100783283 [Gl | 0.971 | 0.991 | 0.735 | 1e-147 | |
| 356531918 | 345 | PREDICTED: protein TRIGALACTOSYLDIACYLGL | 0.971 | 0.991 | 0.740 | 1e-147 | |
| 297735294 | 337 | unnamed protein product [Vitis vinifera] | 0.931 | 0.973 | 0.781 | 1e-146 | |
| 225431009 | 341 | PREDICTED: protein TRIGALACTOSYLDIACYLGL | 0.931 | 0.961 | 0.777 | 1e-146 | |
| 89357201 | 349 | ABC transporter II-like protein [Gossypi | 0.982 | 0.991 | 0.752 | 1e-145 | |
| 297838071 | 338 | ATNAP11 [Arabidopsis lyrata subsp. lyrat | 0.866 | 0.902 | 0.802 | 1e-141 | |
| 18408274 | 345 | protein triGALACTOSYLDIACYLGLYCEROL 3 [A | 0.866 | 0.884 | 0.799 | 1e-140 |
| >gi|255543114|ref|XP_002512620.1| abc transporter, putative [Ricinus communis] gi|223548581|gb|EEF50072.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 279/354 (78%), Positives = 313/354 (88%), Gaps = 4/354 (1%)
Query: 1 MVSLSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLG 60
MVSLS GS LFP + S+R + + +NSF YK ++EQRKVVC+C+APPR++
Sbjct: 6 MVSLS--GSTLFPASIAHGSTRFTRFSVWSADTVNSFCYKQRKEQRKVVCSCMAPPRNIS 63
Query: 61 TDGFPATKFNDSSKSENVNTLFEPED--DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGE 118
+D AT++NDS KSE + + EPE+ D D+LI+CR+VYKSFGEKHILRGVSFKIRHGE
Sbjct: 64 SDECSATRYNDSYKSEQLRKVLEPENESDSDILIECRDVYKSFGEKHILRGVSFKIRHGE 123
Query: 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178
AVGIIGPSGTGKSTILKI+AGLLAPDKGEVYIRGRKR GLISD+++SGLRIGLVFQSAAL
Sbjct: 124 AVGIIGPSGTGKSTILKIMAGLLAPDKGEVYIRGRKRDGLISDQDLSGLRIGLVFQSAAL 183
Query: 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238
FDSLTVRENVGFLLYENS MR+EQISELV+E LAAVGLKGVEDRLPSELSGGMKKRVALA
Sbjct: 184 FDSLTVRENVGFLLYENSSMREEQISELVRETLAAVGLKGVEDRLPSELSGGMKKRVALA 243
Query: 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298
RSIIFD TKES+EPEVLLYDEPTAGLDPIASTVVEDLIRSVH K ++ L NPG IASYVV
Sbjct: 244 RSIIFDITKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMKADDELGNPGKIASYVV 303
Query: 299 VTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 352
VTHQHSTIRRAVDRL+FLY+GKIVWQGMT EFT+SSNPIVQQFASGSL+GPI+Y
Sbjct: 304 VTHQHSTIRRAVDRLLFLYKGKIVWQGMTDEFTTSSNPIVQQFASGSLDGPIKY 357
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449615|ref|XP_004142560.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like [Cucumis sativus] gi|449485367|ref|XP_004157146.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust.
Identities = 264/349 (75%), Positives = 299/349 (85%), Gaps = 2/349 (0%)
Query: 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDG 63
+S SGS+ FPL S SSR +A NSF K K+++R V C C+APP +D
Sbjct: 2 VSVSGSVFFPLTVPSCSSRSRKVAVIDAH--NSFCCKIKDQRRIVACNCIAPPPYFKSDE 59
Query: 64 FPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGII 123
A NDS +SE++++ E +++ DVLI+CRNV+KSFGEKHILRGVSFKIRHGEAVG+I
Sbjct: 60 SSAVNSNDSFRSEHLSSENEDKNESDVLIECRNVHKSFGEKHILRGVSFKIRHGEAVGVI 119
Query: 124 GPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183
GPSGTGKSTILKIIAGLL+PDKGEVYIRGRKR GLI DEE+SGLRIGLVFQSAALFDSLT
Sbjct: 120 GPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLVFQSAALFDSLT 179
Query: 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243
VR+NVGFLLYENS + ++QISELV ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF
Sbjct: 180 VRQNVGFLLYENSSLSEDQISELVTENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 239
Query: 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303
DNT++ +EPEVLLYDEPTAGLDPIASTVVEDLIRSVH KGE+ PG IASY+VVTHQH
Sbjct: 240 DNTRKEIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGEDASGKPGKIASYIVVTHQH 299
Query: 304 STIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 352
STIRRAVDRL+FLYEGK+VWQGMT EFT+S+NPIVQQFASGSL+GPIRY
Sbjct: 300 STIRRAVDRLLFLYEGKVVWQGMTGEFTTSTNPIVQQFASGSLDGPIRY 348
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507681|ref|XP_003624129.1| ABC transporter [Medicago truncatula] gi|355499144|gb|AES80347.1| ABC transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/352 (74%), Positives = 299/352 (84%), Gaps = 6/352 (1%)
Query: 1 MVSLSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLG 60
MVSLS L P T S S++ N +N F++ + RKV+CAC+APP++
Sbjct: 1 MVSLSIPFFPLTPQKTTSPSTKFQPKNNY----LNPFHHN--KHHRKVICACIAPPQNFK 54
Query: 61 TDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAV 120
+ +FN SSKSE +N + EDD DVLI+CR+VYKSFGEK IL GVSFKIRHGEAV
Sbjct: 55 AQDSSSIQFNGSSKSEQLNKARDHEDDSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAV 114
Query: 121 GIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180
GIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR GLISD+EISGLRIGLVFQSAALFD
Sbjct: 115 GIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRDGLISDDEISGLRIGLVFQSAALFD 174
Query: 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS 240
SLTVRENVGFLLYE+S M +E+ISELVKE LAAVGLKGVE+RLPSELSGGMKKRVALARS
Sbjct: 175 SLTVRENVGFLLYEHSSMPEEEISELVKETLAAVGLKGVENRLPSELSGGMKKRVALARS 234
Query: 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300
IIFD TK+S+EPEVLLYDEPTAGLDPIASTVVEDLIRSVH KG + L PGNI+SYVVVT
Sbjct: 235 IIFDTTKDSIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDALGKPGNISSYVVVT 294
Query: 301 HQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 352
HQHSTI+RA+DRL+FL++GK+VW+GMTHEFT+S+NPIVQQFASGSL+GPI+Y
Sbjct: 295 HQHSTIKRAIDRLLFLHKGKLVWEGMTHEFTTSTNPIVQQFASGSLDGPIKY 346
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807172|ref|NP_001242603.1| uncharacterized protein LOC100783283 [Glycine max] gi|255638918|gb|ACU19761.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/355 (73%), Positives = 300/355 (84%), Gaps = 13/355 (3%)
Query: 1 MVSLSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYY---KAKEEQRKVVCACVAPPR 57
MVSLS++ P K+ S+R+ P SF Y ++ + RKVVCAC+APP+
Sbjct: 1 MVSLSTTP--FLPFTAKNASTRI--------PPPTSFSYSKQRSNRDPRKVVCACIAPPQ 50
Query: 58 DLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHG 117
+ + A FN SSKSE ++T + EDD DVLI+CR+VYKSFGEK IL GVSFKI+HG
Sbjct: 51 NFKSQDSSAIHFNGSSKSEQLSTARDHEDDSDVLIECRDVYKSFGEKKILNGVSFKIKHG 110
Query: 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177
EAVGIIGPSGTGKST+LKIIAGLLAPDKGEVYIRG+KR GL+SD++ISGLRIGLVFQSAA
Sbjct: 111 EAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDDISGLRIGLVFQSAA 170
Query: 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237
LFDSLTVRENVGFLLYE+S M ++QISELV E LAAVGLKGVEDRLPSELSGGMKKRVAL
Sbjct: 171 LFDSLTVRENVGFLLYEHSSMSEDQISELVMETLAAVGLKGVEDRLPSELSGGMKKRVAL 230
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297
ARSII D TKES+EPEVLLYDEPTAGLDPIASTVVEDLIRSVH KG++ PGNI+SYV
Sbjct: 231 ARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGQDARGKPGNISSYV 290
Query: 298 VVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 352
VVTHQHSTI+RA+DRL+FL++GKIVW+GMTHEFT+S+NPIVQQFASGSL+GPIRY
Sbjct: 291 VVTHQHSTIKRAIDRLLFLHKGKIVWEGMTHEFTTSTNPIVQQFASGSLDGPIRY 345
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531918|ref|XP_003534523.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/355 (74%), Positives = 299/355 (84%), Gaps = 13/355 (3%)
Query: 1 MVSLSSSGSLLFPLATKSVSSRLSTLANSGKKPINSF---YYKAKEEQRKVVCACVAPPR 57
MVSLS++ L P K+ S+R P NSF ++ + RKVVCAC+APP+
Sbjct: 1 MVSLSTTPFL--PFTAKNASTRFP--------PPNSFSRNKQRSNRDHRKVVCACIAPPQ 50
Query: 58 DLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHG 117
+ + A FN SSKSE ++T ++ EDD DVLI+CR+VYKSFGEK IL GVSFKIRHG
Sbjct: 51 NFKSQDSSAINFNGSSKSEQLSTAWDHEDDSDVLIECRDVYKSFGEKKILNGVSFKIRHG 110
Query: 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177
EAVGIIGPSGTGKST+LKIIAGLLAPDKGEVYIRG+KR GL+SD++ISGLRIGLVFQSAA
Sbjct: 111 EAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDDISGLRIGLVFQSAA 170
Query: 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237
LFDSLTVRENVGFLLYE+S M ++QISELV E LAAVGLKGVEDRLPSELSGGMKKRVAL
Sbjct: 171 LFDSLTVRENVGFLLYEHSSMSEDQISELVTETLAAVGLKGVEDRLPSELSGGMKKRVAL 230
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297
ARSII D T+ES EPEVLLYDEPTAGLDPIASTVVEDLIRSVH KG + PGNIASYV
Sbjct: 231 ARSIICDTTEESKEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDARGKPGNIASYV 290
Query: 298 VVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 352
VVTHQHSTI+RA+DRL+FL++GKIVW+GMTHEFT+S+NPIVQQFASGSL+GPIRY
Sbjct: 291 VVTHQHSTIKRAIDRLLFLHKGKIVWEGMTHEFTTSTNPIVQQFASGSLDGPIRY 345
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297735294|emb|CBI17656.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 258/330 (78%), Positives = 290/330 (87%), Gaps = 2/330 (0%)
Query: 23 LSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLF 82
L T A G + +++ ++R +VCAC+APPR+L TDGF ATKFNDSS +N +
Sbjct: 10 LKTFAAPGNA--KALNWRSHGQKRNIVCACMAPPRNLRTDGFAATKFNDSSHLKNPSVDG 67
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
+ EDD DVL++CR+VYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKST+LKIIAGLLA
Sbjct: 68 DREDDSDVLVECRDVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLA 127
Query: 143 PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
PDKGEV IRGR+R GLISD+EISGLRIGLVFQSAALFDSLTVRENVGFLLYENS M ++Q
Sbjct: 128 PDKGEVLIRGRRRHGLISDQEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSSMPEDQ 187
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
I ELV E+LAAVGLKGVE+RLPSELSGGMKKRVALARSIIFD TK+++EPEVLLYDEPTA
Sbjct: 188 IHELVTESLAAVGLKGVEERLPSELSGGMKKRVALARSIIFDTTKDAIEPEVLLYDEPTA 247
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
GLDPIASTVVEDLIRSVH K E+ G IASYVVVTHQHSTIRRAVDRL+FLY+GKIV
Sbjct: 248 GLDPIASTVVEDLIRSVHLKEEDAPGKLGKIASYVVVTHQHSTIRRAVDRLLFLYDGKIV 307
Query: 323 WQGMTHEFTSSSNPIVQQFASGSLEGPIRY 352
W+GMT EFT+S+NPIVQQFASGSL+GPIRY
Sbjct: 308 WEGMTDEFTTSTNPIVQQFASGSLDGPIRY 337
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431009|ref|XP_002272680.1| PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/333 (77%), Positives = 294/333 (88%), Gaps = 5/333 (1%)
Query: 20 SSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVN 79
S+R + N+ K +N +++ ++R +VCAC+APPR+L TDGF ATKFNDSS +N +
Sbjct: 14 SNRFAAPGNA--KALN---WRSHGQKRNIVCACMAPPRNLRTDGFAATKFNDSSHLKNPS 68
Query: 80 TLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139
+ EDD DVL++CR+VYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKST+LKIIAG
Sbjct: 69 VDGDREDDSDVLVECRDVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAG 128
Query: 140 LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR 199
LLAPDKGEV IRGR+R GLISD+EISGLRIGLVFQSAALFDSLTVRENVGFLLYENS M
Sbjct: 129 LLAPDKGEVLIRGRRRHGLISDQEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSSMP 188
Query: 200 DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
++QI ELV E+LAAVGLKGVE+RLPSELSGGMKKRVALARSIIFD TK+++EPEVLLYDE
Sbjct: 189 EDQIHELVTESLAAVGLKGVEERLPSELSGGMKKRVALARSIIFDTTKDAIEPEVLLYDE 248
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319
PTAGLDPIASTVVEDLIRSVH K E+ G IASYVVVTHQHSTIRRAVDRL+FLY+G
Sbjct: 249 PTAGLDPIASTVVEDLIRSVHLKEEDAPGKLGKIASYVVVTHQHSTIRRAVDRLLFLYDG 308
Query: 320 KIVWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 352
KIVW+GMT EFT+S+NPIVQQFASGSL+GPIRY
Sbjct: 309 KIVWEGMTDEFTTSTNPIVQQFASGSLDGPIRY 341
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|89357201|gb|ABD72483.1| ABC transporter II-like protein [Gossypium barbadense] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/355 (75%), Positives = 298/355 (83%), Gaps = 9/355 (2%)
Query: 1 MVSLSSSGSLL--FPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPP-R 57
M S + S SLL FP+ T S+R L GK+ + K+EQR V+CAC+APP +
Sbjct: 1 MTSATFSSSLLGSFPVVT---STRHCDL---GKERSKFCCFNEKKEQRNVICACMAPPTK 54
Query: 58 DLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHG 117
+LG D F TKF +SSK N + + E+D DVLI+CRNVYKSFGEKHILRGVSFKIRHG
Sbjct: 55 NLGRDEFHGTKFTESSKYGNFSKEVKHENDSDVLIECRNVYKSFGEKHILRGVSFKIRHG 114
Query: 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177
EAVGIIGPSGTGKSTILKIIAGLL+PDKGEVYIRG+KR GLI D+EISGLRIGLVFQSAA
Sbjct: 115 EAVGIIGPSGTGKSTILKIIAGLLSPDKGEVYIRGKKRMGLIGDDEISGLRIGLVFQSAA 174
Query: 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237
LFDSLTVRENVGFLLYENS M DEQIS+LV E LAAVGLKGVE+RLPSELSGGMKKRVAL
Sbjct: 175 LFDSLTVRENVGFLLYENSCMSDEQISQLVTETLAAVGLKGVEERLPSELSGGMKKRVAL 234
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297
ARSII D +KES+EPEVLLYDEPTAGLDPIASTVVEDLI SVH KGE+ G IASYV
Sbjct: 235 ARSIICDISKESIEPEVLLYDEPTAGLDPIASTVVEDLICSVHTKGEDASGKQGKIASYV 294
Query: 298 VVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 352
VVTHQHSTI RAVDRL+FL+EGK+VWQGMT EFT+S+NPIV+QFASG+L+GPIRY
Sbjct: 295 VVTHQHSTILRAVDRLLFLHEGKVVWQGMTEEFTTSTNPIVRQFASGNLDGPIRY 349
|
Source: Gossypium barbadense Species: Gossypium barbadense Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297838071|ref|XP_002886917.1| ATNAP11 [Arabidopsis lyrata subsp. lyrata] gi|297332758|gb|EFH63176.1| ATNAP11 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/309 (80%), Positives = 277/309 (89%), Gaps = 4/309 (1%)
Query: 45 QRKVVCACVAPPRDLGTDGFPATKFNDSSKSEN-VNTLFEPEDDGDVLIDCRNVYKSFGE 103
+RKV C C+APP++L D ATKF+ +KS + E E+D DVLI+CR+VYKSFGE
Sbjct: 33 RRKVSCCCIAPPQNLDND---ATKFDSLTKSGGGMRKQRELENDSDVLIECRDVYKSFGE 89
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
KHIL+GVSFKIRHGEAVG+IGPSGTGKSTILKI+AGLLAPDKGEVYIRG+KRAGLISDEE
Sbjct: 90 KHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEE 149
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
ISGLRIGLVFQSAALFDSL+VRENVGFLLYE SKM + QISELV + LAAVGLKGVE+RL
Sbjct: 150 ISGLRIGLVFQSAALFDSLSVRENVGFLLYERSKMSENQISELVTQTLAAVGLKGVENRL 209
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
PSELSGGMKKRVALARS+IFD TKE +EPEVLLYDEPTAGLDPIASTVVEDLIRSVH
Sbjct: 210 PSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMTD 269
Query: 284 ENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 343
E+ + PG IASY+VVTHQHSTI+RAVDRL+FLYEGKIVWQGMTHEFT+S+NPIVQQFA+
Sbjct: 270 EDAVGKPGKIASYLVVTHQHSTIQRAVDRLLFLYEGKIVWQGMTHEFTTSTNPIVQQFAT 329
Query: 344 GSLEGPIRY 352
GSL+GPIRY
Sbjct: 330 GSLDGPIRY 338
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18408274|ref|NP_564850.1| protein triGALACTOSYLDIACYLGLYCEROL 3 [Arabidopsis thaliana] gi|75333028|sp|Q9AT00.1|AB13I_ARATH RecName: Full=Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic; AltName: Full=ABC transporter I family member 13; Short=ABC transporter ABCI.13; Short=AtABCI13; AltName: Full=Non-intrinsic ABC protein 11; Flags: Precursor gi|13605495|gb|AAK32741.1|AF361573_1 At1g65410/T8F5_19 [Arabidopsis thaliana] gi|20334770|gb|AAM16246.1| At1g65410/T8F5_19 [Arabidopsis thaliana] gi|332196249|gb|AEE34370.1| protein triGALACTOSYLDIACYLGLYCEROL 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/309 (79%), Positives = 276/309 (89%), Gaps = 4/309 (1%)
Query: 45 QRKVVCACVAPPRDLGTDGFPATKFNDSSKSEN-VNTLFEPEDDGDVLIDCRNVYKSFGE 103
+RKV C C+APP++L D ATKF+ +KS + E+D DVLI+CR+VYKSFGE
Sbjct: 40 RRKVSCCCIAPPQNLDND---ATKFDSLTKSGGGMCKERGLENDSDVLIECRDVYKSFGE 96
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
KHIL+GVSFKIRHGEAVG+IGPSGTGKSTILKI+AGLLAPDKGEVYIRG+KRAGLISDEE
Sbjct: 97 KHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEE 156
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
ISGLRIGLVFQSAALFDSL+VRENVGFLLYE SKM + QISELV + LAAVGLKGVE+RL
Sbjct: 157 ISGLRIGLVFQSAALFDSLSVRENVGFLLYERSKMSENQISELVTQTLAAVGLKGVENRL 216
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
PSELSGGMKKRVALARS+IFD TKE +EPEVLLYDEPTAGLDPIASTVVEDLIRSVH
Sbjct: 217 PSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMTD 276
Query: 284 ENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 343
E+ + PG IASY+VVTHQHSTI+RAVDRL+FLYEGKIVWQGMTHEFT+S+NPIVQQFA+
Sbjct: 277 EDAVGKPGKIASYLVVTHQHSTIQRAVDRLLFLYEGKIVWQGMTHEFTTSTNPIVQQFAT 336
Query: 344 GSLEGPIRY 352
GSL+GPIRY
Sbjct: 337 GSLDGPIRY 345
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | ||||||
| TAIR|locus:2206275 | 345 | ABCI13 "ATP-binding cassette I | 0.866 | 0.884 | 0.799 | 1.4e-126 | |
| TIGR_CMR|GSU_0816 | 248 | GSU_0816 "ABC transporter, ATP | 0.681 | 0.967 | 0.416 | 1.2e-47 | |
| TIGR_CMR|SPO_2672 | 249 | SPO_2672 "ABC transporter, ATP | 0.690 | 0.975 | 0.412 | 1.6e-45 | |
| TIGR_CMR|GSU_1227 | 292 | GSU_1227 "ABC transporter, ATP | 0.701 | 0.845 | 0.406 | 1.5e-42 | |
| UNIPROTKB|Q48EC1 | 269 | PSPPH_4145 "Toluene tolerance | 0.710 | 0.929 | 0.378 | 1.4e-39 | |
| UNIPROTKB|Q87WU6 | 269 | PSPTO_4447 "Toluene tolerance | 0.710 | 0.929 | 0.378 | 2.9e-39 | |
| UNIPROTKB|Q606P6 | 275 | MCA1969 "ABC transporter, ATP- | 0.713 | 0.912 | 0.367 | 2.6e-38 | |
| TIGR_CMR|SO_3954 | 272 | SO_3954 "ABC transporter, ATP- | 0.696 | 0.900 | 0.375 | 4.3e-38 | |
| UNIPROTKB|P63357 | 359 | mkl "Probable ribonucleotide t | 0.693 | 0.679 | 0.361 | 1.5e-37 | |
| TIGR_CMR|CPS_4536 | 267 | CPS_4536 "ABC transporter, ATP | 0.696 | 0.917 | 0.352 | 4.9e-37 |
| TAIR|locus:2206275 ABCI13 "ATP-binding cassette I13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
Identities = 247/309 (79%), Positives = 275/309 (88%)
Query: 45 QRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP-EDDGDVLIDCRNVYKSFGE 103
+RKV C C+APP++L D ATKF+ +KS E+D DVLI+CR+VYKSFGE
Sbjct: 40 RRKVSCCCIAPPQNLDND---ATKFDSLTKSGGGMCKERGLENDSDVLIECRDVYKSFGE 96
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
KHIL+GVSFKIRHGEAVG+IGPSGTGKSTILKI+AGLLAPDKGEVYIRG+KRAGLISDEE
Sbjct: 97 KHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEE 156
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
ISGLRIGLVFQSAALFDSL+VRENVGFLLYE SKM + QISELV + LAAVGLKGVE+RL
Sbjct: 157 ISGLRIGLVFQSAALFDSLSVRENVGFLLYERSKMSENQISELVTQTLAAVGLKGVENRL 216
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
PSELSGGMKKRVALARS+IFD TKE +EPEVLLYDEPTAGLDPIASTVVEDLIRSVH
Sbjct: 217 PSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMTD 276
Query: 284 ENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 343
E+ + PG IASY+VVTHQHSTI+RAVDRL+FLYEGKIVWQGMTHEFT+S+NPIVQQFA+
Sbjct: 277 EDAVGKPGKIASYLVVTHQHSTIQRAVDRLLFLYEGKIVWQGMTHEFTTSTNPIVQQFAT 336
Query: 344 GSLEGPIRY 352
GSL+GPIRY
Sbjct: 337 GSLDGPIRY 345
|
|
| TIGR_CMR|GSU_0816 GSU_0816 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 108/259 (41%), Positives = 165/259 (63%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
+V+KSFG + +L G++ +I G+ +IGPSG GKS +LK + GL+ PD+GEV++ G +
Sbjct: 6 DVHKSFGSQVVLDGLTMEIPEGKITAVIGPSGEGKSVLLKHMIGLMKPDRGEVFVEG-EN 64
Query: 156 AGLISDEEISGL--RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA 213
+ +++ + + G++FQ+AALFDSLTV ENV F L E + + +IS+ V + L
Sbjct: 65 ITTMRRYQMNRVWEKFGMLFQNAALFDSLTVFENVAFPLEEKTHLSRSEISDRVHDALEH 124
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
VGL+ V+ + P ELSGGMKKRV LAR+++ + P ++L+DEPT GLDPI +
Sbjct: 125 VGLRNVDKKFPDELSGGMKKRVGLARALLLN-------PRIILFDEPTTGLDPIICRAIH 177
Query: 274 DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSS 333
+LIR H++ G A V+V+H+ I + + LY GKI+ QG + + S
Sbjct: 178 ELIRETHERF-------GYTA--VIVSHEIPEIFDISENVAMLYRGKIIEQGTSEDIRRS 228
Query: 334 SNPIVQQFASGSLEGPIRY 352
+P+V+QF SGSLEGPI++
Sbjct: 229 EHPVVRQFISGSLEGPIQF 247
|
|
| TIGR_CMR|SPO_2672 SPO_2672 "ABC transporter, ATP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 108/262 (41%), Positives = 154/262 (58%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I NV+K+FG +L+G++ ++ G ++ IIG SGTGKS LK + GL+ PD G++Y+
Sbjct: 1 MIRMENVHKAFGPNRVLQGMNLEVPRGTSMVIIGGSGTGKSVALKCVLGLIRPDSGKIYV 60
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRD-EQISELVKE 209
G+ A D + R G++FQ ALFDSL V +NV F L S R ++ E+ E
Sbjct: 61 DGKDAADT-GDRDAFLARFGMLFQGGALFDSLPVWQNVAFRLLRGSLKRPTDEAREIAIE 119
Query: 210 NLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
L VGLK V DRLP+ELSGGM+KRV LAR+I + EPE++ +DEPT GLDPI
Sbjct: 120 KLRRVGLKPDVADRLPAELSGGMQKRVGLARAI-------AAEPEIIFFDEPTTGLDPIM 172
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
+ V+ +LIR + E G A+ + +TH +++R D + L+ G I W G
Sbjct: 173 AGVINELIREIVT--EMG-------ATAMTITHDMTSVRAIADNVAMLHGGVIQWTGPVA 223
Query: 329 EFTSSSNPIVQQFASGSLEGPI 350
+ S +P + QF G EGPI
Sbjct: 224 QMDDSGDPYLDQFIHGRAEGPI 245
|
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| TIGR_CMR|GSU_1227 GSU_1227 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 107/263 (40%), Positives = 153/263 (58%)
Query: 86 DDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK 145
D V I N+ K FGEKH+L+ V+ I GE IIGPSGTGKS +L+ I L PD
Sbjct: 42 DTRGVSIRIENLNKYFGEKHVLKDVNLAINAGETFCIIGPSGTGKSVLLRHIVKLDRPDS 101
Query: 146 GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
GE++I G + S R +VFQS+ALF+SLTV ENVG L E ++ +I E
Sbjct: 102 GEIFIDGHPVFVNAGKDTPSDYRYSMVFQSSALFNSLTVGENVGLWLREKRICKEHRIRE 161
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+++E LA VGL+ E SELSGGMKKRVA+ARS+ ++ P+++LYDEPTA LD
Sbjct: 162 IIREKLAMVGLENTEQLKTSELSGGMKKRVAIARSL-------AMNPDLILYDEPTAELD 214
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
P+ + + + I + + +N + ++VTH + DR+ +++G+IV G
Sbjct: 215 PVTTDELANTILKLKETTKN---------TTIIVTHDLNFALYVSDRIAMMHDGRIVDVG 265
Query: 326 MTHEFTSSSNPIVQQFASGSLEG 348
E +S NPIV+ F + +G
Sbjct: 266 TPTEIKASQNPIVRGFIYTTTKG 288
|
|
| UNIPROTKB|Q48EC1 PSPPH_4145 "Toluene tolerance ABC transporter, ATP-binding protein, putative" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 101/267 (37%), Positives = 155/267 (58%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
D ++ + V G + I V +I G+ GI+GPSG GK+T+L+++ L P +G
Sbjct: 4 DDAYAVELKGVSFKRGTRSIFNNVDIRIPRGKVTGIMGPSGCGKTTLLRLMGAQLRPSEG 63
Query: 147 EVYIRGRKRAGLI-SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+V++ G+ L SD + ++G++FQS ALF L V ENV F L ++++ +E I +
Sbjct: 64 QVWVNGQNLPELSRSDLFDARKQMGVLFQSGALFTDLDVFENVAFPLRVHTELPEEMIRD 123
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+V L AVGL+G + +P ELSGGMK+RVALAR+I D P++L+YDEP G D
Sbjct: 124 IVLLKLQAVGLRGAVELMPDELSGGMKRRVALARAIALD-------PQILMYDEPFVGQD 176
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
PIA V+ LIR ++ + L I S +VV+H S D L + +G+++ QG
Sbjct: 177 PIAMGVLVRLIRLLN----DALG----ITS-IVVSHDLSETASIADYLYVVGDGQVLGQG 227
Query: 326 MTHEFTSSSNPIVQQFASGSLEGPIRY 352
E SS NP ++QF +G +GP+ +
Sbjct: 228 TPEELMSSDNPRIRQFMTGEPDGPVPF 254
|
|
| UNIPROTKB|Q87WU6 PSPTO_4447 "Toluene tolerance ABC transporter, ATP-binding protein, putative" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 101/267 (37%), Positives = 154/267 (57%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
D ++ + V G + I V +I G+ GI+GPSG GK+T+L+++ L P +G
Sbjct: 4 DDAYAVELKGVSFKRGTRSIFNNVDIRIPRGKVTGIMGPSGCGKTTLLRLMGAQLRPSEG 63
Query: 147 EVYIRGRKRAGLI-SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+V + G+ L SD + ++G++FQS ALF L V ENV F L ++++ +E I +
Sbjct: 64 QVLVNGQNLPELSRSDLFDARKQMGVLFQSGALFTDLDVFENVAFPLRVHTELPEEMIRD 123
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+V L AVGL+G + +P ELSGGMK+RVALAR+I D P++L+YDEP G D
Sbjct: 124 IVLLKLQAVGLRGAVELMPDELSGGMKRRVALARAIALD-------PQILMYDEPFVGQD 176
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
PIA V+ LIR ++ + L I S +VV+H S D L + +G+++ QG
Sbjct: 177 PIAMGVLVRLIRLLN----DALG----ITS-IVVSHDLSETASIADYLYVVGDGQVLGQG 227
Query: 326 MTHEFTSSSNPIVQQFASGSLEGPIRY 352
E SS NP ++QF +G +GP+ +
Sbjct: 228 TPEELMSSDNPRIRQFMTGEPDGPVPF 254
|
|
| UNIPROTKB|Q606P6 MCA1969 "ABC transporter, ATP-binding family protein" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
|---|
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 101/275 (36%), Positives = 153/275 (55%)
Query: 82 FEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141
F+P D L+ R + S + I + I G+ I+GPSGTGK+T+L+++ G L
Sbjct: 3 FQPSDT-PALVSIRGLSFSRNGRKIFDNIDLDIPRGKITAIMGPSGTGKTTLLRLVGGQL 61
Query: 142 APDKGEVYIRGRK--RAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSK 197
PD G V + G R GL +E+ LR +G++FQS AL L+V ENV F L E+++
Sbjct: 62 RPDSGTVRVAGINVHRLGL---DELYALRKRMGMLFQSGALLTDLSVYENVAFPLREHTR 118
Query: 198 MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
+ + I LV L AVGL+G D +P++LSGGM +RVALAR+I+ D P +++Y
Sbjct: 119 LPESMIRTLVLMKLEAVGLRGARDLMPAQLSGGMARRVALARAIVLD-------PMMIMY 171
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317
DEP G DPI+ V+ LI ++ +GL + S +VV+H D + +
Sbjct: 172 DEPFTGQDPISMGVLVQLIHDLN----HGLG----LTS-IVVSHDVQETASIADYVYLIS 222
Query: 318 EGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 352
GK+V +G E S +P ++QF G +GP+ +
Sbjct: 223 GGKVVGRGTPAELARSDSPWIRQFMDGLPDGPVHF 257
|
|
| TIGR_CMR|SO_3954 SO_3954 "ABC transporter, ATP-binding protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 99/264 (37%), Positives = 152/264 (57%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L++ R++ G++ I +S I G+ I+GPSG GK+T+LK+I G L PD G+V
Sbjct: 8 LVEIRHLGFRRGQRVIYEDISLSIPRGKVTAIMGPSGIGKTTLLKLIGGQLTPDSGQVLF 67
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G+ S E+ LR + ++FQS ALF + V +NV F L E+S + +E I +V
Sbjct: 68 DGQD-VHAASRNELFELRKRMSMLFQSGALFTDINVFDNVAFALREHSGLPEEIIRTIVL 126
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
L AVGL+G +PSELSGGM++R ALAR+I ++EPE+++YDEP AG DPI+
Sbjct: 127 MKLEAVGLRGAAQLMPSELSGGMQRRAALARAI-------ALEPEMVMYDEPFAGQDPIS 179
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
V+ LIR L++ N+ S VVV+H + D + + + K++ G
Sbjct: 180 MGVLVKLIRE--------LSDALNLTS-VVVSHDVDEVLGIADYVYVVADKKVIAHGTPE 230
Query: 329 EFTSSSNPIVQQFASGSLEGPIRY 352
E + NP ++QF G+ +GP+ +
Sbjct: 231 ELKHADNPQLKQFIEGAPDGPVPF 254
|
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| UNIPROTKB|P63357 mkl "Probable ribonucleotide transport ATP-binding protein mkl" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 95/263 (36%), Positives = 145/263 (55%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V I+ + KSFG I V+ I GE ++GPSGTGKS LK + GLL P++G +
Sbjct: 26 VSIEVNGLTKSFGSSRIWEDVTLTIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSII 85
Query: 150 IRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + E EI L G++FQ ALF S+ + +N F L E++K ++ +I ++V
Sbjct: 86 IDGTDIIECSAKELYEIRTL-FGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIV 144
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E LA VGL G E + P E+SGGM+KR LAR+++ D P+++L DEP +GLDP+
Sbjct: 145 MEKLALVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPV 197
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
+ + LI ++ + + A+ ++VTH + R D + L+ +V G
Sbjct: 198 RTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGMLFRKHLVMFGPR 248
Query: 328 HEFTSSSNPIVQQFASGSLEGPI 350
+S P+V+QF +G GPI
Sbjct: 249 EVLLTSDEPVVRQFLNGRRIGPI 271
|
|
| TIGR_CMR|CPS_4536 CPS_4536 "ABC transporter, ATP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 93/264 (35%), Positives = 150/264 (56%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+++ N+ GE+ I +S I G+ I+GPSG GK+T+L++I G + P+ G ++
Sbjct: 1 MVEIENLTFKRGERVIYDDISLSIPKGKVTAIMGPSGIGKTTLLRLIGGQIKPESGNIFF 60
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
GR L+S ++ +R + ++FQS ALF ++V +N+ F + E++++ + I ++V
Sbjct: 61 AGRN-IPLLSRADLYEVRKDMSMLFQSGALFTEMSVYDNIAFPIREHTQLSEAIIEKIVL 119
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
L AVGL+G PSELSGGM +RVALAR+I D PE++LYDEP AG DPI+
Sbjct: 120 MKLEAVGLRGARHLQPSELSGGMARRVALARAIALD-------PELILYDEPFAGQDPIS 172
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
V+ LIRS++ GL + +VV+H + D + + E KI+ G
Sbjct: 173 MGVIVRLIRSLNDA--LGLTS-------IVVSHDVPEVMSIADYIYIVAEKKIIGHGTPD 223
Query: 329 EFTSSSNPIVQQFASGSLEGPIRY 352
+ S+ +VQQF G +G + +
Sbjct: 224 QIRQDSSALVQQFIQGEADGAVPF 247
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9AT00 | AB13I_ARATH | No assigned EC number | 0.7993 | 0.8664 | 0.8840 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00025111001 | SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (749 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00033530001 | SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (329 aa) | • | • | • | 0.652 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 352 | |||
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-121 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-102 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-63 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-63 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-58 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-58 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-58 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-58 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-57 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-57 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-57 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-57 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-57 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-56 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-56 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-54 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-53 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-53 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-51 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-51 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-50 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-50 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-50 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-48 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-48 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-48 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-48 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-47 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-47 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-47 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-46 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-46 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-46 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 7e-45 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-44 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-43 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-43 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-43 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-43 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-43 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-42 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-42 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-42 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-42 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-42 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-41 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-41 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-41 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-41 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-41 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-40 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-40 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-40 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-40 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-40 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-40 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-39 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-39 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-39 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-39 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-38 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-38 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-38 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-38 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-38 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-38 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-38 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-38 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-38 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-38 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-37 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 7e-37 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-36 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-36 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-36 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-36 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-36 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-36 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-36 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-36 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-36 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-35 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-35 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-35 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-35 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-35 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-35 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-35 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-35 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 5e-35 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-35 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-35 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-34 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-34 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-34 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 7e-34 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-33 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-33 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-33 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-33 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-33 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-33 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 7e-33 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-33 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 8e-33 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 8e-33 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 8e-33 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 9e-33 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-32 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-32 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-32 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-32 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-32 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-32 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-31 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-31 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-31 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-31 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-31 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-31 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-31 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 6e-31 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 7e-31 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-31 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-30 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-30 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-30 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-30 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-30 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-30 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-30 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-30 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-30 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-29 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-29 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-29 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-29 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-29 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-29 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-29 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-29 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-29 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-29 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-29 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-29 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-29 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-29 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-29 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-29 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-29 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-29 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 6e-29 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-29 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-29 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-29 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 7e-29 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 9e-29 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-28 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-28 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-28 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-28 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-28 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-28 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-28 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-28 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-28 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-28 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-28 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 5e-28 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-28 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 6e-28 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-27 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-27 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-27 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-27 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-27 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-27 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-27 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-27 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-27 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-27 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-27 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-27 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 9e-27 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-27 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-26 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-26 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-26 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-26 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-26 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-26 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 4e-26 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-26 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 7e-26 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-26 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-25 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-25 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-25 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-25 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-25 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-25 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-25 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-25 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-25 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 5e-25 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-25 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 9e-25 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-24 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-24 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-24 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-24 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 6e-24 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-24 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-23 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-23 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-23 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-23 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-23 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-23 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 7e-23 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 9e-23 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 9e-23 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-22 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-22 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-22 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-22 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-22 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-22 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-22 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-22 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-22 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-22 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-22 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-22 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 8e-22 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-21 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-21 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-21 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-21 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-21 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-21 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-21 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 6e-21 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-21 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-20 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-20 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-20 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-20 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-20 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-20 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-20 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-20 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-20 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-19 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-19 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-19 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 5e-19 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-19 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-19 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 9e-19 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-18 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-18 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-18 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-18 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-18 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-17 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-17 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-17 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-17 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-17 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-16 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-16 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-16 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-16 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-15 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-15 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-15 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-15 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-15 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-15 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 8e-15 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-14 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-14 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-14 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-14 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 6e-14 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-14 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-14 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 9e-14 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-13 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-13 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-13 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-13 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 6e-13 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-13 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-12 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-12 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-12 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-12 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-12 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-12 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 6e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-12 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 7e-12 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-12 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-11 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-11 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-11 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-11 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-11 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 5e-11 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-11 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-11 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 1e-10 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-10 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 3e-10 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 6e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-09 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-09 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-09 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-09 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 5e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-09 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 6e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-09 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-08 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-07 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 6e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 7e-07 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 9e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-06 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 2e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 5e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 6e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.001 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.001 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 0.001 | |
| PRK15177 | 213 | PRK15177, PRK15177, Vi polysaccharide export ATP-b | 0.002 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.004 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 349 bits (897), Expect = e-121
Identities = 131/251 (52%), Positives = 171/251 (68%), Gaps = 17/251 (6%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ R + KSFG + +L+GV +R GE + IIGPSG+GKST+L++I GLL PD GEV I
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 152 GRKRAGLISDEEIS-GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
G +GL E R+G++FQS ALFDSLTV ENV F L E++++ +E+I E+V E
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
L AVGL+G ED P+ELSGGMKKRVALAR++ D PE+LLYDEPTAGLDPIAS
Sbjct: 121 LEAVGLRGAEDLYPAELSGGMKKRVALARALALD-------PELLLYDEPTAGLDPIASG 173
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
V++DLIRS+ K E GL + ++VTH T DR+ LY+GKIV +G E
Sbjct: 174 VIDDLIRSLKK--ELGL-------TSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
Query: 331 TSSSNPIVQQF 341
+S +P+V+QF
Sbjct: 225 RASDDPLVRQF 235
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 301 bits (774), Expect = e-102
Identities = 116/271 (42%), Positives = 164/271 (60%), Gaps = 18/271 (6%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
+ LI+ R V KSFG++ IL GV + GE + I+G SG+GKST+L++I GLL P
Sbjct: 1 MSASPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 144 DKGEVYIRGRKRAGLISDEEIS-GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
DKGE+ I G L +E R+G++FQ ALF SLTV ENV F L E++K+ +
Sbjct: 61 DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESL 120
Query: 203 ISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
I ELV L VGL+G D PSELSGGM+KRVALAR+I D PE+L DEPT
Sbjct: 121 IRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD-------PELLFLDEPT 173
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
+GLDPI++ V+++LIR ++ + ++VTH ++ DR+ L +GK+
Sbjct: 174 SGLDPISAGVIDELIRELNDALG---------LTVIMVTHDLDSLLTIADRVAVLADGKV 224
Query: 322 VWQGMTHEFTSSSNPIVQQFASGSLEGPIRY 352
+ +G E +S +P V+QF +G +GPI +
Sbjct: 225 IAEGTPEELLASDDPWVRQFFNGIRDGPIPF 255
|
Length = 263 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 2e-63
Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 21/231 (9%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+ + K++G L +S + GE + ++GPSG GK+T+L++IAGL PD GE+ I GR
Sbjct: 4 KGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGR- 62
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
++ IG+VFQ ALF LTV EN+ F L + + +I V+E L V
Sbjct: 63 ---DVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGL-KLRGVPKAEIRARVRELLELV 118
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL+G+ +R P ELSGG ++RVALAR++ EP +LL DEP + LD + +
Sbjct: 119 GLEGLLNRYPHELSGGQQQRVALARALA-------REPSLLLLDEPLSALDAKLREELRE 171
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
++ + ++ + + VTH DR+ + EG+IV G
Sbjct: 172 ELKELQRELG---------ITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 6e-63
Identities = 92/254 (36%), Positives = 147/254 (57%), Gaps = 23/254 (9%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ +N+ KSFG+K +L+G+S + GE V IIGPSG+GKST+L+ + GL PD G + +
Sbjct: 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G + ++I LR +G+VFQ LF LTV ENV + K+ + E
Sbjct: 62 DGED---VGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKAL 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E L VGL D P++LSGG ++RVA+AR++ +++P+V+L+DEPT+ LDP
Sbjct: 119 ELLEKVGLADKADAYPAQLSGGQQQRVAIARAL-------AMDPKVMLFDEPTSALDPEL 171
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
V D+++ + ++G + ++VTH+ R DR+IF+ +GKI+ +G
Sbjct: 172 VGEVLDVMKDLAEEG----------MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPE 221
Query: 329 E-FTSSSNPIVQQF 341
E F + + +QF
Sbjct: 222 EFFDNPKSERTRQF 235
|
Length = 240 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 1e-58
Identities = 90/237 (37%), Positives = 130/237 (54%), Gaps = 26/237 (10%)
Query: 92 IDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
I+ +N+ K++G + L+GVS I GE V I+GPSG+GKST+L I+ GL P GE
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 148 VYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
V + G + L S++E++ R IG VFQS L LT ENV L + + ++
Sbjct: 61 VRVDGTDISKL-SEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL-LLAGVPKKERR 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
E +E L VGL + PSELSGG ++RVA+AR++ +P+++L DEPT L
Sbjct: 119 ERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALA-------NDPKIILADEPTGNL 171
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
D V +L+R ++K+ + VVVTH A DR+I L +GKI
Sbjct: 172 DSETGKEVMELLRELNKEAGTTI---------VVVTHDPELAEYA-DRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 1e-58
Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 26/246 (10%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKG 146
I+ R++ +G+KH L+ +S I GE +IGPSG GKST+L+++ L APD+G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
EV + G+ L D R+G+VFQ F ++ +NV + L + E++ E
Sbjct: 61 EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDER 119
Query: 207 VKENLAAVGLKG-VEDRL-PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
V+E L L V+DRL LSGG ++R+ LAR++ EPEVLL DEPT+ L
Sbjct: 120 VEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA-------NEPEVLLLDEPTSAL 172
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
DPI++ +E+LI + K+ + V+VTH R DR FL G++V
Sbjct: 173 DPISTAKIEELIAELKKE-----------YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221
Query: 325 GMTHEF 330
G T +
Sbjct: 222 GPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 188 bits (481), Expect = 2e-58
Identities = 77/194 (39%), Positives = 106/194 (54%), Gaps = 15/194 (7%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
L++ V KSFG +L ++ + GE V I+GPSG GKST+L++IAGL P GEV
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
+ GR G G IG VFQ AL LTV +NV L K + E E K
Sbjct: 61 LLDGRPVTG-------PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEAR-ERAK 112
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E L VGL G ED+ P +LSGGM++RVA+AR++ P++LL DEP LD +
Sbjct: 113 ELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATR-------PKLLLLDEPFGALDALT 165
Query: 269 STVVEDLIRSVHKK 282
++D + + ++
Sbjct: 166 REELQDELLRLWEE 179
|
Length = 248 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 5e-58
Identities = 85/232 (36%), Positives = 127/232 (54%), Gaps = 20/232 (8%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ RNV KSFG+ + +S I+ GE V ++GPSG GK+T+L++IAG P GE+ +
Sbjct: 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILL 64
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
G I+D IG+VFQS ALF +TV ENV F L K++ +I V+E
Sbjct: 65 DGED----ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
L VGL+G DR P +LSGG ++RVALAR+++ EP+VLL DEP + LD
Sbjct: 121 LELVGLEGFADRKPHQLSGGQQQRVALARALVP-------EPKVLLLDEPLSALDAKLRE 173
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
+ ++ + ++ ++V VTH DR+ + +G+I
Sbjct: 174 QMRKELKELQRELG---------ITFVYVTHDQEEALAMSDRIAVMNDGRIE 216
|
Length = 352 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 1e-57
Identities = 86/233 (36%), Positives = 120/233 (51%), Gaps = 36/233 (15%)
Query: 92 IDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
++ RNV K++G L +S + GE V ++GPSG GKST+L+IIAGL P GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
V + G G G G VFQ AL LTV +NV L E + + E
Sbjct: 61 VLVDGEPVTG-------PGPDRGYVFQQDALLPWLTVLDNVALGL-ELQGVPKAEARERA 112
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
+E L VGL G E+ P +LSGGM++RVALAR++ V+P+VLL DEP + LD +
Sbjct: 113 EELLELVGLSGFENAYPHQLSGGMRQRVALARALA-------VDPDVLLLDEPFSALDAL 165
Query: 268 -ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV---DRLIFL 316
+ E+L+ + G + ++VTH I AV DR++ L
Sbjct: 166 TREQLQEELLDIWRETG----------KTVLLVTHD---IDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 1e-57
Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 27/243 (11%)
Query: 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+I+ RN+ K +G +K L GVSF++ GE G++GP+G GK+T+LKI+AGLL P GE+
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 150 IRGRKRAGLISDEEISGLR-IGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISEL 206
+ G + E R IG V Q +L+ LTVREN+ F LY + E+ E
Sbjct: 64 VLGYD----VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEER 116
Query: 207 VKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
++E L GL+ ++ LSGGMK+R+++A +++ +PE+L+ DEPT+GLDP
Sbjct: 117 IEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL-------HDPELLILDEPTSGLDP 169
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326
+ + +L+R LA G + ++ TH DR+I L +GKI+ +G
Sbjct: 170 ESRREIWELLRE--------LAKEGGVTI-LLSTHILEEAEELCDRVIILNDGKIIAEGT 220
Query: 327 THE 329
E
Sbjct: 221 PEE 223
|
Length = 293 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 5e-57
Identities = 88/232 (37%), Positives = 134/232 (57%), Gaps = 21/232 (9%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ +N++KSFG+ H+L+G+ ++ GE V IIGPSG+GKST+L+ I L PD G + I
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 152 GRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
G K + I+ LR +G+VFQ LF LTV EN+ + M + E E
Sbjct: 61 GLKL--TDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALE 118
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
L VGL D P++LSGG ++RVA+AR++ ++ P+V+L+DEPT+ LDP
Sbjct: 119 LLEKVGLADKADAYPAQLSGGQQQRVAIARAL-------AMNPKVMLFDEPTSALDPELV 171
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
V D+++ + ++G + VVVTH+ R DR+IF+ +G+I
Sbjct: 172 GEVLDVMKDLAEEG----------MTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 5e-57
Identities = 88/240 (36%), Positives = 134/240 (55%), Gaps = 29/240 (12%)
Query: 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I+ +NV K +G + L+ V+ +I GE V I+GPSG+GKST+L ++ GL P G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGF-LLYENSKMRDEQ 202
EV I G+ L S++E++ LR IG VFQ+ L LTV ENV LL + +
Sbjct: 61 EVLINGKDLTKL-SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLI--AGKSAGR 117
Query: 203 ISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
+E L +GL+ + + PSELSGG ++RVA+AR++I P+++L DEPT
Sbjct: 118 RKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI-------NNPKIILADEPT 170
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
LD + V +L+R ++K+ + ++VTH + A DR+I L +GKI
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTI---------IMVTHDPELAKYA-DRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 9e-57
Identities = 88/229 (38%), Positives = 135/229 (58%), Gaps = 23/229 (10%)
Query: 95 RNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152
+N+ S+ G + L +S I+ GE V I+GP+G+GKST+L+++ GLL P GEV + G
Sbjct: 3 KNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG 62
Query: 153 RKRAGLISDEEISGLRIGLVFQSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
+ L S +E+ ++GLVFQ+ F TV E V F L EN + +E+I E V+E L
Sbjct: 63 KDLTKL-SLKELRR-KVGLVFQNPDDQFFGPTVEEEVAFGL-ENLGLPEEEIEERVEEAL 119
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
VGL+G+ DR P LSGG K+RVA+A ++ +++P++LL DEPTAGLDP
Sbjct: 120 ELVGLEGLRDRSPFTLSGGQKQRVAIA-GVL------AMDPDILLLDEPTAGLDPAGRRE 172
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
+ +L++ + +G + ++VTH + DR+I L +GK
Sbjct: 173 LLELLKKLKAEG----------KTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 1e-56
Identities = 81/229 (35%), Positives = 113/229 (49%), Gaps = 51/229 (22%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ +NV K +G+K +L VS I GE V ++GPSG+GKST+L+ IAGL PD G + I
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G L + RIG+VFQ ALF LTV EN+ L
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL------------------- 101
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
SGG ++RVALAR++ ++P+VLL DEPT+ LDPI
Sbjct: 102 ----------------SGGQQQRVALARALA-------MDPDVLLLDEPTSALDPITRRE 138
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
V L++S+ + G+ V+VTH R DR++ L +GK
Sbjct: 139 VRALLKSLQA--QLGIT-------VVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 2e-56
Identities = 91/243 (37%), Positives = 134/243 (55%), Gaps = 22/243 (9%)
Query: 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+I+ N+ + K L+ VS +I GE V +IGP+G+GKST+LK++ GLL P GEV
Sbjct: 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELV 207
+ G + S E+ ++GLVFQ+ LF TV + V F L EN + E+I E V
Sbjct: 63 VDGLDTSSEKSLLELRQ-KVGLVFQNPDDQLFGP-TVEDEVAFGL-ENLGLPREEIEERV 119
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E L VGL+ + DR P LSGG K+RVA+A + + PE+LL DEPTAGLDP
Sbjct: 120 AEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA-------MGPEILLLDEPTAGLDPK 172
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
+ +L++ + ++G + ++VTH + DR++ L +GKI+ G
Sbjct: 173 GRRELLELLKKLKEEGGKTI---------IIVTHDLELVLEYADRVVVLDDGKILADGDP 223
Query: 328 HEF 330
E
Sbjct: 224 AEI 226
|
Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 8e-54
Identities = 93/262 (35%), Positives = 134/262 (51%), Gaps = 19/262 (7%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I NV K FG L +S I+ GE V ++GPSG GKST+L+IIAGL PD G + +
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE-QISELVKEN 210
GR + S+ + ++G VFQ ALF +TV +N+ F L + E +I V+E
Sbjct: 63 GRVLFDV-SNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEEL 121
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
L V L+G+ DR P++LSGG ++RVALAR+ +VEP+VLL DEP LD
Sbjct: 122 LRLVQLEGLADRYPAQLSGGQRQRVALARA-------LAVEPKVLLLDEPFGALDAKVRK 174
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE- 329
+ +R +H G+ + V VTH DR++ L +G+I G E
Sbjct: 175 ELRRWLRKLHD--RLGV-------TTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225
Query: 330 FTSSSNPIVQQFASGSLEGPIR 351
+ ++ V +F P
Sbjct: 226 YDHPASRFVARFLGEVNVLPGE 247
|
Length = 345 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 178 bits (455), Expect = 2e-53
Identities = 85/232 (36%), Positives = 130/232 (56%), Gaps = 23/232 (9%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ +NV KSFG +L+ V+ I GE V ++GPSG GKST+L++IAGL P GE+ I
Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
GR ++D I +VFQ+ AL+ +TV EN+ F L + + +I + VKE
Sbjct: 64 GRD----VTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGL-KLRGVPKAEIDKRVKEVA 118
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+GL+ + +R P +LSGG ++RVALAR+++ +P+V L DEP + LD
Sbjct: 119 KLLGLEHLLNRKPLQLSGGQRQRVALARALV-------RKPKVFLLDEPLSNLDA----K 167
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTH-QHSTIRRAVDRLIFLYEGKIV 322
+ L+RS KK L + VTH Q + A DR++ + +G+I
Sbjct: 168 LRVLMRSEIKKLHERLGTT-----TIYVTHDQVEAMTLA-DRIVVMNDGRIQ 213
|
Length = 338 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 6e-53
Identities = 85/253 (33%), Positives = 127/253 (50%), Gaps = 29/253 (11%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
R + K FG L VSF +R GE G+IGP+G GK+T+ +I+G L P G V G
Sbjct: 4 RGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGED 63
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENV---------GFLLYENSKMRDEQISE 205
GL EI+ L IG FQ LF LTV ENV LL ++ + + E
Sbjct: 64 ITGLPPH-EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+E L VGL + DR ELS G ++R+ +AR++ +P++LL DEP AGL+
Sbjct: 123 RAEELLERVGLADLADRPAGELSYGQQRRLEIARALA-------TDPKLLLLDEPAAGLN 175
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
P + + +LIR + ++G + ++V H + DR+ L +G+++ +G
Sbjct: 176 PEETEELAELIRELRERG----------ITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225
Query: 326 MTHEFTSSSNPIV 338
E +NP V
Sbjct: 226 TPDEV--RNNPRV 236
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 1e-51
Identities = 80/244 (32%), Positives = 127/244 (52%), Gaps = 25/244 (10%)
Query: 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
L++ +N+ SF L VSF I+ GE +G++G SG+GKST+ + I GLL P G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 147 EVYIRGRKRAGLI-SDEEISGLRIGLVFQ--SAALFDSLTVRENVGFLLYENSKM-RDEQ 202
+ G+ L +I I +VFQ ++L +T+ E + L + K+ + E
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 203 ISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
E V L VGL + V +R P ELSGG ++RVA+AR++ + P++L+ DEPT
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA-------LNPKLLIADEPT 173
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
+ LD + DL++ + + E GL + +TH + + DR+ +Y GKI
Sbjct: 174 SALDVSVQAQILDLLKKLQE--ELGLT-------LLFITHDLGVVAKIADRVAVMYAGKI 224
Query: 322 VWQG 325
V +G
Sbjct: 225 VEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 2e-51
Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 57/230 (24%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ RN+ K +G+K L +S + GE G++GP+G GK+T++KII GLL PD GE+ +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G + + E RIG + + +L+++LTVREN+
Sbjct: 61 G---KDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL----------------------- 94
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+LSGGMK+R+ALA++++ +PE+L+ DEPT+GLDP +
Sbjct: 95 --------------KLSGGMKQRLALAQALL-------HDPELLILDEPTSGLDPESRRE 133
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
+L+R + K+G + ++ +H R DR+ L G+I
Sbjct: 134 FWELLRELKKEG----------KTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 2e-50
Identities = 98/265 (36%), Positives = 150/265 (56%), Gaps = 26/265 (9%)
Query: 91 LIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK 145
+I+ NV K+FG+ L VS +I GE GIIG SG GKST+L++I L P
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 146 GEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
G V++ G+ L S+ E+ LR IG++FQ L S TV ENV F L E + + +I
Sbjct: 61 GSVFVDGQDLTAL-SEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPL-ELAGVPKAEI 118
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ V E L VGL DR P++LSGG K+RVA+AR++ + P++LL DE T+
Sbjct: 119 KQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL-------ANNPKILLCDEATSA 171
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323
LDP + + +L++ +++ E GL + V++TH+ ++R DR+ L +G++V
Sbjct: 172 LDPETTQSILELLKDINR--ELGL-------TIVLITHEMEVVKRICDRVAVLDQGRLVE 222
Query: 324 QGMTHE-FTSSSNPIVQQFASGSLE 347
+G E F + + I Q+F +LE
Sbjct: 223 EGTVSEVFANPKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 166 bits (424), Expect = 4e-50
Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 24/245 (9%)
Query: 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I+ +NV K FG+ L+ VS + GE GIIG SG GKST+++ I GL P G
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
V + G L S +E+ R IG++FQ L S TV ENV L E + + +I
Sbjct: 61 SVLVDGTDLTLL-SGKELRKARRRIGMIFQHFNLLSSRTVFENVALPL-EIAGVPKAEIE 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
E V E L VGL+ D P++LSGG K+RV +AR++ + P+VLL DE T+ L
Sbjct: 119 ERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL-------ANNPKVLLCDEATSAL 171
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
DP + + L+R +++ E GL + V++TH+ ++R DR+ + +G++V +
Sbjct: 172 DPETTQSILALLRDINR--ELGL-------TIVLITHEMEVVKRICDRVAVMEKGEVVEE 222
Query: 325 GMTHE 329
G E
Sbjct: 223 GTVEE 227
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 6e-50
Identities = 91/257 (35%), Positives = 135/257 (52%), Gaps = 30/257 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ RNV K FG+ L VS I GE V ++GPSG+GK+T+L++IAGL PD G +
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR---DEQISELVK 208
G +D + +G VFQ ALF +TV +NV F L + + +I V
Sbjct: 63 GED----ATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVH 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E L V L + DR P++LSGG ++RVALAR++ +VEP+VLL DEP LD
Sbjct: 119 ELLKLVQLDWLADRYPAQLSGGQRQRVALARAL-------AVEPKVLLLDEPFGALD--- 168
Query: 269 STVVEDL---IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ V ++L +R +H + ++ + V VTH DR++ + +G+I G
Sbjct: 169 AKVRKELRRWLRRLHDE--------LHVTT-VFVTHDQEEALEVADRVVVMNKGRIEQVG 219
Query: 326 MTHE-FTSSSNPIVQQF 341
E + ++P V F
Sbjct: 220 TPDEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 1e-48
Identities = 84/231 (36%), Positives = 123/231 (53%), Gaps = 21/231 (9%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ NV K +G L GVS I+ GE ++GPSG GK+T+L++IAG P GE+ +
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G+ L + + VFQ+ ALF LTV EN+ F L K+ +I E V E L
Sbjct: 61 GKDITNLPPHKR----PVNTVFQNYALFPHLTVFENIAFGL-RLKKLPKAEIKERVAEAL 115
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
V L+G +R PS+LSGG ++RVA+AR+++ EP+VLL DEP LD
Sbjct: 116 DLVQLEGYANRKPSQLSGGQQQRVAIARALVN-------EPKVLLLDEPLGALDLKLRKD 168
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
++ ++ + K E G+ ++V VTH DR+ + +GKI
Sbjct: 169 MQLELKRLQK--ELGI-------TFVFVTHDQEEALTMSDRIAVMNKGKIQ 210
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 2e-48
Identities = 81/221 (36%), Positives = 111/221 (50%), Gaps = 23/221 (10%)
Query: 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI-SDEEISGLRIGLVFQS 175
GE V I+GPSG GKST+L +IAG P GE+ I G ++ +S ++FQ
Sbjct: 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVS-----MLFQE 79
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235
LF LTV +N+G L K+ EQ E V+ A VGL G RLP ELSGG ++RV
Sbjct: 80 NNLFAHLTVAQNIGLGLSPGLKLNAEQ-REKVEAAAAQVGLAGFLKRLPGELSGGQRQRV 138
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295
ALAR ++ + +LL DEP + LDP + L+ + + + L
Sbjct: 139 ALARCLVREQP-------ILLLDEPFSALDPALRAEMLALVSQLCDERKMTL-------- 183
Query: 296 YVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNP 336
++VTH R DR++FL G+I QG T E S
Sbjct: 184 -LMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 3e-48
Identities = 80/260 (30%), Positives = 126/260 (48%), Gaps = 34/260 (13%)
Query: 89 DVLIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144
L+ RN+ +G H L VS +I GE +GI+G SG+GKST+ +++AGL P
Sbjct: 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60
Query: 145 KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE-----NSKMR 199
G + + G+ A + + +VFQ SL R VG +L E
Sbjct: 61 SGSILLDGKPLAPKKRAKAFYRP-VQMVFQDPYS--SLNPRRTVGRILSEPLRPHGLSKS 117
Query: 200 DEQISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
++I+EL L VGL DR P ELSGG ++R+A+AR++I EP++L+ D
Sbjct: 118 QQRIAEL----LDQVGLPPSFLDRRPHELSGGQRQRIAIARALI-------PEPKLLILD 166
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
EPT+ LD + +L+ + K+ Y+ ++H + + DR+ +
Sbjct: 167 EPTSALDVSVQAQILNLLLELKKERGLT---------YLFISHDLALVEHMCDRIAVMDN 217
Query: 319 GKIVWQGMTHE-FTSSSNPI 337
G+IV G T E + S+P
Sbjct: 218 GQIVEIGPTEELLSHPSHPY 237
|
Length = 252 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 6e-48
Identities = 84/250 (33%), Positives = 131/250 (52%), Gaps = 27/250 (10%)
Query: 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ N+ K++ K L+ VS I GE V +IGPSG GKST+L+ + GL+ P G V I
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENV--GFLLYENS-----KMRDE 201
G L + + LR IG++FQ L + L+V ENV G L ++ + +
Sbjct: 61 DGTDINKL-KGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 202 QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
+ + L VGL + +LSGG ++RVA+AR+++ +P+++L DEP
Sbjct: 120 EEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM-------QQPKLILADEPV 172
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
A LDP +S V DL++ +++ E G+ +V HQ R DR++ L +G+I
Sbjct: 173 ASLDPASSRQVMDLLKRINR--EEGIT-------VIVSLHQVDLAREYADRIVGLKDGRI 223
Query: 322 VWQGMTHEFT 331
V+ G E T
Sbjct: 224 VFDGPPAELT 233
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-47
Identities = 89/266 (33%), Positives = 140/266 (52%), Gaps = 27/266 (10%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+D R V + G + I +S + G+ I+GPSG GK+T+L++I G +APD GE+
Sbjct: 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF 66
Query: 151 RGRK-----RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
G R+ L + + R+ ++FQS ALF + V +NV + L E++++ +
Sbjct: 67 DGENIPAMSRSRLYTVRK----RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS 122
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V L AVGL+G +PSELSGGM +R ALAR+I ++EP+++++DEP G D
Sbjct: 123 TVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI-------ALEPDLIMFDEPFVGQD 175
Query: 266 PIASTVVEDLIRSV-HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
PI V+ LI + G + VVV+H + D + + KIV
Sbjct: 176 PITMGVLVKLISELNSALG----------VTCVVVSHDVPEVLSIADHAYIVADKKIVAH 225
Query: 325 GMTHEFTSSSNPIVQQFASGSLEGPI 350
G ++ +P V+QF G +GP+
Sbjct: 226 GSAQALQANPDPRVRQFLDGIADGPV 251
|
Length = 269 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 3e-47
Identities = 78/251 (31%), Positives = 124/251 (49%), Gaps = 30/251 (11%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ N+ S+G + +L +S + GE +IGP+G GKST+LK I GLL P GE+ I
Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDS---LTVRENVGFLLYENSKM---RDEQIS 204
G+ + LRIG V Q ++ D +TV++ V Y +++
Sbjct: 64 FGKP-----VRKRRKRLRIGYVPQKSS-VDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
E V E L VG++ + DR ELSGG K+RV LAR++ P++LL DEP G+
Sbjct: 118 EKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA-------QNPDLLLLDEPFTGV 170
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
D + DL++ + ++G+ + ++VTH + DR+I L ++
Sbjct: 171 DVAGQKEIYDLLKELRQEGK----------TVLMVTHDLGLVMAYFDRVICL-NRHLIAS 219
Query: 325 GMTHEFTSSSN 335
G E + N
Sbjct: 220 GPPEEVLTEEN 230
|
Length = 254 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 6e-47
Identities = 94/254 (37%), Positives = 135/254 (53%), Gaps = 28/254 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ N+ K FG L V+ ++ G V ++GPSG+GKST+L+IIAGL PD G + +
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G+ + +IG VFQ ALF LTVR+N+ F L E K +I V+E L
Sbjct: 61 GQD----ATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGL-EIRKHPKAKIKARVEELL 115
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
V L+G+ DR P++LSGG ++RVALAR++ +VEP+VLL DEP LD + V
Sbjct: 116 ELVQLEGLGDRYPNQLSGGQRQRVALARAL-------AVEPQVLLLDEPFGALD---AKV 165
Query: 272 VEDL---IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
++L +R +H + + V VTH DR++ + GKI G
Sbjct: 166 RKELRSWLRKLHDEVH---------VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPD 216
Query: 329 E-FTSSSNPIVQQF 341
E + +NP V F
Sbjct: 217 EVYDHPANPFVMSF 230
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 2e-46
Identities = 89/263 (33%), Positives = 128/263 (48%), Gaps = 26/263 (9%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ NV K +G K + V+ I GE + +IGPSG+GK+T LK+I L+ P GE+ I
Sbjct: 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G ISD + LR IG V Q LF LTV EN+ + + E+I +
Sbjct: 61 DGED----ISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP-KLLGWDKERIKKRAD 115
Query: 209 ENLAAVGL--KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
E L VGL DR P ELSGG ++RV +AR++ +P +LL DEP LDP
Sbjct: 116 ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA-------ADPPILLMDEPFGALDP 168
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326
I +++ I+ + K+ + V VTH + DR+ + G+IV
Sbjct: 169 ITRKQLQEEIKELQKELG---------KTIVFVTHDIDEALKLADRIAVMDAGEIVQYDT 219
Query: 327 THEF-TSSSNPIVQQFASGSLEG 348
E + +N V+ F S G
Sbjct: 220 PDEILANPANDFVEDFFGESERG 242
|
Length = 309 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 4e-46
Identities = 88/235 (37%), Positives = 120/235 (51%), Gaps = 22/235 (9%)
Query: 91 LIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+I NV K++ LR VSF I GE V + GPSG GKST+LK+I G P +G++
Sbjct: 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
+ G + EI LR IG+VFQ L TV ENV L K E I V
Sbjct: 61 VNGHDL-SRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPRE-IRRRV 118
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E L VGLK LPS+LSGG ++RVA+AR+I+ +P VLL DEPT LDP
Sbjct: 119 SEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN-------QPAVLLADEPTGNLDPD 171
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
S + L +++ G + ++ TH + R R++ L +G++V
Sbjct: 172 LSWEIMRLFEEINRLG----------TTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (398), Expect = 4e-46
Identities = 82/263 (31%), Positives = 129/263 (49%), Gaps = 30/263 (11%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
L++ R + K FG + VS ++R GE VG+IGP+G GK+T+ +I G P G V
Sbjct: 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV-----------GFLLYENSK 197
RGR GL I+ L I FQ LF LTV ENV G L ++
Sbjct: 62 IFRGRDITGL-PPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRAR 120
Query: 198 MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
+ + E +E L VGL + DR LS G ++R+ +AR++ + +P++LL
Sbjct: 121 KEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARAL-------ATQPKLLLL 173
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317
DEP AGL+P + + +LIR + +G + +++ H + DR++ L
Sbjct: 174 DEPAAGLNPEETEELAELIRELRDRG---------GVTILLIEHDMKLVMGLADRIVVLN 224
Query: 318 EGKIVWQGMTHEFTSSSNPIVQQ 340
G+++ +G E +NP V +
Sbjct: 225 YGEVIAEGTPEEVR--NNPRVIE 245
|
Length = 250 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 7e-45
Identities = 87/233 (37%), Positives = 122/233 (52%), Gaps = 22/233 (9%)
Query: 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+I+ NV K++ G L VS IR GE + + GPSG GK+T+LK++ G L P +G+V
Sbjct: 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G L ++ LR IG+VFQ L TV ENV L K E I V
Sbjct: 61 IAGEDVNRL-RGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKERE-IQRRV 118
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
L VGL+ D P +LSGG ++RVA+AR+I+ P +LL DEPT LDP
Sbjct: 119 GAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIV-------NSPPLLLADEPTGNLDPD 171
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
S + DL++ ++K+G + +V TH S + R R+I L +G+
Sbjct: 172 LSERILDLLKRLNKRG----------TTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 2e-44
Identities = 85/274 (31%), Positives = 143/274 (52%), Gaps = 38/274 (13%)
Query: 85 EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144
E I+ R++ +G+KH L+ ++ I + +IGPSG GKST+L+ + +
Sbjct: 1 ETMKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI 60
Query: 145 -----KGEVYIRGRKRAGLISDEEIS--GLR--IGLVFQSAALFDSLTVRENVGFLLYEN 195
+GEV + G+ I D ++ LR +G+VFQ F +++ +NV + L
Sbjct: 61 PGARVEGEVLLDGKN----IYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGL-RL 114
Query: 196 SKMRDEQISELVKENLAAVGLKG-VEDRL---PSELSGGMKKRVALARSIIFDNTKESVE 251
++D+++ E+V+ +L L V+DRL LSGG ++R+ +AR++ +V+
Sbjct: 115 HGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL-------AVK 167
Query: 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311
PEVLL DEPT+ LDPI++ +E+LI + KK + V+VTH R D
Sbjct: 168 PEVLLMDEPTSALDPISTLKIEELITELKKK-----------YTIVIVTHNMQQAARVSD 216
Query: 312 RLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASG 344
F Y G++V G T + FT+ + + + SG
Sbjct: 217 YTAFFYLGELVEFGPTDKIFTNPKHKRTEDYISG 250
|
Length = 253 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 1e-43
Identities = 81/224 (36%), Positives = 122/224 (54%), Gaps = 23/224 (10%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
N+ K FG+K IL ++ I G+ IIG SG+GKST+L II L D G+VY+ G++
Sbjct: 3 NISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQET 62
Query: 156 AGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGF-LLYENSKMRDEQISELVKENLA 212
L S + R +G +FQ+ AL ++ TV EN+ L Y+ ++++ E KE L
Sbjct: 63 PPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKR--EKKKEALE 120
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VGL + ELSGG ++RVALAR+I+ P ++L DEPT LDP V
Sbjct: 121 KVGLNLKLKQKIYELSGGEQQRVALARAIL-------KPPPLILADEPTGSLDPKNRDEV 173
Query: 273 EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316
DL+ ++ +G+ + ++VTH ++A DR+I L
Sbjct: 174 LDLLLELNDEGK----------TIIIVTHDPEVAKQA-DRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-43
Identities = 87/257 (33%), Positives = 132/257 (51%), Gaps = 29/257 (11%)
Query: 92 IDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ NV K +G + ++ +I GE + +IGPSG+GK+T +K+I L+ P GE++I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G I +++ LR IG V Q LF +TV EN+ L+ + K E+I E
Sbjct: 61 DGED----IREQDPVELRRKIGYVIQQIGLFPHMTVEENIA-LVPKLLKWPKEKIRERAD 115
Query: 209 ENLAAVGL--KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
E LA VGL DR P ELSGG ++RV +AR++ + +P +LL DEP LDP
Sbjct: 116 ELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL-------AADPPLLLMDEPFGALDP 168
Query: 267 IASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
I +++ + + ++ G+ + V VTH R DR+ + G+IV G
Sbjct: 169 ITRDQLQEEFKRLQQELGK----------TIVFVTHDIDEAFRLADRIAIMKNGEIVQVG 218
Query: 326 MTHEF-TSSSNPIVQQF 341
E S +N V +F
Sbjct: 219 TPDEILRSPANDFVAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-43
Identities = 87/252 (34%), Positives = 129/252 (51%), Gaps = 18/252 (7%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ +NV K FG +L + I GE V IIGPSG+GKST+L+ I L G++ +
Sbjct: 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
G K DE + G+VFQ LF LT ENV F E+ + +E
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAREL 120
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
LA VGL PSELSGG ++RVA+AR++ +V+P+++L+DEPT+ LDP
Sbjct: 121 LAKVGLAERAHHYPSELSGGQQQRVAIARAL-------AVKPKLMLFDEPTSALDPELRH 173
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
V +++ LA G + V+VTH+ + RLIF+ +G+I G
Sbjct: 174 EVLKVMQD--------LAEEG--MTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
Query: 331 -TSSSNPIVQQF 341
+ + +Q+F
Sbjct: 224 IKNPPSQRLQEF 235
|
Length = 240 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 5e-43
Identities = 92/278 (33%), Positives = 136/278 (48%), Gaps = 46/278 (16%)
Query: 92 IDCRNVYKSFGEK---------------HIL---------RGVSFKIRHGEAVGIIGPSG 127
I + +YK FG+ IL VS +R GE I+G SG
Sbjct: 1 IKIKGLYKIFGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSG 60
Query: 128 TGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTV 184
+GKST+L+ I L+ P G+V I G+ A +S +E+ LR I +VFQS AL TV
Sbjct: 61 SGKSTLLRCINRLIEPTSGKVLIDGQDIAA-MSRKELRELRRKKISMVFQSFALLPHRTV 119
Query: 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244
ENV F L E + + E E L VGL+G E + P ELSGGM++RV LAR++ D
Sbjct: 120 LENVAFGL-EVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVD 178
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304
P++LL DE + LDP+ ++D + + + + + V +TH
Sbjct: 179 -------PDILLMDEAFSALDPLIRREMQDELLRLQAELQK---------TIVFITHDLD 222
Query: 305 TIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQF 341
R DR+ + +G++V G E T+ +N V++F
Sbjct: 223 EALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREF 260
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 7e-43
Identities = 86/249 (34%), Positives = 125/249 (50%), Gaps = 24/249 (9%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
N+ K FG L+ +S ++ GE V ++GPSG GK+T+L+IIAGL G +Y GR
Sbjct: 8 DNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD 67
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
I+ G+VFQS ALF +LTV +N+ + L N M +++E V E L V
Sbjct: 68 ----ITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLK-NRGMGRAEVAERVAELLDLV 122
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL G E + P +LSGG ++RVALAR++ P +LL DEP + LD
Sbjct: 123 GLPGSERKYPGQLSGGQQQRVALARALA-------TSPGLLLLDEPLSALDA-------- 167
Query: 275 LIRSVHKKGE-NGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTS 332
+R H + E L + + ++VTH DR++ + G I G E +
Sbjct: 168 RVR-EHLRTEIRQLQRRLGVTT-IMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225
Query: 333 SSNPIVQQF 341
+ P V F
Sbjct: 226 PATPFVADF 234
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 1e-42
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 12/171 (7%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
NV K FG L ++ I GE V ++GPSG GK+T L++IAGL P G +YI GR
Sbjct: 4 ENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR- 62
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
++D I +VFQ+ AL+ +TV +N+ F L + K+ ++I E V+E +
Sbjct: 63 ---DVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGL-KLRKVPKDEIDERVREVAELL 118
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
++ + DR P +LSGG ++RVAL R+I+ EP+V L DEP + LD
Sbjct: 119 QIEHLLDRKPKQLSGGQRQRVALGRAIV-------REPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 2e-42
Identities = 84/264 (31%), Positives = 137/264 (51%), Gaps = 29/264 (10%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---K 145
I+ N+ +GEK L+ ++ I + +IGPSG GKST+L+ + + L P +
Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 146 GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
G+V G+ D R+G+VFQ F +++ +N+ + + +++ E
Sbjct: 61 GKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKELDE 119
Query: 206 LVKENLAAVGL-KGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
+V+E+L L V+DRL LSGG ++R+ +AR++ +VEPEVLL DEPT
Sbjct: 120 IVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL-------AVEPEVLLLDEPT 172
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
+ LDPIA+ +E+LI+ + KK + V+VTH R DR F Y+G++
Sbjct: 173 SALDPIATGKIEELIQELKKK-----------YTIVIVTHNMQQAARISDRTAFFYDGEL 221
Query: 322 VWQGMTHE-FTSSSNPIVQQFASG 344
V G T + FT+ + + SG
Sbjct: 222 VEYGPTEQIFTNPKEKRTEDYISG 245
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-42
Identities = 83/225 (36%), Positives = 117/225 (52%), Gaps = 24/225 (10%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
GE IL+GV ++ GE V I+GPSG+GKST+L ++AGL P GEV + G+ L +
Sbjct: 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL-DE 79
Query: 162 EEISGLR---IGLVFQSAALFDSLTVRENVGF-LLYENSKMRDEQISELVKENLAAVGLK 217
+ + LR +G VFQS L +LT ENV L D + K L AVGL
Sbjct: 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSR--AGAKALLEAVGLG 137
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
P++LSGG ++RVALAR+ + P+VL DEPT LD + DL+
Sbjct: 138 KRLTHYPAQLSGGEQQRVALARAF-------AGRPDVLFADEPTGNLDRATGDKIADLLF 190
Query: 278 SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
++++ E G + V+VTH R DR + L G++V
Sbjct: 191 ALNR--ERG-------TTLVLVTHDPQLAARC-DRQLRLRSGRLV 225
|
Length = 228 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-42
Identities = 89/245 (36%), Positives = 131/245 (53%), Gaps = 27/245 (11%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+++ N+ +G K IL +SF I GE GI+GP+G+GKST+LK +AGLL P GEV +
Sbjct: 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM------RDEQIS 204
G+ A L S +E+ ++ V QS + LTV E V Y + + DE+I
Sbjct: 62 DGKDIASL-SPKEL-AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI- 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
V+E L +GL+ + DR ELSGG ++RV +AR++ E +LL DEPT+ L
Sbjct: 119 --VEEALELLGLEHLADRPVDELSGGERQRVLIARALA-------QETPILLLDEPTSHL 169
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
D V +L+R ++++ + V+V H + R D LI L +GKIV Q
Sbjct: 170 DIAHQIEVLELLRDLNREKGLTV---------VMVLHDLNLAARYADHLILLKDGKIVAQ 220
Query: 325 GMTHE 329
G E
Sbjct: 221 GTPEE 225
|
Length = 258 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 4e-42
Identities = 79/266 (29%), Positives = 131/266 (49%), Gaps = 36/266 (13%)
Query: 81 LFEPEDDGDVLIDCRNVYKSF-----------GEKHILRGVSFKIRHGEAVGIIGPSGTG 129
+ L+ RN+ K + GE + VSF +R GE +G++G SG+G
Sbjct: 270 PRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSG 329
Query: 130 KSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL--VFQS--AALFDSLTVR 185
KST+ +I+AGLL P G + G+ ++ E+ LR + VFQ ++L +TV
Sbjct: 330 KSTLARILAGLLPPSSGSIIFDGQDLD--LTGGELRRLRRRIQMVFQDPYSSLNPRMTVG 387
Query: 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244
+ + L + + V E L VGL DR P ELSGG ++RVA+AR++
Sbjct: 388 DILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALA-- 445
Query: 245 NTKESVEPEVLLYDEPTAGLDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303
+EP++L+ DEP + LD + + V+ L + G +Y+ ++H
Sbjct: 446 -----LEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG----------LTYLFISHDL 490
Query: 304 STIRRAVDRLIFLYEGKIVWQGMTHE 329
+ +R DR+ +Y+G+IV +G T +
Sbjct: 491 AVVRYIADRVAVMYDGRIVEEGPTEK 516
|
Length = 539 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 1e-41
Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 26/231 (11%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
++ K++G+K +L +S ++ GE G +GP+G GK+T +KII GL+ PD GE+ G+
Sbjct: 4 NDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS 63
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
I RIG + ++ + +LT REN L ++ + E L V
Sbjct: 64 YQKNIEALR----RIGALIEAPGFYPNLTAREN--LRLLARLLGIRKKR---IDEVLDVV 114
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GLK + S GMK+R+ +A +++ + P++L+ DEPT GLDP + +
Sbjct: 115 GLKDSAKKKVKGFSLGMKQRLGIALALLGN-------PDLLILDEPTNGLDPDGIKELRE 167
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
LI S+ +G + ++ +H S I++ DR+ + +GK++ +G
Sbjct: 168 LILSLRDQG----------ITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 2e-41
Identities = 93/269 (34%), Positives = 141/269 (52%), Gaps = 38/269 (14%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-----G 146
I+ +N+ K F + +L G+ +++ GE V IIGPSG+GK+T+L+ I L P+ G
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63
Query: 147 EVYIRG----RKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENV--GFLLYENSKM 198
++ I ++ GLI LR +G VFQ+ LF TV EN+ G ++ +
Sbjct: 64 DITIDTARSLSQQKGLIRQ-----LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GE 116
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
E+ + +E LA VGL G E P LSGG ++RVA+AR++ ++ PEV+L+D
Sbjct: 117 PKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARAL-------AMRPEVILFD 169
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
EPT+ LDP V + IR + ++ + V+VTH+ S R DR IF+ +
Sbjct: 170 EPTSALDPELVGEVLNTIRQLAQEKR----------TMVIVTHEMSFARDVADRAIFMDQ 219
Query: 319 GKIVWQGMTHE-FTSSSNPIVQQFASGSL 346
G+IV QG F P +QF L
Sbjct: 220 GRIVEQGPAKALFADPQQPRTRQFLEKFL 248
|
Length = 250 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 5e-41
Identities = 65/181 (35%), Positives = 102/181 (56%), Gaps = 18/181 (9%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
L++ R + KSF K ++ + I +GE + ++GPSG GK+T+L++IAG PD G
Sbjct: 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR---DEQIS 204
+ + G+ + ++ + VFQS ALF +TV ENV F L +M+ +I+
Sbjct: 71 IMLDGQDITHVPAENR----HVNTVFQSYALFPHMTVFENVAFGL----RMQKTPAAEIT 122
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
V E L V L+ R P +LSGG ++RVA+AR+++ N +P+VLL DE + L
Sbjct: 123 PRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV--N-----KPKVLLLDESLSAL 175
Query: 265 D 265
D
Sbjct: 176 D 176
|
Length = 375 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 6e-41
Identities = 83/210 (39%), Positives = 114/210 (54%), Gaps = 23/210 (10%)
Query: 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL-ISDEEISGLRIGLVFQS 175
GE I+GPSG+GKST+L +IAG P G V I G +D +S ++FQ
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVS-----MLFQE 78
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235
LF LTV +NVG L K+ E + ++ LA VGL G+E RLP ELSGG ++RV
Sbjct: 79 NNLFAHLTVEQNVGLGLSPGLKLTAED-RQAIEVALARVGLAGLEKRLPGELSGGERQRV 137
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295
ALAR ++ D +P VLL DEP A LDP + DL+ +H + + +
Sbjct: 138 ALARVLVRD------KP-VLLLDEPFAALDPALRAEMLDLVLDLHAETKMTV-------- 182
Query: 296 YVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
++VTHQ +R R++FL G+I QG
Sbjct: 183 -LMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 6e-41
Identities = 81/251 (32%), Positives = 128/251 (50%), Gaps = 27/251 (10%)
Query: 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+++ N+ K + K L+ ++ I GE V IIGPSG GKST+L+ I L+ P G +
Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENV--GFLLYEN-----SKMRD 200
+ G L +++ LR IG++FQ L + LTV ENV G L Y+
Sbjct: 61 LEGTDITKL-RGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
E+ E L VGL + +LSGG ++RVA+AR++ +P+++L DEP
Sbjct: 120 EEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA-------QQPDLILADEP 172
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
A LDP S V D ++ ++K E+G+ + ++ HQ ++ DR++ L G+
Sbjct: 173 IASLDPKTSKQVMDYLKRINK--EDGI-------TVIINLHQVDLAKKYADRIVGLKAGE 223
Query: 321 IVWQGMTHEFT 331
IV+ G E
Sbjct: 224 IVFDGAPSELD 234
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 1e-40
Identities = 91/262 (34%), Positives = 141/262 (53%), Gaps = 25/262 (9%)
Query: 92 IDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
I+ +N+ K F H L VS I GE G+IG SG GKST+++ I L P G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
V + G+ L S++E+ R IG++FQ L S TV +NV L E + +I
Sbjct: 62 VLVDGQDLTAL-SEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPL-ELAGTPKAEIKA 119
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V E L VGL DR P++LSGG K+RVA+AR++ + P+VLL DE T+ LD
Sbjct: 120 RVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL-------ASNPKVLLCDEATSALD 172
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
P + + +L++ +++ E GL + V++TH+ ++R DR+ + G++V QG
Sbjct: 173 PATTRSILELLKDINR--ELGL-------TIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
Query: 326 MTHE-FTSSSNPIVQQFASGSL 346
E F+ +P+ ++F +L
Sbjct: 224 TVSEVFSHPKHPLTREFIQSTL 245
|
Length = 343 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 2e-40
Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 66/233 (28%)
Query: 92 IDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
I+ +NV S+ + +L+ VS I+ GE V I+GPSG+GKST+LK++ L P GE+
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + D ++ LR I V Q LF T+REN+
Sbjct: 61 IDGVD----LRDLDLESLRKNIAYVPQDPFLFSG-TIRENI------------------- 96
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
LSGG ++R+A+AR+++ +P +L+ DE T+ LDP
Sbjct: 97 -------------------LSGGQRQRIAIARALL-------RDPPILILDEATSALDPE 130
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
++ + +R++ K + +V+ H+ STIR A DR+I L +G+
Sbjct: 131 TEALILEALRALAKG-----------KTVIVIAHRLSTIRDA-DRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-40
Identities = 68/226 (30%), Positives = 103/226 (45%), Gaps = 71/226 (31%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
N+ +G + L VS ++ GE V ++GP+G+GKST+L+ IAGLL P GE+ I G+
Sbjct: 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKD 62
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
A L +E RIG V Q
Sbjct: 63 IAKLPLEELRR--RIGYVPQ---------------------------------------- 80
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
LSGG ++RVALAR+++ + P++LL DEPT+GLDP + + +
Sbjct: 81 ------------LSGGQRQRVALARALLLN-------PDLLLLDEPTSGLDPASRERLLE 121
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
L+R + ++G + ++VTH A DR+I L +GK
Sbjct: 122 LLRELAEEG----------RTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 3e-40
Identities = 77/253 (30%), Positives = 133/253 (52%), Gaps = 29/253 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ N+ K +G++ ++ GVS ++ GE VG++GP+G GK+T +I GL+ PD G++ +
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 152 GRKRAGLISDEEI---SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G+ I+ + + L IG + Q A++F LTV EN+ +L + E+ +L +
Sbjct: 61 GQD----ITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL-E 115
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E L + + S LSGG ++RV +AR++ P+ LL DEP AG+DPIA
Sbjct: 116 ELLEEFHITHLRKSKASSLSGGERRRVEIARALA-------TNPKFLLLDEPFAGVDPIA 168
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVT-HQHSTIRRAVDRLIFLYEGKIVWQGMT 327
V+D+ + + + G+ V++T H DR +YEGK++ +G
Sbjct: 169 ---VQDIQKIIKILKDRGIG--------VLITDHNVRETLSITDRAYIIYEGKVLAEGTP 217
Query: 328 HEFTSSSNPIVQQ 340
E +N +V++
Sbjct: 218 EEIA--ANELVRK 228
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 4e-40
Identities = 81/233 (34%), Positives = 118/233 (50%), Gaps = 22/233 (9%)
Query: 92 IDCRNVYKSFGEKHI-LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ NV K++ L G++ I GE V ++GPSG GKST+LK+I P G + +
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G+ + L I LR IG+VFQ L V ENV F L E + + +I + V
Sbjct: 61 NGQDVSDL-RGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL-EVTGVPPREIRKRVP 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
L VGL LP+ELSGG ++RVA+AR+I+ P +L+ DEPT LDP
Sbjct: 119 AALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS-------PTILIADEPTGNLDPDT 171
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
+ + +L++ ++K G + VV TH + R+I L GK+
Sbjct: 172 TWEIMNLLKKINKAG----------TTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 7e-40
Identities = 79/258 (30%), Positives = 130/258 (50%), Gaps = 35/258 (13%)
Query: 91 LIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK- 145
L++ +N+ SF G + GVSF+++ GE +GI+G SG+GKS + K I GLL
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 146 ----GEVYIRGRKRAGLISDEEISGLR---IGLVFQ--SAALFDSLTVRENVGFLLYENS 196
GE+ G+ L S++E+ +R I ++FQ +L +T+ + + +L +
Sbjct: 61 RIVGGEILFDGKDLLSL-SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG 119
Query: 197 KM-RDEQISELVKENLAAVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEP 252
K ++ E E L VG+ E RL P ELSGGM++RV +A ++ P
Sbjct: 120 KGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALAL-------NP 172
Query: 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
++L+ DEPT LD + DL++ + + E G A +++TH + DR
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQR--EKGTA-------LILITHDLGVVAEIADR 223
Query: 313 LIFLYEGKIVWQGMTHEF 330
+ +Y G+IV +G E
Sbjct: 224 VAVMYAGRIVEEGPVEEI 241
|
Length = 316 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 3e-39
Identities = 85/256 (33%), Positives = 134/256 (52%), Gaps = 33/256 (12%)
Query: 89 DVLIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
+++I+ +N+ K++ H L+ V+ +I GE V IIGPSG GKST+L+ + GL+ P GE
Sbjct: 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 148 VYIRGRKRAGLISDEEISGLR-IGLVFQSAALFDSLTVRENV--GFLLYEN--------- 195
+ G + L E R IG++FQ L L+V ENV G L Y +
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255
SK Q + L VG+ + S LSGG ++RVA+AR+++ P+++
Sbjct: 121 SKEDKAQALDA----LERVGILDKAYQRASTLSGGQQQRVAIARALVQQ-------PKII 169
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
L DEP A LDP ++ V D+++ +++ E+G+ +V HQ ++ DR+I
Sbjct: 170 LADEPVASLDPESAKKVMDILKDINQ--EDGIT-------VIVNLHQVDLAKKYADRIIG 220
Query: 316 LYEGKIVWQGMTHEFT 331
L G+IV+ G E T
Sbjct: 221 LKAGRIVFDGPASELT 236
|
Length = 258 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 3e-39
Identities = 90/284 (31%), Positives = 139/284 (48%), Gaps = 54/284 (19%)
Query: 90 VLIDCRNVYKSFG---EKHI---------------------LRGVSFKIRHGEAVGIIGP 125
V I+ +NVYK FG ++ + + S + GE I+G
Sbjct: 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGL 62
Query: 126 SGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSL 182
SG+GKST+++++ L+ P +GE+ + G+ A +S E+ LR I +VFQS AL
Sbjct: 63 SGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK-LSAAELRELRRKKISMVFQSFALLPHR 121
Query: 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242
TV ENV F L E + + E E L VGL+G D+ P+ELSGGM++RV LAR++
Sbjct: 122 TVLENVAFGL-EVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARAL- 179
Query: 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVED----LIRSVHKKGENGLANPGNIASYVV 298
+ +P++LL DE + LDP+ T ++D L + K + V
Sbjct: 180 ------ANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK-------------TIVF 220
Query: 299 VTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQF 341
+TH R DR+ + +G+IV G E + +N V+ F
Sbjct: 221 ITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDF 264
|
Length = 386 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 8e-39
Identities = 73/247 (29%), Positives = 116/247 (46%), Gaps = 32/247 (12%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ N+ +G+ IL GVS + GE V ++G +G GK+T+LK I GLL P G +
Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
GR GL E + IG V + +F LTV EN LL ++ R + K L
Sbjct: 61 GRDITGL-PPHERARAGIGYVPEGRRIFPELTVEEN--LLLGAYARRRAK-----RKARL 112
Query: 212 AAV-----GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
V LK +L LSGG ++ +A+AR+++ P++LL DEP+ GL P
Sbjct: 113 ERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM-------SRPKLLLLDEPSEGLAP 165
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST-IRRAVDRLIFLYEGKIVWQG 325
+ + IR + +G + +++ Q++ DR L G++V +G
Sbjct: 166 KIVEEIFEAIRELRDEG---------VT--ILLVEQNARFALEIADRAYVLERGRVVLEG 214
Query: 326 MTHEFTS 332
E +
Sbjct: 215 TAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 9e-39
Identities = 86/234 (36%), Positives = 132/234 (56%), Gaps = 27/234 (11%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+N+ K FG ++ ++ I+ G V ++GPSG GK+T+L+++AGL P +G+++I G
Sbjct: 10 KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGED 69
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR---DEQISELVKENL 211
++ I I +VFQS ALF +++ ENVG+ L KM E+ + VKE L
Sbjct: 70 ----VTHRSIQQRDICMVFQSYALFPHMSLGENVGYGL----KMLGVPKEERKQRVKEAL 121
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
V L G EDR ++SGG ++RVALAR++I ++P+VLL+DEP + LD
Sbjct: 122 ELVDLAGFEDRYVDQISGGQQQRVALARALI-------LKPKVLLFDEPLSNLDA----- 169
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+L RS+ +K L NI S + VTH S D +I + +GKI+ G
Sbjct: 170 --NLRRSMREKIRE-LQQQFNITS-LYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219
|
Length = 351 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 1e-38
Identities = 70/236 (29%), Positives = 120/236 (50%), Gaps = 27/236 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ N+ K +G+K L GVS + G G++GP+G GK+T+++I+A L P G + I
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKE 209
G+ L +++ RIG + Q ++ + TVRE FL Y + +++ V E
Sbjct: 60 GQD--VLKQPQKLRR-RIGYLPQEFGVYPNFTVRE---FLDYIAWLKGIPSKEVKARVDE 113
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
L V L + LSGGM++RV +A++++ D P +L+ DEPTAGLDP
Sbjct: 114 VLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGD-------PSILIVDEPTAGLDPEER 166
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+L+ + GE+ ++ TH + +++ L +GK+V++G
Sbjct: 167 IRFRNLLSEL---GED--------RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-38
Identities = 83/260 (31%), Positives = 131/260 (50%), Gaps = 34/260 (13%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I + +G L ++ GE + ++GPSG GKS++L+++ L P G + I
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 152 GRK--RAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYEN----SKMRDEQI 203
G + SD+ I LR +G+VFQ L+ LTV++N L E + +Q
Sbjct: 63 GNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN----LIEAPCRVLGLSKDQA 118
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
++ L + LK DR P LSGG ++RVA+AR+++ +EP+VLL+DEPTA
Sbjct: 119 LARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM-------MEPQVLLFDEPTAA 171
Query: 264 LDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
LDP I + +V +IR + + G + V+VTH+ R+ R++++ G IV
Sbjct: 172 LDPEITAQIV-SIIRELAETG----------ITQVIVTHEVEVARKTASRVVYMENGHIV 220
Query: 323 WQGMTHEFTSSSNPIVQQFA 342
QG FT P + F
Sbjct: 221 EQGDASCFT---QPQTEAFK 237
|
Length = 242 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 1e-38
Identities = 75/224 (33%), Positives = 111/224 (49%), Gaps = 33/224 (14%)
Query: 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159
S+G +L VSF+++ GE + I+GP+G GKST+LK I GLL P G + + G+
Sbjct: 8 SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK-- 65
Query: 160 SDEEISGLRIGLVFQSA-ALFDS-LTVRENVGFLLYENSKMRDEQI-----SELVKENLA 212
RIG V Q D ++VR+ V LY + V E L
Sbjct: 66 -----ERKRIGYVPQRRSIDRDFPISVRDVVLMGLY--GHKGLFRRLSKADKAKVDEALE 118
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VGL + DR ELSGG ++RV LAR+++ D P++LL DEP AG+DP +
Sbjct: 119 RVGLSELADRQIGELSGGQQQRVLLARALVQD-------PDLLLLDEPFAGVDPKTQEDI 171
Query: 273 EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316
+L+R + ++G + +VVTH + DR++ L
Sbjct: 172 YELLRELRREG----------MTILVVTHDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-38
Identities = 86/264 (32%), Positives = 142/264 (53%), Gaps = 29/264 (10%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ +++K +GE +L+GVS + G+ + IIG SG+GKST L+ I L P G + +
Sbjct: 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVN 66
Query: 152 G------RKRAGLI---SDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
G R + G + ++ LR +G+VFQ L+ +TV ENV +
Sbjct: 67 GEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSK 126
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ E ++ LA VG+ D P+ LSGG ++RVA+AR++ ++EPEV+L+DEP
Sbjct: 127 AEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL-------AMEPEVMLFDEP 179
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
T+ LDP +V ++++ + E G + VVVTH+ R +IFL++GK
Sbjct: 180 TSALDP---ELVGEVLKVMQDLAEEG-------RTMVVVTHEMGFARDVSSHVIFLHQGK 229
Query: 321 IVWQGMTHE-FTSSSNPIVQQFAS 343
I +G + F + +P ++QF S
Sbjct: 230 IEEEGPPEQVFGNPQSPRLKQFLS 253
|
Length = 256 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-38
Identities = 79/256 (30%), Positives = 129/256 (50%), Gaps = 24/256 (9%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I + +G L ++ GE + ++GPSG GKS++L+++ L P G + I
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 152 GRK--RAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
G + SD+ I LR +G+VFQ L+ LTV+EN+ + +Q
Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
++ L + LK DR P LSGG ++RVA+AR+++ +EP+VLL+DEPTA LDP
Sbjct: 123 EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM-------MEPQVLLFDEPTAALDPE 175
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
+ + +I+ + + G + V+VTH+ R+ R++++ G IV QG
Sbjct: 176 ITAQIVSIIKELAETG----------ITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
Query: 328 HEFTSSSNPIVQQFAS 343
FT P + F +
Sbjct: 226 SCFT---EPQTEAFKN 238
|
Length = 242 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 3e-38
Identities = 66/190 (34%), Positives = 103/190 (54%), Gaps = 19/190 (10%)
Query: 95 RNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152
RN+ K++ K + +S + GE G++G +G GK+T LK++ G L P G YI G
Sbjct: 4 RNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYING 63
Query: 153 RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR---DEQISELVKE 209
+ +D + + +G Q ALFD LTVRE++ F ++++ +I E V+
Sbjct: 64 Y---SIRTDRKAARQSLGYCPQFDALFDELTVREHLRFY----ARLKGLPKSEIKEEVEL 116
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
L +GL ++ LSGGMK++++LA ++I P VLL DEPT+GLDP +
Sbjct: 117 LLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGG-------PSVLLLDEPTSGLDPASR 169
Query: 270 TVVEDLIRSV 279
+ DLI V
Sbjct: 170 RAIWDLILEV 179
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 3e-38
Identities = 82/240 (34%), Positives = 126/240 (52%), Gaps = 28/240 (11%)
Query: 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
L+ C N+ K + E +L+GVS I GE V I+G SG+GKST+L ++ GL P G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGF-LLYENSKMRDEQ 202
EV G+ + L S E + LR +G ++Q L T ENV LL K ++
Sbjct: 61 EVLFNGQSLSKL-SSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLI--GKKSVKE 117
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
E E L VGL+ + PSELSGG ++RVA+AR+++ +P ++L DEPT
Sbjct: 118 AKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV-------NQPSLVLADEPTG 170
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
LD + ++ DL+ + N N S++VVTH ++ DR++ + +G++
Sbjct: 171 NLDNNNAKIIFDLMLEL-----NRELN----TSFLVVTHDLELAKKL-DRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 4e-38
Identities = 75/215 (34%), Positives = 106/215 (49%), Gaps = 29/215 (13%)
Query: 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL------RIG 170
E GI G SG GKST+L+ IAGL PD G + + G ++ D +IG
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT----VLFDSRKKINLPPQQRKIG 78
Query: 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGG 230
LVFQ ALF L VREN+ F L D V E L +GL + +R P++LSGG
Sbjct: 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRI---SVDELLDLLGLDHLLNRYPAQLSGG 135
Query: 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANP 290
K+RVALAR++ +PE+LL DEP + LD + ++ + K
Sbjct: 136 EKQRVALARALA-------AQPELLLLDEPFSALDRALRLQLLPELKQIKKN-------- 180
Query: 291 GNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
NI + VTH S DR++ + +G++ + G
Sbjct: 181 LNIPV-IFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 6e-38
Identities = 74/251 (29%), Positives = 122/251 (48%), Gaps = 30/251 (11%)
Query: 89 DVLIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144
L++ N+ F G +R VSF++ GE +GI+G SG+GKST+ + GLL
Sbjct: 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62
Query: 145 ----KGEVYIRGRKRAGLISDE--EISGLRIGLVFQS--AALFDSLTVRENVGFLLYENS 196
GEV + GR GL E ++ G RI ++FQ +L +T+ + + L +
Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122
Query: 197 KMRDEQISELVKENLAAVGL--KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254
K + + E L VGL DR P +LSGGM++RV +A ++ P++
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALK-------PKL 175
Query: 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314
L+ DEPT LD + DL++ + ++ + + +TH + DR++
Sbjct: 176 LIADEPTTALDVTTQAQILDLLKDLQRELGMAV---------LFITHDLGVVAELADRVV 226
Query: 315 FLYEGKIVWQG 325
+Y+G+IV G
Sbjct: 227 VMYKGEIVETG 237
|
Length = 539 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 9e-38
Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 23/251 (9%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ N+ K + E L+ VS ++ G+ I+GP+G+GKS +L+ IAG + PD G++ +
Sbjct: 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G+ L ++ I V Q+ ALF +TV +N+ + L + + ++I V E
Sbjct: 60 GKDITNLPPEKR----DISYVPQNYALFPHMTVYKNIAYGLKKRKVDK-KEIERKVLEIA 114
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+G+ + +R P LSGG ++RVA+AR+++ V P++LL DEP + LD
Sbjct: 115 EMLGIDHLLNRKPETLSGGEQQRVAIARALV-------VNPKILLLDEPFSALDVRTKEK 167
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-F 330
+ + ++ + K+ + + VTH D++ + GK++ G E F
Sbjct: 168 LREELKKIRKEFG---------VTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
Query: 331 TSSSNPIVQQF 341
N V +F
Sbjct: 219 KKPKNEFVAEF 229
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-37
Identities = 82/244 (33%), Positives = 122/244 (50%), Gaps = 32/244 (13%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ N+ K +G+ +RGVSF++R GE G++GP+G GK+T +K++ LL P G +
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60
Query: 152 G---RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV---GFLLYENSKMRDEQISE 205
G + + RIG+VFQ ++ D LT EN+ L R E+I E
Sbjct: 61 GHDVVREPREVRR------RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDE 114
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
L L VGL DRL SGGM++R+ +ARS++ PEVL DEPT GLD
Sbjct: 115 L----LDFVGLLEAADRLVKTYSGGMRRRLEIARSLV-------HRPEVLFLDEPTIGLD 163
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
P V + I + K E G+ + ++ TH + DR+ + G+I+ +G
Sbjct: 164 PQTRAHVWEYIEKL--KEEFGM-------TILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
Query: 326 MTHE 329
E
Sbjct: 215 TPEE 218
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 7e-37
Identities = 78/231 (33%), Positives = 128/231 (55%), Gaps = 30/231 (12%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
EK L V+ +I GE VG+IG +G+GKST+++ + GLL P G++ I G I+D+
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVD----ITDK 74
Query: 163 EISGL----RIGLVFQ--SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 216
++ ++GLVFQ LF+ T+ +++ F N + +E+I VK + VGL
Sbjct: 75 KVKLSDIRKKVGLVFQYPEYQLFEE-TIEKDIAFGP-INLGLSEEEIENRVKRAMNIVGL 132
Query: 217 K--GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
+D+ P ELSGG K+RVA+A + ++EP++L+ DEPTAGLDP + +
Sbjct: 133 DYEDYKDKSPFELSGGQKRRVAIAGVV-------AMEPKILILDEPTAGLDPKGRDEILN 185
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
I+ +HK+ + ++V+H + + DR+I + +GK QG
Sbjct: 186 KIKELHKEYNM---------TIILVSHSMEDVAKLADRIIVMNKGKCELQG 227
|
Length = 287 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 1e-36
Identities = 82/254 (32%), Positives = 141/254 (55%), Gaps = 30/254 (11%)
Query: 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+++ R++ S+ + L+G++FK GE V ++GP+G GKST+ G+L P GEV
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 150 IRGRK----RAGLISDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQI 203
I+G + L+ + +G+VFQ+ LF + TV E+V F N + E++
Sbjct: 61 IKGEPIKYDKKSLLEVRK----TVGIVFQNPDDQLF-APTVEEDVAFGPL-NLGLSKEEV 114
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ VKE L AVG++G E++ P LSGG KKRVA+A I+ +++PE+++ DEPT+G
Sbjct: 115 EKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIA-GIL------AMKPEIIVLDEPTSG 167
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323
LDP+ ++ + L+ ++K+G + ++ TH + D++ + +GKI+
Sbjct: 168 LDPMGASQIMKLLYDLNKEG----------ITIIISTHDVDLVPVYADKVYVMSDGKIIK 217
Query: 324 QGMTHEFTSSSNPI 337
+G E S I
Sbjct: 218 EGTPKEVFSDIETI 231
|
Length = 275 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-36
Identities = 75/238 (31%), Positives = 122/238 (51%), Gaps = 26/238 (10%)
Query: 91 LIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+++ ++ KS+G K +R VSF+ GE G++G +G GK+T+L++IA LL PD G+V
Sbjct: 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELV 207
I G + D +IG++F L+ LT REN+ + L + ++I +
Sbjct: 61 IDG---VDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG---LSRKEIKARI 114
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E + L DR E S GMK++VA+AR+++ D P +L+ DEPT+GLD
Sbjct: 115 AELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD-------PSILVLDEPTSGLDIR 167
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
D I+ L N G + +H + DR+I L++G++V +G
Sbjct: 168 TRRKFHDFIKQ--------LKNEGRAV--IFSSHIMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 1e-36
Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 21/224 (9%)
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
+H+ + GE V I+GPSG GKST+L +IAG + P G + + + GL +
Sbjct: 11 EHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQR 70
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
+ ++FQ LF LTVR+N+G L+ K+ EQ E V + VG+ DRL
Sbjct: 71 ----PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQ-QEKVVDAAQQVGIADYLDRL 125
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
P +LSGG ++RVALAR ++ N +LL DEP + LDP+ + L++ + +
Sbjct: 126 PEQLSGGQRQRVALARCLVRPNP-------ILLLDEPFSALDPLLREEMLALVKQLCSER 178
Query: 284 ENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
+ L ++VTH S R ++ + +GKI
Sbjct: 179 QRTL---------LMVTHHLSDARAIASQIAVVSQGKIKVVSDC 213
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-36
Identities = 81/245 (33%), Positives = 132/245 (53%), Gaps = 27/245 (11%)
Query: 86 DDGDVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
+ V+I NV S+ E + L+ VSF+I GE V I+G +G+GKSTI KI+ GLL P
Sbjct: 2 KNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP 61
Query: 144 DKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRD 200
GE+ I G IS E + +R IG++FQ+ F TV +++ F L EN K+
Sbjct: 62 QSGEIKIDGIT----ISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL-ENKKVPP 116
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+++ +++ + VG++ D+ P LSGG K+RVA+A + + PE++++DE
Sbjct: 117 KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALN-------PEIIIFDES 169
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
T+ LDP ++ ++ + K + L + +TH A D++I EGK
Sbjct: 170 TSMLDPKGKREIKKIMVDLRKTRKKTL---------ISITHDMDEAILA-DKVIVFSEGK 219
Query: 321 IVWQG 325
++ QG
Sbjct: 220 LIAQG 224
|
Length = 271 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 2e-36
Identities = 74/241 (30%), Positives = 130/241 (53%), Gaps = 29/241 (12%)
Query: 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I + K F + + GVSF ++ GE G++GP+G GK+T L+++AGLL PD G
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQIS 204
+ G ++ + + R+G V S L+D LT REN+ + LY ++ ++++
Sbjct: 61 FATVDGFD---VVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELT 114
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
++E +G++ + DR S GM+++VA+AR+++ D P VLL DEPT GL
Sbjct: 115 ARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD-------PPVLLLDEPTTGL 167
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
D +A+ + + IR + G+ + TH + R DR++ L+ G++V++
Sbjct: 168 DVMATRALREFIRQLRALGK----------CILFSTHIMQEVERLCDRVVVLHRGRVVYE 217
Query: 325 G 325
G
Sbjct: 218 G 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 2e-36
Identities = 89/265 (33%), Positives = 146/265 (55%), Gaps = 30/265 (11%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG--- 152
+++K +GE +L+GVS + G+ + IIG SG+GKST L+ I L P +G + + G
Sbjct: 10 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI 69
Query: 153 ---RKRAGL--ISDEEISGL---RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
R + G ++D+ L R+ +VFQ L+ +TV ENV + + ++
Sbjct: 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR 129
Query: 205 ELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
E + LA VG+ + + P LSGG ++RV++AR++ ++EPEVLL+DEPT+
Sbjct: 130 ERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL-------AMEPEVLLFDEPTSA 182
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323
LDP +V +++R + + E G + VVVTH+ R +IFL++GKI
Sbjct: 183 LDP---ELVGEVLRIMQQLAEEG-------KTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232
Query: 324 QGMTHE-FTSSSNPIVQQFASGSLE 347
+G + F + +P +QQF GSL+
Sbjct: 233 EGAPEQLFGNPQSPRLQQFLKGSLK 257
|
Length = 257 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 129 bits (328), Expect = 2e-36
Identities = 76/233 (32%), Positives = 111/233 (47%), Gaps = 53/233 (22%)
Query: 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152
+ N+ +G + +L +S I GE VGI+GP+G GKST+LK +AGLL P GE+ + G
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 153 RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
+ A L S +E++ +I V Q+ L
Sbjct: 61 KDLASL-SPKELA-RKIAYVPQA-----------------------------------LE 83
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
+GL + DR +ELSGG ++RV LAR++ EP +LL DEPT+ LD +
Sbjct: 84 LLGLAHLADRPFNELSGGERQRVLLARALA-------QEPPILLLDEPTSHLDIAHQIEL 136
Query: 273 EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+L+R LA V+V H + R DR+I L +G+IV QG
Sbjct: 137 LELLRR--------LARERGKTV-VMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-36
Identities = 77/250 (30%), Positives = 123/250 (49%), Gaps = 22/250 (8%)
Query: 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158
K G K + I GE I+G SG+GKST ++++ L+ P G+++I G
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK- 59
Query: 159 ISDEEISGLR---IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
S E+ +R IG+VFQ ALF +T+ +N E +++ E E L VG
Sbjct: 60 QSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGP-ELLGWPEQERKEKALELLKLVG 118
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
L+ E R P ELSGGM++RV LAR++ + EP++LL DE + LDP+ ++D
Sbjct: 119 LEEYEHRYPDELSGGMQQRVGLARAL-------AAEPDILLMDEAFSALDPLIRDSMQDE 171
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSS 334
++ + + + V +TH R DR++ + G+IV G E + +
Sbjct: 172 LKKLQATLQK---------TIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPA 222
Query: 335 NPIVQQFASG 344
N V++F
Sbjct: 223 NEYVEEFIGK 232
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 6e-36
Identities = 78/237 (32%), Positives = 129/237 (54%), Gaps = 24/237 (10%)
Query: 92 IDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
I RN+ +G K +L ++ +I GE V + GPSG+GK+T+L +I GL + +G
Sbjct: 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ + G++ G S++E+ LR IG +FQ+ L LT R+NV L + ++ E
Sbjct: 62 LKVLGQELYGA-SEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE 120
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ L AVGL D P LSGG K+RVA+AR+++ P+++L DEPTA LD
Sbjct: 121 RARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV-------HRPKLVLADEPTAALD 173
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
+ V +L++ + + E G + ++VTH + I DR++ + +GK++
Sbjct: 174 SKSGRDVVELMQKLAR--EQG-------CTILIVTHDNR-ILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-35
Identities = 66/172 (38%), Positives = 97/172 (56%), Gaps = 17/172 (9%)
Query: 96 NVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153
++ S+ K L VS I GE V ++GPSG GK+T+L +IAG + P +G + + GR
Sbjct: 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 154 KRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA 213
+ G G G+VFQ+ AL L V +NV F L + + Q E+ + LA
Sbjct: 68 RIEG-------PGAERGVVFQNEALLPWLNVIDNVAFGL-QLRGIEKAQRREIAHQMLAL 119
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
VGL+G E + +LSGGM++RV +AR++ +VEP++LL DEP LD
Sbjct: 120 VGLEGAEHKYIWQLSGGMRQRVGIARAL-------AVEPQLLLLDEPFGALD 164
|
Length = 259 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-35
Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 25/249 (10%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
L++ R + KSFG L GVS +R GE ++G +G GKST++KI++G+ P
Sbjct: 1 MTMSTPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP 60
Query: 144 DKGEVYIRGRKRAGL-ISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK----M 198
D GE+ I G+ A D +G I V Q +L +L+V EN+ FL E ++ +
Sbjct: 61 DSGEILIDGKPVAFSSPRDALAAG--IATVHQELSLVPNLSVAENI-FLGREPTRRFGLI 117
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+ + +E LA +GL D L +LS ++ V +AR++ FD VL+ D
Sbjct: 118 DRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFD-------ARVLILD 170
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
EPTA L + + DLIR + +G + + ++H+ + DR+ L +
Sbjct: 171 EPTAALTVKETERLFDLIRRLKAQG----------VAIIYISHRLDEVFEIADRITVLRD 220
Query: 319 GKIVWQGMT 327
G++V T
Sbjct: 221 GRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-35
Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 28/232 (12%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
NV K FG L +SF + GE G++GP+G GK+T +++I G++ PD GEV G+
Sbjct: 5 NVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPL 64
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAA 213
+ RIG + + L+ + V + L+Y ++ E+ + E L
Sbjct: 65 DIAARN------RIGYLPEERGLYPKMKVIDQ---LVYLAQLKGLKKEEARRRIDEWLER 115
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
+ L ++ ELS G +++V ++I D PE+L+ DEP +GLDP+ +++
Sbjct: 116 LELSEYANKRVEELSKGNQQKVQFIAAVIHD-------PELLILDEPFSGLDPVNVELLK 168
Query: 274 DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
D+IR + + G+ + ++ THQ + DR++ L +G+ V G
Sbjct: 169 DVIRELARAGK----------TVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 2e-35
Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 45/241 (18%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
G+K +L+ +SF I GE V I+GPSG+GKST++K++ L P GE+ I G I D
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGI----DIRD 395
Query: 162 EEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV 219
+ LR IG+V Q LF T+REN+ + + DE+I E +K
Sbjct: 396 ISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDAT---DEEIEEALK----LANAHEF 447
Query: 220 EDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
LP LSGG ++R+A+AR+++ + P +L+ DE T+ LD
Sbjct: 448 IANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN-------PPILILDEATSALDTET 500
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
+++D ++ + K + +++ H+ STI+ A DR+I L G+IV +G TH
Sbjct: 501 EALIQDALKKLLKG-----------RTTLIIAHRLSTIKNA-DRIIVLDNGRIVERG-TH 547
Query: 329 E 329
E
Sbjct: 548 E 548
|
Length = 567 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-35
Identities = 71/257 (27%), Positives = 128/257 (49%), Gaps = 39/257 (15%)
Query: 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153
N+ KS+ ++ ++ VS ++ GE VG++GP+G GK+T +I GL+ PD G++ +
Sbjct: 7 AENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLD-- 64
Query: 154 KRAGLISDEEISGL------RIGLVF--QSAALFDSLTVRENVGFLL--YENSKMRDEQI 203
DE+I+ L R+G+ + Q A++F LTV +N+ +L E + E+
Sbjct: 65 -------DEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAER- 116
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
E + L + + D LSGG ++RV +AR++ P+ +L DEP AG
Sbjct: 117 KEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA-------ANPKFILLDEPFAG 169
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323
+DPIA ++ +I+ + +G L N+ + + DR + +GK++
Sbjct: 170 VDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDIC----------DRAYIISDGKVLA 219
Query: 324 QGMTHEFTSSSNPIVQQ 340
+G E +N V++
Sbjct: 220 EGSPEEI--VNNEDVRR 234
|
Length = 243 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (323), Expect = 3e-35
Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 32/244 (13%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+++ N+ +G+ LRGVS ++ GE V ++G +G GK+T+LK I GL+ P G +
Sbjct: 1 APMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVREN--VGFLLYENSKMRD---EQI 203
G GL E + L I V + +F LTV EN +G + + ++ E++
Sbjct: 61 IFDGEDITGLPP-HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV 119
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
EL LK ++ LSGG ++ +A+AR+++ P++LL DEP+ G
Sbjct: 120 YELFPR------LKERRNQRAGTLSGGEQQMLAIARALM-------SRPKLLLLDEPSEG 166
Query: 264 LDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAV-DRLIFLYEGKI 321
L P +VE++ ++ + + E G+ +++ Q++ + DR L G+I
Sbjct: 167 LAPK---IVEEIFEAIKELRKEGGMT--------ILLVEQNARFALEIADRGYVLENGRI 215
Query: 322 VWQG 325
V G
Sbjct: 216 VLSG 219
|
Length = 237 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-35
Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 19/188 (10%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK----RAG 157
G +L+G++F GE + ++G +G GKST+L + GLL P G V I G R G
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 158 LISDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
L+ + R+GLVFQ LF + V ++V F N + + ++ V+E L AVG
Sbjct: 63 LLERRQ----RVGLVFQDPDDQLF-AADVDQDVAFGPL-NLGLSEAEVERRVREALTAVG 116
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
G+ +R LSGG KKRVA+A ++ ++ P+VLL DEPTAGLDP + +
Sbjct: 117 ASGLRERPTHCLSGGEKKRVAIAGAV-------AMRPDVLLLDEPTAGLDPAGREQMLAI 169
Query: 276 IRSVHKKG 283
+R + +G
Sbjct: 170 LRRLRAEG 177
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 4e-35
Identities = 74/231 (32%), Positives = 108/231 (46%), Gaps = 31/231 (13%)
Query: 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-RAGLISDEEISGLRI 169
+ GE V I+GPSG GKST+L +IAG L P G + + G+ S +S L
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML-- 76
Query: 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG 229
FQ LF LTV +N+G L K+ Q E + +G++ + RLP +LSG
Sbjct: 77 ---FQENNLFSHLTVAQNIGLGLNPGLKLNAAQ-REKLHAIARQMGIEDLLARLPGQLSG 132
Query: 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS----TVVEDLIRSVHKKGEN 285
G ++RVALAR ++ E +LL DEP + LDP T+V + + E
Sbjct: 133 GQRQRVALARCLV-------REQPILLLDEPFSALDPALRQEMLTLVSQVCQ------ER 179
Query: 286 GLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNP 336
L + ++V+H R R + + +G+I W G T E S
Sbjct: 180 QL-------TLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKAS 223
|
Length = 232 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 5e-35
Identities = 83/246 (33%), Positives = 131/246 (53%), Gaps = 29/246 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +V K FG +L G++F + GE V +IGPSG+GKSTIL+I+ L D+G++ +
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 152 G------RKRAGLISDEEISGLR-----IGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
G R G + + LR IG+VFQS LF TV +NV M
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ + E L VGL D +P++LSGG ++RVA+AR++ ++ P+V+L+DE
Sbjct: 121 AEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARAL-------AMRPKVMLFDEV 173
Query: 261 TAGLDPIASTVVEDLIRSVHKKG-ENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319
T+ LDP +V +++ + + E+ L + ++VTH+ R DR+ F +G
Sbjct: 174 TSALDP---ELVGEVLNVIRRLASEHDL-------TMLLVTHEMGFAREFADRVCFFDKG 223
Query: 320 KIVWQG 325
+IV QG
Sbjct: 224 RIVEQG 229
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 6e-35
Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 23/233 (9%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ N+ KSFG +L +S I G+ V ++GPSG+GK+T+L+IIAGL G +
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF---LLYENSKMRDEQISELVK 208
G + L + + ++G VFQ ALF +TV +N+ F +L + I V
Sbjct: 63 GTDVSRLHARDR----KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVT 118
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
+ L V L + DR P++LSGG K+RVALAR++ +VEP++LL DEP LD
Sbjct: 119 QLLEMVQLAHLADRYPAQLSGGQKQRVALARAL-------AVEPQILLLDEPFGALDAQV 171
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
+ +R +H++ + + V VTH DR++ + +G I
Sbjct: 172 RKELRRWLRQLHEELK---------FTSVFVTHDQEEAMEVADRVVVMSQGNI 215
|
Length = 353 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 7e-35
Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 27/234 (11%)
Query: 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158
K +G+ + GV+FK+R GE G +GP+G GK+T ++++ LL P G + G +
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD---V 57
Query: 159 ISDEEISGLRIGLVFQSAALFDSLTVRENV---GFLLYENSKMRDEQISELVKENLAAVG 215
+ + IG+V Q A++ + LT REN+ G L +E+ EL++
Sbjct: 58 VREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE----LFE 113
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
L DR SGGM++R+ +A S+I +P+VL DEPT GLDP + D
Sbjct: 114 LGEAADRPVGTYSGGMRRRLDIAASLI-------HQPDVLFLDEPTTGLDPRTRRAIWDY 166
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
IR++ ++G L + TH + DR+ + G+I+ +G E
Sbjct: 167 IRALKEEGVTIL----------LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEE 210
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 1e-34
Identities = 85/266 (31%), Positives = 137/266 (51%), Gaps = 25/266 (9%)
Query: 65 PATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIG 124
+ SE ++ P V ID V KS+G+K ++ G+SF + GE G++G
Sbjct: 17 SPIERKHQGISEAKASI--PGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLG 74
Query: 125 PSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV 184
P+G GKSTI ++I G+ +PD G++ + G + + ++ RIG+V Q L TV
Sbjct: 75 PNGAGKSTIARMILGMTSPDAGKITVLG---VPVPARARLARARIGVVPQFDNLDLEFTV 131
Query: 185 RENVGFLLYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243
REN+ L++ M +I ++ L L+ D S+LSGGMK+R+ LAR++I
Sbjct: 132 RENL--LVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN 189
Query: 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303
D P++L+ DEPT GLDP A ++ + +RS+ +G+ + ++ TH
Sbjct: 190 D-------PQLLILDEPTTGLDPHARHLIWERLRSLLARGK----------TILLTTHFM 232
Query: 304 STIRRAVDRLIFLYEGKIVWQGMTHE 329
R DRL L G+ + +G H
Sbjct: 233 EEAERLCDRLCVLEAGRKIAEGRPHA 258
|
Length = 340 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-34
Identities = 73/252 (28%), Positives = 126/252 (50%), Gaps = 46/252 (18%)
Query: 92 IDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ NV S+ EK +L+ ++F I+ GE V I+GP+G GK+T++ ++ P KG++ I
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G I D LR IG+V Q LF S T+ EN + DE++ E K
Sbjct: 63 DGID----IRDISRKSLRSMIGVVLQDTFLF-SGTIMEN---IRLGRPNATDEEVIEAAK 114
Query: 209 ENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
E G +LP LS G ++ +A+AR+++ D P++L+
Sbjct: 115 E----AGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD-------PKILIL 163
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317
DE T+ +D ++++ + + K + +++ H+ STI+ A D+++ L
Sbjct: 164 DEATSNIDTETEKLIQEALEKLMKG-----------RTSIIIAHRLSTIKNA-DKILVLD 211
Query: 318 EGKIVWQGMTHE 329
+GKI+ +G TH+
Sbjct: 212 DGKIIEEG-THD 222
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 5e-34
Identities = 91/261 (34%), Positives = 138/261 (52%), Gaps = 32/261 (12%)
Query: 92 IDCRNV-YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ + V Y SFG K IL+ +S K G I+GPSG GKST++K+I L+ P +G + I
Sbjct: 4 IEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G I ++ LR IG+VFQ LF+ TV++N+ E M + + V+
Sbjct: 63 DGVD----IKTIDVIDLRRKIGMVFQQPHLFEG-TVKDNI-----EYGPMLKGEKNVDVE 112
Query: 209 ENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
L+ VGL K R LSGG +RV++AR++ + PEVLL DEPT+ LDP
Sbjct: 113 YYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL-------ANNPEVLLLDEPTSALDPT 165
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
++ ++E+LI L N N+ + + +TH +R D FL +G +V T
Sbjct: 166 STEIIEELIVK--------LKNKMNL-TVIWITHNMEQAKRIGDYTAFLNKGILVEYAKT 216
Query: 328 HE-FTSSSNPIVQQFASGSLE 347
++ FT+ N + + F G L+
Sbjct: 217 YDFFTNPQNEVTKLFIQGKLK 237
|
Length = 241 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 7e-34
Identities = 86/275 (31%), Positives = 134/275 (48%), Gaps = 46/275 (16%)
Query: 69 FNDSSKSENVNTLF-EPEDDGDVLIDCRNV--YKSFGEKHILRGVSFKIRHGEAVGIIGP 125
+ + E TL P+ G+ I+ NV + +L +S +I GE V I+G
Sbjct: 450 LDTPPEQEGDKTLIHLPKLQGE--IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGR 507
Query: 126 SGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLT 183
SG+GKST+LK++ GL P +G + + G + +++ LR +G V Q LF +
Sbjct: 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI----DLASLRRQVGYVLQDPFLFSG-S 562
Query: 184 VRENVGFLLYENSKMRDEQISELVKENLAAV-----GLKGVEDRLPSE----LSGGMKKR 234
+REN + N + DE+I E + LA L D E LSGG ++R
Sbjct: 563 IREN---IALGNPEATDEEIIEAAQ--LAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617
Query: 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294
+ALAR+++ P++LL DE T+ LDP ++ + +G
Sbjct: 618 LALARALLSK-------PKILLLDEATSALDPETEAIILQNLLQ-ILQGRT--------- 660
Query: 295 SYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+++ H+ STIR A DR+I L +GKIV QG +HE
Sbjct: 661 -VIIIAHRLSTIRSA-DRIIVLDQGKIVEQG-SHE 692
|
Length = 709 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-33
Identities = 82/270 (30%), Positives = 143/270 (52%), Gaps = 37/270 (13%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKG 146
I+ N+ +G H+++GV KI ++GPSG GKST+L+ LL A +G
Sbjct: 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG 64
Query: 147 EVYIRGRKRAGLISDEEISGL----RIGLVFQSAALFDSLTVRENVGFLLYENSKMRD-E 201
EV + GR I ++ + +G+VFQ F LT+ +NV + N ++ +
Sbjct: 65 EVRLFGRN----IYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKK 120
Query: 202 QISELVKENLAAVGL-KGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
++ E V+ L L V+DRL PS LSGG ++R+ +AR++ +++P++LL
Sbjct: 121 ELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL-------AMKPKILLM 173
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317
DEPTA +DP+ + +E+L+ + K+ + V+VTH + R D + FLY
Sbjct: 174 DEPTANIDPVGTAKIEELLFELKKE-----------YTIVLVTHSPAQAARVSDYVAFLY 222
Query: 318 EGKIVWQGMTHE-FTSSSNPIVQQFASGSL 346
GK++ G T + F + + + +++ +G+L
Sbjct: 223 LGKLIEVGPTRKVFENPEHELTEKYVTGAL 252
|
Length = 253 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-33
Identities = 68/237 (28%), Positives = 120/237 (50%), Gaps = 32/237 (13%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+N+ K FG++ + +S + G++GP+G GKST+LK+I G+L P GE+ G
Sbjct: 4 KNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP 63
Query: 155 --RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
R L IG + +S L+++LT REN+ + + D +I E+ L
Sbjct: 64 WTRKDLHK--------IGSLIESPPLYENLTARENLK-VHTTLLGLPDSRIDEV----LN 110
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
V L + + S GMK+R+ +A +++ P++L+ DEPT GLDPI +
Sbjct: 111 IVDLTNTGKKKAKQFSLGMKQRLGIAIALL-------NHPKLLILDEPTNGLDPIGIQEL 163
Query: 273 EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+LIRS ++G + ++ +H S +++ D + + EG + +QG ++
Sbjct: 164 RELIRSFPEQG----------ITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 129 bits (328), Expect = 3e-33
Identities = 86/254 (33%), Positives = 117/254 (46%), Gaps = 56/254 (22%)
Query: 92 IDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
I+ RNV SF E L VS IR GE V IIG G+GKST+LK++ GL P +G
Sbjct: 464 IEFRNV--SFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS 521
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
V + G I ++ IG V Q LF T+R+N + DE+I
Sbjct: 522 VLLDGVD-IRQIDPADLRR-NIGYVPQDPRLF-YGTLRDN---IALGAPYADDEEI---- 571
Query: 208 KENLAAVGLKGVED---RLPS-----------ELSGGMKKRVALARSIIFDNTKESVEPE 253
L A L GV + R P LSGG ++ VALAR+++ D P
Sbjct: 572 ---LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD-------PP 621
Query: 254 VLLYDEPTAGLDPIAS--TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311
+LL DEPT+ +D S + L R + K + V+VTH+ S + VD
Sbjct: 622 ILLLDEPTSAMD-NRSEERFKDRLKRWLAGK------------TLVLVTHRTSLLDL-VD 667
Query: 312 RLIFLYEGKIVWQG 325
R+I + G+IV G
Sbjct: 668 RIIVMDNGRIVADG 681
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 3e-33
Identities = 82/248 (33%), Positives = 124/248 (50%), Gaps = 33/248 (13%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
ID RNV K +G+K ++ G+SF ++ GE G++GP+G GK+T L+++ GL PD G + +
Sbjct: 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67
Query: 152 GRKRAGLISDEEISG------LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
G E + R+G+V Q L TVREN+ + +
Sbjct: 68 G---------EPVPSRARHARQRVGVVPQFDNLDPDFTVRENL-LVFGRYFGLSAAAARA 117
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
LV L L+ D ELSGGMK+R+ LAR+++ D P+VL+ DEPT GLD
Sbjct: 118 LVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVND-------PDVLVLDEPTTGLD 170
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
P A ++ + +RS+ +G+ L + TH R DRL + EG+ + +G
Sbjct: 171 PQARHLMWERLRSLLARGKTIL----------LTTHFMEEAERLCDRLCVIEEGRKIAEG 220
Query: 326 MTHEFTSS 333
H S
Sbjct: 221 APHALIES 228
|
Length = 306 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 4e-33
Identities = 80/242 (33%), Positives = 122/242 (50%), Gaps = 25/242 (10%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+++ RN+ G + +L VS +R GE V I+GP+G GKST+L+ ++G L+PD GEV
Sbjct: 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
+ GR A S E++ R ++ Q ++L TV E V + R E LV
Sbjct: 61 LNGRPLADW-SPAELARRR-AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAED-DALVAA 117
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
LA V L + R +LSGG ++RV LAR ++ + P LL DEPT+ LD
Sbjct: 118 ALAQVDLAHLAGRDYPQLSGGEQQRVQLAR-VLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTH------QHSTIRRAVDRLIFLYEGKIVW 323
V L R LA+ +A +VV H +++ DR++ L++G++V
Sbjct: 177 HHVLRLARQ--------LAHERGLA-VIVVLHDLNLAARYA------DRIVLLHQGRLVA 221
Query: 324 QG 325
G
Sbjct: 222 DG 223
|
Length = 258 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 5e-33
Identities = 89/268 (33%), Positives = 142/268 (52%), Gaps = 35/268 (13%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KG 146
I+ R++ SFG+ +L GV+ +I ++GPSG+GKST+L++ L L P+ G
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG 63
Query: 147 EVYIRGRKRAGLISDEEISGL--RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE-QI 203
EVY+ G+ I ++ L R+ +VFQ +L++ ENV L N ++ + ++
Sbjct: 64 EVYLDGQD----IFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKEL 119
Query: 204 SELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
E V+ L L V+DRL + +LSGG ++R+ +AR++ F PEVLL DE
Sbjct: 120 QERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQ-------PEVLLADE 172
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319
PTA LDP + +E L + K + V+VTH R D + FLY+G
Sbjct: 173 PTANLDPENTAKIESLFLELKKD-----------MTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 320 KIVWQGMTHE-FTSSSNPIVQQFASGSL 346
+IV G T E FT+ + + +++ +G L
Sbjct: 222 QIVEWGPTREVFTNPRHELTEKYVTGRL 249
|
Length = 250 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 7e-33
Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 68/252 (26%)
Query: 95 RNVYKSFGEKHILR---------GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK 145
+N+ K F GVSF I+ GE +G++G SG GKST+ ++I GL P
Sbjct: 8 KNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS 67
Query: 146 GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
GE+ G+ + +K+ E+ E
Sbjct: 68 GEILFEGK----------------------------------------DITKLSKEERRE 87
Query: 206 LVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
V E L VGL R P ELSGG ++R+ +AR++ + P++++ DEP + L
Sbjct: 88 RVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA-------LNPKLIVADEPVSAL 140
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
D + +L++ + + E GL +Y+ ++H S +R DR+ +Y GKIV
Sbjct: 141 DVSVQAQILNLLKDLQE--ELGL-------TYLFISHDLSVVRYISDRIAVMYLGKIVEI 191
Query: 325 GMTHEFTSSSNP 336
G T E SNP
Sbjct: 192 GPTEEV--FSNP 201
|
Length = 268 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 7e-33
Identities = 72/215 (33%), Positives = 114/215 (53%), Gaps = 26/215 (12%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L+GV+ I+ GE + +IG SG GKST+L +I+GL P G V + G++ D +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMV-- 58
Query: 167 LRIGLVFQSAALFDSLTVRENVGFLLYE-NSKMRDEQISELVKENLAAVGLKGVEDRLPS 225
VFQ+ +L LTVREN+ + + + +V+E++A VGL D+ P
Sbjct: 59 -----VFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG 113
Query: 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA-STVVEDLIRSVHKKGE 284
+LSGGMK+RVA+AR++ S+ P+VLL DEP LD + + E+L++ E
Sbjct: 114 QLSGGMKQRVAIARAL-------SIRPKVLLLDEPFGALDALTRGNLQEELMQIWE---E 163
Query: 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319
+ + + ++VTH DR++ L G
Sbjct: 164 HRV-------TVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 8e-33
Identities = 76/260 (29%), Positives = 117/260 (45%), Gaps = 62/260 (23%)
Query: 92 IDCRNVYKSF----------------------GEKHILRGVSFKIRHGEAVGIIGPSGTG 129
I+ NV KS+ GE L+ VSF++ GE +G+IG +G G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 130 KSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVG 189
KST+L+++AG+ PD G V +RGR +S L +GL LT REN+
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRGR----------VSSL-LGL---GGGFNPELTGRENIY 106
Query: 190 F--LLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247
L + ++I E + E + L D S GMK R+A A + +
Sbjct: 107 LNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALE--- 160
Query: 248 ESVEPEVLLYDEPTAGLDPIASTV--VEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305
P++LL DE A D A+ + +R + K+G + ++V+H S+
Sbjct: 161 ----PDILLIDEVLAVGD--AAFQEKCQRRLRELLKQG----------KTVILVSHDPSS 204
Query: 306 IRRAVDRLIFLYEGKIVWQG 325
I+R DR + L +GKI + G
Sbjct: 205 IKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 8e-33
Identities = 64/175 (36%), Positives = 105/175 (60%), Gaps = 13/175 (7%)
Query: 92 IDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+ + V KS+ K +++G+ + GE + ++GPSG GKST+L+++AGL GE++I
Sbjct: 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI 63
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
GR ++++ E + I +VFQ+ AL+ ++VREN+ + L + M +I E V E
Sbjct: 64 GGR----VVNELEPADRDIAMVFQNYALYPHMSVRENMAYGL-KIRGMPKAEIEERVAEA 118
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ L+ + DR P ELSGG ++RVA+ R+I+ EP V L+DEP + LD
Sbjct: 119 ARILELEPLLDRKPRELSGGQRQRVAMGRAIV-------REPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 125 bits (314), Expect = 8e-33
Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 32/249 (12%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
G + ID V ++G +L +S +I GE + +IG SG GK+T+L+ IAG +
Sbjct: 4 GGIRIDHLRV--AYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA--- 58
Query: 148 VYIRGRKRAGLISDEEISGL-----RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
G I+D +++ + L+FQ+ ALF L V +NV F L KM
Sbjct: 59 ----GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGL-RAQKMPKAD 113
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
I+E V + L VGL LP++LSGGM++R+A+AR+I +EP+VLL DEP +
Sbjct: 114 IAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA-------IEPDVLLLDEPLS 166
Query: 263 GLDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
LD I + + E++ +H++ + + VTH D+ + +G++
Sbjct: 167 ALDANIRANMREEIAA-LHEELPE--------LTILCVTHDQDDALTLADKAGIMKDGRL 217
Query: 322 VWQGMTHEF 330
G
Sbjct: 218 AAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 9e-33
Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 23/241 (9%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+V ID V KS+G+K ++ +SF I GE G++GP+G GKSTI +++ G+++PD+G++
Sbjct: 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS-KMRDEQISELV 207
+ G ++ + IG+V Q L TVREN+ L++ M +I ++
Sbjct: 62 TVLGEPVPSRA---RLARVAIGVVPQFDNLDPEFTVRENL--LVFGRYFGMSTREIEAVI 116
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
L L+ D + LSGGMK+R+ LAR++I D P++L+ DEPT GLDP
Sbjct: 117 PSLLEFARLESKADVRVALLSGGMKRRLTLARALIND-------PQLLILDEPTTGLDPH 169
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
A ++ + +RS+ +G+ + ++ TH R DRL L G+ + +G
Sbjct: 170 ARHLIWERLRSLLARGK----------TILLTTHFMEEAERLCDRLCVLESGRKIAEGRP 219
Query: 328 H 328
H
Sbjct: 220 H 220
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-32
Identities = 85/245 (34%), Positives = 130/245 (53%), Gaps = 29/245 (11%)
Query: 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
LI+ R++ S+ G K L ++F + +IGP+G GKST+ + G+L P G V
Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISE 205
IRG I+ E I +R +GLVFQ+ +F S TV +++ F N + +E ++
Sbjct: 63 IRGEP----ITKENIREVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPI-NLGLDEETVAH 116
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V L +GL+ + DR+P LSGG KKRVA+A I ++EP+VL+ DEPTAGLD
Sbjct: 117 RVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI-------AMEPQVLVLDEPTAGLD 169
Query: 266 PIASTVVEDLIRSVHKKGEN-GLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
P V++LI ++ E G+ + + THQ + D + + +G+IV
Sbjct: 170 PQG---VKELIDFLNDLPETYGM-------TVIFSTHQLDLVPEMADYIYVMDKGRIVAY 219
Query: 325 GMTHE 329
G E
Sbjct: 220 GTVEE 224
|
Length = 277 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-32
Identities = 78/259 (30%), Positives = 118/259 (45%), Gaps = 38/259 (14%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
P + + LI+ +NV K IL +S+++ GE I+GP+G GK+T+L ++ G
Sbjct: 23 HPIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP 82
Query: 143 PDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENV------------ 188
P G+V + GR+ E I LR IGLV S+ L + VRE V
Sbjct: 83 PSSGDVTLLGRRFG---KGETIFELRKRIGLV--SSELHERFRVRETVRDVVLSGFFASI 137
Query: 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248
G + + L++ +G K + DR LS G ++RV +AR+++ D
Sbjct: 138 GIYQEDLTAEDLAAAQWLLEL----LGAKHLADRPFGSLSQGEQRRVLIARALVKD---- 189
Query: 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308
PE+L+ DEP GLD IA E L+ + LA + + VTH I
Sbjct: 190 ---PELLILDEPAQGLDLIA---REQLLNRL-----EELAASPGAPALLFVTHHAEEIPP 238
Query: 309 AVDRLIFLYEGKIVWQGMT 327
+ L EG++V QG
Sbjct: 239 CFTHRLLLKEGEVVAQGKL 257
|
Length = 257 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 66/171 (38%), Positives = 103/171 (60%), Gaps = 12/171 (7%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
RNV K++G+ I + ++ I GE V +GPSG GKST+L++IAGL G+++I G K
Sbjct: 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI-GEK 65
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
R ++D + +G+VFQS AL+ L+V EN+ F L + + + E+I++ V + +
Sbjct: 66 R---MNDVPPAERGVGMVFQSYALYPHLSVAENMSFGL-KLAGAKKEEINQRVNQVAEVL 121
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
L + DR P LSGG ++RVA+ R+++ EP V L DEP + LD
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLV-------AEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 5e-32
Identities = 80/262 (30%), Positives = 145/262 (55%), Gaps = 40/262 (15%)
Query: 91 LIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
+I+ +N+ YK EK+ L VSF ++ GE + IIG +G+GKST +++I GLL + G+
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQIS 204
+ I G L+++E + +R IG+VFQ+ F TV ++V F L EN + E++
Sbjct: 64 IIIDGD----LLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL-ENKGIPHEEMK 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
E V E L VG++ ++R P+ LSGG K+RVA+A ++ ++ P++++ DE T+ L
Sbjct: 119 ERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV-------AMRPKIIILDEATSML 171
Query: 265 DPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323
DP +LI+++ + + + + + +TH + + DR++ + G++
Sbjct: 172 DPEGRL---ELIKTIKGIRDDYQM-------TVISITHDLDEVALS-DRVLVMKNGQV-- 218
Query: 324 QGMTHEFTSSSNPIVQQFASGS 345
S+S P + F+ G+
Sbjct: 219 -------ESTSTP-RELFSRGN 232
|
Length = 279 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 7e-32
Identities = 81/265 (30%), Positives = 127/265 (47%), Gaps = 52/265 (19%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI------------IAGLLAPDKGEV 148
+GE L+ ++ I + +IGPSG GKST+L+ I G L D ++
Sbjct: 13 YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72
Query: 149 YIRGRKRAGLISDEEISGLRI--GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
Y + +++ LRI G+VFQ F +++ ENV + L + + E+
Sbjct: 73 Y----------GNIDVADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEV 121
Query: 207 VKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
V+ +L L V+DRL S LSGG ++R+ +AR+I ++EP+V+L DEPT+
Sbjct: 122 VERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI-------AMEPDVILMDEPTS 174
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
LDPIA+ +E+L+ + K + V+VTH RR DR F G++V
Sbjct: 175 ALDPIATHKIEELMEELKKN-----------YTIVIVTHSMQQARRISDRTAFFLMGELV 223
Query: 323 WQGMTHEFTSSSNPI---VQQFASG 344
T SNP Q + +G
Sbjct: 224 EHDDTQVIF--SNPKDDRTQGYVNG 246
|
Length = 249 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 7e-32
Identities = 75/226 (33%), Positives = 106/226 (46%), Gaps = 24/226 (10%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
N+ GE+ + +SF + GEA+ I GP+G GK+T+L+I+AGLL PD GEVY +G
Sbjct: 6 ENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEP 65
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
+ + L +G + LT EN+ F + I E LA V
Sbjct: 66 IQNVRESYHQALLYLG---HQPGIKTELTALENLHFWQRFHGSGNAATIWEA----LAQV 118
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL G+ED +LS G ++RVALAR + S P +L DEP LD ++
Sbjct: 119 GLAGLEDLPVGQLSAGQQRRVALARLWL------SPAPLWIL-DEPFTALDKEGVALLTA 171
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
L+ + H A G I ++ THQ I A R + L K
Sbjct: 172 LMAA-H-------AAQGGIV--LLTTHQPLPIASAQIRRLDLTATK 207
|
Length = 209 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-31
Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 36/230 (15%)
Query: 98 YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157
+ E L+ +SF+I GE VGIIG +G GKST+LK+IAG+ P G+V + G+
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL 93
Query: 158 LISDEEISGLRIGLVFQSAALFDSLTVRENVGF--LLYENSKMRDEQISELVKENLAAVG 215
+ +G F LT REN+ L+ + ++I E V E +
Sbjct: 94 IE---------LGAGFDP-----ELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAE 136
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
L D+ S GM R+A + + VEP++LL DE A D +
Sbjct: 137 LGDFIDQPVKTYSSGMYARLAFSVAT-------HVEPDILLLDEVLAVGDAAFQEKCLER 189
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ + +K + + V+V+H I++ DR I+L G+I +G
Sbjct: 190 LNELVEKNK----------TIVLVSHDLGAIKQYCDRAIWLEHGQIRMEG 229
|
Length = 249 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-31
Identities = 66/231 (28%), Positives = 120/231 (51%), Gaps = 24/231 (10%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
V KSFG+K + +SF++ GE G++GP+G GK+T ++I GLL P +GE+ G
Sbjct: 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGP 65
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
+ I + RIG + + L+ +TV + + +L E M +I + ++ L +
Sbjct: 66 LSQEIKN------RIGYLPEERGLYPKMTVEDQLKYLA-ELKGMPKAEIQKKLQAWLERL 118
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
+ G + + ELS G ++++ ++I EPE+L+ DEP +GLDP+ +++D
Sbjct: 119 EIVGKKTKKIKELSKGNQQKIQFISAVIH-------EPELLILDEPFSGLDPVNVELLKD 171
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
I + ++G A+ + +H+ + DRL+ L +G+ V G
Sbjct: 172 AIFELKEEG----------ATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-31
Identities = 73/229 (31%), Positives = 104/229 (45%), Gaps = 55/229 (24%)
Query: 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAG 157
S K +L+ VS K + GE I+GPSG GKST+L +AG GEV I GR
Sbjct: 18 SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL-- 75
Query: 158 LISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217
D+ IG V Q L +LTVRE + F A L+
Sbjct: 76 ---DKRSFRKIIGYVPQDDILHPTLTVRETLMF----------------------AAKLR 110
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
G LSGG +KRV++A ++ P +L DEPT+GLD ++ V L+R
Sbjct: 111 G--------LSGGERKRVSIALELV-------SNPSLLFLDEPTSGLDSSSALQVMSLLR 155
Query: 278 SVHKKGENGLANPGNIASYVVVTHQHST-IRRAVDRLIFLYEGKIVWQG 325
LA+ G + + HQ S+ I D+L+ L +G++++ G
Sbjct: 156 --------RLADTGR--TIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-31
Identities = 81/254 (31%), Positives = 125/254 (49%), Gaps = 50/254 (19%)
Query: 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I+ NV ++ + +L+ VSF I G+ V I+GPSG+GKSTIL+++ G + I
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G+ I + + LR IG+V Q LF+ T+ N+ Y DE++ E K
Sbjct: 61 DGQD----IREVTLDSLRRAIGVVPQDTVLFND-TIGYNIR---YGRPDATDEEVIEAAK 112
Query: 209 --------ENL-----AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255
VG +G+ +LSGG K+RVA+AR+I+ + P +L
Sbjct: 113 AAQIHDKIMRFPDGYDTIVGERGL------KLSGGEKQRVAIARAILKN-------PPIL 159
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
L DE T+ LD ++ +R V K + +V+ H+ STI A D++I
Sbjct: 160 LLDEATSALDTHTEREIQAALRDVSKG-----------RTTIVIAHRLSTIVNA-DKIIV 207
Query: 316 LYEGKIVWQGMTHE 329
L +G+IV +G THE
Sbjct: 208 LKDGRIVERG-THE 220
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-31
Identities = 79/259 (30%), Positives = 141/259 (54%), Gaps = 27/259 (10%)
Query: 97 VYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156
+Y +K IL+ ++ KI + GI+GPSG+GKST+LK++ L+ ++ + G+
Sbjct: 16 LYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLY 75
Query: 157 GLISDEEISGLR----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
+I ++ +G+VFQ F L++ +N+ + L + +I ++V+E L
Sbjct: 76 FGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLR 135
Query: 213 AVGL-KGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
VGL K V DRL S+LSGG ++R+ +AR++ +++P+VLL DEPT+ +D +
Sbjct: 136 KVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL-------ALKPKVLLMDEPTSMIDIVN 188
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
S +E LI + + + V+V+H + R D + FLY G++V G ++
Sbjct: 189 SQAIEKLITELKNE-----------IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237
Query: 329 E-FTSSSNPIVQQFASGSL 346
E FTS N + +++ G +
Sbjct: 238 EIFTSPKNELTEKYVIGRI 256
|
Length = 257 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-31
Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 33/228 (14%)
Query: 100 SFGEKH---ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156
SF K IL +S + GE + + G +G GK+T+ KI+AGL+ G + + G+
Sbjct: 6 SFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK 65
Query: 157 GLISDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
+ E IG V Q LF +VRE + L + +EQ ++K+ +
Sbjct: 66 ---AKERRK--SIGYVMQDVDYQLFTD-SVREELLLGL-KELDAGNEQAETVLKD----L 114
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
L +++R P LSGG K+R+A+A +++ ++L++DEPT+GLD V +
Sbjct: 115 DLYALKERHPLSLSGGQKQRLAIAAALLSG-------KDLLIFDEPTSGLDYKNMERVGE 167
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
LIR + +G+ + +V+TH + + + DR++ L G IV
Sbjct: 168 LIRELAAQGK----------AVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 5e-31
Identities = 87/265 (32%), Positives = 131/265 (49%), Gaps = 33/265 (12%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KG 146
ID R+V +G+ H L+G+S +I V IGPSG GKST L++ + L P +G
Sbjct: 4 IDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG 63
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
E+ I GR ++ LR +G+VFQ F ++ ENV + L N + I
Sbjct: 64 EIRIDGRNI--YDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIR 120
Query: 205 ELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ V+E L L V+D+L LSGG ++R+ +AR++ +V P VLL DEP
Sbjct: 121 QRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM-------AVSPSVLLMDEP 173
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
+ LDPI++ VE+LI + K + V+VTH R D+ F Y G+
Sbjct: 174 ASALDPISTAKVEELIHELKKD-----------YTIVIVTHNMQQAARVSDKTAFFYMGE 222
Query: 321 IVWQGMTHE-FTSSSNPIVQQFASG 344
+V T + FT+ Q + +G
Sbjct: 223 MVEYDDTKKIFTNPEKEATQNYITG 247
|
Length = 250 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 6e-31
Identities = 86/263 (32%), Positives = 134/263 (50%), Gaps = 23/263 (8%)
Query: 91 LIDCRNVYKSF--GEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I N+ K F G K L VS + G+ G+IG SG GKST+++ + L P G
Sbjct: 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR-IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
V + G+ L + E R IG++FQ L S TV NV L E ++I
Sbjct: 61 SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEIKR 119
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V E LA VGL D PS LSGG K+RVA+AR++ + P+VLL DE T+ LD
Sbjct: 120 KVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL-------ASNPKVLLCDEATSALD 172
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
P + + +L++ ++++ GL + +++TH+ ++R D + + G+++ QG
Sbjct: 173 PATTQSILELLKEINRR--LGL-------TILLITHEMDVVKRICDCVAVISNGELIEQG 223
Query: 326 MTHE-FTSSSNPIVQQFASGSLE 347
E F+ P+ Q+F +L
Sbjct: 224 TVSEIFSHPKTPLAQKFIRSTLH 246
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 7e-31
Identities = 75/268 (27%), Positives = 133/268 (49%), Gaps = 33/268 (12%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI-------IAGLLAP 143
+I+ N +GEK ++ V+ KI + IIGPSG GK+T+L+ I G
Sbjct: 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV- 61
Query: 144 DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
+G++Y +G+ D ++G+VFQ F +++ +NV F + ++
Sbjct: 62 -EGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF-PMSIYDNVAFGPRIHGVKSKHKL 119
Query: 204 SELVKENLAAVGL----KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
+V+E+L L K ++ + LSGG ++R+ +AR++ +VEPEV+L DE
Sbjct: 120 DRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL-------AVEPEVILLDE 172
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319
PT+ LDPIA+ +E L+ + + + V+VTH R D + F+Y G
Sbjct: 173 PTSALDPIATQRIEKLLEELSEN-----------YTIVIVTHNIGQAIRIADYIAFMYRG 221
Query: 320 KIVWQGMTHEFTSS-SNPIVQQFASGSL 346
+++ G T E N + +++ +G +
Sbjct: 222 ELIEYGPTREIVERPKNKLTEEYLTGKI 249
|
Length = 250 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 8e-31
Identities = 77/264 (29%), Positives = 119/264 (45%), Gaps = 62/264 (23%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I N+ ++G++ +L VS + GE +G++G +G GKST+LKI+AG L PD GEV
Sbjct: 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV--GFL-LYENSKMRDEQISELV 207
GLR+G + Q L TV + V GF L E +E + L
Sbjct: 63 P-------------KGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 208 KENLAAVG---------------------LKGV----EDRLPSELSGGMKKRVALARSII 242
+ + L G+ EDR S LSGG ++RVALAR+++
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302
EP++LL DEPT LD + +ED ++ G + +VV+H
Sbjct: 170 -------EEPDLLLLDEPTNHLDLESIEWLEDYLK--RYPG-----------TVIVVSHD 209
Query: 303 HSTIRRAVDRLIFLYEGKI-VWQG 325
+ ++ L GK+ ++G
Sbjct: 210 RYFLDNVATHILELDRGKLTPYKG 233
|
Length = 530 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 44/263 (16%)
Query: 70 NDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGT 128
+ K + G ++++ NV K + +L+ +SF+I G+ + I+GP+G
Sbjct: 300 VEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGA 359
Query: 129 GKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS-AALFDSLTVREN 187
GKST+LK++AG L P G V + ++IG Q L TV E
Sbjct: 360 GKSTLLKLLAGELGPLSGTVKVG-------------ETVKIGYFDQHRDELDPDKTVLEE 406
Query: 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVALARSIIFDNT 246
+ S+ + + V+ L G G + ++ LSGG K R+ LA+ ++
Sbjct: 407 L-------SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL---- 455
Query: 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306
P +LL DEPT LD + +E+ + G + ++V+H +
Sbjct: 456 ---QPPNLLLLDEPTNHLDIESLEALEEALLDF----------EGTV---LLVSHDRYFL 499
Query: 307 RRAVDRLIFLYEGKIVWQGMTHE 329
R R I+L E K+ +E
Sbjct: 500 DRVATR-IWLVEDKVEEFEGGYE 521
|
Length = 530 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-30
Identities = 75/249 (30%), Positives = 117/249 (46%), Gaps = 43/249 (17%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ + +G + L VSF +R G V ++GP+G GKST+ ++ L +G++ +
Sbjct: 2 LEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61
Query: 152 GR-----KRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQIS 204
G RA L R+G+VFQ L L+VR+N L Y + + +
Sbjct: 62 GHDLRRAPRAAL--------ARLGVVFQQPTLDLDLSVRQN---LRYHAALHGLSRAEAR 110
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
+ E LA +GL D EL+GG ++RV +AR+++ P +LL DEPT GL
Sbjct: 111 ARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLH-------RPALLLLDEPTVGL 163
Query: 265 DPIA----STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
DP + + V L R + GL S + TH I A DRL+ L+ G+
Sbjct: 164 DPASRAAITAHVRALAR------DQGL-------SVLWATHLVDEI-EADDRLVVLHRGR 209
Query: 321 IVWQGMTHE 329
++ G E
Sbjct: 210 VLADGAAAE 218
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-30
Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 14/236 (5%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I N+ S + +L GVS +R GE + I+GP+G GKST+LK ++G L+PD GEV +
Sbjct: 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRD-EQISELVKE 209
G EE++ R ++ Q+++L TV+E V + R+ E+ + +
Sbjct: 61 NGVPLNSW-PPEELARHR-AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
LAA L G+ R LSGG ++RV LAR ++ L DEPT+ LD
Sbjct: 119 ALAATDLSGLAGRDYRTLSGGEQQRVQLAR-VLAQLWPPVPSGRWLFLDEPTSALDIAHQ 177
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
L R + ++G + + V H + + DR++ L++G+++ G
Sbjct: 178 HHTLRLARQLAREG----------GAVLAVLHDLNLAAQYADRIVLLHQGRVIASG 223
|
Length = 259 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-30
Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 69/236 (29%)
Query: 92 IDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
++ NV SF E +LR VSF I GE++ IIGPSG+GKST+ ++I GLL P G
Sbjct: 1 LEVENV--SFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGR 58
Query: 148 VYIRGRKRAGLIS--DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
V + G IS D G +G + Q LF ++ EN+
Sbjct: 59 VRLDGAD----ISQWDPNELGDHVGYLPQDDELFSG-SIAENI----------------- 96
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
LSGG ++R+ LAR++ + P +L+ DEP + LD
Sbjct: 97 ---------------------LSGGQRQRLGLARALYGN-------PRILVLDEPNSHLD 128
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
+ I ++ G A+ +V+ H+ T+ A DR++ L +G++
Sbjct: 129 VEGERALNQAIAALKAAG----------ATRIVIAHRPETLASA-DRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-30
Identities = 73/226 (32%), Positives = 125/226 (55%), Gaps = 25/226 (11%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
+ L+ VSF + GE V I+G +G+GKST+ K++ GLL P+ G + + G +S+E
Sbjct: 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV----LSEE 74
Query: 163 EISGLR--IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV 219
+ +R +G+VFQ+ F TV+++V F L EN + E++ E V + L VG++
Sbjct: 75 TVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL-ENIGVPREEMVERVDQALRQVGMEDF 133
Query: 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV 279
+R P LSGG K+RVA+A + +++P++++ DE T+ LDP V + +R
Sbjct: 134 LNREPHRLSGGQKQRVAIAGVL-------ALQPDIIILDEATSMLDPRGRREVLETVRQ- 185
Query: 280 HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
L I + + +TH +A DR+I + +G+I+ +G
Sbjct: 186 -------LKEQKGI-TVLSITHDLDEAAQA-DRVIVMNKGEILEEG 222
|
Length = 279 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 5e-30
Identities = 78/230 (33%), Positives = 117/230 (50%), Gaps = 40/230 (17%)
Query: 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG----LR-IGLVFQSA 176
++GPSG GK+T+L+++AG PD G + ++ E+++ LR I +VFQS
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSI---------MLDGEDVTNVPPHLRHINMVFQSY 51
Query: 177 ALFDSLTVRENVGFLLYENSKMR---DEQISELVKENLAAVGLKGVEDRLPSELSGGMKK 233
ALF +TV ENV F L KMR +I V E L V L+ DR P +LSGG ++
Sbjct: 52 ALFPHMTVEENVAFGL----KMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQ 107
Query: 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLD-PIASTVVEDLIRSVHKKGENGLANPGN 292
RVALAR+++F +P++LL DEP + LD + + +L + G
Sbjct: 108 RVALARALVF-------KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG--------- 151
Query: 293 IASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQF 341
++V VTH DR+ + +GKI G E + +N V +F
Sbjct: 152 -ITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARF 200
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 5e-30
Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 26/233 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I ++ K +G ++ L VSF+ + G VG +GP+G GKST +KII G L PD G V +
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELVKE 209
G L + +E+ IG + + L+ + VRE + F+ +Y M+ + + + V+E
Sbjct: 63 GED--VLQNPKEVQRN-IGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEE 116
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
+ VGL+ + + +LS G ++RV LA+++I D P+VL+ DEPT GLDP +
Sbjct: 117 MIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD-------PKVLILDEPTTGLDP--N 167
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
+VE IR+V + N G + ++ TH + DR+I + +GKIV
Sbjct: 168 QLVE--IRNV-------IKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-30
Identities = 57/133 (42%), Positives = 74/133 (55%), Gaps = 15/133 (11%)
Query: 131 STILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190
ST+LK+I GLL P G + + G GL S ++ RIG+VFQ LF LTVREN+ F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGL-SSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59
Query: 191 LLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKES 249
K D + E L VGL DR P LSGG K+RVA+AR+++
Sbjct: 60 --GLRDKEADARAEEA----LERVGLPDFLDREPVGTLSGGQKQRVAIARALL------- 106
Query: 250 VEPEVLLYDEPTA 262
+P++LL DEPTA
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 8e-30
Identities = 85/277 (30%), Positives = 145/277 (52%), Gaps = 40/277 (14%)
Query: 84 PEDDGDVLIDCRNVYKSF-GEKHILR----------GVSFKIRHGEAVGIIGPSGTGKST 132
+D VL++ ++ F + LR G+S +R G+ +G++G SG+GKST
Sbjct: 269 LPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKST 328
Query: 133 ILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGF 190
+ + L+ +GE+ G+ GL S +E+ LR + +VFQ + SL+ R VG
Sbjct: 329 LGLALLRLIPS-QGEIRFDGQDIDGL-SRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQ 384
Query: 191 LLYENSKMRDEQIS-----ELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFD 244
++ E ++ + ++S + V E L VGL +R P E SGG ++R+A+AR++I
Sbjct: 385 IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALI-- 442
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304
++PE++L DEPT+ LD V DL+R + +K +GL SY+ ++H +
Sbjct: 443 -----LKPELILLDEPTSALDRSVQAQVLDLLRDLQQK--HGL-------SYLFISHDLA 488
Query: 305 TIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQ 340
+R R+I + +GKIV QG T F + + +
Sbjct: 489 VVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525
|
Length = 534 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-29
Identities = 85/278 (30%), Positives = 134/278 (48%), Gaps = 38/278 (13%)
Query: 69 FNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGT 128
+ + + + D+ ++ RN+ +G+K L +S +I IGPSG
Sbjct: 4 HGITLMALPLLDVLNLSDE-QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGC 62
Query: 129 GKSTILKIIAGL--LAPD---KGEVYIRGRKRAGLISD--EEISGLR--IGLVFQSAALF 179
GKST+L+ + L + +GE+ + G+ I D +++ LR +G+VFQ F
Sbjct: 63 GKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN----IYDKKVDVAELRRRVGMVFQRPNPF 118
Query: 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRV 235
++ ENV + L + E V+ +L L V+DRL LSGG ++R+
Sbjct: 119 PK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL 177
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295
+AR+I ++EPEVLL DEPT+ LDPI++ +E+LI + K +
Sbjct: 178 VIARAI-------AIEPEVLLLDEPTSALDPISTLKIEELITELKSK-----------YT 219
Query: 296 YVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTS 332
V+VTH R D F+Y GK+V G T FTS
Sbjct: 220 IVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS 257
|
Length = 272 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-29
Identities = 53/233 (22%), Positives = 94/233 (40%), Gaps = 70/233 (30%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ R + K FG L GVS +R GE ++G +G GKST++KI++GL PD GE+ +
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G++ + S + I +V+Q
Sbjct: 61 GKEVSFA-SPRDARRAGIAMVYQ------------------------------------- 82
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
LS G ++ V +AR++ + +L+ DEPTA L P
Sbjct: 83 ---------------LSVGERQMVEIARALARN-------ARLLILDEPTAALTPAEVER 120
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
+ +IR + +G + + ++H+ + DR+ L +G++V
Sbjct: 121 LFKVIRRLRAQG----------VAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-29
Identities = 72/230 (31%), Positives = 111/230 (48%), Gaps = 25/230 (10%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR----KRAGLISDEEIS 165
F + I G SG+GK+T++++IAGL PD+GE+ + GR R G+ E
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPS 225
RIG VFQ A LF L+VR N L Y + R + + + +G+ + RLP
Sbjct: 76 --RIGYVFQEARLFPHLSVRGN---LRYGMKRARPSERRISFERVIELLGIGHLLGRLPG 130
Query: 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGEN 285
LSGG K+RVA+ R+++ P +LL DEP A LD + + +H E
Sbjct: 131 RLSGGEKQRVAIGRALL-------SSPRLLLMDEPLAALDDPRKYEILPYLERLHA--EF 181
Query: 286 GLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSN 335
G+ + V+H + R DR++ L +G++ G E +S +
Sbjct: 182 GI-------PILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-29
Identities = 65/175 (37%), Positives = 98/175 (56%), Gaps = 12/175 (6%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L++ RN+ KSF +H + VS I GE ++G SG GKST+L+++AG P G++ +
Sbjct: 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
G +S I ++FQS ALF +TV +N+ F L ++ + E I+ V E
Sbjct: 79 DGVD----LSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE-IASRVNEM 133
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
L V ++ R P +LSGG ++RVALARS+ + P++LL DEP LD
Sbjct: 134 LGLVHMQEFAKRKPHQLSGGQRQRVALARSL-------AKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-29
Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 35/233 (15%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKR-AGL 158
IL VS + G+ + I+G SG+GK+T+L I+G + G++ G+ R
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 159 ISDEEISGLRIGLVFQSAALFDSLTVRENVGF--LLYENSKMRDEQISELVK-ENLAAVG 215
+ V Q L LTVRE + + +L K D + V+ L +
Sbjct: 79 FQK------CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA 132
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IASTVVED 274
L + L +SGG ++RV++A ++ +P+VL+ DEPT+GLD A +V
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQLL-------WDPKVLILDEPTSGLDSFTALNLVST 185
Query: 275 LIRSVHKKGENGLANPGNIASYVVVT-HQ-HSTIRRAVDRLIFLYEGKIVWQG 325
L + LA I V++T HQ S + R DR++ L G+IV+ G
Sbjct: 186 LSQ---------LARRNRI---VILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-29
Identities = 87/274 (31%), Positives = 137/274 (50%), Gaps = 48/274 (17%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAP---- 143
V ++ NV+ FG+ H ++ VS IIGPSG GKST+L+ I + L P
Sbjct: 5 VKLEQLNVH--FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARV 62
Query: 144 ------DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV--GFLLYEN 195
D ++Y RG D R+G+VFQ F ++++ +NV G+ L N
Sbjct: 63 TGKILLDDTDIYDRG-------VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKL--N 113
Query: 196 SKMRDEQISELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVE 251
++ + E+V+ +L V L V+DRL S ELSGG ++R+ +AR+I +V+
Sbjct: 114 GRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI-------AVK 166
Query: 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311
PEV+L DEP + LDPI++ +E+LI + +K + ++VTH R D
Sbjct: 167 PEVILMDEPASALDPISTLKIEELIEELKEK-----------YTIIIVTHNMQQAARVSD 215
Query: 312 RLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASG 344
F Y G +V G T + FT+ + + +G
Sbjct: 216 YTAFFYMGDLVECGETKKIFTTPEKKQTEDYITG 249
|
Length = 252 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-29
Identities = 81/256 (31%), Positives = 128/256 (50%), Gaps = 52/256 (20%)
Query: 92 IDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
I+ +NV Y S + IL+G+S I G+ V ++G SG GKST++ ++ P GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+ G I D + LR IGLV Q LFD T+ EN+ + + + DE++ E
Sbjct: 61 LLDGVD----IRDLNLRWLRSQIGLVSQEPVLFDG-TIAENIRYGKPDAT---DEEVEEA 112
Query: 207 VKENLAA-------------VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
K+ VG +G S+LSGG K+R+A+AR+++ + P+
Sbjct: 113 AKKANIHDFIMSLPDGYDTLVGERG------SQLSGGQKQRIAIARALLRN-------PK 159
Query: 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+LL DE T+ LD + +V++ + K G +V+ H+ STIR A D +
Sbjct: 160 ILLLDEATSALDAESEKLVQEALDRAMK---------GRTT--IVIAHRLSTIRNA-DLI 207
Query: 314 IFLYEGKIVWQGMTHE 329
L G++V QG TH+
Sbjct: 208 AVLQNGQVVEQG-THD 222
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-29
Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 23/224 (10%)
Query: 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
L+ C N+ K + E +L VSF I GE + I+G SG+GKST+L ++ GL P G
Sbjct: 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64
Query: 147 EVYIRGRKRAGLIS--DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
+V G+ + L S E+ ++G ++Q L T ENV L K +I+
Sbjct: 65 DVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA-EIN 123
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
E LAAVGL+ + PSELSGG ++RVA+AR+++ P ++L DEPT L
Sbjct: 124 SRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALV-------NNPRLVLADEPTGNL 176
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308
D + + L+ G N +++VVTH +R
Sbjct: 177 DARNADSIFQLL---------GELNRLQGTAFLVVTHDLQLAKR 211
|
Length = 233 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-29
Identities = 82/237 (34%), Positives = 126/237 (53%), Gaps = 23/237 (9%)
Query: 98 YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157
YK+ E+ L V+ I G V IIG +G+GKST+L+ + GLL P G V I R
Sbjct: 14 YKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITA 73
Query: 158 LISDEEISGLR--IGLVFQ--SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA 213
++++ LR +G+VFQ LF+ TV +++ F N + +E + +E +
Sbjct: 74 GKKNKKLKPLRKKVGIVFQFPEHQLFEE-TVEKDICFGP-MNFGVSEEDAKQKAREMIEL 131
Query: 214 VGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VGL + + R P ELSGG +RVA+A + ++EPEVL+ DEPTAGLDP +
Sbjct: 132 VGLPEELLARSPFELSGGQMRRVAIAGVL-------AMEPEVLVLDEPTAGLDPKGRKEM 184
Query: 273 EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
++ +HK E GL + V+VTH R D+++ +++G + QG E
Sbjct: 185 MEMFYKLHK--EKGL-------TTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232
|
Length = 290 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-29
Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 29/254 (11%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
V SFG L +SF + GE +IGP+G GK+T++ +I G P +GEV G
Sbjct: 9 DGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDT 68
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN--------SKMRDEQISEL 206
+ + I+ IG FQ +F++LTVREN+ L + +++R E+
Sbjct: 69 DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR- 127
Query: 207 VKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
+ E LA +GL DRL + LS G K+ + + + D P++LL DEP AG+
Sbjct: 128 IDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQD-------PKLLLLDEPVAGMTD 180
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326
+ +L++S+ K S +VV H +R D++ L+EG ++ +G
Sbjct: 181 AETEKTAELLKSLAGK-----------HSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229
Query: 327 THEFTSSSNPIVQQ 340
E ++P V +
Sbjct: 230 LDEV--QNDPKVIE 241
|
Length = 249 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-29
Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 38/290 (13%)
Query: 72 SSKSENVNTLFEPEDDGDVL-IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGK 130
+ K V+ L E + +V I N + KH+L ++ I+ + IGPSG GK
Sbjct: 62 NKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGK 121
Query: 131 STILK-------IIAGLLAPDKGEVYIRG-RKRAGLISDEEISGLRIGLVFQSAALFDSL 182
ST L+ +I G +GE+Y G R+ IS E+ RIG+VFQ F+ +
Sbjct: 122 STFLRNLNQLNDLIEG--TSHEGEIYFLGTNTRSKKISSLELR-TRIGMVFQKPTPFE-M 177
Query: 183 TVRENVGFLLYENSKMRDEQISE-LVKENLAAVGL----KGVEDRLPSELSGGMKKRVAL 237
++ +NV + N+ + D +I E +V+++L + L K D+ + LSGG ++R+ +
Sbjct: 178 SIFDNVAYGP-RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297
AR+I ++EPEVLL DEPT+ LDPIA+ +E+LI + KK S +
Sbjct: 237 ARAI-------ALEPEVLLMDEPTSALDPIATAKIEELILELKKK-----------YSII 278
Query: 298 VVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASGSL 346
+VTH + +R D +F Y+G I G T F N + + SG +
Sbjct: 279 IVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDYISGKI 328
|
Length = 329 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-29
Identities = 83/295 (28%), Positives = 132/295 (44%), Gaps = 54/295 (18%)
Query: 73 SKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKST 132
+ + + ++ + R+V +GEK L V I IGPSG GKST
Sbjct: 1 YEMADEKAADKKATATEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKST 60
Query: 133 ILKI------------IAGLLAPDKGEVYIRG----RKRAGLISDEEISGLRIGLVFQSA 176
L+ + G + D ++Y RA R+G+VFQ
Sbjct: 61 FLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRA-----------RVGMVFQKP 109
Query: 177 ALFDSLTVRENVGF--LLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSE---LSGG 230
F ++ ENV + ++ ++ + E + E+V+ +L GL V+DRL LSGG
Sbjct: 110 NPFPK-SIYENVAYGPRIHGLARSKAE-LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGG 167
Query: 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANP 290
++R+ +AR+I +V PEV+L DEP + LDPIA+ VE+LI + +
Sbjct: 168 QQQRLCIARAI-------AVSPEVILMDEPCSALDPIATAKVEELIDELRQN-------- 212
Query: 291 GNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASG 344
+ V+VTH R R F + G +V G T + FT+ +P Q + +G
Sbjct: 213 ---YTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPDDPRTQDYITG 264
|
Length = 267 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-29
Identities = 73/254 (28%), Positives = 127/254 (50%), Gaps = 40/254 (15%)
Query: 92 IDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
I +V + IL +S +I+ GE VGI+G SG+GKST+ K+I P+ G V
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--------LYENSKMRD- 200
+ G A ++D ++G+V Q LF + ++R+N+ + E +K+
Sbjct: 61 VDGHDLA--LADPAWLRRQVGVVLQENVLF-NRSIRDNIALADPGMSMERVIEAAKLAGA 117
Query: 201 -EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
+ ISEL + VG +G LSGG ++R+A+AR++I + P +L++DE
Sbjct: 118 HDFISELPEGYDTIVGEQGA------GLSGGQRQRIAIARALIHN-------PRILIFDE 164
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319
T+ LD + + +R++H +++ H+ ST++ A DR+I + +G
Sbjct: 165 ATSALDYESEHAI---MRNMHDICAGRTV--------IIIAHRLSTVKNA-DRIIVMEKG 212
Query: 320 KIVWQGMTHEFTSS 333
+IV QG E +
Sbjct: 213 RIVEQGSHDELLAE 226
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-29
Identities = 74/269 (27%), Positives = 132/269 (49%), Gaps = 35/269 (13%)
Query: 91 LIDCRNVYKSFGEK---------HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141
L++ RN+ K+F + ++ VSF +R G+ + IIG +G+GKST+ K++AG++
Sbjct: 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
Query: 142 APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE----NSK 197
P GE+ I D RI ++FQ SL R +G +L N+
Sbjct: 64 EPTSGEILINDHPLH--FGDYSFRSKRIRMIFQDPN--TSLNPRLRIGQILDFPLRLNTD 119
Query: 198 MRDEQISELVKENLAAVGLKGVEDRL-PSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256
+ EQ + + E L VGL P L+ G K+RVALAR++I + P++++
Sbjct: 120 LEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALI-------LRPKIII 172
Query: 257 YDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316
DE A LD + + +L+ + + + G+ SY+ VT I+ D+++ +
Sbjct: 173 ADEALASLDMSMRSQLINLM--LELQEKQGI-------SYIYVTQHIGMIKHISDQVLVM 223
Query: 317 YEGKIVWQGMTHE-FTSSSNPIVQQFASG 344
+EG++V +G T + S + + ++
Sbjct: 224 HEGEVVERGSTADVLASPLHELTKRLIES 252
|
Length = 267 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-29
Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 53/270 (19%)
Query: 92 IDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
I +N+ K F +K L VS +I GE + IIG +G+GK+T ++ + LL PD G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 147 EVYI-----RGRKRAGLISDEEISGL-----------------RIGLVFQSA--ALFDSL 182
+ + +K+ + R+G+VFQ A LF+
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ- 121
Query: 183 TVRENVGF--LLYENSKMRDEQISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALAR 239
T+ +++ F + SK E+ + + + VGL + R P ELSGG K+RVALA
Sbjct: 122 TIEKDIIFGPVSMGVSK---EEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA- 177
Query: 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299
I+ ++EP+ L++DEPTAGLDP + ++ +++K+G+ + ++V
Sbjct: 178 GIL------AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK----------TIILV 221
Query: 300 THQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
TH + R IF +GKI+ G T++
Sbjct: 222 THDLDNVLEWTKRTIFFKDGKIIKDGDTYD 251
|
Length = 305 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 4e-29
Identities = 70/242 (28%), Positives = 110/242 (45%), Gaps = 30/242 (12%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
+ ++ R + K F VS ++ GE ++G +G GKST++KI+ GL PD GE
Sbjct: 1 MEPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQIS 204
+ + G++ + S + L IG+V Q L +LTV EN+ L E SK + Q
Sbjct: 61 IRVDGKEVR-IKSPRDAIRLGIGMVHQHFMLVPTLTVAENI-ILGLEPSKGGLIDRRQAR 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRV----ALARSIIFDNTKESVEPEVLLYDEP 260
+KE GL D ++LS G ++RV AL R +L+ DEP
Sbjct: 119 ARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRG-----------ARLLILDEP 167
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
TA L P ++L + + G + + +TH+ + DR+ L GK
Sbjct: 168 TAVLTPQE---ADELFEILRRLAAEGK-------TIIFITHKLKEVMAIADRVTVLRRGK 217
Query: 321 IV 322
+V
Sbjct: 218 VV 219
|
Length = 501 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-29
Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 28/245 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KG 146
I +++ +G+ L+ ++ I + +IGPSG GKST L+ + + L P +G
Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEG 63
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
EV + G+ D R+G+VFQ F +++ +NV + + +++ E+
Sbjct: 64 EVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEI 122
Query: 207 VKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
V+++L L V+DRL LSGG ++R+ +AR++ +VEPEVLL DEPT+
Sbjct: 123 VEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL-------AVEPEVLLMDEPTS 175
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
LDPI++ +E+LI+ + K + V+VTH R D+ F G+IV
Sbjct: 176 ALDPISTLKIEELIQELKKD-----------YTIVIVTHNMQQASRISDKTAFFLNGEIV 224
Query: 323 WQGMT 327
G T
Sbjct: 225 EFGDT 229
|
Length = 250 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 5e-29
Identities = 89/301 (29%), Positives = 140/301 (46%), Gaps = 50/301 (16%)
Query: 58 DLGTDGFPATKFND-SSKSENVNTLFEPEDDGDVLIDCRNVYKSF-GEKH-ILRGVSFKI 114
LG A + ND + V E ++ RNV ++ G++ L+ + +
Sbjct: 302 HLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTL 361
Query: 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 174
GE V I+G SG+GKST+L+++AG P +G + + G + A L DE+ I ++ Q
Sbjct: 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL--DEQALRETISVLTQ 419
Query: 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-------- 226
LF T+R+N L N DE++ ++ VGL E L S
Sbjct: 420 RVHLFSG-TLRDN---LRLANPDASDEELWAALQ----QVGL---EKLLESAPDGLNTWL 468
Query: 227 ------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH 280
LSGG ++R+ALAR+++ D + L DEPT GLDPI V L+ H
Sbjct: 469 GEGGRRLSGGERRRLALARALLHDAP-------LWLLDEPTEGLDPITERQVLALLFE-H 520
Query: 281 KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQ 340
+G + ++VTH+ + R DR+I L GKI+ +G TH ++N ++
Sbjct: 521 AEG----------KTLLMVTHRLRGLERM-DRIIVLDNGKIIEEG-THAELLANNGRYKR 568
Query: 341 F 341
Sbjct: 569 L 569
|
Length = 573 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 6e-29
Identities = 76/252 (30%), Positives = 133/252 (52%), Gaps = 30/252 (11%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KGEVYIRGRKR 155
+G K IL ++ I E IGPSG GKST L+ + P+ KGE+ I G
Sbjct: 15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ-ISELVKENLAAV 214
+ ++ + ++G+VFQ F ++ +NV + + ++++ + E+V+++L +V
Sbjct: 75 YSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSV 133
Query: 215 GL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
GL + + DRL ELSGG ++R+ +AR+I +V+P +LL DEP + LDP+A+
Sbjct: 134 GLWEELGDRLKDSAFELSGGQQQRLCIARAI-------AVKPTMLLMDEPCSALDPVATN 186
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE- 329
V+E+LI+ + K + +VVTH ++ DR+ F G+IV T E
Sbjct: 187 VIENLIQELKKN-----------FTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
Query: 330 FTSSSNPIVQQF 341
F + + +++
Sbjct: 236 FKNPQSSKTKRY 247
|
Length = 251 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 6e-29
Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 40/262 (15%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ + SF L +S + GE IIGP+G GK+T++ +I G PD+G V
Sbjct: 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLF 61
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN--------SKMRDEQ 202
G GL + +I+ IG FQ +F++LTV EN+ L + ++ E+
Sbjct: 62 GGTDLTGL-PEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEE 120
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
++E L +GL DRL LS G K+ + + ++ D P++LL DEP A
Sbjct: 121 KDR-IEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD-------PKLLLLDEPVA 172
Query: 263 GLDPIASTVVE-----DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317
G+ T E +L++S+ K S VVV H +R D++ L+
Sbjct: 173 GM-----TDEETEKTAELLKSLAGK-----------HSVVVVEHDMEFVRSIADKVTVLH 216
Query: 318 EGKIVWQGMTHEFTSSSNPIVQ 339
+G ++ +G + ++P V
Sbjct: 217 QGSVLAEGSLDQV--QADPRVI 236
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 6e-29
Identities = 82/263 (31%), Positives = 121/263 (46%), Gaps = 66/263 (25%)
Query: 91 LIDCRNVYKSFG-----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK 145
+I N K+F EK L G+S +I G+ V +IG +G GKST+L IAG L P
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60
Query: 146 GEVYIRGR--------KRAGLISDEEISGLRIGLVFQS--AALFDSLTVRENV------- 188
G++ I G KRA L++ VFQ A LT+ EN+
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLAR----------VFQDPLAGTAPELTIEENLALAESRG 110
Query: 189 ---GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE---LSGGMKKRVALARSII 242
G N + R +E LA +GL G+E+RL LSGG ++ ++L + +
Sbjct: 111 KKRGLSSALNERRRSS-----FRERLARLGL-GLENRLSDRIGLLSGGQRQALSLLMATL 164
Query: 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302
P++LL DE TA LDP + V +L + ++ + + ++VTH
Sbjct: 165 -------HPPKILLLDEHTAALDPKTAEFVMELTAKIVEE--------HKLTT-LMVTH- 207
Query: 303 HSTIRRAVD---RLIFLYEGKIV 322
+ A+D RLI L+ GKIV
Sbjct: 208 --NMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-29
Identities = 79/254 (31%), Positives = 122/254 (48%), Gaps = 49/254 (19%)
Query: 92 IDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
++ +NV + +LR +S I GE V ++GPSG+GKST++ +I D G +
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + D ++ LR IGLV Q LF+ TV EN+ Y E++ E
Sbjct: 61 IDGHD----VRDYTLASLRRQIGLVSQDVFLFND-TVAENI---AYGRPGATREEVEEAA 112
Query: 208 KENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLL 256
+ A LP +LSGG ++R+A+AR+++ D P +L+
Sbjct: 113 R----AANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD-------PPILI 161
Query: 257 YDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
DE T+ LD T E L+ ++ + +N V+ H+ STI A DR++
Sbjct: 162 LDEATSALD----TESERLVQAALERLMKNRTT--------FVIAHRLSTIENA-DRIVV 208
Query: 316 LYEGKIVWQGMTHE 329
L +GKIV +G THE
Sbjct: 209 LEDGKIVERG-THE 221
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 7e-29
Identities = 83/279 (29%), Positives = 139/279 (49%), Gaps = 42/279 (15%)
Query: 58 DLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHG 117
D +DG T ++ + G+ +I+ R++ +G++ L VS I
Sbjct: 9 DESSDGLITT---TTATDTTDPSGDPAASSGETVIEARDLNVFYGDEQALDDVSMDIPEN 65
Query: 118 EAVGIIGPSGTGKSTILKIIAGL-----LAPDKGEVYIRGRKRAGLISDEEISGL----R 168
+ +IGPSG GKST L+ I + A +GE+ RG+ + D ++ + R
Sbjct: 66 QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN----VYDADVDPVALRRR 121
Query: 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLPS-- 225
IG+VFQ F ++ +NV + L + D I E V+E+L L V+D+L S
Sbjct: 122 IGMVFQKPNPFPK-SIYDNVAYGL--KIQGYDGDIDERVEESLRRAALWDEVKDQLDSSG 178
Query: 226 -ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
+LSGG ++R+ +AR+I + +PEV+L DEP + LDP+A++ +EDLI + ++
Sbjct: 179 LDLSGGQQQRLCIARAI-------APDPEVILMDEPASALDPVATSKIEDLIEELAEE-- 229
Query: 285 NGLANPGNIASYVVVTHQHSTIRRAVDRL-IFLYEGKIV 322
+ V+VTH R D+ +FL G++V
Sbjct: 230 ---------YTVVIVTHNMQQAARISDKTAVFLTGGELV 259
|
Length = 285 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 9e-29
Identities = 76/227 (33%), Positives = 113/227 (49%), Gaps = 30/227 (13%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
V K +GE+ +L + I G+ V ++G SG GKST+L+++AGL P GE+ + G
Sbjct: 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTA 74
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
++ L+FQ A L V +NVG L + Q LAAV
Sbjct: 75 PLAEARED------TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA-------LAAV 121
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL + P+ LSGG K+RVALAR++I P +LL DEP LD + ++D
Sbjct: 122 GLADRANEWPAALSGGQKQRVALARALIH-------RPGLLLLDEPLGALDALTRIEMQD 174
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
LI S+ + ++G + ++VTH S DR++ + EGKI
Sbjct: 175 LIESLWQ--QHGF-------TVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-28
Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164
L+G+S I G ++GP+G GKST+L + G+ P +G V + GR+ ++ E
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE----VNAENE 74
Query: 165 SGLR--IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE 220
+R +GLVFQ +F S TV ++V F N + +++ V+E L AV +
Sbjct: 75 KWVRSKVGLVFQDPDDQVF-SSTVWDDVAFGP-VNMGLDKDEVERRVEEALKAVRMWDFR 132
Query: 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH 280
D+ P LS G KKRVA+A + +++P+V++ DEP A LDP + +++ +H
Sbjct: 133 DKPPYHLSYGQKKRVAIAGVL-------AMDPDVIVLDEPMAYLDPRGQETLMEILDRLH 185
Query: 281 KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+G+ + +V TH D++I L EG+++ +G
Sbjct: 186 NQGK----------TVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-28
Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 31/218 (14%)
Query: 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153
++ G + + G+SF + GEA+ + GP+G+GK+T+L++IAGLL P G + + G
Sbjct: 5 GEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGG 64
Query: 154 KRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELVKENL 211
D+ + A+ +LTV EN+ F + I+ L
Sbjct: 65 D-----IDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGG---EELDIA----AAL 112
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
AVGL + LS G K+RVALAR ++ + + + DEPTA LD A +
Sbjct: 113 EAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP-------IWILDEPTAALDAAAVAL 165
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
+LIR+ H G+ + TH + A
Sbjct: 166 FAELIRA-HLAQ-GGIV--------IAATHIPLGLPGA 193
|
Length = 207 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 40/226 (17%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
G + LR VSF + GE V ++GPSG GKST+L ++ G + P +G + + G A D
Sbjct: 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA--D 390
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED 221
+ +I V Q LF T+ EN+ R + ++E L GL
Sbjct: 391 ADSWRDQIAWVPQHPFLFAG-TIAENIRL-------ARPDASDAEIREALERAGLDEFVA 442
Query: 222 RLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
LP + LSGG +R+ALAR+ + D +LL DEPTA LD
Sbjct: 443 ALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRD-------APLLLLDEPTAHLDAETEA 495
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316
V + +R++ + + ++VTH+ + A DR++ L
Sbjct: 496 EVLEALRALAQG-----------RTVLLVTHRLALAALA-DRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-28
Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 40/243 (16%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGL 158
KH+L+ VS + GE + ++G SG GK+T++ +A G V + G
Sbjct: 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMP---- 91
Query: 159 ISDEEISGLRIGLVFQSAALFDSLTVRENVGF---LLYENSKMRDEQISELVKENLAAVG 215
I +E+ V Q +LTVRE++ F L + E+ E V E L A+G
Sbjct: 92 IDAKEMR-AISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKR-ERVDEVLQALG 149
Query: 216 LK-------GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-I 267
L+ GV R+ LSGG +KR+A A ++ D P +L DEPT+GLD +
Sbjct: 150 LRKCANTRIGVPGRVKG-LSGGERKRLAFASELLTD-------PPLLFCDEPTSGLDSFM 201
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ-HSTIRRAVDRLIFLYEGKIVWQGM 326
A +VV+ L GLA G + HQ S + D++I + EG++ + G
Sbjct: 202 AYSVVQVL---------KGLAQKGKTI--ICTIHQPSSELFELFDKIILMAEGRVAYLGS 250
Query: 327 THE 329
+
Sbjct: 251 PDQ 253
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-28
Identities = 79/267 (29%), Positives = 133/267 (49%), Gaps = 37/267 (13%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAP---DKG 146
I+ N+ F + HIL+ V+ I +IGPSG GKST ++ + + L P +G
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEG 63
Query: 147 EVYIRGRKRAGLISDEEISGL----RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
+Y+ G I D + + ++G+VFQ F ++ +NV + L + + ++
Sbjct: 64 HIYLDGVD----IYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDF 118
Query: 203 ISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
I E V+E+L A L V+D+L LSGG ++R+ +AR+I +V PEV+L D
Sbjct: 119 IEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI-------AVSPEVILMD 171
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
EP + LDPI++T +EDLI + + + V+VTH R F
Sbjct: 172 EPCSALDPISTTKIEDLIHKLKED-----------YTIVIVTHNMQQATRVSKYTSFFLN 220
Query: 319 GKIVWQGMTHE-FTSSSNPIVQQFASG 344
G+I+ G+T + F + + + + +G
Sbjct: 221 GEIIESGLTDQIFINPKDKRTEDYITG 247
|
Length = 250 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-28
Identities = 74/255 (29%), Positives = 130/255 (50%), Gaps = 21/255 (8%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+L VS I GE VG++G SG GKST+ +++ GL P +G V RG+ L
Sbjct: 22 QRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81
Query: 162 EEISGLR-IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218
+ + R + LVFQ + A+ +TVR+ +G L + + + + + E L VGL+
Sbjct: 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 219 -VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
D+LP +LSGG +R+ +AR++ +V+P++++ DE + LD + V+ +L+R
Sbjct: 142 EDADKLPRQLSGGQLQRINIARAL-------AVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 278 SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPI 337
+ + G A Y+ +TH ++ R+ + +G+IV + + S +P
Sbjct: 195 KL--QQAFGTA-------YLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPA 245
Query: 338 VQQFASGSL-EGPIR 351
+ S L E P+R
Sbjct: 246 GRNLQSAVLPEHPVR 260
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 84/302 (27%), Positives = 130/302 (43%), Gaps = 46/302 (15%)
Query: 54 APPRDLGTDGFPAT--------KFNDSSKSENVNT----LFEPEDDGDVLIDCRNVYKSF 101
P RDLG+ F A K +S E ++ + I N+ +
Sbjct: 272 QPLRDLGSF-FHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRY 330
Query: 102 GE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160
+ K L ++ I+ G+ ++G SG GKST+L ++ G LAP +GE+ + G L S
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDL-S 389
Query: 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE-NLAAV----- 214
E +I V Q+ LF T+REN+ DE+I + + L
Sbjct: 390 PEAWRK-QISWVSQNPYLFAG-TIRENILLA---RPDASDEEIIAALDQAGLLEFVPKPD 444
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL V + LSGG +R+ALAR+++ +LL DEPTA LD ++
Sbjct: 445 GLDTVIGEGGAGLSGGQAQRLALARALLSP-------ASLLLLDEPTAHLDAETEQIILQ 497
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSS 334
++ K + +V+TH+ A DR++ L G++V QG THE S
Sbjct: 498 ALQE-LAKQ----------KTVLVITHRLEDAADA-DRIVVLDNGRLVEQG-THEELSEK 544
Query: 335 NP 336
Sbjct: 545 QG 546
|
Length = 559 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-28
Identities = 73/249 (29%), Positives = 122/249 (48%), Gaps = 28/249 (11%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD- 144
++++ +N+ +GEKH L ++ I +IGPSG GKST+L+ + L P
Sbjct: 3 MEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGC 62
Query: 145 --KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
G++ G +D +IG+VFQ F ++ ENV + + + +
Sbjct: 63 RITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKT 121
Query: 203 ISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+ +V+++L L V+DRL LSGG ++R+ +AR++ +V PEV+L D
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL-------AVNPEVILMD 174
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
EP + LDPIA+ +EDLI + K+ + ++VTH R D F+Y
Sbjct: 175 EPCSALDPIATAKIEDLIEDLKKE-----------YTVIIVTHNMQQAARVSDYTGFMYL 223
Query: 319 GKIVWQGMT 327
GK++ T
Sbjct: 224 GKLIEFDKT 232
|
Length = 253 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-28
Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 24/228 (10%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
E L V+ I G IG +G+GKSTI++++ GL P +G V + ++
Sbjct: 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78
Query: 163 EISGLR--IGLVFQ--SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-K 217
+I +R +GLVFQ + LF+ TV ++V F +N + E+ L +E LA VG+ +
Sbjct: 79 DIKQIRKKVGLVFQFPESQLFEE-TVLKDVAFGP-QNFGVSQEEAEALAREKLALVGISE 136
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
+ ++ P ELSGG +RVA+A I+ ++EP++L+ DEPTAGLDP + L +
Sbjct: 137 SLFEKNPFELSGGQMRRVAIA-GIL------AMEPKILVLDEPTAGLDPKGRKELMTLFK 189
Query: 278 SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+H+ G + V+VTH + D + L +GK+V G
Sbjct: 190 KLHQSG----------MTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227
|
Length = 280 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-28
Identities = 83/252 (32%), Positives = 119/252 (47%), Gaps = 52/252 (20%)
Query: 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
I+ RNV S+ E L VS IR GE V IIG G+GKST+LK++AGL P G V
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
+ G + ++ IG V Q LF T+R+N + DE+I
Sbjct: 63 LDGTD-IRQLDPADLRR-NIGYVPQDVTLF-YGTLRDN---ITLGAPLADDERI------ 110
Query: 210 NLAAVGLKGVED---RLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVL 255
L A L GV D + P LSGG ++ VALAR+++ D P +L
Sbjct: 111 -LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND-------PPIL 162
Query: 256 LYDEPTAGLDPIAS--TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
L DEPT+ +D + S + E L + + K + +++TH+ S + VDR+
Sbjct: 163 LLDEPTSAMD-MNSEERLKERLRQLLGDK------------TLIIITHRPSLL-DLVDRI 208
Query: 314 IFLYEGKIVWQG 325
I + G+IV G
Sbjct: 209 IVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 4e-28
Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 15/184 (8%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
RN+ S GE+ + G+SF + GEA+ + GP+G GK+T+L+I+AGLL PD GEV G
Sbjct: 4 RNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTA 63
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
A + + L +G L L+ EN+ F + Q + +++ LAAV
Sbjct: 64 LAEQRDEPHRNILYLG---HLPGLKPELSALENLHFW---AAIHGGAQRT--IEDALAAV 115
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL G ED ++LS G ++R+ALAR + + + DEPT LD ++
Sbjct: 116 GLTGFEDLPAAQLSAGQQRRLALARLWL-------SRAPLWILDEPTTALDKAGVALLAG 168
Query: 275 LIRS 278
L+R+
Sbjct: 169 LLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 5e-28
Identities = 88/258 (34%), Positives = 133/258 (51%), Gaps = 44/258 (17%)
Query: 88 GDVLIDCRNV---YKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141
+ +I C+NV Y+S E K L V+ +++ GE + I+G +G+GKSTI K + LL
Sbjct: 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL 60
Query: 142 APDKGEVYIRGRKRAGLISDEE----ISGLRIGLVFQS------AALFDSLTVRENVGFL 191
P +G+VY+ G SDEE I + G+VFQ+ A + V E+V F
Sbjct: 61 IPSEGKVYVDGLD----TSDEENLWDIRN-KAGMVFQNPDNQIVATI-----VEEDVAFG 110
Query: 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251
EN + E+I E V E+L VG+ P LSGG K+RVA+A + ++
Sbjct: 111 P-ENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL-------AMR 162
Query: 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311
PE +++DEPTA LDP V + I+ ++KK I + +++TH A D
Sbjct: 163 PECIIFDEPTAMLDPSGRREVVNTIKELNKK--------YGI-TIILITHYMEEAVEA-D 212
Query: 312 RLIFLYEGKIVWQGMTHE 329
R+I + GK+V +G E
Sbjct: 213 RIIVMDSGKVVMEGTPKE 230
|
Length = 280 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 5e-28
Identities = 80/267 (29%), Positives = 136/267 (50%), Gaps = 34/267 (12%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---K 145
L+ ++V +G+K ++ V+ ++ G +IGPSG GK+T L+ I + L P
Sbjct: 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT 63
Query: 146 GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV--GFLLYENSKMRD-EQ 202
G + + G+ G D R+G+VFQ F +++V +NV G L + +RD +
Sbjct: 64 GRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKL---AGIRDRDH 120
Query: 203 ISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+ E+ + +L L V+DRL + LSGG ++R+ +AR++ +VEPE+LL D
Sbjct: 121 LMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL-------AVEPEILLMD 173
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
EPT+ LDP ++ +EDL+ + K + + ++VTH R D F
Sbjct: 174 EPTSALDPASTARIEDLMTDLKK-----------VTTIIIVTHNMHQAARVSDTTSFFLV 222
Query: 319 GKIVWQGMTHE-FTSSSNPIVQQFASG 344
G +V G T + FT+ + + + SG
Sbjct: 223 GDLVEHGPTDQLFTNPRDERTEAYVSG 249
|
Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-28
Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 28/231 (12%)
Query: 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR----KRAGLIS 160
H L+G++ I+ GE I+G +G GKST+ + + G+L P G + G+ R GL+
Sbjct: 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79
Query: 161 DEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218
E +G+VFQ LF S +V ++V F N K+ ++++ + V L G++
Sbjct: 80 LRE----SVGMVFQDPDNQLF-SASVYQDVSFGAV-NLKLPEDEVRKRVDNALKRTGIEH 133
Query: 219 VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278
++D+ LS G KKRVA+A ++ +EP+VL+ DEPTAGLDP+ + + L+
Sbjct: 134 LKDKPTHCLSFGQKKRVAIAGVLV-------MEPKVLVLDEPTAGLDPMGVSEIMKLLVE 186
Query: 279 VHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ K E GL + ++ TH + D + + EG+++ QG E
Sbjct: 187 MQK--ELGL-------TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228
|
Length = 283 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-27
Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 33/253 (13%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I NV KS+G K +L VS I G IIGP+G GKST+L +++ LL D GE+ I
Sbjct: 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60
Query: 151 RGRKRAGLISDE---EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR----DEQI 203
G + S E ++S L+ Q + LTVR+ VGF + S+ R D +I
Sbjct: 61 DGLELTSTPSKELAKKLSILK-----QENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI 115
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ E + + L+ + DR ELSGG ++R +A + D + +L DEP
Sbjct: 116 ---INEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDT-------DYVLLDEPLNN 165
Query: 264 LD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
LD + +++ L R + G+ + VVV H + D ++ L GK+V
Sbjct: 166 LDMKHSVQIMKILRRLADELGK----------TIVVVLHDINFASCYSDHIVALKNGKVV 215
Query: 323 WQGMTHEFTSSSN 335
QG E
Sbjct: 216 KQGSPDEIIQPEI 228
|
Length = 252 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-27
Identities = 78/258 (30%), Positives = 124/258 (48%), Gaps = 37/258 (14%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KGEVYIRGRKR 155
+G+ L +S + + +IGPSG GKST L+ + + L P +GE+ + G
Sbjct: 16 YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN- 74
Query: 156 AGLISDEEISGL----RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
I D + + R+G+VFQ F ++ ENV + L N ++E V+ +L
Sbjct: 75 ---IYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSL 130
Query: 212 AAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
L V+DRL LSGG ++R+ +AR++ +VEPEVLL DEP + LDPI
Sbjct: 131 RHAALWDEVKDRLHESALGLSGGQQQRLCIARAL-------AVEPEVLLMDEPASALDPI 183
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
A+ +E+LI + + + ++VTH R D F Y GK++ G T
Sbjct: 184 ATQKIEELIHELKAR-----------YTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPT 232
Query: 328 HE-FTSSSNPIVQQFASG 344
+ FT + + +G
Sbjct: 233 EQIFTRPREKQTEDYITG 250
|
Length = 253 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-27
Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 42/246 (17%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
N+ +G+ HILRGVS ++ GE ++G +G GK+T+LK + GLL G + + G
Sbjct: 4 SNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG-- 61
Query: 155 RAGLISDEEISGLR--------IGLVFQSAALFDSLTVREN--VGFLLYENSKMRDEQIS 204
E+I+ L I V Q +F LTV EN G R +I
Sbjct: 62 -------EDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGL---AALPRRSRKIP 111
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
+ + E L V LK + R +LSGG ++++A+AR+++ P++LL DEPT G+
Sbjct: 112 DEIYE-LFPV-LKEMLGRRGGDLSGGQQQQLAIARALV-------TRPKLLLLDEPTEGI 162
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRLIFLYEGKIVW 323
P ++++D+ R + + L G +A +++ Q+ R DR + G++V
Sbjct: 163 QP---SIIKDIGRVIRR-----LRAEGGMA--ILLVEQYLDFARELADRYYVMERGRVVA 212
Query: 324 QGMTHE 329
G E
Sbjct: 213 SGAGDE 218
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 43/224 (19%)
Query: 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE------ISGLRIGLVFQS 175
+ GPSG+GK++++ +IAGL PD+G + + GR ++ D E RIG VFQ
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGR----VLVDAEKGIFLPPEKRRIGYVFQD 84
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235
A LF TVR N+ + ++++ + + +Q+ L +G++ + DR P LSGG K+RV
Sbjct: 85 ARLFPHYTVRGNLRYGMWKSMRAQFDQLVAL-------LGIEHLLDRYPGTLSGGEKQRV 137
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE-----NGLANP 290
A+ R+++ PE+LL DEP A LD + +K E L +
Sbjct: 138 AIGRALLTA-------PELLLMDEPLASLD-------------LPRKREILPYLERLRDE 177
Query: 291 GNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSS 334
NI + V+H + R DR++ L GK+ G E S
Sbjct: 178 INI-PILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220
|
Length = 352 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-27
Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 26/227 (11%)
Query: 97 VYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156
Y + K IL +S +R GE + I GPSG GKST+LKI+A L++P G + G +
Sbjct: 10 GYLAGDAK-ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS 68
Query: 157 GLISDEEISGLRIGLVFQSAALFDSLTVRENVGF--LLYENSKMRDEQISELVKENLAAV 214
L E ++ Q+ ALF TV +N+ F + R + L + L
Sbjct: 69 TL--KPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDS 125
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
L + +ELSGG K+R+AL R++ F P++LL DE T+ LD +E+
Sbjct: 126 IL----TKNITELSGGEKQRIALIRNLQF-------MPKILLLDEITSALDESNKRNIEE 174
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
+I H+ N+A + +TH R D++I L G
Sbjct: 175 MI---HR-----YVREQNVA-VLWITHDKDQAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 3e-27
Identities = 76/213 (35%), Positives = 104/213 (48%), Gaps = 41/213 (19%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
G +L GVS + GE V I+GPSG+GKST+L +AGLL P +GEV + G + L D
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD 405
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED 221
E R+ + Q A LFD+ TVREN L DE++ L VGL
Sbjct: 406 EVRR--RVSVCAQDAHLFDT-TVREN---LRLARPDATDEELWAA----LERVGLADWLR 455
Query: 222 RLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IAS 269
LP + LSGG ++R+ALAR+++ D +LL DEPT LD A
Sbjct: 456 ALPDGLDTVLGEGGARLSGGERQRLALARALLAD-------APILLLDEPTEHLDAETAD 508
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302
++EDL+ +G V++TH
Sbjct: 509 ELLEDLL-----AALSGRT-------VVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-27
Identities = 80/275 (29%), Positives = 134/275 (48%), Gaps = 37/275 (13%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--L 141
I RN+ +G+ H L+ ++ I + IGPSG GKST+L+ + L
Sbjct: 6 MVATAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYEL 65
Query: 142 APDK---GEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGF--LLYE 194
P++ GE+ + G L ++I+ LR +G+VFQ F +++ +N+ F L+E
Sbjct: 66 YPEQRAEGEILLDGENI--LTPKQDIALLRAKVGMVFQKPTPF-PMSIYDNIAFGVRLFE 122
Query: 195 NSKMRDEQISELVKENLAAVGLKG-VEDRLPSE---LSGGMKKRVALARSIIFDNTKESV 250
K+ ++ E V+ L L V+D+L LSGG ++R+ +AR I ++
Sbjct: 123 --KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI-------AI 173
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310
PEVLL DEP + LDPI++ +E+LI + + + V+VTH R
Sbjct: 174 RPEVLLLDEPCSALDPISTGRIEELITELKQD-----------YTVVIVTHNMQQAARCS 222
Query: 311 DRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASG 344
D F+Y G+++ G T FT + + + +G
Sbjct: 223 DYTAFMYLGELIEFGNTDTIFTKPAKKQTEDYITG 257
|
Length = 260 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-27
Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 15/170 (8%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
++Y +G K L ++ + GE + ++GPSG GK+T+L +IAG + G + + G+
Sbjct: 6 HLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV 65
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
G G G+VFQ+ L V++NV F L + + + Q E+ + L VG
Sbjct: 66 EG-------PGAERGVVFQNEGLLPWRNVQDNVAFGL-QLAGVEKMQRLEIAHQMLKKVG 117
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
L+G E R +LSGG ++RV +AR++ + P++LL DEP LD
Sbjct: 118 LEGAEKRYIWQLSGGQRQRVGIARAL-------AANPQLLLLDEPFGALD 160
|
Length = 255 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 4e-27
Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 22/226 (9%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+ +L VS ++ GE V ++G SG GKST+ +++ GL +P +G V RG A L +
Sbjct: 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKL-NR 81
Query: 162 EEISGLR--IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217
+ R I +VFQ + A+ TVRE + L + + E L AV L
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 218 -GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
V D+ P +LSGG +RV LAR++ +VEP++L+ DE + LD + V L+
Sbjct: 142 DSVLDKRPPQLSGGQLQRVCLARAL-------AVEPKLLILDEAVSNLDLVLQAGVIRLL 194
Query: 277 RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
+ + ++ G A + +TH + R R++ + G+IV
Sbjct: 195 KKLQQQF--GTA-------CLFITHDLRLVERFCQRVMVMDNGQIV 231
|
Length = 268 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 6e-27
Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 35/247 (14%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+ R++ K + +L+G+ F + GE ++G +G GKST++KIIAG++ PD G + I
Sbjct: 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI 70
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE- 209
G A L + + L I LV Q LF +L+V+EN+ F L + +++ +L+
Sbjct: 71 GGNPCARL-TPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL-PKRQASMQKMKQLLAAL 128
Query: 210 ----NL-AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
+L ++ G V DR E+ G L R + +L+ DEPTA L
Sbjct: 129 GCQLDLDSSAGSLEVADRQIVEILRG------LMR-----------DSRILILDEPTASL 171
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
P + + IR + +G V ++H+ IR+ DR+ + +G I
Sbjct: 172 TPAETERLFSRIRELLAQG----------VGIVFISHKLPEIRQLADRISVMRDGTIALS 221
Query: 325 GMTHEFT 331
G T + +
Sbjct: 222 GKTADLS 228
|
Length = 510 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 7e-27
Identities = 77/251 (30%), Positives = 130/251 (51%), Gaps = 45/251 (17%)
Query: 92 IDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
++ RN+ +FG E ++ S ++ G+ V ++G SG+GKSTI K++AGL P GE
Sbjct: 478 VELRNI--TFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
+ G R I E ++ + +V Q LF+ TVR+N+ L++ + + D +
Sbjct: 536 ILFDGIPREE-IPREVLAN-SVAMVDQDIFLFEG-TVRDNLT--LWDPT-IPDADLVRAC 589
Query: 208 KENLAAV-----GLKGVEDRLPSE----LSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
K+ AA+ G D +E LSGG ++R+ +AR+++ P +L+ D
Sbjct: 590 KD--AAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV-------RNPSILILD 640
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
E T+ LDP +++D +R ++G + ++V H+ STIR D +I L
Sbjct: 641 EATSALDPETEKIIDDNLR---RRG----------CTCIIVAHRLSTIRDC-DEIIVLER 686
Query: 319 GKIVWQGMTHE 329
GK+V +G THE
Sbjct: 687 GKVVQRG-THE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 8e-27
Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 46/283 (16%)
Query: 90 VLIDCRNVYKSFGE------KHILRGVS------------------FKIRHGEAVGIIGP 125
+ ++ +N+YK FGE K+I +G+S I GE I+G
Sbjct: 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGL 62
Query: 126 SGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSL 182
SG+GKST+++++ L+ P +G+V I G A ISD E+ +R I +VFQS AL +
Sbjct: 63 SGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAK-ISDAELREVRRKKIAMVFQSFALMPHM 121
Query: 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242
TV +N F + E + + E+ E + L VGL+ P ELSGGM++RV LAR++
Sbjct: 122 TVLDNTAFGM-ELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARAL- 179
Query: 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302
++ P++LL DE + LDP+ T ++D + + K + + V ++H
Sbjct: 180 ------AINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQR---------TIVFISHD 224
Query: 303 HSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASG 344
R DR+ + G++V G E + +N V+ F G
Sbjct: 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRG 267
|
Length = 400 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 9e-27
Identities = 77/222 (34%), Positives = 112/222 (50%), Gaps = 28/222 (12%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
IL GV ++ GE + +IG SG+GKST+L I+AGL GEV + G+ + +E +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQM-DEEARA 83
Query: 166 GLR---IGLVFQSAALFDSLTVRENV---GFLLYENSKMRDEQISELVKENLAAVGLKGV 219
LR +G VFQS L +L ENV L E+S+ L L +GL
Sbjct: 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKAL----LEQLGLGKR 139
Query: 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV 279
D LP++LSGG ++RVALAR+ + P+VL DEPT LD + DL+ S+
Sbjct: 140 LDHLPAQLSGGEQQRVALARAF-------NGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192
Query: 280 HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
+++ L ++VTH R DR + L G++
Sbjct: 193 NREHGTTL---------ILVTHDLQLAARC-DRRLRLVNGQL 224
|
Length = 228 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 9e-27
Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 60/236 (25%)
Query: 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+ NV S+ E + +L+ +S +++ GE + ++G SG+GKST+L+++ G L P +GE+
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
+ G + L ++ +S L I ++ Q LFD+ T+R N+G
Sbjct: 61 LDGVPVSDL--EKALSSL-ISVLNQRPYLFDT-TLRNNLG-------------------- 96
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
SGG ++R+ALAR ++ D P VLL DEPT GLDPI
Sbjct: 97 ---------------RRFSGGERQRLALARILLQD------APIVLL-DEPTVGLDPITE 134
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ LI V K + + +TH + I +D+++FL GKI+ QG
Sbjct: 135 RQLLSLIFEVLKD-----------KTLIWITHHLTGIEH-MDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 78/253 (30%), Positives = 125/253 (49%), Gaps = 47/253 (18%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
P G + ++ +K IL+G+SF ++ GEA+GIIGPSG+GKST+ +++ G+ P
Sbjct: 329 PAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP 388
Query: 144 DKGEVYIRGRKRAGLIS-DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
G V + G A L D E G IG + Q LFD T+ EN+ ++ +E
Sbjct: 389 TSGSVRLDG---ADLRQWDREQLGRHIGYLPQDVELFDG-TIAENI-------ARFGEEA 437
Query: 203 ISELVKENLAAVGLKGVED---RLP-----------SELSGGMKKRVALARSIIFDNTKE 248
E V + A L GV + RLP + LSGG ++R+ALAR++ D
Sbjct: 438 DPEKV---IEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD---- 490
Query: 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308
P +++ DEP + LD + I + +G + VV+ H+ S +
Sbjct: 491 ---PFLVVLDEPNSNLDSEGEAALAAAILAAKARG----------GTVVVIAHRPSAL-A 536
Query: 309 AVDRLIFLYEGKI 321
+VD+++ L +G+I
Sbjct: 537 SVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-26
Identities = 74/246 (30%), Positives = 128/246 (52%), Gaps = 32/246 (13%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APD---KGEVYIRGRKR 155
+G+ H L+ ++ I E IIGPSG GKST +K + ++ P+ GE+ G
Sbjct: 22 YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81
Query: 156 AGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA 213
L ++ LR IG+VFQ F ++ +NV + + +++ E+V+++L
Sbjct: 82 --LKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD 138
Query: 214 VGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
V L V+DRL ++ LSGG ++R+ +AR++ + P+VLL DEPT+ LDP+++
Sbjct: 139 VALWDEVKDRLHTQALSLSGGQQQRLCIARAL-------ATNPDVLLMDEPTSALDPVST 191
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+E+LI + +K + V+VTH R D+ F Y G++V T++
Sbjct: 192 RKIEELILKLKEK-----------YTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNK 240
Query: 330 FTSSSN 335
S+ +
Sbjct: 241 MFSNPD 246
|
Length = 259 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-26
Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIR 151
+NV +L V+F I GE V ++GPSG GKST+L + G LA GE+++
Sbjct: 6 KNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLN 65
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
++ L + + +IG++FQ A LF L+V +N+ F L + ++ L
Sbjct: 66 EQRLDMLPAAQR----QIGILFQDALLFPHLSVGQNLLFAL--PATLKGNARRNAANAAL 119
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
GL G + P+ LSGG + RVAL R+++ +P+ LL DEP + LD
Sbjct: 120 ERSGLDGAFHQDPATLSGGQRARVALLRALL-------AQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-26
Identities = 83/267 (31%), Positives = 120/267 (44%), Gaps = 66/267 (24%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+ R + K +G + R VSF + GE +GI+G SG+GK+T+L ++ LAPD GEV+
Sbjct: 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY 65
Query: 151 RGRKR-----AGLISDEEISGLRI--GLVFQSAA--LFDSLTVRENVGFLLYENSKMRDE 201
R R L E LR G V Q L ++ N+G
Sbjct: 66 RMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIG------------ 113
Query: 202 QISELVKENLAAVG--------------LKGVE------DRLPSELSGGMKKRVALARSI 241
E L AVG L+ VE D LP+ SGGM++R+ +AR++
Sbjct: 114 -------ERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNL 166
Query: 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS-VHKKGENGLANPGNIASYVVVT 300
+ P ++ DEPT GLD + DL+R V E GLA V+VT
Sbjct: 167 V-------THPRLVFMDEPTGGLDVSVQARLLDLLRGLVR---ELGLA-------VVIVT 209
Query: 301 HQHSTIRRAVDRLIFLYEGKIVWQGMT 327
H + R RL+ + +G++V G+T
Sbjct: 210 HDLAVARLLAHRLLVMKQGRVVESGLT 236
|
Length = 258 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 83/275 (30%), Positives = 120/275 (43%), Gaps = 69/275 (25%)
Query: 88 GDVLIDCRNVYKSF-----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
G+ +I RNV K + G + VS +++ GE GI+G SG GK+T+ KIIAG+L
Sbjct: 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE 335
Query: 143 PDKGEVYIR--------------GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV 188
P GEV +R GR RA IG++ Q L+ TV +N+
Sbjct: 336 PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRY---------IGILHQEYDLYPHRTVLDNL 386
Query: 189 GFLLYENSKMRDEQIS-ELVKE--------NLAAVGL-----KGVEDRLPSELSGGMKKR 234
E I EL E L VG + + D+ P ELS G + R
Sbjct: 387 -----------TEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435
Query: 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294
VALA+ +I EP +++ DEPT +DPI V I ++ E
Sbjct: 436 VALAQVLI-------KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ--------- 479
Query: 295 SYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
++++V+H + DR + +GKIV G E
Sbjct: 480 TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 3e-26
Identities = 76/253 (30%), Positives = 125/253 (49%), Gaps = 29/253 (11%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GE 147
+I + K+F + L V I HGE V ++GPSG+GKST+L+ ++GL+ DK
Sbjct: 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSH 63
Query: 148 VYIRGR--KRAG-LISDEEISGLRIGLVFQSAALFDSLTVRENV-----GFLLYENSKMR 199
+ + GR +R G L D S G +FQ L + L+V ENV G + +
Sbjct: 64 IELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFS 123
Query: 200 --DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
+ + + L VG+ + S LSGG ++RVA+AR+++ + +V+L
Sbjct: 124 WFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALM-------QQAKVILA 176
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317
DEP A LDP ++ +V D +R + N + + VV HQ R +R++ L
Sbjct: 177 DEPIASLDPESARIVMDTLRDI---------NQNDGITVVVTLHQVDYALRYCERIVALR 227
Query: 318 EGKIVWQGMTHEF 330
+G + + G + +F
Sbjct: 228 QGHVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 4e-26
Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 21/220 (9%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L ++ I+ GE +GIIG +G+GKST+ + GLL P KG+V + G + I
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 167 LRIGLVFQSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPS 225
L +G+VFQ+ F TV E++ F EN + +I + V LA +GL+ R P
Sbjct: 78 L-VGIVFQNPETQFVGRTVEEDLAFGP-ENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK 135
Query: 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGEN 285
LSGG + VALA + ++EPE L++DE T+ LDP + V + I+ +H+KG+
Sbjct: 136 TLSGGQGQCVALAGIL-------TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK- 187
Query: 286 GLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ V +TH + A DR+I + GKIV +G
Sbjct: 188 ---------TIVYITHNLEELHDA-DRIIVMDRGKIVLEG 217
|
Length = 274 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 4e-26
Identities = 79/249 (31%), Positives = 116/249 (46%), Gaps = 30/249 (12%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+ + KS+G R VSF + GE +GI+G SG+GKST+L +AG LAPD G
Sbjct: 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62
Query: 151 RGRKRAGL----ISDEEISGL---RIGLVFQSAALFDSLTVR----ENVGFLLYENSKMR 199
R A L +S+ E L G V Q+ D L +R N+G L
Sbjct: 63 IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR--DGLRMRVSAGANIGERLMAIGARH 120
Query: 200 DEQISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
I ++ L V + D LP SGGM++R+ +AR+++ P ++ D
Sbjct: 121 YGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLV-------TRPRLVFMD 173
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
EPT GLD + DL+R GL +A ++VTH R RL+ + +
Sbjct: 174 EPTGGLDVSVQARLLDLLR--------GLVRDLGLAV-IIVTHDLGVARLLAQRLLVMQQ 224
Query: 319 GKIVWQGMT 327
G++V G+T
Sbjct: 225 GRVVESGLT 233
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 7e-26
Identities = 69/254 (27%), Positives = 124/254 (48%), Gaps = 46/254 (18%)
Query: 91 LIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
++ RNV + ++ L +S I GE V ++G SG+GKST++ +I PD G++
Sbjct: 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+ G ++D ++ LR + LV Q LF+ T+ N+ + ++
Sbjct: 390 LLDGHD----LADYTLASLRRQVALVSQDVVLFND-TIANNIAY------GRTEQADRAE 438
Query: 207 VKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVL 255
++ LAA + D+LP LSGG ++R+A+AR+++ D +L
Sbjct: 439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD-------APIL 491
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
+ DE T+ LD + +V+ + + +G L V+ H+ STI +A DR++
Sbjct: 492 ILDEATSALDNESERLVQAALERL-MQGRTTL----------VIAHRLSTIEKA-DRIVV 539
Query: 316 LYEGKIVWQGMTHE 329
+ +G+IV +G TH
Sbjct: 540 MDDGRIVERG-THN 552
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 9e-26
Identities = 74/271 (27%), Positives = 122/271 (45%), Gaps = 37/271 (13%)
Query: 89 DVLIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144
L+ RN+ +F G ++G+SF I GE + ++G SG+GKS I GLL
Sbjct: 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSP 63
Query: 145 -----KGEVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSL----TVRENVGFLLY 193
G + G + + G +IG++FQ SL T+ + + +L
Sbjct: 64 AAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEP--MTSLNPLHTIGKQLAEVLR 121
Query: 194 ENSKMRDEQISELVKENLAAVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESV 250
+ + E L VG+ E RL P ELSGG ++RV +A ++
Sbjct: 122 LHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA-------N 174
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310
EP++L+ DEPT LD + DL++ + + E G+A + +TH +R+
Sbjct: 175 EPDLLIADEPTTALDVTVQAQILDLLKEL--QAELGMA-------ILFITHDLGIVRKFA 225
Query: 311 DRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQ 340
DR+ + G+IV G T F + +P ++
Sbjct: 226 DRVYVMQHGEIVETGTTETLFAAPQHPYTRK 256
|
Length = 534 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-25
Identities = 80/235 (34%), Positives = 116/235 (49%), Gaps = 31/235 (13%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK-------IIAGLLAPD 144
ID +++ +G H + V+ I IGPSG GKST+L+ +I G A
Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPG--ARV 62
Query: 145 KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
+GEV + G G D IG+VFQ F ++++R+NV L N + +
Sbjct: 63 EGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLD 122
Query: 205 ELVKENLAAVGL-KGVEDRLP---SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
ELV+++L L V+DRL LSGG ++R+ +AR+I +VEP+VLL DEP
Sbjct: 123 ELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI-------AVEPDVLLMDEP 175
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
+ LDPI++ +EDLI N L I V+VTH R D+ F
Sbjct: 176 CSALDPISTLAIEDLI--------NELKQDYTI---VIVTHNMQQAARVSDQTAF 219
|
Length = 258 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 79/270 (29%), Positives = 128/270 (47%), Gaps = 65/270 (24%)
Query: 83 EPEDDGD-----VL---IDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKS 131
PE D L I+ V Y+ G IL VS +I GE V I+GPSG+GKS
Sbjct: 435 LPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGPL-ILDDVSLQIEPGEFVAIVGPSGSGKS 493
Query: 132 TILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVG 189
T+L+++ G P+ G V+ G+ AGL ++ +R +G+V Q+ L S ++ EN+
Sbjct: 494 TLLRLLLGFETPESGSVFYDGQDLAGL----DVQAVRRQLGVVLQNGRLM-SGSIFENI- 547
Query: 190 FLLYENSKMRDEQISELVKENLAAVGLKGVED---RLP-------SE----LSGGMKKRV 235
++ + E A + G+ + +P SE LSGG ++R+
Sbjct: 548 --------AGGAPLT--LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295
+AR+++ +P +LL+DE T+ LD +V + + L +
Sbjct: 598 LIARALV-------RKPRILLFDEATSALDNRTQAIVSESL--------ERLK-----VT 637
Query: 296 YVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+V+ H+ STIR A DR+ L G++V QG
Sbjct: 638 RIVIAHRLSTIRNA-DRIYVLDAGRVVQQG 666
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 45/251 (17%)
Query: 86 DDGDVLIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
D ++ +NV Y + + +L+ VSF + GE ++GPSG+GKST++ ++
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 143 PDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMR- 199
P G+V + G+ IS E L + LV Q LF + ++++N+ + L S
Sbjct: 66 PQGGQVLLDGKP----ISQYEHKYLHSKVSLVGQEPVLF-ARSLQDNIAYGLQSCSFECV 120
Query: 200 ---------DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250
ISEL VG KG S+LSGG K+RVA+AR++I +
Sbjct: 121 KEAAQKAHAHSFISELASGYDTEVGEKG------SQLSGGQKQRVAIARALIRN------ 168
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310
P+VL+ DE T+ LD + V+ + ++ + +V+ H+ ST+ RA
Sbjct: 169 -PQVLILDEATSALDAESEQQVQQALYDWPER-----------RTVLVIAHRLSTVERA- 215
Query: 311 DRLIFLYEGKI 321
D+++ L G+I
Sbjct: 216 DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-25
Identities = 81/264 (30%), Positives = 119/264 (45%), Gaps = 60/264 (22%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+ + K +G R VSF + GE +GI+G SG+GK+T+LK I+G L PD G V
Sbjct: 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65
Query: 151 RGRKR-----AGLISDEEISGLRI--GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
R R + E LR G V Q+ D L ++ + G N
Sbjct: 66 RMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR--DGLRMQVSAG----GN-------- 111
Query: 204 SELVKENLAAVG--------------LKGVE------DRLPSELSGGMKKRVALARSIIF 243
+ E L A+G L+ VE D LP SGGM++R+ +AR+++
Sbjct: 112 ---IGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLV- 167
Query: 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303
P ++ DEPT GLD + DL+R GL +A V+VTH
Sbjct: 168 ------TRPRLVFMDEPTGGLDVSVQARLLDLLR--------GLVRELGLAV-VIVTHDL 212
Query: 304 STIRRAVDRLIFLYEGKIVWQGMT 327
+ R DRL+ + +G++V G+T
Sbjct: 213 AVARLLADRLMVMKQGQVVESGLT 236
|
Length = 258 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 77/246 (31%), Positives = 114/246 (46%), Gaps = 28/246 (11%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+ L+ +NV G+ IL +SF +R GE I GPSG GKST+LKI+A L++P G
Sbjct: 3 ENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG 62
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ--IS 204
+ G + L EI ++ Q+ LF TV +N+ F ++ D +
Sbjct: 63 TLLFEGEDISTL--KPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLD 119
Query: 205 ELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+L + L L K + ELSGG K+R++L R++ F P+VLL DE T+
Sbjct: 120 DLERFALPDTILTKNIA-----ELSGGEKQRISLIRNLQF-------MPKVLLLDEITSA 167
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323
LD V ++I + NIA + VTH I A D++I L
Sbjct: 168 LDESNKHNVNEII--------HRYVREQNIAV-LWVTHDKDEINHA-DKVITLQPHAGEM 217
Query: 324 QGMTHE 329
Q +E
Sbjct: 218 QEARYE 223
|
Length = 225 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 64/172 (37%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Query: 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR---GRKRAGLISDEEIS 165
S I GE ++G SG+GKST+L+ + GL +G V ++ G +
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 166 GLR---IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR 222
LR + +VFQ AL TV ENV F L E M + + V E L VGL DR
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENVAFGL-EMQGMPKAERRKRVDEQLELVGLAQWADR 160
Query: 223 LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
P ELSGGM++RV LAR+ + E +LL DEP + LDP+ T ++D
Sbjct: 161 KPGELSGGMQQRVGLARAF-------ATEAPILLMDEPFSALDPLIRTQLQD 205
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-25
Identities = 87/290 (30%), Positives = 133/290 (45%), Gaps = 56/290 (19%)
Query: 85 EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI-------- 136
E DGD + ++ +G+ H L+GVS I +IGPSG GKST L+
Sbjct: 39 EFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRI 98
Query: 137 ----IAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV---- 188
I G + D ++Y G L R+G+VFQS F ++REN+
Sbjct: 99 KAARIDGSVELDGQDIYQDGVNLVELRK-------RVGMVFQSPNPFPK-SIRENISYGP 150
Query: 189 --------GFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSE---LSGGMKKRVA 236
G L + + ELV+ +L L V DRL LSGG ++R+
Sbjct: 151 RKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLC 210
Query: 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY 296
+AR + +V+PEV+L DEP + LDPIA++ +EDLI + ++ +
Sbjct: 211 IARCL-------AVDPEVILMDEPASALDPIATSKIEDLIEELAEE-----------YTV 252
Query: 297 VVVTHQHSTIRRAVDRL-IFLYEGKIVWQGMTHE-FTSSSNPIVQQFASG 344
VVVTH R D+ +FL G++V T + F + + V+ + +G
Sbjct: 253 VVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYITG 302
|
Length = 305 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-25
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 17/164 (10%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+ + G+SF + GEA+ + GP+G+GK+T+L+I+AGL P G V + G
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED 221
L +G + + +L+V EN+ F ++S DEQ+ +E LA VGL G ED
Sbjct: 71 IARGLLYLG---HAPGIKTTLSVLENLRFWHADHS---DEQV----EEALARVGLNGFED 120
Query: 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
R ++LS G ++RVALAR ++ + + DEPT LD
Sbjct: 121 RPVAQLSAGQQRRVALARLLL-------SGRPLWILDEPTTALD 157
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-25
Identities = 73/270 (27%), Positives = 133/270 (49%), Gaps = 37/270 (13%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD-- 144
+ ++ +N+ +GEK L ++ I + +IGPSG GKST L+ + + L +
Sbjct: 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 145 -KGEVYIRGRKRAGLISDEEISGL----RIGLVFQSAALFDSLTVRENVGFLLYENSKMR 199
+GEV + G+ I D+++ + R+G+VFQ F +++ +NV + +
Sbjct: 62 IEGEVLLDGKN----IYDKDVDVVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKD 116
Query: 200 DEQISELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVL 255
+++ ++V+ L L V+D L +LSGG ++R+ +AR+I +V+P+V+
Sbjct: 117 KKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI-------AVKPDVI 169
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
L DEPT+ LDPI++ +EDL+ + K+ + V+VTH R D F
Sbjct: 170 LMDEPTSALDPISTLKIEDLMVELKKE-----------YTIVIVTHNMQQASRVSDYTAF 218
Query: 316 LYEGKIVWQGMTHE-FTSSSNPIVQQFASG 344
G ++ T + F + + SG
Sbjct: 219 FLMGDLIEFNKTEKIFLEPQKKETEDYISG 248
|
Length = 251 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 5e-25
Identities = 79/224 (35%), Positives = 108/224 (48%), Gaps = 43/224 (19%)
Query: 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL-------RIGLVFQ 174
I G SG GK++++ I+GL P KG + + GR ++ D E G+ RIG VFQ
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGR----VLFDAE-KGICLPPEKRRIGYVFQ 83
Query: 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE---DRLPSELSGGM 231
A LF VR N L Y +K Q ++V L G+E DR P LSGG
Sbjct: 84 DARLFPHYKVRGN---LRYGMAKSMVAQFDKIVA-------LLGIEPLLDRYPGSLSGGE 133
Query: 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD-PIASTVVEDLIRSVHKKGENGLANP 290
K+RVA+ R+++ PE+LL DEP A LD P ++ L R LA
Sbjct: 134 KQRVAIGRALL-------TAPELLLMDEPLASLDLPRKRELLPYLER---------LARE 177
Query: 291 GNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSS 334
NI + V+H I R DR++ L +GK+ G E +SS
Sbjct: 178 INI-PILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
|
Length = 352 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 9e-25
Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 32/231 (13%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLI 159
+K L +SF I G +IG +G+GKSTI K+I GLL PD ++ + G +
Sbjct: 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT----L 74
Query: 160 SDEEISGLR--IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 216
+ + + +R +G+VFQ+ F TV ++V F L EN + ++ ++V++ LA VG+
Sbjct: 75 TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGL-ENRAVPRPEMIKIVRDVLADVGM 133
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
D P+ LSGG K+RVA+A I+ +VEP++++ DE T+ LDP + LI
Sbjct: 134 LDYIDSEPANLSGGQKQRVAIA-GIL------AVEPKIIILDESTSMLDPAGKEQILKLI 186
Query: 277 RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV--DRLIFLYEGKIVWQG 325
R + K +N L + + +TH I A D+++ L +GK++ QG
Sbjct: 187 RKLKK--KNNL-------TVISITHD---IDEANMADQVLVLDDGKLLAQG 225
|
Length = 282 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 9e-25
Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 41/234 (17%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
E L+G+SF I GE VG IGP+G GK+T LKI++GLL P GEV + AGL+ +
Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV-----AGLVPWK 87
Query: 163 EISGL--RIGLVF-QSAALFDSLTVRENVGFLL--------YENSKMRDEQISELVKENL 211
RIG+VF Q L+ L V + F L K R +++SEL+
Sbjct: 88 RRKKFLRRIGVVFGQKTQLWWDLPVID--SFYLLAAIYDLPPARFKKRLDELSELLD--- 142
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
L+ + D +LS G + R +A +++ EPE+L DEPT GLD +A
Sbjct: 143 ----LEELLDTPVRQLSLGQRMRAEIAAALLH-------EPEILFLDEPTIGLDVVAQEN 191
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ + ++ +++ + ++ +H I R++ + +G++++ G
Sbjct: 192 IRNFLKEYNRERG---------TTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-24
Identities = 75/264 (28%), Positives = 129/264 (48%), Gaps = 39/264 (14%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL-----LAPDKGEVYI 150
+VY +G+K ++G+ + + +IGPSG+GKST L+ + + +A G++
Sbjct: 27 HVY--YGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY 84
Query: 151 RGRKRAGLISDEEIS--GLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
RG I+ +EI+ +R IG+VFQ F + ++ EN+ F L + + E+
Sbjct: 85 RGID----INRKEINVYEMRKHIGMVFQRPNPF-AKSIYENITFALERAGVKDKKVLDEI 139
Query: 207 VKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
V+ +L L V+D L LSGG ++R+ +AR+I +V+P++LL DEP +
Sbjct: 140 VETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI-------AVKPDILLMDEPAS 192
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
LDPI++ +E+ + + K + ++VTH RA D F Y G ++
Sbjct: 193 ALDPISTMQLEETMFELKKN-----------YTIIIVTHNMQQAARASDYTAFFYLGDLI 241
Query: 323 WQGMTHE-FTSSSNPIVQQFASGS 345
T FT+ + SG
Sbjct: 242 EYDKTRNIFTNPKLQSTNDYVSGH 265
|
Length = 267 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-24
Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 38/256 (14%)
Query: 72 SSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKS 131
S K ENV+ ++ P + EK L +SF++ G V ++G +G+GKS
Sbjct: 2 SIKFENVDYIYSPG--------------TPMEKKGLDNISFELEEGSFVALVGHTGSGKS 47
Query: 132 TILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQ--SAALFDSLTVREN 187
T+++ LL P G + I G ++ + LR + LVFQ A LF++ TV ++
Sbjct: 48 TLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN-TVLKD 106
Query: 188 VGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNT 246
V F +N +++ E + L VGL + + P ELSGG +RVA+A + +
Sbjct: 107 VEFGP-KNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAY--- 162
Query: 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306
EPE+L DEP AGLDP + L + K G + ++VTH +
Sbjct: 163 ----EPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGH----------TVILVTHNMDDV 208
Query: 307 RRAVDRLIFLYEGKIV 322
D ++ L GK++
Sbjct: 209 AEYADDVLVLEHGKLI 224
|
Length = 287 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-24
Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 33/256 (12%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KGEVYIRGRKR 155
+GE ++ V+ I IIGPSG GKST L+ I + L P G + G
Sbjct: 49 YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI 108
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
G +DE + +IG+VFQ F ++ +N+ + + +Q+ E+V+++L
Sbjct: 109 YGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA 167
Query: 216 L-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
L V DRL LSGG ++R+ +AR++ +VEPE+LL DEPT+ LDP A+
Sbjct: 168 LWDEVSDRLDKNALGLSGGQQQRLCVARTL-------AVEPEILLLDEPTSALDPKATAK 220
Query: 272 VEDLIRSVHKKGENGLANPGNIASY--VVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+EDLI+ + SY ++VTH R D +F YEG +V T +
Sbjct: 221 IEDLIQELR-------------GSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267
Query: 330 -FTSSSNPIVQQFASG 344
FT+ + + + + +G
Sbjct: 268 LFTNPKDRMTEDYITG 283
|
Length = 286 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 2e-24
Identities = 80/294 (27%), Positives = 139/294 (47%), Gaps = 47/294 (15%)
Query: 70 NDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTG 129
+ N V+ D +N+ +GE H L+ ++ I E IIGPSG G
Sbjct: 3 ATVVNVQVKNEEKIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCG 62
Query: 130 KSTILKIIAGL--LAPD---KGEVYIRGRKRAGLISDEEIS--GLR--IGLVFQS----- 175
KST +K + + L P G++ R + I D+ S LR +G+VFQ
Sbjct: 63 KSTYIKTLNRMVELVPSVKTTGKILYRDQN----IFDKSYSVEELRTNVGMVFQKPNPFP 118
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENL-AAVGLKGVEDRLPSE---LSGGM 231
+++D++T + + ++ K D E+V+++L A ++DRL LSGG
Sbjct: 119 KSIYDNVTYGPKIHGI--KDKKTLD----EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQ 172
Query: 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPG 291
++R+ +AR + ++EP+V+L DEPT+ LDPI++ VE+L++ + K
Sbjct: 173 QQRLCIARCL-------AIEPDVILMDEPTSALDPISTLKVEELVQELKKD--------- 216
Query: 292 NIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASG 344
S ++VTH R D+ F G + T + F++ S+ + + +G
Sbjct: 217 --YSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPSDKRTEDYITG 268
|
Length = 271 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.5 bits (245), Expect = 5e-24
Identities = 71/247 (28%), Positives = 123/247 (49%), Gaps = 34/247 (13%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD- 144
+I +V+ +G+ L+G+ E +IGPSG GKST L+ + + L P
Sbjct: 2 AKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGV 61
Query: 145 --KGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
G V +RG+ +E++ LR +G+VFQ F ++ ENV + L + ++D
Sbjct: 62 TITGNVSLRGQNIYA--PNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGL-RLAGVKD 117
Query: 201 EQI-SELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVL 255
+ + E V+ +L + V+D L LSGG ++RV +AR + +V+P+V+
Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL-------AVKPDVI 170
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
L DEPT+ LDPI+ST +E+++ + + + ++VTH R D+ F
Sbjct: 171 LLDEPTSALDPISSTQIENMLLELRDQ-----------YTIILVTHSMHQASRISDKTAF 219
Query: 316 LYEGKIV 322
G ++
Sbjct: 220 FLTGNLI 226
|
Length = 252 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 73/253 (28%), Positives = 124/253 (49%), Gaps = 48/253 (18%)
Query: 91 LIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
LI+ ++V Y + + +L+G++F + GE V ++GPSG+GKST+ ++ L P G+
Sbjct: 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLL--YENSKMR---- 199
V + G + + L + LV Q LF S +VREN+ + L + ++
Sbjct: 538 VLLDGVP----LVQYDHHYLHRQVALVGQEPVLF-SGSVRENIAYGLTDTPDEEIMAAAK 592
Query: 200 ----DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255
+ I E VG KG S+LSGG K+R+A+AR+++ P VL
Sbjct: 593 AANAHDFIMEFPNGYDTEVGEKG------SQLSGGQKQRIAIARALVRK-------PRVL 639
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
+ DE T+ LD E L++ + + +++ H+ ST+ RA D+++
Sbjct: 640 ILDEATSALD----AECEQLLQESRSRASR---------TVLLIAHRLSTVERA-DQILV 685
Query: 316 LYEGKIVWQGMTH 328
L +G +V G TH
Sbjct: 686 LKKGSVVEMG-TH 697
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 9e-24
Identities = 79/253 (31%), Positives = 129/253 (50%), Gaps = 47/253 (18%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
PE +G + ++ + G+K LRG+SF ++ GEA+ IIGPSG+GKST+ ++I G+ P
Sbjct: 311 PEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP 370
Query: 144 DKGEVYIRGRKRAGLIS-DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
G V + G A L D E G IG + Q LF TV EN+ ++ +
Sbjct: 371 TSGSVRLDG---ADLKQWDRETFGKHIGYLPQDVELFPG-TVAENI-------ARFGENA 419
Query: 203 ISELVKENLAAVGLKGVED---RLP-----------SELSGGMKKRVALARSIIFDNTKE 248
E + + A L GV + RLP + LSGG ++R+ALAR++ D
Sbjct: 420 DPEKI---IEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD---- 472
Query: 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308
P++++ DEP + LD + + I+++ +G + VV+TH+ S +
Sbjct: 473 ---PKLVVLDEPNSNLDEEGEQALANAIKALKARG----------ITVVVITHRPSLL-G 518
Query: 309 AVDRLIFLYEGKI 321
VD+++ L +G+I
Sbjct: 519 CVDKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 47/238 (19%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L ++ I+ GE +GI+GPSG+GKST+ K++ L P G+V + G A I+D
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA--IADPAWL 529
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED---R 222
++G+V Q LF S ++R+N+ N E + + A L G D
Sbjct: 530 RRQMGVVLQENVLF-SRSIRDNIAL---CNPGAPFEHV-------IHAAKLAGAHDFISE 578
Query: 223 LP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
LP + LSGG ++R+A+AR+++ + P +L++DE T+ LD + +
Sbjct: 579 LPQGYNTEVGEKGANLSGGQRQRIAIARALVGN-------PRILIFDEATSALDYESEAL 631
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ +R + + + +++ H+ ST+R DR+I L +G+I G HE
Sbjct: 632 IMRNMREICRG-----------RTVIIIAHRLSTVRAC-DRIIVLEKGQIAESG-RHE 676
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 1e-23
Identities = 76/251 (30%), Positives = 124/251 (49%), Gaps = 29/251 (11%)
Query: 85 EDDGDVLIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141
+D + +I +NV Y+S L+ VSF I G+ I+G +G+GKSTI K++ G+
Sbjct: 1 MEDKNSIIVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59
Query: 142 APDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAA-LFDSLTVRENVGFLLYENSKM 198
GE++ + I+D+ LR IG+VFQ+ F V+ +V F L EN +
Sbjct: 60 KVKSGEIFYNNQ----AITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGL-ENHAV 114
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+++ V E L V + D P+ LSGG K+RVA+A + ++ P V++ D
Sbjct: 115 PYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL-------ALNPSVIILD 167
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
E T+ LDP A ++L+ V K + + + +TH S A D +I + +
Sbjct: 168 EATSMLDPDAR---QNLLDLVRKVKSE------HNITIISITHDLSEAMEA-DHVIVMNK 217
Query: 319 GKIVWQGMTHE 329
G + +G E
Sbjct: 218 GTVYKEGTPTE 228
|
Length = 269 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.7 bits (243), Expect = 1e-23
Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 37/268 (13%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL-----LAPDK 145
+++ +++ +GEK + +S I +IGPSG GKST L+ I + A +
Sbjct: 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80
Query: 146 GEVYIRGRKRAGLISDEEIS--GLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDE 201
GE+ G I D I+ LR IG+VFQ F ++ N+ L + R
Sbjct: 81 GEILYEGLN----ILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKS 135
Query: 202 QISELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
+ E+V+E+L L V+DRL S LSGG ++R+ +AR++ +++P VLL
Sbjct: 136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL-------AMKPAVLLL 188
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317
DEP + LDPI++ +E+LI + ++ S ++VTH R DR F
Sbjct: 189 DEPASALDPISNAKIEELITELKEE-----------YSIIIVTHNMQQALRVSDRTAFFL 237
Query: 318 EGKIVWQGMTHE-FTSSSNPIVQQFASG 344
G +V T + FTS + + +G
Sbjct: 238 NGDLVEYDQTEQIFTSPKQQKTEDYING 265
|
Length = 268 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 1e-23
Identities = 73/241 (30%), Positives = 129/241 (53%), Gaps = 35/241 (14%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL---LAPDKGEVYIRGRKRAG 157
+G+K L ++ +I + +IG SG GKST L+ + +A G V I G+
Sbjct: 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD--- 68
Query: 158 LISDEEISGLR--IGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELVKENLAA 213
+ ++++ LR +G+VFQ +F ++ EN+ + L+ K +DE+ LV + L
Sbjct: 69 -VKNQDVVALRKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEE-EALVVDCLQK 125
Query: 214 VGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
VGL + V+D+L LSGG ++R+ +AR++ +++P++LL DEPT+ LDPI+S
Sbjct: 126 VGLFEEVKDKLKQNALALSGGQQQRLCIARAL-------AIKPKLLLLDEPTSALDPISS 178
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
V+E+L++ + S ++VTH +R D F + G+++ G + E
Sbjct: 179 GVIEELLKELSHN-----------LSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKE 227
Query: 330 F 330
F
Sbjct: 228 F 228
|
Length = 246 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 2e-23
Identities = 62/209 (29%), Positives = 92/209 (44%), Gaps = 40/209 (19%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
E+ + G+SF + GE V I GP+G GK+++L+I+AGL PD GEV +G
Sbjct: 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ--R 69
Query: 162 EEISGLRIGLVFQSAALF--------DSLTVRENVGFLLYENSKMRDEQISELVKENLAA 213
+E + L+ LT EN+ F ++ E + E LA
Sbjct: 70 DE---------YHQDLLYLGHQPGIKTELTALENLRFYQ----RLHGPGDDEALWEALAQ 116
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
VGL G ED +LS G ++RVALAR + + + DEP +D +E
Sbjct: 117 VGLAGFEDVPVRQLSAGQQRRVALARLWL-------TRAPLWILDEPFTAIDKQGVARLE 169
Query: 274 DLIRSVHKKGENGLANPGNIASYVVVTHQ 302
L+ H A G + ++ THQ
Sbjct: 170 ALLAQ-H-------AEQGGMV--ILTTHQ 188
|
Length = 204 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (242), Expect = 2e-23
Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 24/218 (11%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR- 168
+ +++ G +IG +G+GKST+L+ + GLL P +G+V + + +EI +R
Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84
Query: 169 -IGLVFQ--SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLP 224
+G+VFQ + LF+ TV ++V F +N + E+ ++ E L VGL ++ P
Sbjct: 85 KVGVVFQFPESQLFEE-TVLKDVAFGP-QNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP 142
Query: 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
ELSGG +RVA+A + ++EPEVL+ DEPTAGLDP A + L S+H+ G+
Sbjct: 143 FELSGGQMRRVAIAGIL-------AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQ 195
Query: 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
+ V+VTH + D + L +G I+
Sbjct: 196 ----------TVVLVTHLMDDVADYADYVYLLEKGHII 223
|
Length = 288 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 3e-23
Identities = 70/264 (26%), Positives = 118/264 (44%), Gaps = 41/264 (15%)
Query: 88 GDVLIDCRNVYKSFGEKH-----ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
D+++ +N+Y F EK L +S+ + IIG SG+GKST++ GL+
Sbjct: 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77
Query: 143 PDKGEVYIRGRKRAGLISDEEISGL--------------RIGLVFQ--SAALFDSLTVRE 186
G + + ++ E+ R+ +VFQ LF T+ +
Sbjct: 78 SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEK 136
Query: 187 NVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDN 245
++ F ++ + +L K L +GL +R P LSGG K+RVA+A I+
Sbjct: 137 DIMFGPV-ALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIA-GIL--- 191
Query: 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305
+++PE+L++DEPTAGLDP + LI + + V+TH
Sbjct: 192 ---AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNK----------TVFVITHTMEH 238
Query: 306 IRRAVDRLIFLYEGKIVWQGMTHE 329
+ D +I + +GKI+ G +E
Sbjct: 239 VLEVADEVIVMDKGKILKTGTPYE 262
|
Length = 320 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 3e-23
Identities = 75/235 (31%), Positives = 116/235 (49%), Gaps = 22/235 (9%)
Query: 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+I +V K++ G + L+GV+F +R GE + G SG GKST+LK+I G+ P G+++
Sbjct: 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
G L + E+ LR IG++FQ L TV +NV L + + I V
Sbjct: 61 FSGHDITRL-KNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII-AGASGDDIRRRV 118
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
L VGL P +LSGG ++RV +AR+++ +P VLL DEPT LD
Sbjct: 119 SAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVV-------NKPAVLLADEPTGNLDDA 171
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
S E ++R + G+ + ++ TH I R R++ L +G +
Sbjct: 172 LS---EGILRLFEEFNRVGV-------TVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (238), Expect = 7e-23
Identities = 77/245 (31%), Positives = 128/245 (52%), Gaps = 25/245 (10%)
Query: 98 YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157
Y+ + + L GVSF I GE V IIG +G+GKST ++I GL +G+V I G
Sbjct: 14 YEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGEL--- 70
Query: 158 LISDEEISGLR--IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
++ E + LR IG+VFQ+ F TV ++V F + EN + E++ + V E L AV
Sbjct: 71 -LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM-ENQGIPREEMIKRVDEALLAV 128
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
+ + R P+ LSGG K+RVA+A I ++ PE+++ DE T+ LDP +
Sbjct: 129 NMLDFKTREPARLSGGQKQRVAVAGII-------ALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSS 334
+I + +K + + + +TH + DR++ + G+I+ + E ++S
Sbjct: 182 VIHEIKEKYQ---------LTVLSITHDLDEAASS-DRILVMKAGEIIKEAAPSELFATS 231
Query: 335 NPIVQ 339
+V+
Sbjct: 232 EDMVE 236
|
Length = 277 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 9e-23
Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 35/267 (13%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD------ 144
+I ++V+ S+G L G+S E +IGPSG GKST L+ + + D
Sbjct: 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKI 62
Query: 145 KGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLL----YENSKM 198
GE+ G+ G S ++ LR +G+VFQ F +V +NV + L ++ ++
Sbjct: 63 TGEIKFEGQNIYG--SKMDLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKEL 119
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
D+++ E +K+ K DR SGG ++R+ +AR++ +V P+V+L D
Sbjct: 120 IDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL-------AVRPKVVLLD 172
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
EPT+ LDPI+S+ +E+ + + + ++++VTH R D+ FL
Sbjct: 173 EPTSALDPISSSEIEETLMELKHQ-----------YTFIMVTHNLQQAGRISDQTAFLMN 221
Query: 319 GKIVWQGMTHE-FTSSSNPIVQQFASG 344
G ++ G T E F + I + +G
Sbjct: 222 GDLIEAGPTEEMFIAPKKQITSDYLNG 248
|
Length = 251 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 9e-23
Identities = 83/278 (29%), Positives = 125/278 (44%), Gaps = 43/278 (15%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK-------IIAG 139
+ +++DC+ +G +R IR E G IGPSG GKST+L+ ++ G
Sbjct: 4 EAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKG 63
Query: 140 LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR 199
+G V+ G+ G D + IG+VFQ F S+++ +NV F L N
Sbjct: 64 FRF--EGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKG 120
Query: 200 DEQISELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVL 255
D + + VK L L V+D+L LSGG ++R+ +AR+I + EPEVL
Sbjct: 121 D--LGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI-------ATEPEVL 171
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
L DEP + LDPIA+ VE+L+ + K + +VTH R D F
Sbjct: 172 LLDEPCSALDPIATRRVEELMVELKKD-----------YTIALVTHNMQQAIRVADTTAF 220
Query: 316 LY--------EGKIVWQGMTHE-FTSSSNPIVQQFASG 344
G +V G T + F + + + SG
Sbjct: 221 FSVDISQGTRTGYLVEMGPTAQIFQNPREQLTSDYISG 258
|
Length = 261 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 1e-22
Identities = 74/232 (31%), Positives = 107/232 (46%), Gaps = 28/232 (12%)
Query: 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159
S G + I+ GV G G++GP+G+GKST+L+++AG L PD G V + G GL
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 160 SDEEISGLRIGLVFQSAALFDSLTVRENVGF------LLYENSKMRDEQISELVKENLAA 213
R+ LV Q + LTVR+ V L+ D + +V LA
Sbjct: 70 RRAR--ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHD---AAVVDRALAR 124
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
L + DR S LSGG ++RV +AR++ + EP++LL DEPT LD A
Sbjct: 125 TELSHLADRDMSTLSGGERQRVHVARAL-------AQEPKLLLLDEPTNHLDVRAQLETL 177
Query: 274 DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
L+R LA G + V H + D ++ L G++V G
Sbjct: 178 ALVRE--------LAATG--VTVVAALHDLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 91.7 bits (229), Expect = 1e-22
Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 85/229 (37%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I+ N+ K++G K +L+ +S I G+ +G++G +G GKST+LK+IAG L PD+G V
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV--- 57
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
S ++IG EQ+S
Sbjct: 58 ----------TWGSTVKIGYF----------------------------EQLS------- 72
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
GG K R+ALA+ ++ P +LL DEPT LD +
Sbjct: 73 -----------------GGEKMRLALAKLLL-------ENPNLLLLDEPTNHLDLESIEA 108
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
+E+ ++ PG + ++V+H + + ++I L +GK
Sbjct: 109 LEEALKEY----------PGTV---ILVSHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 2e-22
Identities = 64/210 (30%), Positives = 95/210 (45%), Gaps = 28/210 (13%)
Query: 91 LIDCRNVYKSFG-------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
L++ ++ K+F +L+ VS + GE V + GPSG GKST+LK + P
Sbjct: 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP 60
Query: 144 DKGEVYIRGR-KRAGL--ISDEEISGLR---IGLVFQSAALFDSLTVRENVGFLLYENSK 197
D G + +R L S E+ +R IG V Q + ++ E V L E
Sbjct: 61 DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG- 119
Query: 198 MRDEQISELVKENLAAVGLKGVEDRL----PSELSGGMKKRVALARSIIFDNTKESVEPE 253
+ E +E LA + + +RL P+ SGG ++RV +AR I +
Sbjct: 120 VPREAARARARELLARL---NIPERLWHLPPATFSGGEQQRVNIARGFI-------ADYP 169
Query: 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
+LL DEPTA LD VV +LI +G
Sbjct: 170 ILLLDEPTASLDAANRQVVVELIAEAKARG 199
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 2e-22
Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 32/246 (13%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ N+ +G K IL +S + G+ +IGP+G GKST+LK A LL P G V++
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF------LLYENSKMRDEQISE 205
+ + L S +++ R+ L+ Q + +TVRE V + L+ D
Sbjct: 63 DKPISML-SSRQLAR-RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA--- 117
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V + + + + DR ++LSGG ++R LA + D V+L DEPT LD
Sbjct: 118 RVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDT-------PVVLLDEPTTYLD 170
Query: 266 PIASTVVE--DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323
+ VE L+R ++ +G+ + V V H + R D L+ L G ++
Sbjct: 171 --INHQVELMRLMRELNTQGK----------TVVTVLHDLNQASRYCDHLVVLANGHVMA 218
Query: 324 QGMTHE 329
QG E
Sbjct: 219 QGTPEE 224
|
Length = 255 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 2e-22
Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 33/242 (13%)
Query: 91 LIDCRNVYKSF--GEKHI--LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
L++ +++ +S+ GE+ + L+G+S I GE V I+G SG+GKST++ I+ L P G
Sbjct: 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG 63
Query: 147 EVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGF-LLYENS--KMRD 200
+ G+ A L +D ++ LR G +FQ L LT +NV +Y K R
Sbjct: 64 TYRVAGQDVATLDAD-ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRL 122
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ EL L +GL+ + PS+LSGG ++RV++AR+++ +V+L DEP
Sbjct: 123 LRAQEL----LQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG-------QVILADEP 171
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
T LD + V ++ + +G + ++VTH +A +R+I + +G+
Sbjct: 172 TGALDSHSGEEVMAILHQLRDRGH----------TVIIVTHDPQVAAQA-ERVIEIRDGE 220
Query: 321 IV 322
IV
Sbjct: 221 IV 222
|
Length = 648 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 2e-22
Identities = 72/262 (27%), Positives = 132/262 (50%), Gaps = 40/262 (15%)
Query: 89 DVLIDCRNVYKS-------FGEKHI--LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139
+ L++ RN+ K+ F + + ++ +SF +R G+ + IIG +G+GKST+ K++AG
Sbjct: 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG 61
Query: 140 LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVG----FLLYEN 195
++ P GE+ I D RI ++FQ + SL R+ + F L N
Sbjct: 62 MIEPTSGELLIDDHPLH--FGDYSYRSQRIRMIFQDPS--TSLNPRQRISQILDFPLRLN 117
Query: 196 SKMRDEQISELVKENLAAVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEP 252
+ + EQ + + E L VGL + D P L+ G K+R+ LAR++I + P
Sbjct: 118 TDLEPEQREKQIIETLRQVGL--LPDHASYYPHMLAPGQKQRLGLARALI-------LRP 168
Query: 253 EVLLYDEPTAGLD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311
+V++ DE A LD + S ++ ++ K+G SY+ VT ++ D
Sbjct: 169 KVIIADEALASLDMSMRSQLINLMLELQEKQG----------ISYIYVTQHLGMMKHISD 218
Query: 312 RLIFLYEGKIVWQGMTHEFTSS 333
+++ +++G++V +G T + +S
Sbjct: 219 QVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 2e-22
Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 29/230 (12%)
Query: 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168
GV+ ++ GE +G++G SG GKST + I GL+ GEV G+ G+ D+E +R
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM-KDDEWRAVR 97
Query: 169 --IGLVFQSAALFDSLTVRENVGFLLYE-----NSKMRDEQISELVKENLAAVGL-KGVE 220
I ++FQ SL R +G ++ E + K+ +++ + VK + VGL +
Sbjct: 98 SDIQMIFQDP--LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI 155
Query: 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD-PIASTVVEDLIRSV 279
+R P E SGG +R+ +AR++I +EP++++ DEP + LD I + VV +L++ +
Sbjct: 156 NRYPHEFSGGQCQRIGIARALI-------LEPKLIICDEPVSALDVSIQAQVV-NLLQQL 207
Query: 280 HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ E GL S + + H + ++ DR++ +Y G V G E
Sbjct: 208 QR--EMGL-------SLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDE 248
|
Length = 331 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 3e-22
Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 24/196 (12%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
N+ K++ + ++ VS + GE VG++GP+G GK+T ++ G++ D G +
Sbjct: 8 NLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI------- 60
Query: 156 AGLISDEEISGLR--------IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
+I DE+IS L IG + Q A++F L+V +N+ +L + EQ +
Sbjct: 61 --IIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRA 118
Query: 208 KENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
E + ++ + D + LSGG ++RV +AR++ + P+ +L DEP AG+DPI
Sbjct: 119 NELMEEFHIEHLRDSMGQSLSGGERRRVEIARAL-------AANPKFILLDEPFAGVDPI 171
Query: 268 ASTVVEDLIRSVHKKG 283
+ ++ +I + G
Sbjct: 172 SVIDIKRIIEHLRDSG 187
|
Length = 241 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 4e-22
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 28/185 (15%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
ID ++ FG+ +L GV +R G VG++GP+G GK+T+L+ I G L P G V +
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM-----------RD 200
G L + + R+ V Q +L VR+ V +M
Sbjct: 64 GDDVEALSARA--ASRRVASVPQDTSLSFEFDVRQVV--------EMGRTPHRSRFDTWT 113
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
E V+ + G+ DR + LSGG ++RV LAR++ + VLL DEP
Sbjct: 114 ETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARAL-------AQATPVLLLDEP 166
Query: 261 TAGLD 265
TA LD
Sbjct: 167 TASLD 171
|
Length = 402 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 6e-22
Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 41/239 (17%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYIRGRKRAG 157
G+K IL+GV+ ++ GE I+GP+G+GKST+ I G P +GE+ G
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH--PKYEVTEGEILFDGEDILE 72
Query: 158 LISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS-----ELVKENLA 212
L S +E + I L FQ +T + FL + R + + +KE
Sbjct: 73 L-SPDERARAGIFLAFQYPVEIPGVTNSD---FLRAAMNARRGARGILPEFIKELKEKAE 128
Query: 213 AVGLKGVEDRLPSEL----SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
+GL E+ L + SGG KKR + + ++ EP++ + DEP +GLD A
Sbjct: 129 LLGLD--EEFLERYVNEGFSGGEKKRNEILQLLLL-------EPKLAILDEPDSGLDIDA 179
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV--DRLIFLYEGKIVWQG 325
+V + I + L G +++TH + + + D++ LY+G+IV G
Sbjct: 180 LKIVAEGINA--------LREEGR--GVLIITH-YQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 7e-22
Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 30/230 (13%)
Query: 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYIRGRKRAGLISDEEI 164
++ ++ GE + ++G SG+GKS I GLL P GE+ + GR L I
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL----SI 59
Query: 165 SGLRIGLVFQS--AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR 222
G I + Q+ A T+ + L K+ Q L+ E L AVGL E+
Sbjct: 60 RGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSK-QARALILEALEAVGLPDPEEV 118
Query: 223 L---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV 279
L P +LSGGM +RV +A +++ EP L+ DEPT LD + V L+R +
Sbjct: 119 LKKYPFQLSGGMLQRVMIALALLL-------EPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 280 HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ G+ +++TH + R D + + +G+IV +G E
Sbjct: 172 RQLFGTGI---------LLITHDLGVVARIADEVAVMDDGRIVERGTVKE 212
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 7e-22
Identities = 80/272 (29%), Positives = 132/272 (48%), Gaps = 42/272 (15%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI---IAGLLAPDK--G 146
I +++ + + G+S I + IIGPSG GKST +K I+ L P K G
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG 67
Query: 147 EVYIRGRKRAGLISDEEISGLR----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
V G+ I D I+ R IG+VFQ F +++ ENV + + ++K+
Sbjct: 68 VVDFFGQN----IYDPRININRLRRQIGMVFQRPNPF-PMSIYENVAYGVRISAKLPQAD 122
Query: 203 ISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+ E+V+ L L + V+D+L LSGG ++R+ +AR++ +++P+VLL D
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL-------AIKPKVLLMD 175
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
EP + LDPIA+ VE+LI S+ + + +VTH R D F
Sbjct: 176 EPCSALDPIATMKVEELIHSLRSE-----------LTIAIVTHNMQQATRVSDFTAFFST 224
Query: 319 -----GKIVWQGMTHE-FTSSSNPIVQQFASG 344
G++V G+T + F++ + + + SG
Sbjct: 225 DESRIGQMVEFGVTTQIFSNPLDSRTRDYVSG 256
|
Length = 259 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 8e-22
Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 28/227 (12%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L GVSF + G+ + ++G SG GKST+ +++ + P GE+Y +G+ E
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK-ADPEAQKL 89
Query: 167 LR--IGLVFQSAALFDSLTVRENVGFLLYE----NSKMRDEQISELVKENLAAVGLKGVE 220
LR I +VFQ+ + SL R+ VG +L E N+ + + E +A VGL+ E
Sbjct: 90 LRQKIQIVFQNP--YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR-PE 146
Query: 221 --DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278
DR P SGG ++R+A+AR+++ D P+V++ DEP + LD V +L+
Sbjct: 147 HYDRYPHMFSGGQRQRIAIARALMLD-------PDVVVADEPVSALDVSVQAQVLNLMMD 199
Query: 279 VHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ + E GL SYV ++H S + D ++ +Y G+ V +G
Sbjct: 200 LQQ--ELGL-------SYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237
|
Length = 327 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 1e-21
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 50/225 (22%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
L+ ++ ++ GE V I+GP G+GKS++L + G L G V + G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------- 66
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS--ELVK--ENLAA-----VGL 216
I V Q + + T+REN+ F + + ++ I L E L +G
Sbjct: 67 --SIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGE 123
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IASTVVEDL 275
KG+ LSGG K+R++LAR++ D ++ L D+P + +D + + E+
Sbjct: 124 KGI------NLSGGQKQRISLARAVYSD-------ADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
I + + ++VTHQ + A D+++ L G+
Sbjct: 171 ILGLLLNN----------KTRILVTHQLQLLPHA-DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 1e-21
Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 28/238 (11%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKII--AGLLAPD---KGEVYIRGRKR 155
+ +K L VS E +IGPSG+GKST+L+ I L P+ G + G
Sbjct: 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
+D IG+VFQ F +++ ENV + L + + E V+++L
Sbjct: 75 YSPRTDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGAS 133
Query: 216 L-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+ V+DRL LSGG ++RV +AR + + P+++L DEPT+ LDPI++
Sbjct: 134 IWDEVKDRLHDSALGLSGGQQQRVCIARVL-------ATSPKIILLDEPTSALDPISAGK 186
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+E+ + + + ++VT R DR F +G ++ T +
Sbjct: 187 IEETLLGLKDD-----------YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233
|
Length = 252 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 2e-21
Identities = 71/256 (27%), Positives = 129/256 (50%), Gaps = 45/256 (17%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL----LAPDKGEVYIRGRKRAG 157
+++ +SF +R GE +G++G SG+GKST GL L +GE++ G+
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKST-----TGLALLRLINSQGEIWFDGQPLHN 351
Query: 158 LISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYE---------NSKMRDEQISEL 206
L + ++ +R I +VFQ SL R NV ++ E ++ R++Q+ +
Sbjct: 352 L-NRRQLLPVRHRIQVVFQDP--NSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAV 408
Query: 207 VKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
++E VGL R P+E SGG ++R+A+AR++I ++P +++ DEPT+ LD
Sbjct: 409 MEE----VGLDPETRHRYPAEFSGGQRQRIAIARALI-------LKPSLIILDEPTSSLD 457
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ L++S+ +K + LA Y+ ++H +R ++I L +G++V QG
Sbjct: 458 KTVQAQILALLKSLQQK--HQLA-------YLFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Query: 326 -MTHEFTSSSNPIVQQ 340
F + +Q
Sbjct: 509 DCERVFAAPQQEYTRQ 524
|
Length = 529 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 2e-21
Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 35/264 (13%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KGEVY 149
+ +G L+ ++ + + +IGPSG GKST L+ + L P +GE+
Sbjct: 20 NKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII 79
Query: 150 IRGRKRAGLISDE----EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ ++S E E+ +RI +VFQ F ++ ENV + L R + E
Sbjct: 80 LH-PDNVNILSPEVDPIEVR-MRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEE 136
Query: 206 LVKENLAAVGLKG-VEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
V+ L L V+DRL LSGG ++R+ +AR++ D PE+LL+DEPT
Sbjct: 137 RVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATD-------PEILLFDEPT 189
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
+ LDPIA+ +E+LI + K + ++VTH R D ++Y G++
Sbjct: 190 SALDPIATASIEELISDLKNK-----------VTILIVTHNMQQAARVSDYTAYMYMGEL 238
Query: 322 VWQGMTHE-FTSSSNPIVQQFASG 344
+ G T F N + + +G
Sbjct: 239 IEFGATDTIFIKPKNKQTEDYITG 262
|
Length = 265 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 3e-21
Identities = 66/253 (26%), Positives = 122/253 (48%), Gaps = 36/253 (14%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
I + KSFG H L+ V+ + GE ++G +G GKST++K+++G+ P KG + I
Sbjct: 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64
Query: 151 RGRKRAGLISDEEISG-LRIGLVFQSAALFDSLTVRENV-----------GFLLYENSKM 198
L D +++ L IG+++Q ++ D LTV EN+ G + + +M
Sbjct: 65 NNINYNKL--DHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM 122
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
R + + ++ VGLK D + LS K+ + +A++++ D +V++ D
Sbjct: 123 R-VRAAMMLLR----VGLKVDLDEKVANLSISHKQMLEIAKTLMLD-------AKVIIMD 170
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
EPT+ L + ++ + K+G + V ++H+ + IRR DR + +
Sbjct: 171 EPTSSLTNKEVDYLFLIMNQLRKEG----------TAIVYISHKLAEIRRICDRYTVMKD 220
Query: 319 GKIVWQGMTHEFT 331
G V GM + +
Sbjct: 221 GSSVCSGMVSDVS 233
|
Length = 510 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 3e-21
Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 35/242 (14%)
Query: 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--KGEVYIRGRKRA 156
+ E+ IL GV+ GE + ++GPSG+GKST+L +AG + + G + RK
Sbjct: 76 RQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT 135
Query: 157 GLISDEEISGLRIGLVFQSAALFDSLTVRENVGF---LLYENSKMRDEQISELVKENLAA 213
I R G V Q L+ LTVRE + F L S + E+I + + ++
Sbjct: 136 KQILK------RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKIL-VAESVISE 188
Query: 214 VGLKGVEDRLPSE-----LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
+GL E+ + +SGG +KRV++A ++ + P +L+ DEPT+GLD A
Sbjct: 189 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-------INPSLLILDEPTSGLDATA 241
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST-IRRAVDRLIFLYEGKIVWQGMT 327
+ R V G LA G + V HQ S+ + + D ++ L EG+ ++ G
Sbjct: 242 A------YRLVLTLG--SLAQKGK--TIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKG 291
Query: 328 HE 329
+
Sbjct: 292 SD 293
|
Length = 659 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 5e-21
Identities = 67/269 (24%), Positives = 122/269 (45%), Gaps = 48/269 (17%)
Query: 83 EPEDDGDV-----LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI 136
EP D ++ ++ R++ F + VSF+ + G+ V I+GP+G GK+T++ +
Sbjct: 321 EPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINL 380
Query: 137 IAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYE 194
+ + P G++ I G I+ LR I VFQ A LF+ ++REN+
Sbjct: 381 LQRVYDPTVGQILIDGID----INTVTRESLRKSIATVFQDAGLFNR-SIRENIRL---- 431
Query: 195 NSKMRDEQISELVKENLAAVGLKGVEDRLP----------SELSGGMKKRVALARSIIFD 244
E+ + AA + R + LSGG ++R+A+AR+I+ +
Sbjct: 432 --GREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304
+L+ DE T+ LD V++ I ++ K + ++ H+ S
Sbjct: 490 -------APILVLDEATSALDVETEARVKNAIDALRKN-----------RTTFIIAHRLS 531
Query: 305 TIRRAVDRLIFLYEGKIVWQGMTHEFTSS 333
T+R A D ++FL +G+++ +G E
Sbjct: 532 TVRNA-DLVLFLDQGRLIEKGSFQELIQK 559
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 6e-21
Identities = 73/259 (28%), Positives = 118/259 (45%), Gaps = 52/259 (20%)
Query: 72 SSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKS 131
+S T+ E+ NVY +G ++ V I + IGPSG GKS
Sbjct: 1 TSTLNGTETVLRTEN--------LNVY--YGSFLAVKNVWLDIPKNQITAFIGPSGCGKS 50
Query: 132 TILK-------IIAGLLAPDKGEVYIRGRKRAGLISDEEISGL----RIGLVFQSAALFD 180
TIL+ +I G +G+V G+ + ++ + RIG+VFQ F
Sbjct: 51 TILRCFNRLNDLIPGFRV--EGKVTFHGKN----LYAPDVDPVEVRRRIGMVFQKPNPF- 103
Query: 181 SLTVRENVGFLLYENSKMRDEQISELVKENL-AAVGLKGVEDRLP---SELSGGMKKRVA 236
++ +N+ + N D + ELV+ +L A V+D+L LSGG ++R+
Sbjct: 104 PKSIYDNIAYGARINGYKGD--MDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLC 161
Query: 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY 296
+AR+I +V+PEV+L DEP + LDPI++ +E+L+ H+ E +
Sbjct: 162 IARAI-------AVQPEVILMDEPCSALDPISTLRIEELM---HELKEQ--------YTI 203
Query: 297 VVVTHQHSTIRRAVDRLIF 315
++VTH R D F
Sbjct: 204 IIVTHNMQQAARVSDMTAF 222
|
Length = 264 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 6e-21
Identities = 75/252 (29%), Positives = 125/252 (49%), Gaps = 39/252 (15%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD---KG 146
I N+ +GEK L+ VS +I +IGPSG GKST ++ + + L + +G
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGF---LLYENSKMRDE 201
+V I G D ++ LR +G+VFQ F +++ +NV + + N K
Sbjct: 73 KVSIEGEDIYE--PDVDVVELRKNVGMVFQKPNPF-PMSIYDNVAYGPRIHGANKK---- 125
Query: 202 QISELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257
+ +V+ L + L DRL S LSGG ++R+ +AR++ +V+P+++L+
Sbjct: 126 DLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL-------AVKPKIILF 178
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317
DEPT+ LDPI++ +EDLI ++ K + V+VTH R D F
Sbjct: 179 DEPTSALDPISTARIEDLIMNLKKD-----------YTIVIVTHNMQQAARISDYTGFFL 227
Query: 318 EGKIVWQGMTHE 329
G+++ G T +
Sbjct: 228 MGELIEFGQTRQ 239
|
Length = 258 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-20
Identities = 78/296 (26%), Positives = 126/296 (42%), Gaps = 54/296 (18%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEV- 148
I+ +N+ K F K +L+ +SF I GE +GI+G SG GKS ++ ++ G+ P G +
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 149 ----------YIRGRKRAGL------------------ISDEEISGL--RIGLVFQSA-A 177
Y+ + G +SD+ + RI ++ Q A
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237
L+ TV +NV L E E + V + + V L + +LSGG K+RV L
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAV-DLIEMVQLSHRITHIARDLSGGEKQRVVL 179
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297
AR + + EP + L DEPT LDP + +V + + K +G+ S V
Sbjct: 180 ARQL-------AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVK--ASGI-------SMV 223
Query: 298 VVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS---SSNPIVQQFASGSLEGPI 350
+ +H I D+ I+L G+I +G E + V++ + PI
Sbjct: 224 LTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVEKECEVEVGEPI 279
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 1e-20
Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 27/244 (11%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
E + V+ + G+ I+G +G+GKST+++ I LL P G V + D+
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 163 EISGLR--IGLVFQ--SAALFDSLTVRENVGFLLY--ENSKMRDEQISELVKENLAAVGL 216
I +R IG+VFQ + LF+ RE +++ +N KM +++ L +G
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVERE----IIFGPKNFKMNLDEVKNYAHRLLMDLGF 134
Query: 217 -KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
+ V + P ++SGG +++A+ SI+ ++ P++++ DEPTAGLDP + V L
Sbjct: 135 SRDVMSQSPFQMSGGQMRKIAIV-SIL------AMNPDIIVLDEPTAGLDPQSKRQVMRL 187
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSN 335
++S+ EN + ++V+H + + R D +I + EG IV Q E
Sbjct: 188 LKSLQTD-EN--------KTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
Query: 336 PIVQ 339
+
Sbjct: 239 KLAD 242
|
Length = 286 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 1e-20
Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 45/249 (18%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L G++ +R GE V ++GPSG GKST+ +++ P G + + G L D
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL--DPAELR 413
Query: 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA------------- 213
R+ LV Q LF + +V EN+ Y DE++ + A
Sbjct: 414 ARMALVPQDPVLF-AASVMENIR---YGRPDATDEEVEAAARAAHAHEFISALPEGYDTY 469
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
+G +GV LSGG ++R+A+AR+I+ + +LL DE T+ LD + +V+
Sbjct: 470 LGERGV------TLSGGQRQRIAIARAIL-------KDAPILLLDEATSALDAESEQLVQ 516
Query: 274 DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSS 333
+ ++ KG L ++ H+ +T+ +A DR++ + +G+IV QG TH +
Sbjct: 517 QALETL-MKGRTTL----------IIAHRLATVLKA-DRIVVMDQGRIVAQG-THAELIA 563
Query: 334 SNPIVQQFA 342
+ + A
Sbjct: 564 KGGLYARLA 572
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 2e-20
Identities = 80/281 (28%), Positives = 135/281 (48%), Gaps = 60/281 (21%)
Query: 65 PATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAV 120
P F +S + V + NV SF + +L+G+S +I+ GE V
Sbjct: 322 PEVTFPTTSTAAADQ----------VSLTLNNV--SFTYPDQPQPVLKGLSLQIKAGEKV 369
Query: 121 GIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAAL 178
++G +G GKST+L+++ P +GE+ + G+ I+D + LR I +V Q L
Sbjct: 370 ALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP----IADYSEAALRQAISVVSQRVHL 425
Query: 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLP---------SELS 228
F S T+R+N LL DE + E+ L VGL K +ED +LS
Sbjct: 426 F-SATLRDN---LLLAAPNASDEALIEV----LQQVGLEKLLEDDKGLNAWLGEGGRQLS 477
Query: 229 GGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLA 288
GG ++R+ +AR+++ D +LL DEPT GLD + +L+ H + +
Sbjct: 478 GGEQRRLGIARALLHD-------APLLLLDEPTEGLDAETERQILELLAE-HAQNK---- 525
Query: 289 NPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ +++TH+ + + + DR+ + G+I+ QG TH+
Sbjct: 526 ------TVLMITHRLTGLEQ-FDRICVMDNGQIIEQG-THQ 558
|
Length = 574 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 48/261 (18%)
Query: 83 EPEDDGDV-----LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI 136
+P D+ ++ +V S+ + + VSF+ + G+ V I+GP+G GKST++ +
Sbjct: 321 DPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINL 380
Query: 137 IAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVREN--VGFLL 192
+ + P G + I G I + LR I +VFQ A LF+ ++ +N VG
Sbjct: 381 LQRVFDPQSGRILIDGTD----IRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRPD 435
Query: 193 YENSKMRD----EQISELVKENL----AAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244
+ +MR Q + ++ VG +G +LSGG ++R+A+AR+++ D
Sbjct: 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG------RQLSGGERQRLAIARALLKD 489
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304
P +L+ DE T+ LD V+ + + K ++ ++ H+ S
Sbjct: 490 -------PPILILDEATSALDVETEAKVKAALDELMK----------GRTTF-IIAHRLS 531
Query: 305 TIRRAVDRLIFLYEGKIVWQG 325
T+R A DR++ G++V G
Sbjct: 532 TVRNA-DRILVFDNGRVVESG 551
|
Length = 588 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 2e-20
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 26/184 (14%)
Query: 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168
V+ ++R E V +IGP+G GK+T+ + G P G + +RG+ GL +I+ R
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL-PGHQIA--R 79
Query: 169 IGLV--FQSAALFDSLTVRENV----------GFL--LYENSKMR--DEQISELVKENLA 212
+G+V FQ LF +TV EN+ G L + R + + + L
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE 139
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
VGL +R L+ G ++R+ +AR ++ +PE+L+ DEP AGL+P + +
Sbjct: 140 RVGLLEHANRQAGNLAYGQQRRLEIARCMV-------TQPEILMLDEPAAGLNPKETKEL 192
Query: 273 EDLI 276
++LI
Sbjct: 193 DELI 196
|
Length = 255 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 3e-20
Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 49/243 (20%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+ IL G+SF I G+ V I+G SG GKSTIL+++ + G + I G+ I D
Sbjct: 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQD----IRD 329
Query: 162 EEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDE---------QISELVK-- 208
LR IG+V Q LF+ T+ N+ Y E QI + ++
Sbjct: 330 VTQQSLRRAIGIVPQDTVLFND-TIAYNIK---YGRPDATAEEVGAAAEAAQIHDFIQSL 385
Query: 209 -ENLAA-VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
E VG +G+ +LSGG K+RVA+AR+I+ P +L+ DE T+ LD
Sbjct: 386 PEGYDTGVGERGL------KLSGGEKQRVAIARTIL-------KNPPILILDEATSALD- 431
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326
T E I++ ++ G + +V+ H+ STI A D +I L G+IV +G
Sbjct: 432 ---THTEQAIQAALREVSAG-------RTTLVIAHRLSTIIDA-DEIIVLDNGRIVERG- 479
Query: 327 THE 329
THE
Sbjct: 480 THE 482
|
Length = 497 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 3e-20
Identities = 74/243 (30%), Positives = 116/243 (47%), Gaps = 40/243 (16%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPD 144
+++I +NV S+G ++ V I G+ +IGPSG GKST+L+ + + L
Sbjct: 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEG 68
Query: 145 ---KGEVYIRGRKRAGLISDEEISGL----RIGLVFQSAALFDSLTVRENVGFLLYENSK 197
KG V G + D + + RIG+VFQ F ++ EN+ F N
Sbjct: 69 CSLKGRVLFDGTD----LYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGY 123
Query: 198 MRDEQISELVKENL--AAVGLKGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEP 252
D + ELV+ +L AAV +D+L LSGG ++R+ +AR+I ++EP
Sbjct: 124 TGD--MDELVERSLRKAAV-WDECKDKLNESGYSLSGGQQQRLCIARTI-------AIEP 173
Query: 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
EV+L DEP + LDPI++ +E+ + + K + V+VTH R D
Sbjct: 174 EVILMDEPCSALDPISTLKIEETMHELKKN-----------FTIVIVTHNMQQAVRVSDM 222
Query: 313 LIF 315
F
Sbjct: 223 TAF 225
|
Length = 269 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 3e-20
Identities = 67/234 (28%), Positives = 103/234 (44%), Gaps = 53/234 (22%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--PDKGEVYIRG 152
++++ S G K IL+GV+ I+ GE ++GP+G+GKST+ K I G +GE+ +G
Sbjct: 4 KDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG 63
Query: 153 RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
L EE + L I L FQ + + FL Y N
Sbjct: 64 EDITDL-PPEERARLGIFLAFQYPPEIPGVKNAD---FLRYVN----------------- 102
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
G SGG KKR + + ++ EP++ + DEP +GLD A +V
Sbjct: 103 -EG-----------FSGGEKKRNEILQLLLL-------EPDLAILDEPDSGLDIDALRLV 143
Query: 273 EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV-DRLIFLYEGKIVWQG 325
++I N L G S +++TH + DR+ LY+G+IV G
Sbjct: 144 AEVI--------NKLREEGK--SVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 72/273 (26%), Positives = 125/273 (45%), Gaps = 52/273 (19%)
Query: 67 TKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPS 126
++F + K +N L +GD++I+ + +G IL +S I+ I+G S
Sbjct: 456 SEFINKKKRTELNNL-----NGDIVINDVSYSYGYGSN-ILSDISLTIKMNSKTTIVGMS 509
Query: 127 GTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTV 184
G+GKST+ K++ G GE+ + G + D + LR I + Q +F ++
Sbjct: 510 GSGKSTLAKLLVGFFQARSGEILLNGF----SLKDIDRHTLRQFINYLPQEPYIFSG-SI 564
Query: 185 RENVGFLLYENSKMRDEQISELVK--------ENLAAVGLKGVEDRLPSE---LSGGMKK 233
EN+ LL + ++I + EN+ G + L E +SGG K+
Sbjct: 565 LENL--LLGAKENVSQDEIWAACEIAEIKDDIENMP----LGYQTELSEEGSSISGGQKQ 618
Query: 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS-TVVEDLIRSVHKKGENGLANPGN 292
R+ALAR+++ + +VL+ DE T+ LD I +V +L+ K
Sbjct: 619 RIALARALL-------TDSKVLILDESTSNLDTITEKKIVNNLLNLQDK----------- 660
Query: 293 IASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ + V H+ S + + D++I L GKI+ QG
Sbjct: 661 --TIIFVAHRLS-VAKQSDKIIVLDHGKIIEQG 690
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (215), Expect = 1e-19
Identities = 78/259 (30%), Positives = 127/259 (49%), Gaps = 35/259 (13%)
Query: 88 GDVLIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
D+++D NV ++ +K L S + + +IG +G+GKST++++ GL+
Sbjct: 5 KDIILD--NVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62
Query: 143 PDKGEVYIRGRK-RAGLISDEEISGLR--IGLVFQ--SAALFDSLTVRENVGF---LLYE 194
+ G+ + A L +E+ LR IGLVFQ LF T+ +++ F L E
Sbjct: 63 SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQE-TIEKDIAFGPVNLGE 121
Query: 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254
N + +++ EL+K L + V+ R P ELSGG K+RVALA I D
Sbjct: 122 NKQEAYKKVPELLK--LVQLPEDYVK-RSPFELSGGQKRRVALAGIIAMDG-------NT 171
Query: 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314
L+ DEPT GLDP +L ++K+ + + ++VTH + R D +I
Sbjct: 172 LVLDEPTGGLDPKGEEDFINLFERLNKEYKKRI---------IMVTHNMDQVLRIADEVI 222
Query: 315 FLYEGKIVWQGMTHEFTSS 333
++EGK++ G E S+
Sbjct: 223 VMHEGKVISIGSPFEIFSN 241
|
Length = 289 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (214), Expect = 2e-19
Identities = 72/249 (28%), Positives = 121/249 (48%), Gaps = 33/249 (13%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-------GEV 148
N+ F K +L VS ++GP+G+GK+T L+ + + DK G+V
Sbjct: 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM--NDKVSGYRYSGDV 83
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
+ GR E R+G++FQ F +++ +NV + + + ++ + +
Sbjct: 84 LLGGRSIFNYRDVLEFR-RRVGMLFQRPNPF-PMSIMDNVLAGVRAHKLVPRKEFRGVAQ 141
Query: 209 ENLAAVGL-KGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
L VGL V+DRL P LSGG ++ + LAR++ +V PEVLL DEPT+ L
Sbjct: 142 ARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL-------AVNPEVLLLDEPTSAL 194
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
DP + +E+ IRS+ + + ++VTH + R DR ++G++V +
Sbjct: 195 DPTTTEKIEEFIRSLADR-----------LTVIIVTHNLAQAARISDRAALFFDGRLVEE 243
Query: 325 GMTHEFTSS 333
G T + SS
Sbjct: 244 GPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 2e-19
Identities = 77/257 (29%), Positives = 125/257 (48%), Gaps = 34/257 (13%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I N+ + + IL GVS +I + IIGPSG GKST LK + + + EV +
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL-NRMNELESEVRVE 66
Query: 152 GRKRAGLISDEE----ISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
GR + E ++ LR + +V LF ++V +NV + + +I +
Sbjct: 67 GRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF-PMSVYDNVAYGVKIVGWRPKLEIDD 125
Query: 206 LVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
+V+ L L ++ ++ +LSGG ++R+ +AR++ +V+P+VLL DEP
Sbjct: 126 IVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL-------AVKPKVLLMDEPC 178
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE--- 318
GLDPIAS VE LI+S+ + E + V+V+H + R D F
Sbjct: 179 FGLDPIASMKVESLIQSLRLRSE---------LTMVIVSHNLHQVSRLSDFTAFFKGNEN 229
Query: 319 --GKIVWQGMTHE-FTS 332
G++V G+T + F S
Sbjct: 230 RIGQLVEFGLTKKIFNS 246
|
Length = 261 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 5e-19
Identities = 80/278 (28%), Positives = 128/278 (46%), Gaps = 60/278 (21%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL------APDKGEVYIRGRKRAGLISDEE 163
+S+ ++ GE VGI+G SG+GKS I GL+ +K E + +R IS++E
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR---ISEKE 82
Query: 164 ---ISGLRIGLVFQSAALFDSLTVRENVGFLLYE--------NSKMRDEQISELVKENLA 212
+ G + ++FQ SL VGF + E N K R ++ +L L
Sbjct: 83 RRNLVGAEVAMIFQDP--MTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDL----LN 136
Query: 213 AVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
VG+ RL P +LSGGM +RV +A +I + P++L+ DEPT LD
Sbjct: 137 QVGIPDPASRLDVYPHQLSGGMSQRVMIAMAI-------ACRPKLLIADEPTTALDVTIQ 189
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ +L+ + +K L V++TH + + A ++I +Y G++V G H+
Sbjct: 190 AQIIELLLELQQKENMAL---------VLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240
Query: 330 -FTSSSNPIVQ-------QFASG-----SLEG--PIRY 352
F + +P Q +FA SL G P +Y
Sbjct: 241 IFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKY 278
|
Length = 326 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 6e-19
Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 29/235 (12%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG-----RKRAGLISDEEI 164
+SF+I GE VG +G +G GKST LK++ GLL P G+V + G R+ L S +
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224
G ++ L + AL DSL V + L+YE + D++ +E + + L+G
Sbjct: 103 MGQKLQLWWDLPAL-DSLEVLK----LIYE---IPDDEFAERLDFLTEILDLEGFLKWPV 154
Query: 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
+LS G + R LA +++ P+VL DEPT GLD A + + ++ +++ +
Sbjct: 155 RKLSLGQRMRAELAAALLHP-------PKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ 207
Query: 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQ 339
A+ ++ TH I DR++ + +G++V+ G + P +
Sbjct: 208 ---------ATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKE 253
|
Length = 325 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 9e-19
Identities = 77/266 (28%), Positives = 121/266 (45%), Gaps = 55/266 (20%)
Query: 70 NDSSKSENVNTLFEP--EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSG 127
+ K ++ P GD +I+ N+ K FG+K ++ +SFK+ G VG+IGP+G
Sbjct: 299 QEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNG 358
Query: 128 TGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS-AALFDSLTVRE 186
GKST+ ++I G PD G + I G +++ V QS AL + TV E
Sbjct: 359 AGKSTLFRMITGQEQPDSGTIKI-G------------ETVKLAYVDQSRDALDPNKTVWE 405
Query: 187 NV--GFLLYENSKMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVALARSIIF 243
+ G + ++ ++ + + KG + + +LSGG + RV LA+++
Sbjct: 406 EISGG---LDIIQLGKREVPS--RAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTL-- 458
Query: 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN-PGNIASYVVVTHQ 302
K VLL DEPT LD VE L R++ E L G VV++H
Sbjct: 459 ---KSG--GNVLLLDEPTNDLD------VETL-RAL----EEALLEFAG---CAVVISHD 499
Query: 303 HSTIRRAVDRL---IFLYEG--KIVW 323
R +DR+ I +EG + W
Sbjct: 500 ----RWFLDRIATHILAFEGDSHVEW 521
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 9e-19
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 54/218 (24%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
+R VSF++R GE VGI G G G++ + + + GL P GE+ + G+ + I
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR- 74
Query: 167 LRIGLV---FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
I V + L L+V EN+ L
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIA---------------------------------L 101
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
S LSGG +++V LAR + D P VL+ DEPT G+D A + LIR + G
Sbjct: 102 SSLLSGGNQQKVVLARWLARD-------PRVLILDEPTRGVDVGAKAEIYRLIRELADAG 154
Query: 284 ENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
+ ++++ + + DR++ +YEG+I
Sbjct: 155 ----------KAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-18
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 26/186 (13%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+ NV SFG++ +L VS +++ G+ + ++GP+G GKST+++++ GL+APD+G +
Sbjct: 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-- 61
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
+ LRIG V Q L +L + V L + E I +K
Sbjct: 62 -----------KRNGKLRIGYVPQKLYLDTTLPL--TVNRFLRLRPGTKKEDILPALKRV 108
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
A + D +LSGG +RV LAR+++ P++L+ DEPT G+D
Sbjct: 109 QAGHLI----DAPMQKLSGGETQRVLLARALL-------NRPQLLVLDEPTQGVDVNGQV 157
Query: 271 VVEDLI 276
+ DLI
Sbjct: 158 ALYDLI 163
|
Length = 251 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 2e-18
Identities = 73/272 (26%), Positives = 135/272 (49%), Gaps = 37/272 (13%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK-------IIAGLL 141
+ +I+ N+ + + L ++ KI +IGPSG GKST L+ ++ G+
Sbjct: 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 142 APDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMR 199
+G V G+ ++ +I LR IG+VFQ+ F +++ +N+ + +
Sbjct: 65 I--EGNVIYEGKNIYS--NNFDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKD 119
Query: 200 DEQISELVKENLAAVGL-KGVEDRLPS---ELSGGMKKRVALARSIIFDNTKESVEPEVL 255
+++ E+V+++L L V+D+L + LSGG ++R+ +AR++ ++EP V+
Sbjct: 120 KKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL-------AIEPNVI 172
Query: 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
L DEPT+ LDPI++ +E+LI ++ + + ++VTH R DR F
Sbjct: 173 LMDEPTSALDPISTGKIEELIINLKES-----------YTIIIVTHNMQQAGRISDRTAF 221
Query: 316 LYEGKIVWQGMTHE-FTSSSNPIVQQFASGSL 346
G I + T E F + N +++ SG
Sbjct: 222 FLNGCIEEESSTDELFFNPKNTKTEEYISGKF 253
|
Length = 254 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 85.9 bits (214), Expect = 2e-18
Identities = 77/248 (31%), Positives = 117/248 (47%), Gaps = 57/248 (22%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
GD +I+ N+ KSFG++ ++ +SF + G VGIIGP+G GKST+ K+I G PD G
Sbjct: 321 GDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT 380
Query: 148 VYIRGRKRAGLISDEEISG--LRIGLVFQS-AALFDSLTVRENV--GFLLYENSKMRDEQ 202
+ I G +++ V QS AL + TV E + G + K+ + +
Sbjct: 381 IKI---------------GETVKLAYVDQSRDALDPNKTVWEEISGG---LDIIKVGNRE 422
Query: 203 ISELVKENLAAVGLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
I + + KG + + LSGG + R+ LA+++ VLL DEPT
Sbjct: 423 IPS--RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLK-------QGGNVLLLDEPT 473
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLAN-PGNIASYVVVTHQHSTIRRAVDRL---IFLY 317
LD VE L R++ E L PG VV++H R +DR+ I +
Sbjct: 474 NDLD------VETL-RAL----EEALLEFPG---CAVVISHD----RWFLDRIATHILAF 515
Query: 318 EG--KIVW 323
EG ++ W
Sbjct: 516 EGDSQVEW 523
|
Length = 556 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-18
Identities = 65/209 (31%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
RN FG F + GEA+ + G +G GK+T+L+++AGLL + G++ I G+
Sbjct: 21 RNEEPVFGPLD------FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKT 74
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
++ L L L+ EN+ FL + + ++ LA V
Sbjct: 75 ATRGDRSRFMAYLG-----HLPGLKADLSTLENLHFL----CGLHGRRAKQMPGSALAIV 125
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
GL G ED L +LS G KKR+ALAR + S P LL DEP A LD T+V
Sbjct: 126 GLAGYEDTLVRQLSAGQKKRLALARLWL------SPAPLWLL-DEPYANLDLEGITLVNR 178
Query: 275 LIRS-VHKKGENGLANPGNIASYVVVTHQ 302
+I + + G + G A+ V T
Sbjct: 179 MISAHLRGGGAALVTTHGAYAAPPVRTRM 207
|
Length = 214 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 5e-18
Identities = 69/253 (27%), Positives = 113/253 (44%), Gaps = 51/253 (20%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYI 150
++++ S +K IL+GV+ ++ GE I+GP+G+GKST+ K IAG P G +
Sbjct: 4 KDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILF 61
Query: 151 RG----------RKRAGLI----SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196
+G R RAGL EEI G+ +SA R G
Sbjct: 62 KGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSAL----NARRSARG-----EE 112
Query: 197 KMRDEQISELVKENLAAVGLKG--VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254
+ +L+K LA +G+ + + SGG KKR + + + +EP++
Sbjct: 113 PLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL-------LEPKL 165
Query: 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV--DR 312
+ DE +GLD A +V + I N L P S++++TH + + + D
Sbjct: 166 AILDEIDSGLDIDALKIVAEGI--------NRLREPDR--SFLIITH-YQRLLNYIKPDY 214
Query: 313 LIFLYEGKIVWQG 325
+ L +G+IV G
Sbjct: 215 VHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 1e-17
Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 23/237 (9%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160
+G+ + ++ +I G IIGP+G GKST+L+ ++ L+ P G V++ G S
Sbjct: 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS 76
Query: 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM----RDEQISELVKENLAAVGL 216
E RIGL+ Q+A +TV+E V Y + + R E E V + + A G+
Sbjct: 77 KE--VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED-EEAVTKAMQATGI 133
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
+ D+ LSGG ++R +A + + E ++L DEPT LD + +L+
Sbjct: 134 THLADQSVDTLSGGQRQRAWIAMVL-------AQETAIMLLDEPTTWLDISHQIDLLELL 186
Query: 277 RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSS 333
++++ LA V H + R LI L EGKIV QG E ++
Sbjct: 187 SELNREKGYTLA---------AVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234
|
Length = 265 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (199), Expect = 1e-17
Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 40/256 (15%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I R V + + +L+ ++ + IIGPSG GKST+L+ A ++ +
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLR------ALNRMNDIVS 58
Query: 152 GRKRAG--LISDEEISG---------LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
G + G L+ +E I R+G+VFQ F ++ +NV F
Sbjct: 59 GARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQ 117
Query: 201 EQISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLL 256
++ E+V+++L L V+D L LSGG ++R+ +AR + ++EPEV+L
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL-------AIEPEVIL 170
Query: 257 YDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316
DEP + LDP+++ +E+L++ + + + +VTH RA D FL
Sbjct: 171 MDEPCSALDPVSTMRIEELMQELKQN-----------YTIAIVTHNMQQAARASDWTGFL 219
Query: 317 YEGKIVWQGMTHEFTS 332
G +V G T E S
Sbjct: 220 LTGDLVEYGRTGEIFS 235
|
Length = 251 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-17
Identities = 73/245 (29%), Positives = 109/245 (44%), Gaps = 46/245 (18%)
Query: 91 LIDCRNVYKSFGEKH-------ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
++ NV K+F +LR VS + GE V + GPSG+GKST+L+ + P
Sbjct: 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP 63
Query: 144 DKGEVYIRGRKRAGLISD------EEISGLR---IGLVFQSAALFDSLTVRENVGFLLYE 194
D+G++ +R G D E+ +R IG V Q + ++ + V L
Sbjct: 64 DEGQILVR---HEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA 120
Query: 195 NSKMRDEQISELVKENLAAVGLKGVEDRL----PSELSGGMKKRVALARSIIFDNTKESV 250
R+ + L + L +RL P+ SGG ++RV +AR I V
Sbjct: 121 RGVPREVA-RAKAADLLTRLNLP---ERLWSLAPATFSGGEQQRVNIARGFI-------V 169
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310
+ +LL DEPTA LD VV +LIR +G A+ V + H +R AV
Sbjct: 170 DYPILLLDEPTASLDATNRAVVVELIREAKARG----------AALVGIFHDEE-VREAV 218
Query: 311 -DRLI 314
DRL+
Sbjct: 219 ADRLL 223
|
Length = 235 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (197), Expect = 3e-17
Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 45/260 (17%)
Query: 72 SSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKS 131
SS+S++ + P+ + + V +G L V KI + + IGPSG GKS
Sbjct: 4 SSRSQSDSATINPDHS---VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKS 60
Query: 132 TILK-------IIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR----IGLVFQSAALFD 180
T+L+ +I G A +G + R R I D +I+ ++ +G+VFQ F
Sbjct: 61 TLLRCFNRMNDLIPG--AKVEGRLLYRDRN----IYDSQINSVKLRRQVGMVFQRPNPFP 114
Query: 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVA 236
++ EN+ F N + + ELV+++L + + V+D+L + LSGG ++R+
Sbjct: 115 K-SIYENIAFAPRANGYKGN--LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC 171
Query: 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY 296
+AR+I +++P+VLL DEP + LDPI++ VE+L + ++ +
Sbjct: 172 IARAI-------AMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-----------YTI 213
Query: 297 VVVTHQHSTIRRAVDRLIFL 316
++VTH R D F
Sbjct: 214 IMVTHNMQQASRVADWTAFF 233
|
Length = 274 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 7e-17
Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 41/233 (17%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169
+S ++R GE + ++GP+G GKST+L +AGLL P G + G+ S E++ R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAW-SAAELARHRA 72
Query: 170 GLVFQSAALFDSLTVRENVGFL-LYENSKMRDEQISELVKENLAAVGLKGVEDRLP---S 225
L Q F ++ V + +L L++ K R E ++ + E A+GL +D+L +
Sbjct: 73 YLSQQQTPPF-AMPVFQ---YLTLHQPDKTRTEAVASALNEVAEALGL---DDKLGRSVN 125
Query: 226 ELSGGMKKRVALARSIIFDNTKESVEPEV------LLYDEPTAGLDPIASTVVEDLIRSV 279
+LSGG +RV LA ++ V P++ LL DEP LD +A D + +
Sbjct: 126 QLSGGEWQRVRLAAVVL------QVWPDINPAGQLLLLDEPMNSLD-VAQQAALDRL--L 176
Query: 280 HKKGENGLANPGNIASYVVVTHQHS---TIRRAVDRLIFLYEGKIVWQGMTHE 329
+ + G+A VV H T+R A DR+ L +GK++ G E
Sbjct: 177 SELCQQGIA---------VVMSSHDLNHTLRHA-DRVWLLKQGKLLASGRRDE 219
|
Length = 248 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 1e-16
Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 18/201 (8%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--KGEV 148
L++ + + K+FG L G+ ++R GE VG+ G +G GKST++KI++G+ GE+
Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60
Query: 149 YIRGRK-RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE----NSKMRDEQI 203
Y G +A I D E +G I ++ Q L L+V EN+ FL E +M +
Sbjct: 61 YWSGSPLKASNIRDTERAG--IVIIHQELTLVPELSVAENI-FLGNEITLPGGRMAYNAM 117
Query: 204 SELVKENLAAVGLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
K L + L P + GG ++ V +A+++ + + +L+ DEP++
Sbjct: 118 YLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL-------NKQARLLILDEPSS 170
Query: 263 GLDPIASTVVEDLIRSVHKKG 283
L + ++ D+IR + G
Sbjct: 171 SLTEKETEILLDIIRDLKAHG 191
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 1e-16
Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 29/245 (11%)
Query: 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR----KRA 156
+ ++ +L+G++ G++G +G GKST+ ++GLL P KG V +G+ +
Sbjct: 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKR 70
Query: 157 GLISDEEISGLRIGLVFQ--SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV 214
GL++ + ++ VFQ +F + + ++ F L N + + +I+ V E L V
Sbjct: 71 GLLALRQ----QVATVFQDPEQQIFYT-DIDSDIAFSL-RNLGVPEAEITRRVDEALTLV 124
Query: 215 GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
+ + LS G KKRVA+A +++ ++ LL DEPTAGLDP T +
Sbjct: 125 DAQHFRHQPIQCLSHGQKKRVAIAGALV-------LQARYLLLDEPTAGLDPAGRTQMIA 177
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSS 334
+IR + +G + ++ +H I D + L +G+I+ G E + +
Sbjct: 178 IIRRIVAQGNH----------VIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227
Query: 335 NPIVQ 339
+ Q
Sbjct: 228 EAMEQ 232
|
Length = 271 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 56/204 (27%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+K IL+ +S G +G++G +G GKST+L+I+AG+ GE
Sbjct: 16 PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP--------- 66
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE--QISEL------------- 206
G+++G + Q L + TVRENV + E D +IS
Sbjct: 67 ----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLA 122
Query: 207 ----VKENLAAVGLKGVED---------RLP------SELSGGMKKRVALARSIIFDNTK 247
++E + A ++ R P ++LSGG ++RVAL R ++
Sbjct: 123 EQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLL----- 177
Query: 248 ESVEPEVLLYDEPTAGLDPIASTV 271
+P++LL DEPT LD A +V
Sbjct: 178 --SKPDMLLLDEPTNHLD--AESV 197
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-16
Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 34/221 (15%)
Query: 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171
GE +G++GP+G GK+T+L+ I GL+ P KG V + G IG
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-------GWRHIGY 53
Query: 172 VFQSAAL-FD-SLTVRENV-----GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224
V Q +D ++V V G + + + + V++ L VGL + DR
Sbjct: 54 VPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA--VRDALRRVGLTELADRPV 111
Query: 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
ELSGG ++RV +AR++ + P VLL DEP GLD ++ +L
Sbjct: 112 GELSGGQRQRVLVARAL-------ATRPSVLLLDEPFTGLDMPTQELLTELFIE------ 158
Query: 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
LA G + ++ TH + DR++ L G+++ G
Sbjct: 159 --LAGAGT--AILMTTHDLAQAMATCDRVV-LLNGRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 3e-16
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 45/234 (19%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+L+ +SF I+ GE VGI+G +G+GKS++L + L+ G + I G IS
Sbjct: 15 NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGV----DISK 70
Query: 162 EEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV 219
+ LR I ++ Q LF T+R N+ + DE++ + L VGLK
Sbjct: 71 IGLHDLRSRISIIPQDPVLFSG-TIRSNLDPF----GEYSDEEL----WQALERVGLKEF 121
Query: 220 EDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
+ LP LS G ++ + LAR+++ + ++L+ DE TA +DP
Sbjct: 122 VESLPGGLDTVVEEGGENLSVGQRQLLCLARALL-------RKSKILVLDEATASVDPET 174
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
+++ IR K + + + H+ TI DR++ L +G++V
Sbjct: 175 DALIQKTIREAFKD-----------CTVLTIAHRLDTI-IDSDRILVLDKGRVV 216
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 1e-15
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 38/253 (15%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-----YIRGRKRA----G 157
+R +SF ++ GE + I+G SG+GKS + LL G V +R R R
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91
Query: 158 LISDEEISGLR---IGLVFQS--AALFDSLTVRENVG--FLLYENSKMRDEQISELVKEN 210
S ++ +R + ++FQ +L TV E + L++ + R+E + E K
Sbjct: 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS-REEAMVE-AKRM 149
Query: 211 LAAVGL---KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
L V + + + R P +LSGGM++RV +A ++ S P VL+ DEPT LD
Sbjct: 150 LDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMAL-------SCRPAVLIADEPTTALDVT 202
Query: 268 ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
+ LI+ + K+ G+ + +TH + DR++ +Y+G+ V G
Sbjct: 203 IQAQILQLIKVLQKEMSMGV---------IFITHDMGVVAEIADRVLVMYQGEAVETGSV 253
Query: 328 HE-FTSSSNPIVQ 339
+ F + +P +
Sbjct: 254 EQIFHAPQHPYTR 266
|
Length = 623 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-15
Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 52/235 (22%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--KG 146
+++ +N++ S E IL+G++ I GE I+GP+G+GKST+ K+IAG A +G
Sbjct: 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG 64
Query: 147 EVYIRGRKRAGLISD---EEISGLRIGLVFQSAALFDSLTVRENVGFL-LYENSKMRDEQ 202
++ +G I D EE + L I L FQ ++ N FL L NSK + +
Sbjct: 65 DILFKGES----ILDLEPEERAHLGIFLAFQYPIEIPGVS---NADFLRLAYNSKRKFQG 117
Query: 203 ISEL--------VKENLAAVGLKGVEDRLPSEL--------SGGMKKRVALARSIIFDNT 246
+ EL + E L VG+ PS L SGG KKR + + + D
Sbjct: 118 LPELDPLEFLEIINEKLKLVGMD------PSFLSRNVNEGFSGGEKKRNEILQMALLD-- 169
Query: 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
E+ + DE +GLD D ++ + +G N L N S +++TH
Sbjct: 170 -----SELAILDETDSGLDI-------DALKII-AEGINKLMTSEN--SIILITH 209
|
Length = 252 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 2e-15
Identities = 67/243 (27%), Positives = 99/243 (40%), Gaps = 70/243 (28%)
Query: 95 RNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153
V K +K IL+ +S G +G++G +G GKST+L+I+AG+ +GE
Sbjct: 10 NRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPA-- 67
Query: 154 KRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV--GFL-----------LYENSKMRD 200
G+++G + Q L TVRENV G +Y D
Sbjct: 68 -----------PGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPD 116
Query: 201 EQISELVKEN------LAAVGLKGVED---------RLP------SELSGGMKKRVALAR 239
L E + A ++ R P ++LSGG ++RVAL R
Sbjct: 117 ADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCR 176
Query: 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN-PGNIASYVV 298
++ +P++LL DEPT LD A + V L E L + PG + V
Sbjct: 177 LLL-------EKPDMLLLDEPTNHLD--AES-VAWL--------EQFLHDYPGTV---VA 215
Query: 299 VTH 301
VTH
Sbjct: 216 VTH 218
|
Length = 556 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-15
Identities = 63/230 (27%), Positives = 112/230 (48%), Gaps = 26/230 (11%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
E H + VSF + GE + ++G SG+GKST + + L+ GE+ G+ R +S
Sbjct: 336 EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQ-RIDTLSPG 394
Query: 163 EISGLR--IGLVFQSAALFDSLTVRENVGFLLYE----NSKMRDEQISELVKENLAAVGL 216
++ LR I +FQ + SL R+ VG + E + + + + V L VGL
Sbjct: 395 KLQALRRDIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL 452
Query: 217 KGVED-RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
R P E SGG ++R+ +AR++ ++ P+V++ DE + LD + +L
Sbjct: 453 LPEHAWRYPHEFSGGQRQRICIARAL-------ALNPKVIIADEAVSALDVSIRGQIINL 505
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ + + + G+A Y+ ++H + + R R+ +Y G+IV G
Sbjct: 506 LLDLQR--DFGIA-------YLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 60/237 (25%), Positives = 112/237 (47%), Gaps = 39/237 (16%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR- 168
++F + G+ + ++GPSG GK+++L + G L P +G + I G + + + + R
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIE----LRELDPESWRK 423
Query: 169 -IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE- 226
+ V Q+ L T+R+NV L N DEQ+ + ++ + L + L +
Sbjct: 424 HLSWVGQNPQLPHG-TLRDNV---LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479
Query: 227 ------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST-VVEDLIRSV 279
LS G +R+ALAR+++ ++LL DEPTA LD + V++ L +
Sbjct: 480 GDQAAGLSVGQAQRLALARALLQP-------CQLLLLDEPTASLDAHSEQLVMQALNAAS 532
Query: 280 HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNP 336
++ + ++VTHQ + D++ + +G+IV QG E + +
Sbjct: 533 RRQ------------TTLMVTHQLEDL-AQWDQIWVMQDGQIVQQGDYAELSQAGGL 576
|
Length = 588 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 62/201 (30%), Positives = 105/201 (52%), Gaps = 20/201 (9%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGE 147
L++ +N+ K+FG L VS K+R GE V + G +G GKST++K+++G+ P +GE
Sbjct: 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGE 63
Query: 148 VYIRGRK-RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE---NSKMRDEQI 203
+ G + +A I D E +G I ++ Q AL L+V EN+ FL E M + +
Sbjct: 64 IIFEGEELQASNIRDTERAG--IAIIHQELALVKELSVLENI-FLGNEITPGGIMDYDAM 120
Query: 204 SELVKENLAAVGLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
++ LA + L + P L G ++ V +A+++ + + +L+ DEPTA
Sbjct: 121 YLRAQKLLAQLKL-DINPATPVGNLGLGQQQLVEIAKAL-------NKQARLLILDEPTA 172
Query: 263 GLDPIASTVVEDLIRSVHKKG 283
L + V+ D+IR + G
Sbjct: 173 SLTESETAVLLDIIRDLKAHG 193
|
Length = 506 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 7e-15
Identities = 56/237 (23%), Positives = 105/237 (44%), Gaps = 36/237 (15%)
Query: 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158
++ +R VSF +R GE +GI G G G++ + + + G GE+ + G+
Sbjct: 267 RNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIR 326
Query: 159 ISDEEISGLRIGLV---FQSAALFDSLTVRENV---------GFLLYENSKMRDEQISEL 206
+ I I V +S L +++ EN+ L + K R L
Sbjct: 327 SPRDAIK-AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKER-----AL 380
Query: 207 VKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ + + +K ++ LSGG +++V LAR + + +P+VL+ DEPT G+D
Sbjct: 381 AERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWL-------ATDPKVLILDEPTRGID 433
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
A + LIR + +G + ++++ + + DR++ + EG+IV
Sbjct: 434 VGAKAEIYRLIRELAAEG----------KAILMISSELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 8e-15
Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 51/260 (19%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
LI + SF + +L I E V ++G +G GKST++KI+ G + D G +
Sbjct: 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62
Query: 151 RG------------RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF-----LLY 193
R G + D ++ G+ Q+ L + V L
Sbjct: 63 EQDLIVARLQQDPPRNVEGTVYDF-VAE---GIEEQAEYLKRYHDISHLVETDPSEKNLN 118
Query: 194 ENSKMRDE-------QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246
E +K++++ Q+ + E LA +GL D S LSGG ++ AL R+++
Sbjct: 119 ELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALV---- 172
Query: 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306
P+VLL DEPT LD +E +++ +G S + ++H S I
Sbjct: 173 ---SNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QG-----------SIIFISHDRSFI 216
Query: 307 RRAVDRLIFLYEGKIV-WQG 325
R R++ L GK+V + G
Sbjct: 217 RNMATRIVDLDRGKLVSYPG 236
|
Length = 635 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 57/236 (24%), Positives = 104/236 (44%), Gaps = 29/236 (12%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
++ VSF++R GE VGI G +G G+S +++ I+GL P G + + G+ G +S E
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333
Query: 167 LRIGLV----FQSAALFDSLTVRENVGFLLYENSKM------RDEQISELVKENLAAVGL 216
L + V + D L++ EN+ ++ I + +E + +
Sbjct: 334 LGLAYVPEDRHGHGLVLD-LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV 392
Query: 217 KGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
+ P LSGG ++++ LAR + P++L+ +PT GLD A + +
Sbjct: 393 RAPSPDAPARSLSGGNQQKLILARELARR-------PDLLIAAQPTRGLDVGAIEFIHER 445
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331
+ + G+ A ++ + + DR+ +YEG+IV E T
Sbjct: 446 LLELRDAGK---------AVLLISEDLDEILELS-DRIAVIYEGRIVGIVPPEEAT 491
|
Length = 501 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 1e-14
Identities = 72/255 (28%), Positives = 119/255 (46%), Gaps = 37/255 (14%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKS-TILKIIAGLLAPDKGEVYIRGRKR-AG--- 157
+ ++ VS +I GE + ++G SG+GKS T L I+ L P VY G R G
Sbjct: 21 VRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILR--LLPSPPVVYPSGDIRFHGESL 78
Query: 158 LISDEE----ISGLRIGLVFQSAALFDSLTVRENVGFLLYE----NSKMRDEQISELVKE 209
L + E+ + G +I ++FQ + SL + LYE + MR E +
Sbjct: 79 LHASEQTLRGVRGNKIAMIFQEPMV--SLNPLHTLEKQLYEVLSLHRGMRREAARGEILN 136
Query: 210 NLAAVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
L VG++ RL P +LSGG ++RV +A +++ PE+L+ DEPT LD
Sbjct: 137 CLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL-------TRPELLIADEPTTALDV 189
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326
+ L+R + + E + + +TH S +R+ DR+ + G+ V Q
Sbjct: 190 SVQAQILQLLREL--QQELNM-------GLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
Query: 327 THE-FTSSSNPIVQQ 340
F++ ++P Q+
Sbjct: 241 AATLFSAPTHPYTQK 255
|
Length = 529 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 81/279 (29%), Positives = 135/279 (48%), Gaps = 61/279 (21%)
Query: 80 TLF-----EPEDD----------GDVLIDCRNVYKSFGEKHI--LRGVSFKIRHGEAVGI 122
TLF E E D GD I+ RNV ++ K + LR ++FKI G+ V +
Sbjct: 317 TLFAILDLEQEKDEGKRVIERAKGD--IEFRNVTFTYPGKEVPALRNINFKIPAGKTVAL 374
Query: 123 IGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFD 180
+G SG+GKSTI ++ D+GE+ + G + D ++ LR + LV Q+ LF+
Sbjct: 375 VGRSGSGKSTIANLLTRFYDIDEGEILLDGHD----LRDYTLASLRNQVALVSQNVHLFN 430
Query: 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-------LSGGMKK 233
T+ N+ + + EQI E + A + +++ L + LSGG ++
Sbjct: 431 D-TIANNIAYA--RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487
Query: 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV---HKKGENGLANP 290
R+A+AR+++ D+ +L+ DE T+ LD T E I++ +K L
Sbjct: 488 RIAIARALLRDSP-------ILILDEATSALD----TESERAIQAALDELQKNRTSL--- 533
Query: 291 GNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
V+ H+ STI +A D ++ + +G+IV +G TH
Sbjct: 534 -------VIAHRLSTIEKA-DEILVVEDGEIVERG-THA 563
|
Length = 582 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 4e-14
Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 38/187 (20%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L +SF I G+ VG++G +G+GKST+L LL + G++ I G +S +
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDG------VSWNSVP 71
Query: 166 GLR----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED 221
+ G++ Q +F S T R+N L K DE+I ++ +E VGLK V +
Sbjct: 72 LQKWRKAFGVIPQKVFIF-SGTFRKN----LDPYGKWSDEEIWKVAEE----VGLKSVIE 122
Query: 222 RLPSE-----------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
+ P + LS G K+ + LARS++ + ++LL DEP+A LDPI
Sbjct: 123 QFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL-------SKAKILLLDEPSAHLDPITYQ 175
Query: 271 VVEDLIR 277
V+ ++
Sbjct: 176 VIRKTLK 182
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 5e-14
Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 17/173 (9%)
Query: 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173
+R GE G++G +G GK+T K++ G G+ + G+ ISD + +G
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN---MGYCP 2018
Query: 174 QSAALFDSLTVRENVGFLLYENSKMR---DEQISELVKENLAAVGLKGVEDRLPSELSGG 230
Q A+ D LT RE+ LY +++R E+I ++ ++ ++GL DRL SGG
Sbjct: 2019 QFDAIDDLLTGREH----LYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGG 2074
Query: 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
K++++ A ++I P ++L DEPT G+DP A ++ + I S+ ++G
Sbjct: 2075 NKRKLSTAIALIGC-------PPLVLLDEPTTGMDPQARRMLWNTIVSIIREG 2120
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 5e-14
Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 31/231 (13%)
Query: 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170
S ++R GE + ++GP+G GKST+L +AG+ G + G + S E++ R
Sbjct: 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAG-QPLEAWSATELARHRAY 76
Query: 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP---SEL 227
L Q F ++ V + L++ K R E ++++ G ++D+L ++L
Sbjct: 77 LSQQQTPPF-AMPVWHYLT--LHQPDKTRTELLNDV-------AGALALDDKLGRSTNQL 126
Query: 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGL 287
SGG +RV LA ++ + ++LL DEP LD +A D R + + GL
Sbjct: 127 SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD-VAQQSALD--RLLSALCQQGL 183
Query: 288 ANPGNIASYVVVTHQHS---TIRRAVDRLIFLYEGKIVWQGMTHEFTSSSN 335
A +V H T+R A R L GK++ G E +
Sbjct: 184 A---------IVMSSHDLNHTLRHA-HRAWLLKRGKLLASGRREEVLTPPV 224
|
Length = 248 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 6e-14
Identities = 69/240 (28%), Positives = 106/240 (44%), Gaps = 30/240 (12%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL----APD----KGEVYIRGRKRAG 157
ILR +S +I G ++G +G GKST+LK +AG L AP G+V + G A
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 158 LISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK------MRDEQISELVKENL 211
I ++ LR L + F + + RE V Y +++ RD +I+ + L
Sbjct: 76 -IDAPRLARLRAVLPQAAQPAF-AFSAREIVLLGRYPHARRAGALTHRDGEIAW---QAL 130
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSI--IFDNTKESVEPEVLLYDEPTAGLDPIAS 269
A G + R + LSGG RV AR + ++ + P LL DEPTA LD
Sbjct: 131 ALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ D +R + + G+ + + H + R DR+ L +G IV G +
Sbjct: 191 HRLLDTVRRLARDWNLGV---------LAIVHDPNLAARHADRIAMLADGAIVAHGAPAD 241
|
Length = 272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 7e-14
Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 71 DSSKSENVN-TLFEPEDDGDVLIDC-RNVYKSF---GEKHILRGVSFKIRHGEAVGIIGP 125
D E +N + FE E G V C +N+ K F G + R ++ + +G
Sbjct: 906 DPEHPEGINDSFFERELPGLVPGVCVKNLVKIFEPSGRPAVDR-LNITFYENQITAFLGH 964
Query: 126 SGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185
+G GK+T L I+ GLL P G V + G+ + ++ + +G+ Q LF LTV
Sbjct: 965 NGAGKTTTLSILTGLLPPTSGTVLVGGKD---IETNLDAVRQSLGMCPQHNILFHHLTVA 1021
Query: 186 ENVGFLLYENSKMRDEQISELVKEN-LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244
E++ L Y K R + ++L E L GL + +LSGGM++++++A + + D
Sbjct: 1022 EHI--LFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
+V++ DEPT+G+DP + + DL+
Sbjct: 1080 A-------KVVVLDEPTSGVDPYSRRSIWDLL 1104
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-14
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 41/219 (18%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L+ VSFK++ GE +GI+G +G GKST++ + L ++G++ I G IS +
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID----ISTIPLE 78
Query: 166 GLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
LR + ++ Q LF T+R N L + DE+I ++ V G
Sbjct: 79 DLRSSLTIIPQDPTLFSG-TIRSN----LDPFDEYSDEEIYGALR-----VSEGG----- 123
Query: 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
LS G ++ + LAR+++ P VL+ DE TA +D +++ IR
Sbjct: 124 -LNLSQGQRQLLCLARALL-------KRPRVLVLDEATASIDYATDALIQKTIREEFTN- 174
Query: 284 ENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
++ + + H+ TI D+++ + G++
Sbjct: 175 ----------STILTIAHRLRTI-IDYDKILVMDAGEVK 202
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 9e-14
Identities = 70/280 (25%), Positives = 133/280 (47%), Gaps = 58/280 (20%)
Query: 84 PEDDGDVLIDCRNVYKSF---GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140
P + G I +N Y S+ E+ L ++ + G V I+G +G GK++++ + G
Sbjct: 607 PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE 666
Query: 141 LAP-DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF-LLYENSKM 198
L P V IRG + V Q + +F++ TVR+N+ F ++ +
Sbjct: 667 LPPRSDASVVIRG---------------TVAYVPQVSWIFNA-TVRDNILFGSPFDPERY 710
Query: 199 -RDEQISELVKE-------NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250
R ++ L + +L +G +GV +SGG K+RV++AR++ ++
Sbjct: 711 ERAIDVTALQHDLDLLPGGDLTEIGERGV------NISGGQKQRVSMARAVYSNS----- 759
Query: 251 EPEVLLYDEPTAGLDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
+V ++D+P + LD + V + I+ + + V+VT+Q + +
Sbjct: 760 --DVYIFDDPLSALDAHVGRQVFDKCIKDELRG-----------KTRVLVTNQLHFLSQ- 805
Query: 310 VDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA--SGSLE 347
VDR+I ++EG I +G T+E S++ P+ Q+ +G +E
Sbjct: 806 VDRIILVHEGMIKEEG-TYEELSNNGPLFQKLMENAGKME 844
|
Length = 1622 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-13
Identities = 61/199 (30%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
LR SF + G ++G +G+GKST+ K + G + G++ I G+ + + +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQP-----TRQALQK 77
Query: 167 LRIGLVFQSAALFDSLTVR-ENV---------GFLLYENSKMRDEQISELVKENLAAVGL 216
+ V QS + S V E+V G+L +K RD QI V LA V +
Sbjct: 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWL--RRAKKRDRQI---VTAALARVDM 132
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
R ELSGG KKRV LAR+I +V+L DEP G+D + L+
Sbjct: 133 VEFRHRQIGELSGGQKKRVFLARAIAQQG-------QVILLDEPFTGVDVKTEARIISLL 185
Query: 277 RSVHKKGENGLANPGNIAS 295
R + +G+ L + N+ S
Sbjct: 186 RELRDEGKTMLVSTHNLGS 204
|
Length = 272 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 70/267 (26%), Positives = 112/267 (41%), Gaps = 43/267 (16%)
Query: 68 KFNDSSKSENVNTLFEPEDDGD-VLIDCRNVYKSFG------EKHILRGVSFKIRHGEAV 120
K K +NV F E D + + +++ +SFG E+++LR ++ +I+ G+ V
Sbjct: 353 KLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVV 412
Query: 121 GIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180
++G SG GK+T+L++I G +GE R + +S L G F
Sbjct: 413 AVVGQSGAGKTTLLRMILG-AQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPE---FG 468
Query: 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-----RLPSELSGGMKKRV 235
+T+ E++ SK D + + + G+ D R SELS G K+R
Sbjct: 469 EVTILEHLR------SKTGD------LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERA 516
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295
LA+ + + P VLL DE A LD + + V R + + LA I
Sbjct: 517 KLAKLL-------AERPNVLLIDEFAAHLDELTAVRV---ARKISE-----LAREAGITL 561
Query: 296 YVVVTHQHSTIRRAVDRLIFLYEGKIV 322
VV D LI + GK+
Sbjct: 562 IVVTHRPEVGNALRPDTLILVGYGKVP 588
|
Length = 593 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-13
Identities = 68/236 (28%), Positives = 109/236 (46%), Gaps = 25/236 (10%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
RNV + +L +S G+ G+IG +G+GKST+LK++ P +GE+ + +
Sbjct: 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQP 74
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY----ENSKMRDEQISELVKEN 210
+ ++ + Q + +TVRE V Y + E V+E
Sbjct: 75 LESW--SSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAAD-REKVEEA 131
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
++ VGLK + RL LSGG ++R +A + D+ LL DEPT+ LD IA
Sbjct: 132 ISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDS-------RCLLLDEPTSALD-IAHQ 183
Query: 271 VVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
V D++ VH+ E GL + + V H + R D L+ L G+++ QG
Sbjct: 184 V--DVLALVHRLSQERGL-------TVIAVLHDINMAARYCDYLVALRGGEMIAQG 230
|
Length = 265 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 3e-13
Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 36/235 (15%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYIRGRKRAGLISD 161
++ GVS ++ G + ++G SG+GKS G+L G V + G+ A
Sbjct: 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP---- 73
Query: 162 EEISGLRIGLVFQ---SAALFDSL-TVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217
+ G +I + Q SA F+ L T+ + K D+ + L AVGL+
Sbjct: 74 CALRGRKIATIMQNPRSA--FNPLHTMHTHARETCLALGKPADDA---TLTAALEAVGLE 128
Query: 218 GVE---DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274
P E+SGGM +R+ +A +++ E ++ DEPT LD +A + D
Sbjct: 129 NAARVLKLYPFEMSGGMLQRMMIALALL-------CEAPFIIADEPTTDLDVVAQARILD 181
Query: 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
L+ S+ +K G+ ++VTH + R D + + G+IV QG
Sbjct: 182 LLESIVQKRALGM---------LLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227
|
Length = 254 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 43/250 (17%)
Query: 92 IDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
ID NV ++ + +L+ ++ + V ++G +G+GKST+ ++ G +GE+ +
Sbjct: 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400
Query: 151 RGRKRAGLISDEEISGLRIGL-------VFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
GR + L S LR G+ V + ++T+ ++ S+ + Q
Sbjct: 401 DGRPLSSLSH----SVLRQGVAMVQQDPVVLADTFLANVTLGRDI-------SEEQVWQA 449
Query: 204 SELVKENLAAVGL-KGVEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
E V+ A L G+ L + LS G K+ +ALAR ++ P++L+ DE
Sbjct: 450 LETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ-------TPQILILDE 502
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319
TA +D ++ + +V + + VV+ H+ STI A D ++ L+ G
Sbjct: 503 ATANIDSGTEQAIQQALAAVREH-----------TTLVVIAHRLSTIVEA-DTILVLHRG 550
Query: 320 KIVWQGMTHE 329
+ V QG TH+
Sbjct: 551 QAVEQG-THQ 559
|
Length = 592 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 6e-13
Identities = 58/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 92 IDCRNVYKSFGEKHILRG-VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ RNV ++ + G ++ I+ GE V +IG +G+GKST+ ++ GL P GE+ +
Sbjct: 323 LELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G+ +S E++ R VF LFD L E Q+ E
Sbjct: 383 DGK----PVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKA----------SPQLIEKWL 428
Query: 209 ENLAAVGLKGVEDR--LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
+ L + D +LS G KKR+AL +++ E ++L+ DE A DP
Sbjct: 429 QRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALL-------EERDILVLDEWAADQDP 481
Query: 267 IASTVV-EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ L+ + ++G+ + ++H A DRL+ + G++
Sbjct: 482 AFRREFYQVLLPLLKEQGK----------TIFAISHDDHYFIHA-DRLLEMRNGQLSELT 530
Query: 326 MTHEFTSSSNPI 337
++ + +
Sbjct: 531 GEERDETARDAV 542
|
Length = 546 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 7e-13
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 67/202 (33%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFK-------IRHGEAVGIIGPSGTGKSTILK 135
E + + L++ ++ K G+ F I GE +GI+GP+G GK+T K
Sbjct: 332 RDESERETLVEYPDLTKKLGD--------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAK 383
Query: 136 IIAGLLAPDKGEV-----------YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV 184
++AG+L PD+GEV YI+ D + TV
Sbjct: 384 LLAGVLKPDEGEVDPELKISYKPQYIK--------PDYDG------------------TV 417
Query: 185 RENVGFLLYENSKMRDEQI-SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243
+ L + SE++K + L+ + D+ +LSGG +RVA+A +
Sbjct: 418 ED---LLRSITDDLGSSYYKSEIIK----PLQLERLLDKNVKDLSGGELQRVAIAACL-- 468
Query: 244 DNTKESVEPEVLLYDEPTAGLD 265
S + ++ L DEP+A LD
Sbjct: 469 -----SRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 1e-12
Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 38/186 (20%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
+ +L+ +SF + G+ VG++G +G+GKST+L + LL+ + GE+ I G +S
Sbjct: 1230 AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDG------VSW 1282
Query: 162 EEISGLR----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217
++ G++ Q +F S T R+N L + DE+I ++ +E VGLK
Sbjct: 1283 NSVTLQTWRKAFGVIPQKVFIF-SGTFRKN----LDPYEQWSDEEIWKVAEE----VGLK 1333
Query: 218 GVEDRLPSE-----------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
V ++ P + LS G K+ + LARSI+ + ++LL DEP+A LDP
Sbjct: 1334 SVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL-------SKAKILLLDEPSAHLDP 1386
Query: 267 IASTVV 272
+ ++
Sbjct: 1387 VTLQII 1392
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 26/192 (13%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
PE G++ ++ R + L V+F ++ G+ +GI GP+G+GKST+L +I
Sbjct: 308 PEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV 367
Query: 144 DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI 203
+G++ L D S R+ +V Q+ LF S TV N+ + ++ E +
Sbjct: 368 SEGDIRFHDIPLTKLQLDSWRS--RLAVVSQTPFLF-SDTVANNIALGRPDATQQEIEHV 424
Query: 204 SEL--VKENL--------AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
+ L V +++ VG +GV LSGG K+R+++AR+++ + E
Sbjct: 425 ARLASVHDDILRLPQGYDTEVGERGV------MLSGGQKQRISIARALLLN-------AE 471
Query: 254 VLLYDEPTAGLD 265
+L+ D+ + +D
Sbjct: 472 ILILDDALSAVD 483
|
Length = 569 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 45/217 (20%)
Query: 67 TKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYK-SF--------GEKHILRGVSFKIRHG 117
+F + ++ ++T + D + + + +L ++F++R G
Sbjct: 360 AEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPG 419
Query: 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177
E + I G SG GK+++L+ +AGL + G R + +D + L
Sbjct: 420 ERLLITGESGAGKTSLLRALAGL--------WPWGSGRISMPADSAL------LFLPQRP 465
Query: 178 LFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLK------GVEDRLPSELSG 229
T+RE L Y N+ D ++ + L VGL EDR LSG
Sbjct: 466 YLPQGTLRE---ALCYPNAAPDFSDAELVAV----LHKVGLGDLAERLDEEDRWDRVLSG 518
Query: 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
G ++R+A AR ++ K P+ + DE T+ LD
Sbjct: 519 GEQQRLAFARLLL---HK----PKWVFLDEATSALDE 548
|
Length = 604 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 42/210 (20%)
Query: 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172
+I GE +GI+GP+G GK+T +K++AG++ PD+G L++
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE----------------EDLKVSYK 406
Query: 173 FQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA-VGLKGVEDRLPSELSGG 230
Q + +D TV + LL S +R S K + + L+ + +R ELSGG
Sbjct: 407 PQYISPDYDG-TVED----LLR--SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGG 459
Query: 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANP 290
+RVA+A ++ S E ++ L DEP+A LD +V +IR + E
Sbjct: 460 ELQRVAIAAAL-------SREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNE------ 506
Query: 291 GNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
+ +VV H I DRLI ++EG+
Sbjct: 507 ---KTALVVDHDIYMIDYVSDRLI-VFEGE 532
|
Length = 591 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 3e-12
Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 26/219 (11%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++D + + ++ +L+ +SF + G + + G +G GK+T+LK+IAGLL P+KGE+
Sbjct: 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
+ + D ++ V + + LT+REN + ++ + I+EL +
Sbjct: 61 ERQS---IKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPG--AVGITELCR-- 113
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
L+ + D LS G K++VAL R + + ++ L DEP LD ++
Sbjct: 114 --LFSLEHLIDYPCGLLSSGQKRQVALLRLWM-------SKAKLWLLDEPLVALDELSLL 164
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
+ I+ KG + ++ +HQ + +A
Sbjct: 165 TIITKIQEHRAKG----------GAVLLTSHQDLPLNKA 193
|
Length = 200 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 4e-12
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V++ V +G+ L VS I GE V +IG +G GK+T+L + G G +
Sbjct: 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV 63
Query: 150 IRGRKRAGLISDEEISGL---RIGLVFQSAALFDSLTVRENVG----FLLYENSKMRDEQ 202
G+ I+D + + + + +V + +F +TV EN+ F + + R +
Sbjct: 64 FDGKD----ITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW 119
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
+ EL L + +SGG ++ +A+ R+++ +P +LL DEP+
Sbjct: 120 VYELFPR------LHERRIQRAGTMSGGEQQMLAIGRALM-------SQPRLLLLDEPSL 166
Query: 263 GLDPIASTVVEDLIRSVHKKG 283
GL PI + D I + ++G
Sbjct: 167 GLAPIIIQQIFDTIEQLREQG 187
|
Length = 237 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 41/241 (17%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
PE + L+ V +G++ IL + + G +G++G +G GKST++K++AG LA
Sbjct: 304 APESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA 363
Query: 143 PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
P GE+ GL G+++G Q F L E+ L +++ ++
Sbjct: 364 PVSGEI--------GL-----AKGIKLGYFAQHQLEF--LRADESP---LQHLARLAPQE 405
Query: 203 ISELVKENLAAVGLKGVEDRLPSE-LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
+ + +++ L G +G + + SGG K R+ LA I++ P +LL DEPT
Sbjct: 406 LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLAL-IVWQ------RPNLLLLDEPT 458
Query: 262 AGLD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
LD + + E LI E L VVV+H +R D L +++GK
Sbjct: 459 NHLDLDMRQALTEALI-----DFEGAL---------VVVSHDRHLLRSTTDDLYLVHDGK 504
Query: 321 I 321
+
Sbjct: 505 V 505
|
Length = 638 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 6e-12
Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 38/208 (18%)
Query: 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173
I E +GI+GP+G GK+T +K++AG+L PD+G D EI +
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG--------------DIEIELDTVSYKP 67
Query: 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA-AVGLKGVEDRLPSELSGGMK 232
Q TVR+ LL S +D K +A + ++ + DR ELSGG
Sbjct: 68 QYIKADYEGTVRD----LLS--SITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGEL 121
Query: 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGN 292
+RVA+A + S + ++ L DEP+A LD + +IR + E
Sbjct: 122 QRVAIAACL-------SKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE-------- 166
Query: 293 IASYVVVTHQHSTIRRAVDRLIFLYEGK 320
+ VV H I DRLI ++EG+
Sbjct: 167 -KTAFVVEHDIIMIDYLADRLI-VFEGE 192
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 6e-12
Identities = 76/267 (28%), Positives = 126/267 (47%), Gaps = 39/267 (14%)
Query: 89 DVLIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144
D L+D +++ +F G+ + ++F +R GE +GI+G SG+GKS + GLLA +
Sbjct: 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 69
Query: 145 ---KGEVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGFLLYE---- 194
G GR+ L ++E++ LR I ++FQ SL VG L E
Sbjct: 70 GRIGGSATFNGREILNL-PEKELNKLRAEQISMIFQDP--MTSLNPYMRVGEQLMEVLML 126
Query: 195 NSKM-RDEQISELVKENLAAVGLKGVEDRL---PSELSGGMKKRVALARSIIFDNTKESV 250
+ M + E E V+ L AV + R+ P E SGGM++RV +A +++
Sbjct: 127 HKGMSKAEAFEESVRM-LDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALL-------C 178
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310
P++L+ DEPT LD + L+ N L N A +++TH +
Sbjct: 179 RPKLLIADEPTTALDVTVQAQIMTLL--------NELKREFNTA-IIMITHDLGVVAGIC 229
Query: 311 DRLIFLYEGKIVWQGMTHE-FTSSSNP 336
D+++ +Y G+ + G + F S+P
Sbjct: 230 DKVLVMYAGRTMEYGNARDVFYQPSHP 256
|
Length = 330 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-12
Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 42/228 (18%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+ + ++F I + ++GP+G GKSTILK+I+G L P G V+ + R + S +
Sbjct: 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVD 583
Query: 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPS 225
GL + + LLY + + ++ +L + G+ G P
Sbjct: 584 GLDL-----------------SSNPLLYM-MRCFPGVPEQKLRAHLGSFGVTGNLALQPM 625
Query: 226 -ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
LSGG K RVA A+ I F +P +LL DEP+ LD A VE LI+
Sbjct: 626 YTLSGGQKSRVAFAK-ITFK------KPHILLLDEPSNHLDLDA---VEALIQ------- 668
Query: 285 NGLA-NPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV-WQGMTHEF 330
GL G + ++V+H I +VD L + EGK+ + G H++
Sbjct: 669 -GLVLFQGGV---LMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712
|
Length = 718 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 8e-12
Identities = 70/259 (27%), Positives = 120/259 (46%), Gaps = 59/259 (22%)
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
K +LR VS + G+ ++G +G+GKST+L+ + +G V+ E
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW------------AE 720
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYEN-SKMRDE-QISELVKENLAA-------- 213
S I V Q A + ++ TVR N+ F E+ +++ D ++S+L + +LA
Sbjct: 721 RS---IAYVPQQAWIMNA-TVRGNILFFDEEDAARLADAVRVSQL-EADLAQLGGGLETE 775
Query: 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IASTVV 272
+G KGV LSGG K RV+LAR++ + +V L D+P + LD + VV
Sbjct: 776 IGEKGV------NLSGGQKARVSLARAVYANR-------DVYLLDDPLSALDAHVGERVV 822
Query: 273 EDLIRSVHKKGENGLANPGNIA--SYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
E+ G +A + V+ THQ + RA D ++ L +G++ + G + +F
Sbjct: 823 EECFL-------------GALAGKTRVLATHQVHVVPRA-DYVVALGDGRVEFSGSSADF 868
Query: 331 TSSSNPIVQQFASGSLEGP 349
+ + A+ E
Sbjct: 869 MRT--SLYATLAAELKENK 885
|
Length = 1560 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-11
Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 55/239 (23%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIR 151
K + IL+ S ++ GE V ++G G+G ST+LK +A + +G++
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI--- 67
Query: 152 GRKRAGLISDEEISGLRIGLVF--QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
G+ E +++ + F +LTVRE + F L + + +
Sbjct: 68 --HYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL----RCKGNEF------ 115
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
++G+ SGG +KRV++A +++ VL +D T GLD +S
Sbjct: 116 ------VRGI--------SGGERKRVSIAEALV-------SRASVLCWDNSTRGLD--SS 152
Query: 270 TVVEDL--IRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLIFLYEGKIVWQG 325
T +E L IR++ + + V +Q S I D+++ LYEG+ ++ G
Sbjct: 153 TALEILKCIRTMADVLK---------TTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 64/193 (33%), Positives = 90/193 (46%), Gaps = 55/193 (28%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+LRGVSF+I E VGI+G +G+GKST+L ++ GE+ + GR EI
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGR---------EIG 1375
Query: 166 --GLR-----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218
GLR ++ Q LFD TVR+NV L +S E AA+ L G
Sbjct: 1376 AYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFLEASS-----------AEVWAALELVG 1423
Query: 219 VEDRLPSELSGGMKKRV---------------ALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ +R+ SE S G+ RV +AR+++ K S +L DE TA
Sbjct: 1424 LRERVASE-SEGIDSRVLEGGSNYSVGQRQLMCMARALL---KKGS---GFILMDEATAN 1476
Query: 264 LDP-----IASTV 271
+DP I +TV
Sbjct: 1477 IDPALDRQIQATV 1489
|
Length = 1560 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 76/263 (28%), Positives = 120/263 (45%), Gaps = 64/263 (24%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS-DEEI 164
+LR V+ R G ++G SG GK+T++ ++A GRK G I D I
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLA-------------GRKTGGYIEGDIRI 941
Query: 165 SGL--------RI-GLVFQSAALFDSLTVRENV---GFL-----LYENSKMR-DEQISEL 206
SG RI G Q+ +TVRE++ FL + + KM +++ EL
Sbjct: 942 SGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMEL 1001
Query: 207 VK-ENL--AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
V+ +NL A VGL GV + LS +KR+ +A ++ P ++ DEPT+G
Sbjct: 1002 VELDNLKDAIVGLPGV-----TGLSTEQRKRLTIAVELV-------ANPSIIFMDEPTSG 1049
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT-HQHST-IRRAVDRLIFLYE-GK 320
LD A+ +V +R+ G VV T HQ S I A D L+ + G+
Sbjct: 1050 LDARAAAIVMRTVRNTVDTGRT-----------VVCTIHQPSIDIFEAFDELLLMKRGGQ 1098
Query: 321 IVWQGMTHEFTSSSNPIVQQFAS 343
+++ G +S+ I++ F +
Sbjct: 1099 VIYSG---PLGRNSHKIIEYFEA 1118
|
Length = 1470 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-11
Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 33/248 (13%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEV 148
++ ++++ S +K ILRG++ ++R GE I+GP+G+GKST+ +AG G V
Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ------ 202
+G+ L S E+ +G I + FQ ++ + + L R ++
Sbjct: 61 EFKGKDLLEL-SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFD 119
Query: 203 ISELVKENLAAVGLKGVEDRLPSEL----SGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
+L++E +A LK ED L + SGG KKR + + +EPE+ + D
Sbjct: 120 FQDLMEEKIAL--LKMPEDLLTRSVNVGFSGGEKKRNDILQ-------MAVLEPELCILD 170
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR-AVDRLIFLY 317
E +GLD A +V D G N L + S+++VTH + D + LY
Sbjct: 171 ESDSGLDIDALKIVAD--------GVNSLRDGKR--SFIIVTHYQRILDYIKPDYVHVLY 220
Query: 318 EGKIVWQG 325
+G+IV G
Sbjct: 221 QGRIVKSG 228
|
Length = 248 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 72/282 (25%), Positives = 118/282 (41%), Gaps = 61/282 (21%)
Query: 64 FPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNV-----YKSFGEKHILRGVSFKIRHGE 118
+T D S N + ++ G+ + RN+ K ++ IL V ++ G
Sbjct: 733 LGSTDLTDESDDVN-DEKDMEKESGEDIFHWRNLTYEVKIKK-EKRVILNNVDGWVKPGT 790
Query: 119 AVGIIGPSGTGKSTILKIIAGLLAP---DKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175
++G SG GK+T+L ++A + G+ + GR D IG V Q
Sbjct: 791 LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPL-----DSSFQ-RSIGYVQQQ 844
Query: 176 AALFDSLTVRENVGFLLY--------ENSKMR--DEQISELVKENL--AAVGLKG----V 219
+ TVRE++ F Y ++ KM +E I L E+ A VG+ G V
Sbjct: 845 DLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNV 904
Query: 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY-DEPTAGLDPIASTVVEDLIRS 278
E R KR+ + ++ +P++LL+ DEPT+GLD + + L+R
Sbjct: 905 EQR----------KRLTIGVELV-------AKPKLLLFLDEPTSGLDSQTAWSICKLMRK 947
Query: 279 VHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLIFLYEG 319
LA+ G + + HQ S + DRL+ L +G
Sbjct: 948 --------LADHGQ--AILCTIHQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 5e-11
Identities = 60/200 (30%), Positives = 89/200 (44%), Gaps = 39/200 (19%)
Query: 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-----------YIRGRKRAGLISDEE 163
R G+ +G++GP+G GKST LKI+AG L P+ G+ RG + +
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE--QISELVKENLAAVGLKGVED 221
+++ + Q L V+ VG LL K +DE ++ ELV + L+ V D
Sbjct: 84 EGDVKVIVKPQYVDLIPK-AVKGKVGELL----KKKDERGKLDELVD----QLELRHVLD 134
Query: 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK 281
R +LSGG +RVA+A ++ D +DEP++ LD LIR
Sbjct: 135 RNIDQLSGGELQRVAIAAALARDAD-------FYFFDEPSSYLDIKQRLNAARLIRE--- 184
Query: 282 KGENGLANPGNIASYVVVTH 301
LA N +VV H
Sbjct: 185 -----LAEDDN--YVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 7e-11
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 47/221 (21%)
Query: 75 SENVN--TLFEPED--------DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIG 124
SE + L EP++ + I N S+ ++ IL +S+++ GE I+G
Sbjct: 234 SEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVG 293
Query: 125 PSGTGKSTILKIIAGLLAPDKGEVY-----IRGRKRAGLISDEEISGLR--IGLVFQSAA 177
P+G GKST+L +I G D + Y + GR+R S E I ++ IG V S
Sbjct: 294 PNGAGKSTLLSLITG----DHPQGYSNDLTLFGRRRG---SGETIWDIKKHIGYVSSSLH 346
Query: 178 LFD---SLTVRENV---GFL----LYENSKMRDEQISELVKENLAAVGL-KGVEDRLPSE 226
L D S +VR NV GF +Y+ R ++ L ++ L +G+ K D
Sbjct: 347 L-DYRVSTSVR-NVILSGFFDSIGIYQAVSDRQQK---LAQQWLDILGIDKRTADAPFHS 401
Query: 227 LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
LS G ++ + R+++ P +L+ DEP GLDP+
Sbjct: 402 LSWGQQRLALIVRALV-------KHPTLLILDEPLQGLDPL 435
|
Length = 490 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 69/211 (32%), Positives = 93/211 (44%), Gaps = 47/211 (22%)
Query: 111 SFKI------RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-----------YIRGR 153
FK+ R G+ VGI+GP+G GKST LKI+AG L P+ G RG
Sbjct: 88 GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGT 147
Query: 154 KRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ--ISELVKENL 211
+ LR Q L + V+ VG LL K DE+ E+V+
Sbjct: 148 ELQNYFKKLYEGELRAVHKPQYVDLIPKV-VKGKVGELL----KKVDERGKFDEVVER-- 200
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+GL+ V DR SELSGG +RVA+A ++ + +V +DEP++ LD
Sbjct: 201 --LGLENVLDRDVSELSGGELQRVAIAAAL-------LRDADVYFFDEPSSYLDIRQRLN 251
Query: 272 VEDLIRSVHKKGENGLANPGNIASYV-VVTH 301
+IR LA G YV VV H
Sbjct: 252 AARVIRE--------LAEDGK---YVIVVEH 271
|
Length = 591 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 56/226 (24%), Positives = 108/226 (47%), Gaps = 31/226 (13%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
+ VSF +R GE +G+ G G G++ ++K++ G L G V + G + +++ G
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHE---VVTRSPQDG 324
Query: 167 LRIGLVFQSA-----ALFDSLTVREN-----VGFLLYENSKMRDEQISELVKENLAAVGL 216
L G+V+ S L ++V+EN + + ++ + V + + +
Sbjct: 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNI 384
Query: 217 KG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
K ++ LSGG +++VA+AR ++ T+ P+VL+ DEPT G+D A + L
Sbjct: 385 KTPSMEQAIGLLSGGNQQKVAIARGLM---TR----PKVLILDEPTRGVDVGAKKEIYQL 437
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
I +G S ++V+ + + DR++ ++EG+I
Sbjct: 438 INQFKAEG----------LSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 30/162 (18%)
Query: 102 GEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160
GE H L +SF++ GE VGIIG +G+GKST+ +IAG+ P+KG V I+G A LI+
Sbjct: 34 GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG--SAALIA 91
Query: 161 DEEISGLRIGLVFQSAALFDSLTVRENV---GFLLYENSKMRDEQISELVKENLAAVGLK 217
S+ L LT EN+ G ++ + E+I E++ E + +
Sbjct: 92 -------------ISSGLNGQLTGIENIELKGLMM----GLTKEKIKEIIPEIIEFADIG 134
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
+ S GMK R+ A S+ + P++L+ DE
Sbjct: 135 KFIYQPVKTYSSGMKSRLGFAISV-------HINPDILVIDE 169
|
Length = 549 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 34/243 (13%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
IL+ + I+ GE ++G G+G ST+LK IA D + + G I+ E
Sbjct: 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNT--DGFHIGVEGVITYDGITPE 130
Query: 163 EISGLRIGLVFQSAAL---FDSLTVRENVGF--------LLYENSKMRDEQISELVKENL 211
EI G V +A F LTV E + F + R+E + +
Sbjct: 131 EIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVS-REEYAKHIADVYM 189
Query: 212 AAVGLK-----GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
A GL V + +SGG +KRV++A + + ++ +D T GLD
Sbjct: 190 ATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL-------GGAKIQCWDNATRGLD- 241
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326
++T +E IR++ AN + V + D++I LYEG ++ G
Sbjct: 242 -SATALE-FIRALKT-----SANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294
Query: 327 THE 329
+
Sbjct: 295 ADK 297
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-10
Identities = 67/240 (27%), Positives = 102/240 (42%), Gaps = 81/240 (33%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
G++ +L +S ++ G ++G SG GK+T+L ++A GRK AG+I+
Sbjct: 18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLA-------------GRKTAGVITG 64
Query: 162 E-EISGL--------RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLA 212
E I+G G V Q +LTVRE + F ++ +R
Sbjct: 65 EILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRF----SALLR------------- 107
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE----PEVLLYDEPTAGLDPIA 268
GL VE R KR+ + VE P +L DEPT+GLD A
Sbjct: 108 --GL-SVEQR----------KRLTIG-----------VELAAKPSILFLDEPTSGLDSQA 143
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVT-HQHS-TIRRAVDRLIFLYE-GKIVWQG 325
+ + +R + K ++G A ++ T HQ S +I DRL+ L GK V+ G
Sbjct: 144 AYNI---VRFLKKLADSGQA--------ILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 30/190 (15%)
Query: 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG- 166
R +S ++R GE +G+ G G G++ + + + GL G + + G+ EI+
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGK---------EINAL 330
Query: 167 -----LRIGLVF-----QSAALFDSLTVRENVGFLLYENSK--MRDEQISELVKENLAAV 214
L GLV+ QS+ L+ + NV L + ++ + + +++ A+
Sbjct: 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRAL 390
Query: 215 GLKGVEDRLPSE-LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273
+K + LSGG +++V +A+ + P++L+ DEPT G+D A +
Sbjct: 391 NIKFNHAEQAARTLSGGNQQKVLIAKCL-------EASPQLLIVDEPTRGVDVSARNDIY 443
Query: 274 DLIRSVHKKG 283
LIRS+ +
Sbjct: 444 QLIRSIAAQN 453
|
Length = 510 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 68/277 (24%), Positives = 118/277 (42%), Gaps = 62/277 (22%)
Query: 83 EPEDDGDVLIDCRNVYK-SFGEKHILR--GVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139
EP + GDV+++ RN+ H R VSF +R GE +G+ G G G++ +++ + G
Sbjct: 249 EPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG 308
Query: 140 LLAPDK--GEVYIRG----------------------RKRAGLISDEEISGLRIGLVFQS 175
P K G V+I G RKR G++ + G I L
Sbjct: 309 AY-PGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGV-GKNITL---- 362
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-SELSGGMKKR 234
++ S + ++ +++ + + +K LP LSGG +++
Sbjct: 363 -SVLKSFCFK----------MRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQK 411
Query: 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294
LA+ ++ + P VL+ DEPT G+D A + LI N LA G
Sbjct: 412 AVLAKMLLTN-------PRVLILDEPTRGVDVGAKYEIYKLI--------NQLAQEG--V 454
Query: 295 SYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331
+ +VV+ + + + DR++ + EGK+ + H T
Sbjct: 455 AIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALT 491
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-10
Identities = 63/273 (23%), Positives = 115/273 (42%), Gaps = 56/273 (20%)
Query: 91 LIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL------ 140
L+D RN+ F G + VS + GE G++G SG+GKS I K I G+
Sbjct: 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWR 62
Query: 141 LAPDKGE------VYIRGRKRAGLISDEEISGLRIGLVFQ--SAALFDSLTVR----ENV 188
+ D+ + + R+R L+ + ++FQ + L S V +N+
Sbjct: 63 VTADRMRFDDIDLLRLSPRERRKLVGHN------VSMIFQEPQSCLDPSERVGRQLIQNI 116
Query: 189 GFLLYENS-----KMRDEQISELVKENLAAVGLKGVEDRL---PSELSGGMKKRVALARS 240
Y+ R + EL L VG+K +D + P EL+ G ++V +A +
Sbjct: 117 PAWTYKGRWWQRFGWRKRRAIEL----LHRVGIKDHKDIMRSYPYELTEGECQKVMIAIA 172
Query: 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300
+ + +P +L+ DEPT ++P + L+ + N + + ++++
Sbjct: 173 L-------ANQPRLLIADEPTNSMEPTTQAQIFRLLSRL---------NQNSNTTILLIS 216
Query: 301 HQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSS 333
H I + D++ LY G+ V + E +
Sbjct: 217 HDLQMISQWADKINVLYCGQTVESAPSEELVTM 249
|
Length = 330 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 3e-10
Identities = 63/256 (24%), Positives = 109/256 (42%), Gaps = 35/256 (13%)
Query: 75 SENVNTLFEPEDDGDVLIDCRNVYKSF-----GEKHILRGVSFKIRHGEAVGIIGPSGTG 129
S+ N L D I+ ++V+ + E L + +I G+ V I+G +G G
Sbjct: 321 SDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCG 380
Query: 130 KSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVREN 187
KST+ K+ GL P +GE+ + G +S + R +F LFD L
Sbjct: 381 KSTLAKLFCGLYIPQEGEILLDGAA----VSADSRDDYRDLFSAIFADFHLFDDL----- 431
Query: 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247
+G E++ + + Q E V ++ + LS G +KR+AL + + D
Sbjct: 432 IGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP- 490
Query: 248 ESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306
+LL+DE A DP E+L+ + ++G+ + ++++H
Sbjct: 491 ------ILLFDEWAADQDPAFKRFFYEELLPDLKRQGK----------TIIIISHDDQYF 534
Query: 307 RRAVDRLIFLYEGKIV 322
A D++I L G IV
Sbjct: 535 ELA-DQIIKLAAGCIV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 6e-10
Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+ K+F L +SF R G+ ++G +G GKST+LKI++G PD G + I G++
Sbjct: 8 DGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE 67
Query: 155 RAGLISDEEI-SGLRIGLVFQSAALFDSLTVRENV--GFLLYENSKMRDEQISELVKENL 211
+ + +G + +++Q L +TV EN+ G L ++ + ++ +E L
Sbjct: 68 MRFASTTAALAAG--VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQL 125
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+G+ D LS G ++ V +A+++ + V+ +DEPT+ L
Sbjct: 126 EHLGVDIDPDTPLKYLSIGQRQMVEIAKALARN-------ARVIAFDEPTSSLSAREIEQ 178
Query: 272 VEDLIRSVHKKG 283
+ +IR + +G
Sbjct: 179 LFRVIRELRAEG 190
|
Length = 501 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 45/190 (23%)
Query: 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-----------YIRG-------RKR 155
+ G+ GI+GP+G GK+T +KI++G L P+ G+ RG +K
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK- 154
Query: 156 AGLISDEEIS-GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ--ISELVKENLA 212
+ + EI + V +F VRE LL K DE+ + E+V+
Sbjct: 155 ---LYNGEIKVVHKPQYVDLIPKVFKG-KVRE----LL----KKVDERGKLDEVVER--- 199
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
+GL+ + DR SELSGG +RVA+A ++ + + +DEPT+ LD V
Sbjct: 200 -LGLENILDRDISELSGGELQRVAIAAAL-------LRDADFYFFDEPTSYLDIRQRLNV 251
Query: 273 EDLIRSVHKK 282
LIR + +
Sbjct: 252 ARLIRELAEG 261
|
Length = 590 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-09
Identities = 62/237 (26%), Positives = 112/237 (47%), Gaps = 51/237 (21%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS-DEEI 164
+L+ ++ KI GE + I G +G+GK+++L +I G L P +G++ K +G IS +
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI-----KHSGRISFSSQF 106
Query: 165 SGLRIGLVFQSAALFDSLTVRENVGF-LLYENSKMR--------DEQISELVKENLAAVG 215
S + G T++EN+ F + Y+ + + +E I++ +++ +G
Sbjct: 107 SWIMPG------------TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLG 154
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
G+ LSGG + R++LAR++ D ++ L D P LD T E
Sbjct: 155 EGGI------TLSGGQRARISLARAVYKD-------ADLYLLDSPFGYLD--VFTEKEIF 199
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332
V K +AN I +VT + +++A D+++ L+EG + G E S
Sbjct: 200 ESCVCKL----MANKTRI----LVTSKMEHLKKA-DKILILHEGSSYFYGTFSELQS 247
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 59/235 (25%), Positives = 110/235 (46%), Gaps = 51/235 (21%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS-DEEI 164
+L+ +SFK+ G+ + + G +G+GKS++L +I G L P +G++ K +G IS +
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI-----KHSGRISFSPQT 495
Query: 165 SGLRIGLVFQSAALFDSLTVRENVGF-LLYENSKMR--------DEQISELVKENLAAVG 215
S + G T+++N+ F L Y+ + +E I+ +++ +G
Sbjct: 496 SWIMPG------------TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLG 543
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
G+ LSGG + R++LAR++ D ++ L D P LD T E
Sbjct: 544 EGGI------TLSGGQRARISLARAVYKD-------ADLYLLDSPFTHLD--VVTEKEIF 588
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330
+ K ++N I +VT + +++A D+++ L+EG + G E
Sbjct: 589 ESCLCKL----MSNKTRI----LVTSKLEHLKKA-DKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 2e-09
Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 53/264 (20%)
Query: 84 PEDDGDVLIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140
P G I +N Y S+ K L ++ +I G V I+G +G GK++++ + G
Sbjct: 607 PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE 666
Query: 141 LAP-DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF-LLYENSKM 198
L+ + V IRG + V Q + +F++ TVREN+ F +E+ +
Sbjct: 667 LSHAETSSVVIRG---------------SVAYVPQVSWIFNA-TVRENILFGSDFESERY 710
Query: 199 -RDEQISELVKE-------NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250
R ++ L + +L +G +GV +SGG K+RV++AR+ ++ N+
Sbjct: 711 WRAIDVTALQHDLDLLPGRDLTEIGERGV------NISGGQKQRVSMARA-VYSNS---- 759
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310
++ ++D+P + LD + V + S K G + V+VT+Q + +
Sbjct: 760 --DIYIFDDPLSALD---AHVAHQVFDSCMKDELKG-------KTRVLVTNQLHFLPL-M 806
Query: 311 DRLIFLYEGKIVWQGMTHEFTSSS 334
DR+I + EG I +G E + S
Sbjct: 807 DRIILVSEGMIKEEGTFAELSKSG 830
|
Length = 1495 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 61/203 (30%), Positives = 88/203 (43%), Gaps = 54/203 (26%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
N+ FG K + +S K G G+IG +G GKST +KI+ G L P G V +
Sbjct: 6 NITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD---- 61
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENV--GFL-----------LYENSKMRDE- 201
R+G + Q F+ TV + V G +Y +M +E
Sbjct: 62 ---------PNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEED 112
Query: 202 --QISEL-VK--------------ENLAAVGLKGVEDR--LPSELSGGMKKRVALARSII 242
++++L VK E L VG+ E L SE++ G K RV LA++ +
Sbjct: 113 GMKVADLEVKFAEMDGYTAEARAGELLLGVGI-PEEQHYGLMSEVAPGWKLRVLLAQA-L 170
Query: 243 FDNTKESVEPEVLLYDEPTAGLD 265
F N P++LL DEPT LD
Sbjct: 171 FSN------PDILLLDEPTNNLD 187
|
Length = 530 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 4e-09
Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 51/235 (21%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
L G++F I G V ++G G GKS++L + + +G V+++G
Sbjct: 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------- 699
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENV--GFLLYENSKMRDEQISELVKE-------NLA 212
+ V Q A + + ++REN+ G L E + + L+ + +
Sbjct: 700 ------SVAYVPQQAWI-QNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 213 AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IASTV 271
+G KGV LSGG K+RV+LAR++ + ++ L+D+P + +D + +
Sbjct: 753 EIGEKGV------NLSGGQKQRVSLARAVYSNA-------DIYLFDDPLSAVDAHVGKHI 799
Query: 272 VEDLIRSVHKKGENG-LANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
E +I G G L N + ++VTH S + + VD +I + GKI G
Sbjct: 800 FEHVI------GPEGVLKN----KTRILVTHGISYLPQ-VDVIIVMSGGKISEMG 843
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 5e-09
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 29/188 (15%)
Query: 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181
I G +G GKS++L++IAG++ P G +Y + + I+ + + L
Sbjct: 31 IKGANGCGKSSLLRMIAGIMQPSSGNIYYKN------CNINNIAKPYCTYIGHNLGLKLE 84
Query: 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241
+TV EN+ F S++ + +E + + L + D LS GM+K VA+AR I
Sbjct: 85 MTVFENLKFW----SEIYNS--AETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLI 138
Query: 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
+ + ++ L DE L ++ +LI V K AN G I ++ +H
Sbjct: 139 -------ACQSDLWLLDEVETNLSKENRDLLNNLI--VMK------ANSGGIV--LLSSH 181
Query: 302 QHSTIRRA 309
S+I+ A
Sbjct: 182 LESSIKSA 189
|
Length = 195 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 27/185 (14%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
L+ + + K+F L G + + G + ++G +G GKST++K++ G+ D G +
Sbjct: 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63
Query: 151 RGRKRA--GLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN---------SKMR 199
G++ G S +E +G IG++ Q L LT+ EN+ FL E KM
Sbjct: 64 LGKEVTFNGPKSSQE-AG--IGIIHQELNLIPQLTIAENI-FLGREFVNRFGRIDWKKMY 119
Query: 200 DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
E +L LA + L+ D+L ELS G ++ V +A+ + F E +V++ DE
Sbjct: 120 AEA-DKL----LARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF-------ESKVIIMDE 167
Query: 260 PTAGL 264
PT L
Sbjct: 168 PTDAL 172
|
Length = 501 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
N+ K F + + ++ + GE + IIG +G GK+T+L+ + G L PD G V
Sbjct: 324 NLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
Length = 530 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 9e-09
Identities = 51/252 (20%), Positives = 113/252 (44%), Gaps = 42/252 (16%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+ + + RNV +K +R +SF + GE +G G G+G++ ++ + G+ G
Sbjct: 261 AHETVFEVRNVTSRDRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGG 318
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVF-----QSAALFDSLTVRENV------------G 189
E+ + G+ + + ++ G+ + + F + ++ +N+ G
Sbjct: 319 EIRLNGKD---ISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKG 375
Query: 190 FLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249
+ + +++ +E +E L A+ V + +ELSGG +++V +++ +
Sbjct: 376 AMGLFHEVD-EQRTAENQRELL-ALKCHSVNQNI-TELSGGNQQKVLISKWL-------C 425
Query: 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
PEV+++DEPT G+D A + ++R + G+ L +V+ + I
Sbjct: 426 CCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVIL----------MVSSELPEIITV 475
Query: 310 VDRLIFLYEGKI 321
DR+ EG++
Sbjct: 476 CDRIAVFCEGRL 487
|
Length = 510 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 30/164 (18%)
Query: 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR- 168
++ I+ GE + +IG +G+GKST+ ++ GL P GE+ + G+ ++ E+ R
Sbjct: 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP----VTAEQPEDYRK 397
Query: 169 -IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDR-- 222
VF LFD L E LV++ L + + +ED
Sbjct: 398 LFSAVFTDFHLFDQLLGPEG------------KPANPALVEKWLERLKMAHKLELEDGRI 445
Query: 223 LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
+LS G KKR+AL ++ E E ++LL DE A DP
Sbjct: 446 SNLKLSKGQKKRLALLLALA-----E--ERDILLLDEWAADQDP 482
|
Length = 547 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 9e-08
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 18/145 (12%)
Query: 77 NVNTLFEPEDDGDVLIDCRNV--------YKSFGEKHILRGVSFKIRHGEAVGIIGPSGT 128
N L E DDG L D + + Y + + I + ++F + G+ +G SG
Sbjct: 363 NRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGC 422
Query: 129 GKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRE 186
GKSTILK+I L P +G++ I + D + R IG+V Q LF S +++
Sbjct: 423 GKSTILKLIERLYDPTEGDIIINDSHN---LKDINLKWWRSKIGVVSQDPLLF-SNSIKN 478
Query: 187 NVGFLLYENSKMRD-EQISELVKEN 210
N+ + LY ++D E +S E+
Sbjct: 479 NIKYSLYS---LKDLEALSNYYNED 500
|
Length = 1466 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 45/230 (19%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L G+SF+I E VGI+G +G GKS++L + ++ ++G + I G IS +
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCD----ISKFGLM 1309
Query: 166 GLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
LR +G++ Q+ LF S TVR F L ++ D + E+L LK V R
Sbjct: 1310 DLRKVLGIIPQAPVLF-SGTVR----FNLDPFNEHNDADLW----ESLERAHLKDVIRRN 1360
Query: 224 PSEL-----------SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
L S G ++ ++LAR+++ + S ++L+ DE TA +D ++
Sbjct: 1361 SLGLDAEVSEAGENFSVGQRQLLSLARALL----RRS---KILVLDEATAAVDVRTDALI 1413
Query: 273 EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
+ IR K + +++ H+ +TI DR++ L G++V
Sbjct: 1414 QKTIREEFKS-----------CTMLIIAHRLNTIIDC-DRILVLDAGRVV 1451
|
Length = 1622 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
G ++ + NV K +++ S +++ G+ + +IGP+G GK+T+LK++ G L D G
Sbjct: 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGR 375
Query: 148 VY 149
++
Sbjct: 376 IH 377
|
Length = 635 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-07
Identities = 17/35 (48%), Positives = 28/35 (80%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140
+L+ +SF+I+ G+ + I GPSGTGKS++ + +AGL
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL 50
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 5e-07
Identities = 55/234 (23%), Positives = 106/234 (45%), Gaps = 33/234 (14%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+L G+SF + E VG++G +G GKS++L + ++ +KG + I ++ ++
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCD----VAKFGLT 1306
Query: 166 GLR--IGLVFQSAALFDSLTVRENVGFLLYEN-----SKMRDEQISELVKENLAAVGLKG 218
LR + ++ QS LF S TVR N+ N + I +++ N GL
Sbjct: 1307 DLRRVLSIIPQSPVLF-SGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRN--PFGLDA 1363
Query: 219 VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278
S G ++ ++LAR+++ ++L+ DE TA +D ++++ IR
Sbjct: 1364 EVSEGGENFSVGQRQLLSLARALL-------RRSKILVLDEATASVDVRTDSLIQRTIRE 1416
Query: 279 VHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332
K + +V+ H+ +TI D+++ L G+++ E S
Sbjct: 1417 EFKS-----------CTMLVIAHRLNTIIDC-DKILVLSSGQVLEYDSPQELLS 1458
|
Length = 1495 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 39/202 (19%)
Query: 82 FEPEDDGDVLIDCRNVYKSFGEKHILRG-VSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140
+ P G+V + + + LR +SF +R GE VG+ G G G+S ++K++ G
Sbjct: 248 YRPRPLGEVRLRLDGL-----KGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA 302
Query: 141 LAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF-----QSAALFDSLTVRENV------- 188
G+VY+ G+ + +R G++ ++ + +V +N+
Sbjct: 303 TRRTAGQVYLDGKP---IDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH 359
Query: 189 ----GFLLYENSKMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVALARSIIF 243
G L+ + +E + ++ +K ++L LSGG +++ L R +
Sbjct: 360 HLRAGCLI------NNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWL-- 411
Query: 244 DNTKESVEPEVLLYDEPTAGLD 265
S + +V+L DEPT G+D
Sbjct: 412 -----SEDMKVILLDEPTRGID 428
|
Length = 501 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 45/227 (19%), Positives = 75/227 (33%), Gaps = 65/227 (28%)
Query: 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164
H L+ + I V + G SG+GKST++ L I +
Sbjct: 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG---LYASGKARLISFLPKF-------- 57
Query: 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224
N + +Q+ L+ L + L +
Sbjct: 58 ----------------------------SRNKLIFIDQLQFLIDVGLGYLTL----GQKL 85
Query: 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
S LSGG +RV LA + + + DEP+ GL + L+ +
Sbjct: 86 STLSGGELQRVKLASEL-----FSEPPGTLFILDEPSTGLHQQ---DINQLLEVI----- 132
Query: 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQG 325
GL + GN + +++ H + A D +I GK+V+ G
Sbjct: 133 KGLIDLGN--TVILIEHNLDVLSSA-DWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 9e-07
Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 60/275 (21%)
Query: 91 LIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--- 143
L+D RN+ F G + VS + GE G++G SG+GKS I K I G+
Sbjct: 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWR 62
Query: 144 ---------DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL-- 192
D + + R+R L+ G + ++FQ L E VG L
Sbjct: 63 VTADRMRFDDIDLLRLSPRERRKLV------GHNVSMIFQEPQ--SCLDPSERVGRQLMQ 114
Query: 193 -----------YENSKMRDEQISELVKENLAAVGLKGVEDRL---PSELSGGMKKRVALA 238
++ R + EL L VG+K +D + P EL+ G ++V +A
Sbjct: 115 NIPGWTYKGRWWQRFGWRKRRAIEL----LHRVGIKDHKDAMRSFPYELTEGECQKVMIA 170
Query: 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298
I N +P +L+ DEPT ++P + L+ + N N + ++
Sbjct: 171 --IALAN-----QPRLLIADEPTNAMEPTTQAQIFRLLTRL---------NQNNNTTILL 214
Query: 299 VTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSS 333
++H + + D++ LY G+ V + E ++
Sbjct: 215 ISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT 249
|
Length = 330 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-06
Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 62/200 (31%)
Query: 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175
GE + I+GP G+GK+T+ + +A L P G V I E+I
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY--------IDGEDI----------- 41
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235
E + L + + SG ++ R+
Sbjct: 42 --------------------------------LEEVLDQLLLIIVGGKKASGSGELRLRL 69
Query: 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295
ALA + ++P+VL+ DE T+ LD ++ L N +
Sbjct: 70 ALALA-------RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNL----T 118
Query: 296 YVVVTHQHSTIRRAVDRLIF 315
++ T+ + A+ R F
Sbjct: 119 VILTTNDEKDLGPALLRRRF 138
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+LR ++ I GE VGI+G +G GKS++ + + +GE+ I G I+ +
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN----IAKIGLH 1356
Query: 166 GLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223
LR I ++ Q LF S ++R N L S+ DE+ V L LK L
Sbjct: 1357 DLRFKITIIPQDPVLF-SGSLRMN----LDPFSQYSDEE----VWWALELAHLKTFVSAL 1407
Query: 224 PSE-----------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
P + LS G ++ V LAR+++ + ++L+ DE TA +D ++
Sbjct: 1408 PDKLDHECAEGGENLSVGQRQLVCLARALL-------RKTKILVLDEATAAVDLETDNLI 1460
Query: 273 EDLIRS 278
+ IR+
Sbjct: 1461 QSTIRT 1466
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 31/142 (21%)
Query: 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170
SF++ G + I GP+G GKS++ +I+ L G + + + + L
Sbjct: 472 SFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG-- 529
Query: 171 LVFQSAALFDSLTVRENVGFLLYENS----KMRD------EQISELVK-ENLAA--VGLK 217
T+R+ + +Y +S K R EQI + V+ ++ G
Sbjct: 530 ------------TLRDQI---IYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWS 574
Query: 218 GVEDRLPSELSGGMKKRVALAR 239
V+D + LSGG K+R+A+AR
Sbjct: 575 AVQDWM-DVLSGGEKQRIAMAR 595
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 6e-06
Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
+R VSF + GE +GI G G ++ I++ + G+ G + + G+K ++E I+
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323
Query: 167 LRIGLVFQ---SAALFDSLTVRENV----------GFLLYENSKMRDEQISELVKENLAA 213
LV + S ++ L + N L +NS+M+ + + + +
Sbjct: 324 -GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSD-----TQWVIDS 377
Query: 214 VGLKGVEDRLP-SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV 272
+ +K R LSGG +++V + R ++ +PE+L+ DEPT G+D A +
Sbjct: 378 MRVKTPGHRTQIGSLSGGNQQKVIIGRWLL-------TQPEILMLDEPTRGIDVGAKFEI 430
Query: 273 EDLIRSVHKKGE 284
LI + KK +
Sbjct: 431 YQLIAELAKKDK 442
|
Length = 491 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 37/170 (21%)
Query: 159 ISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 216
I D + LR +V Q LF+ +++ EN+ F +++ E VK +
Sbjct: 1286 ICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKF-------GKEDATREDVKRACKFAAI 1337
Query: 217 KGVEDRLPSE-----------LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ LP++ LSGG K+R+A+AR+++ EP++LL DE T+ LD
Sbjct: 1338 DEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALL-------REPKILLLDEATSSLD 1390
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315
+ ++E I + K + + + + H+ ++I+R+ ++F
Sbjct: 1391 SNSEKLIEKTIVDIKDKADK---------TIITIAHRIASIKRSDKIVVF 1431
|
Length = 1466 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 16/85 (18%)
Query: 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284
S+LSGG K+R+++AR+II + P++L+ DE T+ LD + +V+ I ++ K E
Sbjct: 578 SKLSGGQKQRISIARAIIRN-------PKILILDEATSSLDNKSEYLVQKTINNL-KGNE 629
Query: 285 NGLANPGNIASYVVVTHQHSTIRRA 309
N + +++ H+ STIR A
Sbjct: 630 NRIT--------IIIAHRLSTIRYA 646
|
Length = 1466 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
++ GE +GI+GP+GTGK+T +KI+AG L P+
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 33/158 (20%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L +S K G+ +G++G +G+GKST+ II G L+P G+V R G E+S
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV-----DRNG-----EVSV 89
Query: 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKM-----RDEQISELVKENLAAVGLKGVED 221
+ I SA L LT EN+ F KM + ++I + + + L
Sbjct: 90 IAI-----SAGLSGQLTGIENIEF------KMLCMGFKRKEIKAMTPKIIEFSELGEFIY 138
Query: 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
+ + S GM+ ++ + +I +V P++L+ DE
Sbjct: 139 QPVKKYSSGMRAKLGFSINI-------TVNPDILVIDE 169
|
Length = 264 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 66/279 (23%), Positives = 123/279 (44%), Gaps = 66/279 (23%)
Query: 83 EPEDDGDVLIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139
EP G+V+++ RN+ + VSF +R GE +GI G G G++ +++ + G
Sbjct: 251 EPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG 310
Query: 140 LLAPDK--GEVYIRG----------------------RKRAGLISDEEISGLRIGLVFQS 175
P + GE++I G RKR G++ + G I L
Sbjct: 311 AY-PGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGV-GKNITL---- 364
Query: 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-SELSGGMKKR 234
AAL D T + + ++++ + E++ + +K L + LSGG +++
Sbjct: 365 AAL-DRFTGGS----RIDDAAELKT------ILESIQRLKVKTASPELAIARLSGGNQQK 413
Query: 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294
LA+ ++ + P++L+ DEPT G+D A + LI N L G
Sbjct: 414 AVLAKCLLLN-------PKILILDEPTRGIDVGAKYEIYKLI--------NQLVQQG--V 456
Query: 295 SYVVVTHQHSTIRRAVDRLIFLYEGKI----VWQGMTHE 329
+ +V++ + + DR++ ++EGK+ + +T E
Sbjct: 457 AIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLTQE 495
|
Length = 506 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
N+ KSF L V+ K+R ++G +G GKST+LK + G+ D G + +G++
Sbjct: 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE 61
|
Length = 491 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166
L ++ +I G+ I+G G GKS++L I G + +G+V+ + + + S
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 167 LRIGLVF--QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224
R + + Q L ++ TV EN+ F N K R + +++ A L+ D LP
Sbjct: 77 NRYSVAYAAQKPWLLNA-TVEENITFGSPFN-KQRYKAVTD-------ACSLQPDIDLLP 127
Query: 225 S-----------ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
LSGG ++R+ +AR+ ++ NT ++ D+P + LD
Sbjct: 128 FGDQTEIGERGINLSGGQRQRICVARA-LYQNTN------IVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 64/275 (23%), Positives = 105/275 (38%), Gaps = 89/275 (32%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRG--------RK 154
IL+ S I+ ++GP +GK+T+L +AG L P GE+ G RK
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY-ENSKMRDEQISELVKEN--- 210
+ IS + + +G+ +TV+E + F + R + +SEL +
Sbjct: 240 TSAYISQND---VHVGV----------MTVKETLDFSARCQGVGTRYDLLSELARREKDA 286
Query: 211 -----------LAAVGLKGVEDRLPSE-----------------------LSGGMKKRVA 236
+ A ++GV+ L ++ +SGG KKRV
Sbjct: 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVT 346
Query: 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY 296
I+ TK L DE + GLD S+ +++ + + I
Sbjct: 347 TGEMIV-GPTK------TLFMDEISTGLD---SSTTYQIVKCLQQ-----------IVHL 385
Query: 297 VVVTHQHSTIRRA------VDRLIFLYEGKIVWQG 325
T S ++ A D +I L EG+IV+QG
Sbjct: 386 TEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQG 420
|
Length = 1470 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 49/252 (19%)
Query: 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170
S + G++ +G +G+GKS + + +AG L GE + +S E++ L +
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFS-HITRLSFEQLQKL-VS 80
Query: 171 LVFQSAALFDSLTVRENVGFLLYENSKMRD-------EQISELVKEN-----LAA-VGLK 217
+Q R N L S D E I + VK+ LA G+
Sbjct: 81 DEWQ----------RNNTDML----SPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGIT 126
Query: 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277
+ DR LS G ++ L ++++ EP++L+ DEP GLD + + +L+
Sbjct: 127 ALLDRRFKYLSTGETRKTLLCQALM-------SEPDLLILDEPFDGLDVASRQQLAELLA 179
Query: 278 SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPI 337
S+H+ G + V+V ++ I V L + + G E + +
Sbjct: 180 SLHQSG----------ITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA--L 227
Query: 338 VQQFA-SGSLEG 348
V Q A S LEG
Sbjct: 228 VAQLAHSEQLEG 239
|
Length = 490 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 199 RDEQISELVKENLAAVGLKGV------EDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252
R E I E AA L G+ + + SGG + R+ALAR++ +EP
Sbjct: 311 RLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALF-------IEP 363
Query: 253 EVLLYDEPTAGLD 265
++LL DEPT LD
Sbjct: 364 DLLLLDEPTNHLD 376
|
Length = 718 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 34/186 (18%)
Query: 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELV-KE------NLAAVGLKGVE-DRLPSE 226
S A L++RE F +++I+E V KE L VGL + R
Sbjct: 429 SIADVSELSIREAHEFFNQLTLTPEEKKIAEEVLKEIRERLGFLIDVGLDYLSLSRAAGT 488
Query: 227 LSGGMKKRVALARSIIFDNTKESVEPEVLLY--DEPTAGLDPIASTVVEDLIRSVHKKGE 284
LSGG +R+ LA I T +LY DEP+ GL + LI ++
Sbjct: 489 LSGGEAQRIRLATQIGSGLTG-------VLYVLDEPSIGLHQRDN---RRLINTL----- 533
Query: 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFTSSSNPIV 338
L + GN + +VV H TIR A D +I + + G++V G E ++ + +
Sbjct: 534 KRLRDLGN--TLIVVEHDEDTIRAA-DYVIDIGPGAGEHGGEVVASGTPEEILANPDSLT 590
Query: 339 QQFASG 344
Q+ SG
Sbjct: 591 GQYLSG 596
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 71/252 (28%), Positives = 102/252 (40%), Gaps = 65/252 (25%)
Query: 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR--------- 155
H L+ V I + V I G SG+GKS+ LA D +Y G++R
Sbjct: 9 HNLKNVDVDIPRNKLVVITGVSGSGKSS--------LAFDT--IYAEGQRRYVESLSAYA 58
Query: 156 ---AGLISD---EEISGLRIGLVFQSAALFDSLTVRENVGF---------LLYENSKMRD 200
G + + I GL + S R VG LL+ +R
Sbjct: 59 RQFLGQMDKPDVDSIEGLSPAIAIDQKTT--SRNPRSTVGTVTEIYDYLRLLFARVGIR- 115
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL-LYDE 259
E++ LV L + L R LSGG +R+ LA I S VL + DE
Sbjct: 116 ERLGFLVDVGLGYLTL----SRSAPTLSGGEAQRIRLATQI------GSGLTGVLYVLDE 165
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL--- 316
P+ GL P + + LI ++ + L + GN + +VV H TIR A D +I +
Sbjct: 166 PSIGLHPRDN---DRLIETLKR-----LRDLGN--TVLVVEHDEDTIRAA-DHVIDIGPG 214
Query: 317 ---YEGKIVWQG 325
+ G+IV QG
Sbjct: 215 AGVHGGEIVAQG 226
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.002
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE-VYIRG 152
+L F + + E +GI+ G+GK+T+ +++ GL APD+G+ + +RG
Sbjct: 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRG 49
|
Length = 213 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 37.8 bits (87), Expect = 0.004
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 193 YENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252
N + + ++ +LVK L + L +S G K+ +AL +++ K S
Sbjct: 156 LRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGS--- 212
Query: 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283
+LL DEP GL P + +L++ + +KG
Sbjct: 213 -LLLIDEPENGLHPKLLRKLVELLKELSEKG 242
|
Length = 256 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 100.0 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 100.0 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 100.0 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 100.0 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.98 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.97 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.97 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.97 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.97 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.97 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.97 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.96 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.96 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.96 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.96 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.95 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.95 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.95 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.94 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.94 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.94 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.91 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.91 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.91 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.9 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.88 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.88 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.88 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.87 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.87 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.86 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.86 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.86 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.86 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.85 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.84 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.84 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.84 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.82 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.81 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.81 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.79 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.77 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.77 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.69 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.66 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.64 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.64 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.62 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.59 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.56 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.56 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.55 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.53 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.51 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.49 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.49 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.46 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.46 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.45 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.45 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.4 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.4 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.39 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.38 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.37 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.36 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.35 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.34 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.34 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.32 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.32 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.29 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.26 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.26 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.26 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.24 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.16 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.11 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.05 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 99.04 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.98 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.97 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.97 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.95 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.94 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.92 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.91 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.91 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.91 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.87 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.85 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.84 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.83 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.78 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.76 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.74 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.68 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.67 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.66 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.61 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.6 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.59 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.56 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.54 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.54 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.53 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.52 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.51 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.5 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.5 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.49 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.48 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.47 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.46 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.45 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.45 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.42 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.38 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.38 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.36 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.34 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.34 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.32 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.31 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 98.31 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.29 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-69 Score=488.66 Aligned_cols=237 Identities=38% Similarity=0.644 Sum_probs=218.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+|+||+.++|+||||+|.+||+++||||||||||||||||+||.+|++|+|+++|+++.... .....|+++
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~-~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK-DILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh-hHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999999999999999998764322 222234579
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+|||+++|||++||.||+.++...-.+.++++.++++.++|+++||.+..+.+|.+|||||||||||||||+
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa------- 152 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA------- 152 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc-------
Confidence 9999999999999999999998766667888999999999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
++|+++|+|||||+|||+...++++.+++|+++| .|+|+|||++.++.++||||++|++|+|+++|++++
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG----------mTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~ 222 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG----------MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEE 222 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC----------CeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHH
Confidence 5799999999999999999999999999999998 699999999999999999999999999999999998
Q ss_pred cc-cCCcHHHHHHhcC
Q 018638 330 FT-SSSNPIVQQFASG 344 (352)
Q Consensus 330 ~~-~~~~~~~~~~~~~ 344 (352)
++ .+.++.+++|+..
T Consensus 223 ~f~~p~~~R~~~FL~~ 238 (240)
T COG1126 223 FFDNPKSERTRQFLSK 238 (240)
T ss_pred HhcCCCCHHHHHHHHh
Confidence 76 5678999999863
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-66 Score=475.52 Aligned_cols=248 Identities=46% Similarity=0.766 Sum_probs=232.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh-hccc
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-ISGL 167 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-~~~~ 167 (352)
.+.|++++|+++||++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++........ ..++
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999999999999999999877654333 2345
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
++|++||+.+||.++||+||++|++..+...+++.+++.+..-|+.+||... .+++|++|||||++|++|||||+.
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial--- 162 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL--- 162 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc---
Confidence 7999999999999999999999999998889999999999999999999876 999999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|+||++||||+||||.+...+-++|++|++.-+ .|+|+||||++.+..+||||++|.+|+|++.|+
T Consensus 163 ----dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg---------~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 163 ----DPELLFLDEPTSGLDPISAGVIDELIRELNDALG---------LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred ----CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC---------CEEEEEECChHHHHhhhceEEEEeCCEEEEeCC
Confidence 6999999999999999999999999999988732 699999999999999999999999999999999
Q ss_pred ccccccCCcHHHHHHhcCCCCCCCCC
Q 018638 327 THEFTSSSNPIVQQFASGSLEGPIRY 352 (352)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (352)
++++....+|++++|+.|.+++||++
T Consensus 230 ~~el~~sd~P~v~qf~~G~~~gpi~~ 255 (263)
T COG1127 230 PEELLASDDPWVRQFFNGIRDGPIPF 255 (263)
T ss_pred HHHHHhCCCHHHHHHhcCCCCCceec
Confidence 99999889999999999999999863
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-64 Score=475.13 Aligned_cols=239 Identities=37% Similarity=0.592 Sum_probs=219.2
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh-h
Q 018638 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-I 164 (352)
Q Consensus 91 ~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-~ 164 (352)
||++++|+|.|.. ..+|+||||+|++||++||||.||||||||+|||++|.+|++|+|.++|+++..+..... .
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6899999999975 469999999999999999999999999999999999999999999999999877644332 2
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
.|++||||||+++|+...||++|++|++... +.+++++++++.++|+.+||+++.+++|.+|||||||||+|||||+.
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeia-g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~- 158 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELA-GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN- 158 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhc-CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc-
Confidence 3457999999999999999999999999644 47889999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|+|||+|||||+|||++.+.++++|++++++-+ .||++|||.|+.++++||||+||++|+|+++
T Consensus 159 ------~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lg---------lTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 159 ------NPKILLCDEATSALDPETTQSILELLKDINRELG---------LTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred ------CCCEEEecCccccCChHHHHHHHHHHHHHHHHcC---------CEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 6999999999999999999999999999987731 6999999999999999999999999999999
Q ss_pred ecccccc-cCCcHHHHHHhcCCC
Q 018638 325 GMTHEFT-SSSNPIVQQFASGSL 346 (352)
Q Consensus 325 g~~~~~~-~~~~~~~~~~~~~~~ 346 (352)
|+..+++ .+.++.+++|+....
T Consensus 224 G~v~~vF~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 224 GTVSEVFANPKHAITQEFIGETL 246 (339)
T ss_pred ccHHHhhcCcchHHHHHHHHhhc
Confidence 9999966 577899999998654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=458.65 Aligned_cols=236 Identities=36% Similarity=0.561 Sum_probs=216.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||||.|+++.+++|+||+|++||++++||||||||||+||+|++|++|++|+|+|+|+++...... .+ |++||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~-~L-Rr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV-EL-RRKIG 78 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHH-HH-HHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999998765332 33 44799
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--cccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK--GVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||-|...|||++||.|||++.... .+++++++++++.|+|+.+||+ ++.+|+|++|||||||||.+||||+.
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L-~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa----- 152 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKL-LGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAA----- 152 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhh-cCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhc-----
Confidence 999999999999999999987643 4467889999999999999997 49999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|+|||+||||++|||.++..+++.+.+++++-+ +|||+||||++++.+++|||++|++|+|++.++|+
T Consensus 153 --dP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~---------kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~ 221 (309)
T COG1125 153 --DPPILLMDEPFGALDPITRKQLQEEIKELQKELG---------KTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPD 221 (309)
T ss_pred --CCCeEeecCCccccChhhHHHHHHHHHHHHHHhC---------CEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHH
Confidence 6999999999999999999999999999988732 69999999999999999999999999999999999
Q ss_pred ccc-cCCcHHHHHHhcCC
Q 018638 329 EFT-SSSNPIVQQFASGS 345 (352)
Q Consensus 329 ~~~-~~~~~~~~~~~~~~ 345 (352)
++. .+.++.+++|+..+
T Consensus 222 ~il~~Pan~FV~~f~g~~ 239 (309)
T COG1125 222 EILANPANDFVEDFFGES 239 (309)
T ss_pred HHHhCccHHHHHHHhccc
Confidence 976 57789999998765
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-63 Score=480.18 Aligned_cols=234 Identities=37% Similarity=0.616 Sum_probs=215.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
+.|+++||+|+||+..+|+||||+|++||+++|+||||||||||||+|+||..|++|+|.++|+++..+... ++.|
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~----kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE----KRPI 79 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh----hccc
Confidence 569999999999999999999999999999999999999999999999999999999999999999875332 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+|||++.|||+|||+|||+|++.......++++.+++.++|+.++|+++.+|+|++|||||||||||||||+.
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~------ 153 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP------ 153 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc------
Confidence 99999999999999999999999744445567788999999999999999999999999999999999999986
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++||||||+|+||...+.++...++++.++-+ +|.|+||||.+++..++|||+||++|+|.+.|+|++
T Consensus 154 -~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~g---------iT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~e 223 (352)
T COG3842 154 -EPKVLLLDEPLSALDAKLREQMRKELKELQRELG---------ITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223 (352)
T ss_pred -CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcC---------CeEEEEECCHHHHhhhccceEEccCCceeecCCHHH
Confidence 7999999999999999999999999999987621 699999999999999999999999999999999999
Q ss_pred cc-cCCcHHHHHHhc
Q 018638 330 FT-SSSNPIVQQFAS 343 (352)
Q Consensus 330 ~~-~~~~~~~~~~~~ 343 (352)
++ .+.+..+.+|+.
T Consensus 224 iY~~P~~~fVA~FiG 238 (352)
T COG3842 224 IYERPATRFVADFIG 238 (352)
T ss_pred HhhCcchHHHHHHhC
Confidence 76 456788888886
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-61 Score=465.22 Aligned_cols=233 Identities=36% Similarity=0.580 Sum_probs=215.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+|+||+..+|+++||+|+.||+++|+||||||||||||+||||++|++|+|+|+|++++.+. +. +++|+
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~-P~---~R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP-PE---KRGIA 78 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-hh---HCCEE
Confidence 599999999999866999999999999999999999999999999999999999999999999988753 22 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.|||+|||+|||+|++.. .+.+++++++++.++++.++|+++++|+|.+|||||||||||||||++
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~-~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr------- 150 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKL-RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR------- 150 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhh-CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc-------
Confidence 999999999999999999999854 446788999999999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|+++|||||+|+||...+..+...|++++++-+ .|+|+||||..+++.++|||++|++|+|.+.|+|.++
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~---------~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG---------TTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcC---------CcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence 6999999999999999999999999999988732 6999999999999999999999999999999999997
Q ss_pred c-cCCcHHHHHHhcC
Q 018638 331 T-SSSNPIVQQFASG 344 (352)
Q Consensus 331 ~-~~~~~~~~~~~~~ 344 (352)
+ .+.+..+..|+..
T Consensus 222 y~~P~n~fVA~FiG~ 236 (338)
T COG3839 222 YERPANLFVAGFIGS 236 (338)
T ss_pred hhCccchhhhhhcCC
Confidence 6 5667888888753
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=435.45 Aligned_cols=211 Identities=39% Similarity=0.627 Sum_probs=191.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.++++++|+++|++..+|+||||+|.+||+++||||||||||||||+|+||.+|++|+|.++|+++.. + ...+
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~---p----~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG---P----GPDI 74 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC---C----CCCE
Confidence 36899999999999999999999999999999999999999999999999999999999999987632 1 2259
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+||||++.|||.+||+||+.|++.... .++++..+++.++|+.+||.++.+++|++|||||||||+|||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~------ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT------ 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc------
Confidence 999999999999999999999985433 4556666789999999999999999999999999999999999996
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC--CeEEEe
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE--GKIVWQ 324 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~--G~iv~~ 324 (352)
+|+||||||||++||..++..+++.+.++.++.+ .|||+||||++++..++|||++|.+ |+|...
T Consensus 148 -~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~---------~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~ 214 (248)
T COG1116 148 -RPKLLLLDEPFGALDALTREELQDELLRLWEETR---------KTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEE 214 (248)
T ss_pred -CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC---------CEEEEEeCCHHHHHhhhCEEEEecCCCcceeeE
Confidence 6999999999999999999999999999976632 6999999999999999999999999 555443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-59 Score=438.03 Aligned_cols=231 Identities=38% Similarity=0.564 Sum_probs=204.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++..+. .++.+ ++++
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~-~kelA-k~ia 79 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLS-PKELA-KKLA 79 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcC-HHHHh-hhEE
Confidence 689999999999999999999999999999999999999999999999999999999999999987753 33333 3699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCC---CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKM---RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~---~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
||||.+...+.+||+|-+.++.+.+.+. ..++-.+.+.++|+.+|+.++.+|...+|||||||||.|||||++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ---- 155 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ---- 155 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc----
Confidence 9999987666799999999987654321 123334578999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||...+.++++++++++++ | .|||+|+||++.+.++||++++|++|++++.|+
T Consensus 156 ---~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~----------~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 156 ---ETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG----------LTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred ---CCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEEECCeEEeecC
Confidence 69999999999999999999999999999865 5 699999999999999999999999999999999
Q ss_pred ccccccCCcHHHHHHh
Q 018638 327 THEFTSSSNPIVQQFA 342 (352)
Q Consensus 327 ~~~~~~~~~~~~~~~~ 342 (352)
|+++.++ +.+++.|
T Consensus 223 p~evlT~--e~l~~Vy 236 (258)
T COG1120 223 PEEVLTE--ENLREVY 236 (258)
T ss_pred cchhcCH--HHHHHHh
Confidence 9988753 3344444
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=444.27 Aligned_cols=236 Identities=38% Similarity=0.614 Sum_probs=209.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++|++|.|+...+++||||+|+.||.+||+||||||||||||+|+||+.|++|.|.++|+.+.+... ...+.++|
T Consensus 1 m~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~~~R~V 79 (345)
T COG1118 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAVRDRKV 79 (345)
T ss_pred CceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cchhhcce
Confidence 36899999999999999999999999999999999999999999999999999999999999993322211 12233479
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcC-CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|||||++.||++|||.+||+|++.... ..++.+++.++.++|+.+.|+++.+++|.+|||||||||||||||+-
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~----- 154 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV----- 154 (345)
T ss_pred eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc-----
Confidence 999999999999999999999985442 24466788899999999999999999999999999999999999985
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++||||||+++||...+.++...|++++++ | .|+|+||||.+++.++||||++|++|+|...|++
T Consensus 155 --eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~----------~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p 222 (345)
T COG1118 155 --EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG----------VTTVFVTHDQEEALELADRVVVLNQGRIEQVGPP 222 (345)
T ss_pred --CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC----------ceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCH
Confidence 79999999999999999999999999999877 5 6999999999999999999999999999999999
Q ss_pred ccccc-CCcHHHHHHhc
Q 018638 328 HEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 328 ~~~~~-~~~~~~~~~~~ 343 (352)
.|++. +..+.+..|+.
T Consensus 223 ~ev~~~P~s~fV~~f~G 239 (345)
T COG1118 223 DEVYDHPASRFVARFLG 239 (345)
T ss_pred HHHhcCCCccceecccc
Confidence 99764 44566655553
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-59 Score=421.21 Aligned_cols=238 Identities=32% Similarity=0.512 Sum_probs=212.8
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc-----eEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-----GEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~-----G~I~i~G~~~~~~~~~~~ 163 (352)
.+.++++||++.||++.+|+|||++|++++++|||||||||||||||+++.+.+... |+|.++|+++.....+..
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 356999999999999999999999999999999999999999999999999988764 999999999875422222
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..|++||+|||.|+.|| +|++|||+|+...+...+ ++.++.|+..|+.+.|. +.+++.+..||||||||++|||
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 23457999999999999 899999999987665444 78889999999999984 4677788999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+ .+|+|||||||||+|||.+...+.++|.+|+++ .|||+|||+|..+.+++|+++++..|
T Consensus 163 alA-------v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~-----------yTIviVTHnmqQAaRvSD~taFf~~G 224 (253)
T COG1117 163 ALA-------VKPEVLLMDEPTSALDPISTLKIEELITELKKK-----------YTIVIVTHNMQQAARVSDYTAFFYLG 224 (253)
T ss_pred HHh-------cCCcEEEecCcccccCchhHHHHHHHHHHHHhc-----------cEEEEEeCCHHHHHHHhHhhhhhccc
Confidence 997 479999999999999999999999999999876 59999999999999999999999999
Q ss_pred eEEEeecccccc-cCCcHHHHHHhcCCC
Q 018638 320 KIVWQGMTHEFT-SSSNPIVQQFASGSL 346 (352)
Q Consensus 320 ~iv~~g~~~~~~-~~~~~~~~~~~~~~~ 346 (352)
++++.|++++++ .+.+..+++++.|..
T Consensus 225 ~LvE~g~T~~iF~~P~~~~TedYisGrf 252 (253)
T COG1117 225 ELVEFGPTDKIFTNPKHKRTEDYISGRF 252 (253)
T ss_pred EEEEEcCHHhhhcCccHHHHHHHhccCC
Confidence 999999999976 567888999998754
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-58 Score=422.56 Aligned_cols=213 Identities=39% Similarity=0.615 Sum_probs=188.4
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--hh
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EI 164 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~~ 164 (352)
+++++||+|.|+. ..+|++|||+|++||+++|+|||||||||||++|.|+.+|++|+|+|+|+++..+.... ..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 4789999999963 37999999999999999999999999999999999999999999999999987764332 23
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc-cCCCCCChHHHHHHHHHHHHhc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-RLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~-~~~~~LSGGqrQRvaIArAL~~ 243 (352)
++.+||||||+++|+|.+||.|||.+++... +.......+++.++++.+||.+..+ ++|.+|||||||||||||||++
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~-~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIA-GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHc-CCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 4557999999999999999999999987443 3333355677889999999987666 8999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|++||+||||++||..+.+.++++|++++++ | +||||||||...+. +|||++.|++|++.
T Consensus 160 -------~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g----------~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 160 -------NPKIILADEPTGNLDSKTAKEVLELLRELNKERG----------KTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred -------CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 69999999999999999999999999999876 5 69999999999876 68999999999953
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=423.77 Aligned_cols=236 Identities=32% Similarity=0.514 Sum_probs=208.2
Q ss_pred ceEEEEeEEEEeCCee----eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 90 VLIDCRNVYKSFGEKH----ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~----~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
++|+++||++.|+.+. +|++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|+|+|++........ ..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~-~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAK-AF 80 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccch-hh
Confidence 5799999999999877 999999999999999999999999999999999999999999999998765432222 22
Q ss_pred cceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHh
Q 018638 166 GLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 166 ~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
.+.|.+||||| .+.|..||++-|..++..+ +.++ .++++.++|+.+||. .+++|+|++|||||||||||||||+
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH-GLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccC-CccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 33699999998 5899999999998887542 2333 344589999999995 6999999999999999999999998
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++||||||||+||+..+.+++++|.+++++.. .|+||||||+..+..+||||+||++|+++
T Consensus 158 ~-------~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~---------lt~l~IsHdl~~v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 158 P-------EPKLLILDEPTSALDVSVQAQILNLLLELKKERG---------LTYLFISHDLALVEHMCDRIAVMDNGQIV 221 (252)
T ss_pred c-------CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC---------ceEEEEeCcHHHHHHHhhheeeeeCCeEE
Confidence 5 7999999999999999999999999999988742 69999999999999999999999999999
Q ss_pred Eeeccccccc-CCcHHHHHHhcCC
Q 018638 323 WQGMTHEFTS-SSNPIVQQFASGS 345 (352)
Q Consensus 323 ~~g~~~~~~~-~~~~~~~~~~~~~ 345 (352)
+.+++.++.. +.+++++.++...
T Consensus 222 E~~~~~~l~~~~~h~ytr~Ll~a~ 245 (252)
T COG1124 222 EIGPTEELLSHPSHPYTRELLEAV 245 (252)
T ss_pred EeechhhhhcCCccHHHHHHHHhh
Confidence 9999999764 5789999998753
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-57 Score=442.21 Aligned_cols=236 Identities=34% Similarity=0.563 Sum_probs=208.6
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh-hc
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-IS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-~~ 165 (352)
||+++||+|+|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++........ ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999952 479999999999999999999999999999999999999999999999999865422211 12
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+++|||+||++.+|+.+||+||+.+++... +.+..+..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~-- 157 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS-- 157 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh--
Confidence 346999999999999999999999976432 34556677788999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||++||+.++..++++|++++++ | .|||+|||+++.+.++||||++|++|+|++.
T Consensus 158 -----~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g----------~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 158 -----NPKVLLCDEATSALDPATTQSILELLKEINRRLG----------LTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 69999999999999999999999999999875 5 5999999999999999999999999999999
Q ss_pred eccccccc-CCcHHHHHHhcC
Q 018638 325 GMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 325 g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++++++. +.++.++.|+..
T Consensus 223 g~~~~v~~~p~~~~~~~~~~~ 243 (343)
T TIGR02314 223 GTVSEIFSHPKTPLAQKFIRS 243 (343)
T ss_pred cCHHHHHcCCCcHHHHHHHhh
Confidence 99988754 556777777753
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-58 Score=406.81 Aligned_cols=217 Identities=39% Similarity=0.566 Sum_probs=200.4
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccce
Q 018638 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~ 168 (352)
||+++||+|.|++ +.+|+||||+|++||++.|+||||||||||||+|++..+|++|+|+++|.++..+...+ ...+++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 6899999999964 55999999999999999999999999999999999999999999999999987654332 223557
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||+||||..|.+++||+||++|++.. .+.+++++++++.++|+.+||.+..+..|.+|||||||||+||||+++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v-~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~----- 154 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRV-IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN----- 154 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhc-cCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc-----
Confidence 99999999999999999999999854 346788999999999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++||.||||.+|||....++++++.++++.| +||||+|||.+.+.++--|++.|++|+++.+.
T Consensus 155 --~P~vLlADEPTGNLDp~~s~~im~lfeeinr~G----------tTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 155 --QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG----------TTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred --CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcC----------cEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 699999999999999999999999999999988 69999999999999999999999999998765
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=424.54 Aligned_cols=220 Identities=35% Similarity=0.570 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++++|+||||+|++|++++||||||||||||+|+|+|+++|++|+|.++|++.... ..+.+|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~-----~~~~~I 77 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR-----RKRLRI 77 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc-----ccCCeE
Confidence 579999999999976899999999999999999999999999999999999999999999999875321 123479
Q ss_pred EEEecCCC---CCCCCCHHHHHHhhhhhcCCC---CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 170 GLVFQSAA---LFDSLTVRENVGFLLYENSKM---RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 170 g~v~Q~~~---l~~~lTV~eni~~~~~~~~~~---~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
|||||... -|| +||+|.+.++.+...+. ..++-.+++.++|+++|+.++.++.+.+|||||+|||.|||||++
T Consensus 78 gYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~ 156 (254)
T COG1121 78 GYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ 156 (254)
T ss_pred EEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc
Confidence 99999653 376 79999999986543321 122236789999999999999999999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||+|+|+.++..++++|++|+++| +||+|||||++.+..++|+|+.|++ ++..
T Consensus 157 -------~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg----------~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~ 218 (254)
T COG1121 157 -------NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG----------KTVLMVTHDLGLVMAYFDRVICLNR-HLIA 218 (254)
T ss_pred -------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCcHHhHhhCCEEEEEcC-eeEe
Confidence 699999999999999999999999999999887 6999999999999999999999965 7889
Q ss_pred eecccccccC
Q 018638 324 QGMTHEFTSS 333 (352)
Q Consensus 324 ~g~~~~~~~~ 333 (352)
.|+++++.+.
T Consensus 219 ~G~~~~~~~~ 228 (254)
T COG1121 219 SGPPEEVLTE 228 (254)
T ss_pred ccChhhccCH
Confidence 9999998653
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-58 Score=417.83 Aligned_cols=226 Identities=34% Similarity=0.556 Sum_probs=200.9
Q ss_pred ceEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh-hccc
Q 018638 90 VLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-ISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-~~~~ 167 (352)
++|+++||++.| +++.+|+||||+|++||+++||||||||||||||+|+|+++|++|+|.++|.++..+..... ..+.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 579999999999 78899999999999999999999999999999999999999999999999998876543321 1234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcC-------CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENS-------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~-------~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArA 240 (352)
+|||+||+++|.+.+||.+|+..+...+. +...++.+..+.++|+++|+.+++.++.++|||||||||+||||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa 161 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA 161 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence 69999999999999999999988753221 22334445667889999999999999999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|++ +|++||.|||+++|||.+.+.+++.|++++++.+ .|+|+..|+++.+.+|||||+-|++|+
T Consensus 162 L~Q-------~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g---------~Tvi~nLH~vdlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 162 LVQ-------QPKIILADEPVASLDPESAKKVMDILKDINQEDG---------ITVIVNLHQVDLAKKYADRIIGLKAGR 225 (258)
T ss_pred Hhc-------CCCEEecCCcccccChhhHHHHHHHHHHHHHHcC---------CEEEEEechHHHHHHHHhhheEecCCc
Confidence 997 6999999999999999999999999999987631 699999999999999999999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
|+++|++.++.
T Consensus 226 ivfDg~~~el~ 236 (258)
T COG3638 226 IVFDGPASELT 236 (258)
T ss_pred EEEeCChhhhh
Confidence 99999988853
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=442.05 Aligned_cols=231 Identities=33% Similarity=0.543 Sum_probs=207.4
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~---~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PA---DRDI 78 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HH---HCCE
Confidence 59999999999 7788999999999999999999999999999999999999999999999999986532 22 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+||++||+|||.|++... +.+..+..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~------ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIR-GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR------ 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc------
Confidence 99999999999999999999987432 24555667788999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||++||+..+..+.+.|+++.++ | .|+|+||||++++..+||||++|++|++++.|+++
T Consensus 152 -~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~ 220 (356)
T PRK11650 152 -EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLK----------TTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPV 220 (356)
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHH
Confidence 69999999999999999999999999999875 5 69999999999999999999999999999999999
Q ss_pred cccc-CCcHHHHHHhc
Q 018638 329 EFTS-SSNPIVQQFAS 343 (352)
Q Consensus 329 ~~~~-~~~~~~~~~~~ 343 (352)
+++. +.+..+..|+.
T Consensus 221 ~~~~~p~~~~~~~~~g 236 (356)
T PRK11650 221 EVYEKPASTFVASFIG 236 (356)
T ss_pred HHHhCCccHHHHHHcC
Confidence 8764 44566666654
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-56 Score=415.43 Aligned_cols=231 Identities=55% Similarity=0.889 Sum_probs=200.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccceEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~ig 170 (352)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... ...+.+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 57899999999888999999999999999999999999999999999999999999999999875432110 11234699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+|+.+||+||+.++.........++..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~------- 153 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL------- 153 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999899999998865322223445556778899999999988999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..++++|++++++ | .|||+||||++++..+||||++|++|++++.|++++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG----------LTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHH
Confidence 69999999999999999999999999999764 5 599999999999999999999999999999998888
Q ss_pred cccCCcHHHH
Q 018638 330 FTSSSNPIVQ 339 (352)
Q Consensus 330 ~~~~~~~~~~ 339 (352)
+....+++++
T Consensus 224 ~~~~~~~~~~ 233 (235)
T cd03261 224 LRASDDPLVR 233 (235)
T ss_pred HcCCCChhhh
Confidence 7655555544
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=439.36 Aligned_cols=232 Identities=34% Similarity=0.581 Sum_probs=209.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++|
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~---~~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-I---QQRDI 80 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-H---HHCCE
Confidence 4799999999999888999999999999999999999999999999999999999999999999886432 2 12369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+||++||+||+.|++..+ +.++.+..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~------ 153 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKML-GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL------ 153 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHc-CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc------
Confidence 99999999999999999999987432 34566677889999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||++||+..+..+.+.|+++.++ | .|+|+||||++++..+||||++|++|+|++.|+++
T Consensus 154 -~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~ 222 (351)
T PRK11432 154 -KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN----------ITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQ 222 (351)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 69999999999999999999999999999875 4 59999999999999999999999999999999998
Q ss_pred cccc-CCcHHHHHHhc
Q 018638 329 EFTS-SSNPIVQQFAS 343 (352)
Q Consensus 329 ~~~~-~~~~~~~~~~~ 343 (352)
+++. +.+..+.+|+.
T Consensus 223 ~~~~~p~~~~~a~~~g 238 (351)
T PRK11432 223 ELYRQPASRFMASFMG 238 (351)
T ss_pred HHHhCCCchHHHHhcC
Confidence 8764 55677777664
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-56 Score=439.07 Aligned_cols=232 Identities=36% Similarity=0.601 Sum_probs=208.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+|+|+++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.... .. +++|
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-~~---~r~i 78 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-PQ---KRDY 78 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HH---HCCE
Confidence 4699999999999988999999999999999999999999999999999999999999999999876432 21 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+||++||+||+.|++... +.+..+..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~------ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNR-GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT------ 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc------
Confidence 99999999999999999999987432 34556667789999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||++||+..+..+.+.|+++.++ | .|+|+||||++++..+||||++|++|++++.|+++
T Consensus 152 -~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~----------~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~ 220 (353)
T TIGR03265 152 -SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG----------VTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQ 220 (353)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 69999999999999999999999999999875 4 69999999999999999999999999999999999
Q ss_pred cccc-CCcHHHHHHhc
Q 018638 329 EFTS-SSNPIVQQFAS 343 (352)
Q Consensus 329 ~~~~-~~~~~~~~~~~ 343 (352)
+++. +.+..+.+|+.
T Consensus 221 ~~~~~p~~~~~a~~~g 236 (353)
T TIGR03265 221 EIYRHPATPFVADFVG 236 (353)
T ss_pred HHHhCCCCHHHHHhcC
Confidence 8764 44566666654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=440.59 Aligned_cols=237 Identities=34% Similarity=0.567 Sum_probs=211.1
Q ss_pred CCCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhh
Q 018638 85 EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
+....++|+++||+++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.... ..
T Consensus 8 ~~~~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~-- 84 (375)
T PRK09452 8 PSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AE-- 84 (375)
T ss_pred hccCCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HH--
Confidence 334456799999999999888999999999999999999999999999999999999999999999999876432 21
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
+++||||||++.+||++||+|||.|++... +.+..+..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 85 -~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~- 161 (375)
T PRK09452 85 -NRHVNTVFQSYALFPHMTVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN- 161 (375)
T ss_pred -HCCEEEEecCcccCCCCCHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc-
Confidence 236999999999999999999999986432 34555667788999999999999999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+..+..+.+.|++++++ | .|+|+||||++++..+||||++|++|+|++
T Consensus 162 ------~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g----------~tiI~vTHd~~ea~~laDri~vl~~G~i~~ 225 (375)
T PRK09452 162 ------KPKVLLLDESLSALDYKLRKQMQNELKALQRKLG----------ITFVFVTHDQEEALTMSDRIVVMRDGRIEQ 225 (375)
T ss_pred ------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 69999999999999999999999999999875 5 599999999999999999999999999999
Q ss_pred eeccccccc-CCcHHHHHHhc
Q 018638 324 QGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 324 ~g~~~~~~~-~~~~~~~~~~~ 343 (352)
.|++++++. +.+..+.+|+.
T Consensus 226 ~g~~~~i~~~p~~~~~a~~~g 246 (375)
T PRK09452 226 DGTPREIYEEPKNLFVARFIG 246 (375)
T ss_pred EcCHHHHHhCcccHHHHHhcC
Confidence 999988764 45677777664
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-56 Score=436.11 Aligned_cols=230 Identities=32% Similarity=0.536 Sum_probs=207.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc--eEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK--GEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~--G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+|+|+++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|+++|+++.... . .+++|
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-~---~~r~i 81 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-P---HKRGL 81 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-H---HHCCE
Confidence 899999999998889999999999999999999999999999999999999999 99999999875421 1 12369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+||++||+|||.|++... +.+..+..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~------ 154 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI------ 154 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc------
Confidence 99999999999999999999987433 34556677789999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK--GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~--g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+..+..+.+.|++++++ | .|+|+||||++++..+||||++|++|++++.|++
T Consensus 155 -~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g----------~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~ 223 (362)
T TIGR03258 155 -EPDVLLLDEPLSALDANIRANMREEIAALHEELPE----------LTILCVTHDQDDALTLADKAGIMKDGRLAAHGEP 223 (362)
T ss_pred -CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 69999999999999999999999999999876 4 5999999999999999999999999999999999
Q ss_pred ccccc-CCcHHHHHHhc
Q 018638 328 HEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 328 ~~~~~-~~~~~~~~~~~ 343 (352)
+++.. +.+.++..|+.
T Consensus 224 ~~~~~~p~~~~~a~~~g 240 (362)
T TIGR03258 224 QALYDAPADGFAAEFLG 240 (362)
T ss_pred HHHHhCcCcHHHHHhhC
Confidence 98764 44566666654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=433.73 Aligned_cols=232 Identities=34% Similarity=0.566 Sum_probs=207.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~---~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-A---RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-H---HHCCEE
Confidence 589999999999888999999999999999999999999999999999999999999999999875431 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
||||++.+||.+||+||+.|++... ...+.++..+++.++++.++|.++.+++|.+|||||||||+|||||+.
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~---- 153 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV---- 153 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc----
Confidence 9999999999999999999976431 123455667789999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+..+..+.+.|+++.++ | .|+|+||||++++..+||||++|++|+|++.|+
T Consensus 154 ---~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g----------~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~ 220 (353)
T PRK10851 154 ---EPQILLLDEPFGALDAQVRKELRRWLRQLHEELK----------FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220 (353)
T ss_pred ---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 69999999999999999999999999999876 5 599999999999999999999999999999999
Q ss_pred cccccc-CCcHHHHHHhc
Q 018638 327 THEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 327 ~~~~~~-~~~~~~~~~~~ 343 (352)
+++++. +.+.++..|+.
T Consensus 221 ~~~i~~~p~~~~~~~~~g 238 (353)
T PRK10851 221 PDQVWREPATRFVLEFMG 238 (353)
T ss_pred HHHHHhCccchHHHHhcC
Confidence 988754 45667776654
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-56 Score=413.22 Aligned_cols=224 Identities=40% Similarity=0.621 Sum_probs=201.2
Q ss_pred ceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
++++++|++++|++. .+|+++||+|++||+++|+|+||||||||+++++|+++|++|+|.++|.++........ .+++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~-~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE-LRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH-hhcc
Confidence 479999999999765 89999999999999999999999999999999999999999999999998642111222 2447
Q ss_pred EEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 169 IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 169 ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
+|||||+| .+|. -||++.++|++. +.+.+.+++.+++.++++.+|+.++.++.|.+||||||||||||.+|+.
T Consensus 81 vG~VfQnpd~q~~~-~tV~~evafg~~-n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~--- 155 (235)
T COG1122 81 VGLVFQNPDDQLFG-PTVEDEVAFGLE-NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM--- 155 (235)
T ss_pred eEEEEECccccccc-CcHHHHHhhchh-hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc---
Confidence 99999999 5564 699999999984 4456777899999999999999999999999999999999999999984
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++||||||||+||+..++.+++++++|+++++ .|+|++|||++++..+|||+++|++|+++.+|+
T Consensus 156 ----~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~---------~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 156 ----GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGG---------KTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred ----CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC---------CeEEEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 7999999999999999999999999999998742 599999999999999999999999999999999
Q ss_pred cccccc
Q 018638 327 THEFTS 332 (352)
Q Consensus 327 ~~~~~~ 332 (352)
+.++..
T Consensus 223 p~~i~~ 228 (235)
T COG1122 223 PAEIFN 228 (235)
T ss_pred HHHHhh
Confidence 888764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=424.84 Aligned_cols=222 Identities=35% Similarity=0.566 Sum_probs=199.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||+|+|+++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ... .+.+
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~--~~~-~~~~ 81 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR--ARH-ARQR 81 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc--hHH-HHhc
Confidence 3579999999999998999999999999999999999999999999999999999999999999987532 122 2346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|||+||++.+|+.+||+||+.+....+ +.+..+..+++.++++.++|.+..++++.+||||||||++|||||++
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~----- 155 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYF-GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN----- 155 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC-----
Confidence 999999999999999999998754332 34445556678899999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||+|||+.++..++++|++++++| .|||++||+++++.++||||++|++|++++.|+++
T Consensus 156 --~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~ 223 (306)
T PRK13537 156 --DPDVLVLDEPTTGLDPQARHLMWERLRSLLARG----------KTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPH 223 (306)
T ss_pred --CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 699999999999999999999999999998766 59999999999999999999999999999999888
Q ss_pred ccc
Q 018638 329 EFT 331 (352)
Q Consensus 329 ~~~ 331 (352)
++.
T Consensus 224 ~l~ 226 (306)
T PRK13537 224 ALI 226 (306)
T ss_pred HHH
Confidence 764
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=410.67 Aligned_cols=236 Identities=34% Similarity=0.592 Sum_probs=213.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
+++++++|+|+||+-.+++||||+|++||+++||||||||||||+|+|+|+++|++|+|+++|+++..+ ++....+..|
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l-~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL-PPHRIARLGI 81 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCC-CHHHHHhccc
Confidence 579999999999999999999999999999999999999999999999999999999999999999876 4455566689
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcC-----------CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENS-----------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~-----------~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIA 238 (352)
+.-||.+.+|++|||.||+..+...+. ....++..+++.++|+++||.+..+++..+||+|||+|+.||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 999999999999999999988753210 013466778899999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++||||||.+||.+....++.++|+++++++. .||++|.|||+.+..+||||+||+.
T Consensus 162 rALa~-------~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g---------~tillIEHdM~~Vm~l~dri~Vl~~ 225 (250)
T COG0411 162 RALAT-------QPKLLLLDEPAAGLNPEETEELAELIRELRDRGG---------VTILLIEHDMKLVMGLADRIVVLNY 225 (250)
T ss_pred HHHhc-------CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCC---------cEEEEEEeccHHHhhhccEEEeccC
Confidence 99986 6999999999999999999999999999998642 6999999999999999999999999
Q ss_pred CeEEEeecccccccCCcHHHHHHhcC
Q 018638 319 GKIVWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 319 G~iv~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
|+++++|+|+++. .+|.+.+.|-|
T Consensus 226 G~~IAeG~P~eV~--~dp~VieAYLG 249 (250)
T COG0411 226 GEVIAEGTPEEVR--NNPRVIEAYLG 249 (250)
T ss_pred CcCcccCCHHHHh--cCHHhHHHhcC
Confidence 9999999999986 46777776654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-55 Score=432.88 Aligned_cols=233 Identities=33% Similarity=0.529 Sum_probs=208.3
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||+|+|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~---~~r~ 92 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-P---YQRP 92 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-H---HHCC
Confidence 45799999999999888999999999999999999999999999999999999999999999999875432 1 1336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||||||++.+||++||+|||.|++... +.+..+..+++.++++.++|.++.+++|.+|||||||||+|||||+.
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~----- 166 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK----- 166 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999987432 34556677789999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+..+..+.+.|+++.++ | .|+|+||||++++..+||||++|++|++++.|++
T Consensus 167 --~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~ 234 (377)
T PRK11607 167 --RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG----------VTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEP 234 (377)
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCH
Confidence 69999999999999999999999999998765 4 5999999999999999999999999999999999
Q ss_pred ccccc-CCcHHHHHHhc
Q 018638 328 HEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 328 ~~~~~-~~~~~~~~~~~ 343 (352)
++++. +.+.++.+|+.
T Consensus 235 ~~~~~~p~~~~~a~~~g 251 (377)
T PRK11607 235 EEIYEHPTTRYSAEFIG 251 (377)
T ss_pred HHHHhCCccHHHHHhcC
Confidence 98764 44566666653
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-55 Score=425.94 Aligned_cols=239 Identities=29% Similarity=0.528 Sum_probs=209.0
Q ss_pred cceEEEEeEEEEeCC-------------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 89 DVLIDCRNVYKSFGE-------------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 89 ~~~l~~~nls~~y~~-------------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
.++|+++||+++|+. ..+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|+|+|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 478999999999962 5699999999999999999999999999999999999999999999999998
Q ss_pred CCCCChh-hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcC-CCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChH
Q 018638 156 AGLISDE-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGG 230 (352)
Q Consensus 156 ~~~~~~~-~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGG 230 (352)
....... ...+.+|+||||++ .++|.+||++||.+++..+. ..+.++..+++.++++.+||. +..+++|++||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 6542221 11234699999998 68888999999998764332 345666777889999999994 5789999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhh
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRA 309 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~ 309 (352)
|||||+|||||+. +|++||+||||++||+.++.+++++|++++++ | .|+|+||||++.+.++
T Consensus 166 ~~QRv~iArAL~~-------~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~----------~til~iTHdl~~~~~~ 228 (331)
T PRK15079 166 QCQRIGIARALIL-------EPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG----------LSLIFIAHDLAVVKHI 228 (331)
T ss_pred HHHHHHHHHHHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHh
Confidence 9999999999996 69999999999999999999999999999875 5 5999999999999999
Q ss_pred cCEEEEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 310 VDRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 310 aDrv~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
||||++|++|+|++.|+++++. .+.+++++.++..
T Consensus 229 ~dri~vl~~G~ive~g~~~~i~~~~~~py~~~l~~~ 264 (331)
T PRK15079 229 SDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSA 264 (331)
T ss_pred CCEEEEEECCEEEEEcCHHHHHcCCCCHHHHHHHhh
Confidence 9999999999999999988875 4568998887754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-55 Score=420.85 Aligned_cols=221 Identities=38% Similarity=0.653 Sum_probs=198.7
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.+++++||+|+|+ ++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.... ... .+++
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~-~~~~ 79 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAK-VRRR 79 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHH-HHhh
Confidence 3588999999999 69999999999999999999999999999999999999999999999999987532 112 2346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|||+||++.+++.+||+||+.|....+.. ......++++++++.+||.+..++++++||+|||||++||+||++
T Consensus 80 igy~~~~~~~~~~lT~~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~----- 153 (293)
T COG1131 80 IGYVPQEPSLYPELTVRENLEFFARLYGL-SKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH----- 153 (293)
T ss_pred eEEEccCCCCCccccHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc-----
Confidence 99999999999999999999998765543 224456679999999999987789999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||+||||.++.+++++|++++++|+ +||+++||.++++..+||||++|++|++++.|+++
T Consensus 154 --~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~---------~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~ 222 (293)
T COG1131 154 --DPELLILDEPTSGLDPESRREIWELLRELAKEGG---------VTILLSTHILEEAEELCDRVIILNDGKIIAEGTPE 222 (293)
T ss_pred --CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC---------cEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 5999999999999999999999999999998862 59999999999999999999999999999999877
Q ss_pred cc
Q 018638 329 EF 330 (352)
Q Consensus 329 ~~ 330 (352)
++
T Consensus 223 ~l 224 (293)
T COG1131 223 EL 224 (293)
T ss_pred HH
Confidence 65
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-56 Score=419.06 Aligned_cols=237 Identities=36% Similarity=0.578 Sum_probs=215.3
Q ss_pred eEEEEeEEEEeCCe------------------------eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce
Q 018638 91 LIDCRNVYKSFGEK------------------------HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (352)
Q Consensus 91 ~l~~~nls~~y~~~------------------------~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G 146 (352)
.|+++||+|-||.+ ..++|+||+|++||++.|+|-||||||||+|+|++|.+|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 48899999999731 257899999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCChh--hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC
Q 018638 147 EVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224 (352)
Q Consensus 147 ~I~i~G~~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~ 224 (352)
+|+++|+++....... +.+++++++|||++.|+|+.||.||+.|++. ..+.++++.++++.++|+.+||+++.+++|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe-v~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE-VQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee-ecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 9999999987754332 2345579999999999999999999999984 456788888999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH
Q 018638 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~ 304 (352)
++|||||||||.|||||+. +|+|||+|||||+|||--+.++++.|.+|.++-+ +||||||||++
T Consensus 163 ~eLSGGMqQRVGLARAla~-------~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~---------KTIvFitHDLd 226 (386)
T COG4175 163 NELSGGMQQRVGLARALAN-------DPDILLMDEAFSALDPLIRTEMQDELLELQAKLK---------KTIVFITHDLD 226 (386)
T ss_pred ccccchHHHHHHHHHHHcc-------CCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC---------CeEEEEecCHH
Confidence 9999999999999999986 6999999999999999999999999999987632 59999999999
Q ss_pred HHHhhcCEEEEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 305 TIRRAVDRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 305 ~i~~~aDrv~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++.++.|||.+|++|+|++.|+|+|+. ++.++|+..|+.+
T Consensus 227 EAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~ 267 (386)
T COG4175 227 EALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRN 267 (386)
T ss_pred HHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhc
Confidence 999999999999999999999999965 6779999999976
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=429.55 Aligned_cols=231 Identities=33% Similarity=0.548 Sum_probs=205.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++||
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~~---~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-PA---ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-Hh---HCCEE
Confidence 499999999999888999999999999999999999999999999999999999999999999875431 11 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+.+||+||+.|++... +.+..+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~------- 150 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA------- 150 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999876432 23455566778999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+.++..+.+.|+++.++ | .|+|+||||++++..+||||++|++|++++.|++++
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG----------RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 69999999999999999999999999999765 5 599999999999999999999999999999999988
Q ss_pred ccc-CCcHHHHHHhc
Q 018638 330 FTS-SSNPIVQQFAS 343 (352)
Q Consensus 330 ~~~-~~~~~~~~~~~ 343 (352)
+.. +.+..+..|+.
T Consensus 221 i~~~p~~~~~~~~~g 235 (369)
T PRK11000 221 LYHYPANRFVAGFIG 235 (369)
T ss_pred HHhCcccHHHHHhcC
Confidence 754 45566666654
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-55 Score=388.73 Aligned_cols=221 Identities=37% Similarity=0.590 Sum_probs=197.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||.+++|.++|+..+ =..+++|+.||++||+|||||||||||++|+|++.|.+|+|+|+|++...... ..+-++
T Consensus 1 ~l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P----~~RPVS 74 (231)
T COG3840 1 MLALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP----AERPVS 74 (231)
T ss_pred CccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc----ccCChh
Confidence 478899999998754 37889999999999999999999999999999999999999999999765322 223599
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
++||+.+||.++||.+||.+++...-..+. +.+++++.++.++||.++.+|.|.+|||||||||||||+|++
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a-~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR------- 146 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNA-EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVR------- 146 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCH-HHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhc-------
Confidence 999999999999999999998754433443 446778999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+-+|||||||||+|||.-+.+++.++.+++.+.+ .|++||||+++++.+++||++++++|+|.++|++.++
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~---------~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERK---------MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhC---------CEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHH
Confidence 4889999999999999999999999999987642 6999999999999999999999999999999999887
Q ss_pred ccCC
Q 018638 331 TSSS 334 (352)
Q Consensus 331 ~~~~ 334 (352)
+...
T Consensus 218 ~~~~ 221 (231)
T COG3840 218 LSGK 221 (231)
T ss_pred hccC
Confidence 6543
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=401.77 Aligned_cols=236 Identities=36% Similarity=0.564 Sum_probs=203.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 58999999999988899999999999999999999999999999999999999999999999987532111112234699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+++.+||+||+.++.....+....+..+++.++++.+|+++..++++.+||||||||++|||||+.
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~------- 153 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV------- 153 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc-------
Confidence 9999999998899999998764222223444556678899999999988999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|++|||||||+|||+.++..+.++|+++++++ .|||++||+++++..+|||+++|++|++++.|++.++
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG----------MTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 699999999999999999999999999997665 5999999999999999999999999999999988877
Q ss_pred cc-CCcHHHHHHhc
Q 018638 331 TS-SSNPIVQQFAS 343 (352)
Q Consensus 331 ~~-~~~~~~~~~~~ 343 (352)
.. +.++...+++.
T Consensus 224 ~~~~~~~~~~~~~~ 237 (240)
T PRK09493 224 IKNPPSQRLQEFLQ 237 (240)
T ss_pred hcCCchHHHHHHhh
Confidence 54 33556666654
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-54 Score=423.00 Aligned_cols=235 Identities=36% Similarity=0.593 Sum_probs=204.8
Q ss_pred eEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh-hc
Q 018638 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-IS 165 (352)
Q Consensus 91 ~l~~~nls~~y~----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-~~ 165 (352)
||+++||+|+|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++........ ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 589999999997 4679999999999999999999999999999999999999999999999998764322211 12
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+.+||||||++.+|+.+||+||+.++.... +.+..+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~-- 157 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS-- 157 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc--
Confidence 346999999999999899999999875432 34455556778899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..++++|++++++ | +|||++|||++++.++||||++|++|++++.
T Consensus 158 -----~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 158 -----NPKVLLCDEATSALDPATTRSILELLKDINRELG----------LTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 69999999999999999999999999999765 5 5999999999999999999999999999999
Q ss_pred eccccccc-CCcHHHHHHhc
Q 018638 325 GMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 325 g~~~~~~~-~~~~~~~~~~~ 343 (352)
|+++++.. +.++....++.
T Consensus 223 g~~~~~~~~~~~~~~~~~~~ 242 (343)
T PRK11153 223 GTVSEVFSHPKHPLTREFIQ 242 (343)
T ss_pred cCHHHHHhCCCcHHHHHHHh
Confidence 98888754 34556666654
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-54 Score=408.60 Aligned_cols=237 Identities=35% Similarity=0.629 Sum_probs=204.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccce
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~ 168 (352)
.+|+++||+++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... ...+.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 5799999999999889999999999999999999999999999999999999999999999999875432111 111336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|+|+||++.+|+.+||.||+.++.......+.....+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~----- 160 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL----- 160 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999999899999998865332223344445567889999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+.++..+.++|++++++ | .|||+||||++++.++||++++|++|++++.|++
T Consensus 161 --~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (269)
T PRK11831 161 --EPDLIMFDEPFVGQDPITMGVLVKLISELNSALG----------VTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSA 228 (269)
T ss_pred --CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCH
Confidence 69999999999999999999999999999765 5 5999999999999999999999999999999988
Q ss_pred cccccCCcHHHHHHhc
Q 018638 328 HEFTSSSNPIVQQFAS 343 (352)
Q Consensus 328 ~~~~~~~~~~~~~~~~ 343 (352)
+++....++.++.++.
T Consensus 229 ~~~~~~~~~~~~~~~~ 244 (269)
T PRK11831 229 QALQANPDPRVRQFLD 244 (269)
T ss_pred HHHhcCCcHHHHHHHH
Confidence 8876544555566664
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=423.36 Aligned_cols=223 Identities=36% Similarity=0.565 Sum_probs=199.6
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..++|+++||+|+|+++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ... .+.
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~--~~~-~~~ 114 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR--ARL-ARA 114 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc--hHH-Hhc
Confidence 34689999999999999999999999999999999999999999999999999999999999999987532 122 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|||+||++.+++.+||+||+.+....+ +.+..+..+++.++++.++|.+..++++.+|||||||||+|||||++
T Consensus 115 ~ig~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~---- 189 (340)
T PRK13536 115 RIGVVPQFDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN---- 189 (340)
T ss_pred cEEEEeCCccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhc----
Confidence 6999999999999999999998754332 23444455677889999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..++++|++++++| .|||++||+++++.++||||++|++|++++.|++
T Consensus 190 ---~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g----------~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~ 256 (340)
T PRK13536 190 ---DPQLLILDEPTTGLDPHARHLIWERLRSLLARG----------KTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRP 256 (340)
T ss_pred ---CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 599999999999999999999999999998766 5999999999999999999999999999999998
Q ss_pred cccc
Q 018638 328 HEFT 331 (352)
Q Consensus 328 ~~~~ 331 (352)
+++.
T Consensus 257 ~~l~ 260 (340)
T PRK13536 257 HALI 260 (340)
T ss_pred HHHH
Confidence 8764
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-54 Score=400.48 Aligned_cols=231 Identities=38% Similarity=0.599 Sum_probs=200.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... . .+.+++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~---~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-V---QERNVG 77 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-c---cccceE
Confidence 589999999999888999999999999999999999999999999999999999999999999865321 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
|++|++.+|+.+||.||+.++...... ....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~---- 153 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV---- 153 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc----
Confidence 999999999889999999886532211 1233445667889999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..+.++|++++++ | .|||++|||++++..+|||+++|++|++++.|+
T Consensus 154 ---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (239)
T cd03296 154 ---EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH----------VTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220 (239)
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEECCeEEEecC
Confidence 69999999999999999999999999999875 5 599999999999999999999999999999998
Q ss_pred cccccc-CCcHHHHHHh
Q 018638 327 THEFTS-SSNPIVQQFA 342 (352)
Q Consensus 327 ~~~~~~-~~~~~~~~~~ 342 (352)
++++.. +.++....++
T Consensus 221 ~~~~~~~~~~~~~~~~~ 237 (239)
T cd03296 221 PDEVYDHPASPFVYSFL 237 (239)
T ss_pred HHHHhcCCCcHHHHHHh
Confidence 887653 3345555554
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-54 Score=419.76 Aligned_cols=239 Identities=28% Similarity=0.500 Sum_probs=208.9
Q ss_pred cceEEEEeEEEEeCC----------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCC
Q 018638 89 DVLIDCRNVYKSFGE----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158 (352)
Q Consensus 89 ~~~l~~~nls~~y~~----------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~ 158 (352)
+++|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 467999999999962 5799999999999999999999999999999999999999999999999998654
Q ss_pred CChh-hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHH
Q 018638 159 ISDE-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKR 234 (352)
Q Consensus 159 ~~~~-~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQR 234 (352)
.... ...+.+|+||||++ .+++.+||.+++.+.+..+......+..+++.++++.+||. ...+++|++||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 2211 11234699999998 58888999999987664433345556667889999999996 47899999999999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
|+|||||+. +|++||+||||++||+.++..++++|++++++ | .|+|+||||++.+.++||||
T Consensus 163 v~iArAL~~-------~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g----------~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 163 IAIARALML-------DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELG----------LSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred HHHHHHHHc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE
Confidence 999999996 69999999999999999999999999999875 5 59999999999999999999
Q ss_pred EEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 314 IFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++|++|+|++.|+++++. .+.+++++.++..
T Consensus 226 ~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~~ 257 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFNNPRHPYTQALLSA 257 (327)
T ss_pred EEEECCEEEEECCHHHHhcCCCCHHHHHHHHh
Confidence 999999999999988876 4568999988764
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=400.66 Aligned_cols=222 Identities=36% Similarity=0.618 Sum_probs=194.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCC-HHHHHhcCEEE
Confidence 47899999999888999999999999999999999999999999999999999999999999875432 22222336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCC---------CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKM---------RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~---------~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+||++.+|+.+||+||+.++....... ...+..+++.++++.+|+.+..++++.+|||||||||+|||||+
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999999999998865322111 13344567889999999998999999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||++||+.++..+.+.|++++++| .|||++|||++++..+||++++|++|+++
T Consensus 160 ~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 160 T-------DPKLLLLDEPAAGLNPEETEELAELIRELRERG----------ITVLLVEHDMDVVMSLADRVTVLDQGRVI 222 (236)
T ss_pred c-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 7 699999999999999999999999999997665 59999999999999999999999999999
Q ss_pred Eeecccccc
Q 018638 323 WQGMTHEFT 331 (352)
Q Consensus 323 ~~g~~~~~~ 331 (352)
+.|+++++.
T Consensus 223 ~~~~~~~~~ 231 (236)
T cd03219 223 AEGTPDEVR 231 (236)
T ss_pred eecCHHHhc
Confidence 999877764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=396.01 Aligned_cols=213 Identities=35% Similarity=0.560 Sum_probs=186.6
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccc
Q 018638 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~ 167 (352)
||+++||+++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... ...+.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 5899999999964 46999999999999999999999999999999999999999999999999875322111 11123
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+++|+||++.+|+.+||+||+.++.... +....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~---- 155 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRII-GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH---- 155 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc----
Confidence 6999999999999899999999875422 23344455678899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+||++++|++|+|
T Consensus 156 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 156 ---KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRG----------TTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred ---CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 699999999999999999999999999997665 5999999999999999999999999975
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-54 Score=415.13 Aligned_cols=222 Identities=35% Similarity=0.561 Sum_probs=197.3
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+.+|+++||+|+|+++.+|++|||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ... .+.+
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~-~~~~ 78 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR--ARL-ARVA 78 (303)
T ss_pred CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc--HHH-Hhhc
Confidence 3579999999999988899999999999999999999999999999999999999999999999986432 111 2346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|||+||++.+++.+||+||+.+....+ +.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~----- 152 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN----- 152 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999998899999998644222 23444455667889999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||++|||++++..+|||+++|++|+++..|+++
T Consensus 153 --~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g----------~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 153 --DPQLLILDEPTTGLDPHARHLIWERLRSLLARG----------KTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred --CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 699999999999999999999999999998766 59999999999999999999999999999999887
Q ss_pred ccc
Q 018638 329 EFT 331 (352)
Q Consensus 329 ~~~ 331 (352)
++.
T Consensus 221 ~~~ 223 (303)
T TIGR01288 221 ALI 223 (303)
T ss_pred HHH
Confidence 764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=395.96 Aligned_cols=217 Identities=35% Similarity=0.595 Sum_probs=193.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++... ... .+.+++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~-~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE--PRE-VRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC--hHH-HhhcEEE
Confidence 5799999999988999999999999999999999999999999999999999999999999886431 112 2336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+++.+||++|+.+....+ +....+..+++.++++.++|.+..++++.+||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~-------~ 149 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLY-GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVH-------R 149 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998865332 23344456678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
|++|||||||++||+.++..+.++|+++.++ | .|||++|||++++..+|||+++|++|++++.|++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG----------MTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999999999999999999876 5 599999999999999999999999999999886654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=425.90 Aligned_cols=228 Identities=32% Similarity=0.510 Sum_probs=201.7
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--hccceEEEEecCC
Q 018638 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--ISGLRIGLVFQSA 176 (352)
Q Consensus 99 ~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~--~~~~~ig~v~Q~~ 176 (352)
|+|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........ .++++|+||||++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 56888899999999999999999999999999999999999999999999999999865422211 1234799999999
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEE
Q 018638 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (352)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llL 256 (352)
.+|+.+||+|||.|+.... +.+.++..+++.++++.+||+.+.+++|.+|||||||||+|||||+. +|++||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~-~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~-------~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL-GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAA-------EPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhc-------CCCEEE
Confidence 9999999999999976432 34566677889999999999999999999999999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc-CC
Q 018638 257 YDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS-SS 334 (352)
Q Consensus 257 LDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~-~~ 334 (352)
|||||++||+.++..+++.|.+++++ + +|||+||||++++.++||||++|++|++++.|+++++.. +.
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~----------~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~ 222 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQ----------KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPA 222 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcc
Confidence 99999999999999999999999765 5 599999999999999999999999999999999888754 45
Q ss_pred cHHHHHHhcC
Q 018638 335 NPIVQQFASG 344 (352)
Q Consensus 335 ~~~~~~~~~~ 344 (352)
++++..|+..
T Consensus 223 ~~~~~~~~~~ 232 (363)
T TIGR01186 223 NEYVEEFIGK 232 (363)
T ss_pred cHHHHHHhhc
Confidence 6777777643
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=411.23 Aligned_cols=238 Identities=31% Similarity=0.563 Sum_probs=211.3
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-C----CceEEEECCEeCCCCCCh
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-P----DKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-p----~~G~I~i~G~~~~~~~~~ 161 (352)
+|+++||+.+|.. ..+++||||+|++||++||||.|||||||+.+.|+||++ | .+|+|.|+|+++..+...
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 3789999999953 479999999999999999999999999999999999998 4 579999999998776443
Q ss_pred h--hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCC-CHHHHHHHHHHHHHHcCCCc---ccccCCCCCChHHHH
Q 018638 162 E--EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKK 233 (352)
Q Consensus 162 ~--~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~l~~~gL~~---~~~~~~~~LSGGqrQ 233 (352)
. ..+.+.|+||||+| .|.|-+||.+.+...+..+... .+++..+++.++|+.+|+.+ .++++|++|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 2 23455799999998 6899999999998887665544 46677888999999999964 679999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
||.||.||+. +|++||.||||++||...+.+++++|++++++.+ .|+|+||||+..+.++||||
T Consensus 161 RV~IAmala~-------~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~---------~aiilITHDl~vva~~aDri 224 (316)
T COG0444 161 RVMIAMALAL-------NPKLLIADEPTTALDVTVQAQILDLLKELQREKG---------TALILITHDLGVVAEIADRV 224 (316)
T ss_pred HHHHHHHHhC-------CCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcC---------CEEEEEeCCHHHHHHhcceE
Confidence 9999999986 6999999999999999999999999999987521 69999999999999999999
Q ss_pred EEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 314 IFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+||+.|+||+.|++++++ ++.|||++.++..
T Consensus 225 ~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 225 AVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred EEEECcEEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 999999999999999966 6789999999875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-54 Score=404.68 Aligned_cols=240 Identities=29% Similarity=0.509 Sum_probs=206.0
Q ss_pred eEEEEeEEEEeC---------CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 91 LIDCRNVYKSFG---------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 91 ~l~~~nls~~y~---------~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
||+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 689999999995 36799999999999999999999999999999999999999999999999987543221
Q ss_pred h-hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHH
Q 018638 162 E-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 162 ~-~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaI 237 (352)
. ...+.+|+|+||++ .+++.+||+||+.+.+.........+..+++.++++.+|+. ...++++.+|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 1 11233699999997 46677899999987653222233444456788999999996 67899999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
||||+. +|++|||||||++||+.++..+.++|+++.++ | .|||+||||++.+..+||++++|
T Consensus 162 aral~~-------~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tiiivsH~~~~~~~~~d~i~~l 224 (265)
T TIGR02769 162 ARALAV-------KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG----------TAYLFITHDLRLVQSFCQRVAVM 224 (265)
T ss_pred HHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEeCCHHHHHHHhcEEEEE
Confidence 999997 69999999999999999999999999999865 5 59999999999999999999999
Q ss_pred eCCeEEEeecccccccCCcHHHHHHhcCCCCC
Q 018638 317 YEGKIVWQGMTHEFTSSSNPIVQQFASGSLEG 348 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (352)
++|++++.|+++++....+++++.++ +.+.+
T Consensus 225 ~~G~i~~~g~~~~~~~~~~~~~~~~~-~~~~~ 255 (265)
T TIGR02769 225 DKGQIVEECDVAQLLSFKHPAGRNLQ-SAVLP 255 (265)
T ss_pred eCCEEEEECCHHHHcCCCCHHHHHHH-HhccC
Confidence 99999999999888777888888887 44444
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-54 Score=400.43 Aligned_cols=236 Identities=36% Similarity=0.534 Sum_probs=203.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC------hhhh
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS------DEEI 164 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~------~~~~ 164 (352)
||+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 6999999999998889999999999999999999999999999999999999999999999998743210 0111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
.+.+++|+||++.+|+.+|++||+.++.........++..+++.++++.+|+....++++.+|||||||||+|||||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~- 161 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM- 161 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc-
Confidence 2336999999999998899999998754222223444455678899999999988899999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||++||+.++..+.++|+++.++| .|||++|||++++.++||++++|++|++++.
T Consensus 162 ------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 162 ------RPEVILFDEPTSALDPELVGEVLNTIRQLAQEK----------RTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred ------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 699999999999999999999999999998766 5999999999999999999999999999999
Q ss_pred eccccccc-CCcHHHHHHhc
Q 018638 325 GMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 325 g~~~~~~~-~~~~~~~~~~~ 343 (352)
|+++++.. +.++..+.++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK11264 226 GPAKALFADPQQPRTRQFLE 245 (250)
T ss_pred CCHHHHhcCCCCHHHHHHHH
Confidence 98888653 34566666654
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-54 Score=393.15 Aligned_cols=212 Identities=39% Similarity=0.655 Sum_probs=188.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... . .+.+++|
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~---~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-P---ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc-h---hhccEEE
Confidence 47899999999888999999999999999999999999999999999999999999999999875321 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+++.+|++||+.+..... .....+..+++.++++.+++.+..++++.+||||||||++|||||+. +
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~-------~ 148 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAR-------E 148 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998865322 23344455678899999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||+|||+.++..++++|++++++ | .|||++|||++++.++||++++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELG----------ITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999764 5 59999999999999999999999999998764
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=398.81 Aligned_cols=235 Identities=32% Similarity=0.519 Sum_probs=202.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-----ceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-----~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++..........
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 589999999999888999999999999999999999999999999999999998 999999999875321111122
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+|+|+||++.+|+ +|++||+.+...........+..+++.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 346999999999998 899999988653222123445566788999999998 778999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||+|||+.++..++++|++++++ .|||+||||++++..+|||+++|++|++
T Consensus 160 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tiiivsH~~~~~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 160 AV-------EPEVLLLDEPTSALDPIATGKIEELIQELKKK-----------YTIVIVTHNMQQAARISDRTAFFYDGEL 221 (247)
T ss_pred hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-----------CeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 97 69999999999999999999999999998764 4999999999999999999999999999
Q ss_pred EEeeccccccc-CCcHHHHHHhcC
Q 018638 322 VWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 322 v~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++.|+++++.. +.++.+.+++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~ 245 (247)
T TIGR00972 222 VEYGPTEQIFTNPKEKRTEDYISG 245 (247)
T ss_pred EEeCCHHHHHhCCCChHHHHHhcc
Confidence 99998888754 456666776653
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-54 Score=395.74 Aligned_cols=221 Identities=32% Similarity=0.594 Sum_probs=195.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLP-MHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCC-HhHHHhccEEE
Confidence 57899999999889999999999999999999999999999999999999999999999999865432 11222336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+||+||+.+....+ .....+..+++.++++.+++.+..++.+.+||||||||++|||||+. +
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-------~ 151 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIR-GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT-------N 151 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998864322 23334445677899999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
|++|||||||+|||+.++..+.++|+++.+++ .|||++|||++.+.++||++++|++|++++.|+.+++.
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~----------~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG----------IGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 99999999999999999999999999998765 59999999999999999999999999999999877764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=416.34 Aligned_cols=236 Identities=26% Similarity=0.459 Sum_probs=205.3
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC----CCceEEEECCEeCCCCCChh
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA----PDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~----p~~G~I~i~G~~~~~~~~~~ 162 (352)
+|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5999999999976 479999999999999999999999999999999999998 48999999999986543222
Q ss_pred h--hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc---ccccCCCCCChHHHHHH
Q 018638 163 E--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKKRV 235 (352)
Q Consensus 163 ~--~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~---~~~~~~~~LSGGqrQRv 235 (352)
. ..+.+|+||||++ .++|.+|+.+++...+..+.+...++..+++.++++.+||.+ ..+++|++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 1 1223699999998 578889999998876644333455566778899999999963 57899999999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
+|||||+. +|++||+||||++||+.++.+++++|++++++ | .|+|+||||++.+.++||||+
T Consensus 163 ~iArAL~~-------~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g----------~til~iTHdl~~~~~~adri~ 225 (326)
T PRK11022 163 MIAMAIAC-------RPKLLIADEPTTALDVTIQAQIIELLLELQQKEN----------MALVLITHDLALVAEAAHKII 225 (326)
T ss_pred HHHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEE
Confidence 99999997 69999999999999999999999999999874 5 599999999999999999999
Q ss_pred EEeCCeEEEeecccccc-cCCcHHHHHHhc
Q 018638 315 FLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 343 (352)
Q Consensus 315 vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~ 343 (352)
+|++|+|++.|+++++. .+.+++++.++.
T Consensus 226 vm~~G~ive~g~~~~~~~~p~hpyt~~ll~ 255 (326)
T PRK11022 226 VMYAGQVVETGKAHDIFRAPRHPYTQALLR 255 (326)
T ss_pred EEECCEEEEECCHHHHhhCCCChHHHHHHH
Confidence 99999999999998876 467899988865
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-54 Score=397.23 Aligned_cols=223 Identities=38% Similarity=0.611 Sum_probs=195.7
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhc
Q 018638 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~ 165 (352)
||+++||+++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 58999999999876 8999999999999999999999999999999999999999999999999875432111 111
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+.+|+|+||++.+|+.+|++||+.+..... +.......+.+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-- 157 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIA-GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN-- 157 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc--
Confidence 336999999999999899999998865322 23344445678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..+.++|++++++ | .|||++||+++++..+||++++|++|++++.
T Consensus 158 -----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 158 -----NPKVLLCDEATSALDPETTQSILALLRDINRELG----------LTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred -----CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 69999999999999999999999999999775 5 5999999999999999999999999999999
Q ss_pred ecccccc
Q 018638 325 GMTHEFT 331 (352)
Q Consensus 325 g~~~~~~ 331 (352)
|+++++.
T Consensus 223 ~~~~~~~ 229 (233)
T cd03258 223 GTVEEVF 229 (233)
T ss_pred cCHHHHh
Confidence 9776654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=416.27 Aligned_cols=239 Identities=26% Similarity=0.470 Sum_probs=207.9
Q ss_pred cceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCEeCCCCCCh
Q 018638 89 DVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISD 161 (352)
Q Consensus 89 ~~~l~~~nls~~y~----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~~~~~~~~~ 161 (352)
.++|+++||+++|+ ...+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|+|+|+++......
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 46899999999994 357999999999999999999999999999999999999996 99999999998654322
Q ss_pred hh--hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc---ccccCCCCCChHHHHH
Q 018638 162 EE--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKKR 234 (352)
Q Consensus 162 ~~--~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~---~~~~~~~~LSGGqrQR 234 (352)
.. .++.+|+||||++ .++|.+|+.+|+.+.+..+.....++..+++.++++.+||.+ ..+++|++||||||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 21 1223699999998 688999999999876644433455566677899999999964 4578999999999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
|+|||||+. +|++||+||||++||+.++..++++|++++++ | .|+|+||||++.+.++||||
T Consensus 170 v~IArAL~~-------~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g----------~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 170 VMIAMALLC-------RPKLLIADEPTTALDVTVQAQIMTLLNELKREFN----------TAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred HHHHHHHHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEECCHHHHHHhCCEE
Confidence 999999996 69999999999999999999999999999875 5 69999999999999999999
Q ss_pred EEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 314 IFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++|++|+|++.|+++++. .+.+++++.++..
T Consensus 233 ~vm~~G~ive~g~~~~i~~~p~~pyt~~l~~~ 264 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFYQPSHPYSIGLLNA 264 (330)
T ss_pred EEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999998875 4678999988754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-55 Score=393.15 Aligned_cols=220 Identities=32% Similarity=0.572 Sum_probs=202.4
Q ss_pred eEEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~~~~-~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
||++.+++|+|+... +++||||++++||++||+|||||||||+||+|++|+.|++|.|+++|.+....+ ...+++|
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p---~~vrr~I 77 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP---SFVRRKI 77 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh---HHHhhhc
Confidence 689999999999865 999999999999999999999999999999999999999999999999865432 2234579
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|.+|.+..+|..||++|||.|....+ ++...+++.+++++.+.++|.+.++++..+||.||||||+|||||++
T Consensus 78 GVl~~e~glY~RlT~rEnl~~Fa~L~-~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh------ 150 (245)
T COG4555 78 GVLFGERGLYARLTARENLKYFARLN-GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVH------ 150 (245)
T ss_pred ceecCCcChhhhhhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhc------
Confidence 99998889999999999999876444 46777888999999999999999999999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++++|||||+|||..+++.+.+.|++++.+| .+||++||.|++++.+||||++|++|+++..|++++
T Consensus 151 -~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg----------r~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 151 -DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG----------RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred -CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC----------cEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHH
Confidence 599999999999999999999999999998877 599999999999999999999999999999999988
Q ss_pred cc
Q 018638 330 FT 331 (352)
Q Consensus 330 ~~ 331 (352)
+.
T Consensus 220 l~ 221 (245)
T COG4555 220 LD 221 (245)
T ss_pred HH
Confidence 64
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=398.95 Aligned_cols=240 Identities=34% Similarity=0.548 Sum_probs=205.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC---------C
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI---------S 160 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~---------~ 160 (352)
.+|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 4599999999999889999999999999999999999999999999999999999999999998764210 0
Q ss_pred --hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccc-ccCCCCCChHHHHHHHH
Q 018638 161 --DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVAL 237 (352)
Q Consensus 161 --~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~-~~~~~~LSGGqrQRvaI 237 (352)
.....+.+++|+||++.+++.+||+||+.++..........+..+++.++++.+|+.+.. ++++.+||||||||++|
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l 163 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 111123469999999999998999999987542222234445566788999999998764 88999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+||||++|+
T Consensus 164 aral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tiiivsH~~~~~~~~~d~i~~l~ 226 (257)
T PRK10619 164 ARALAM-------EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEG----------KTMVVVTHEMGFARHVSSHVIFLH 226 (257)
T ss_pred HHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEE
Confidence 999997 699999999999999999999999999998766 599999999999999999999999
Q ss_pred CCeEEEeeccccccc-CCcHHHHHHhcCCC
Q 018638 318 EGKIVWQGMTHEFTS-SSNPIVQQFASGSL 346 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~-~~~~~~~~~~~~~~ 346 (352)
+|++++.|+++++.. +.++..++++.+++
T Consensus 227 ~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (257)
T PRK10619 227 QGKIEEEGAPEQLFGNPQSPRLQQFLKGSL 256 (257)
T ss_pred CCEEEEeCCHHHhhhCccCHHHHHHhhccC
Confidence 999999998887653 34567777876653
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=393.90 Aligned_cols=235 Identities=29% Similarity=0.519 Sum_probs=212.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|.++||.|+|+.++++++|||+|++||++||+|||||||||.+.++.||.+||+|+|+++|.|++.++- ..+++..|
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm-~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM-HKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCCh-HHHhhcCc
Confidence 45899999999999999999999999999999999999999999999999999999999999999987643 34456689
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||+||++..|..+||+|||...+..... ....+.+.+++++|+.|++.+..+++..+||||||+|+.|||||+.
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~----- 156 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA----- 156 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc-----
Confidence 9999999999999999999887754432 2223445567899999999999999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|+++||||||+|+||.+..++.++++.|+..| ..|+++-|+..+...+|||.+++.+|+|.++|+++
T Consensus 157 --~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg----------iGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ 224 (243)
T COG1137 157 --NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG----------IGVLITDHNVRETLDICDRAYIISDGKVLAEGSPE 224 (243)
T ss_pred --CCCEEEecCCccCCCchhHHHHHHHHHHHHhCC----------ceEEEccccHHHHHhhhheEEEEecCeEEecCCHH
Confidence 699999999999999999999999999999887 68999999999999999999999999999999999
Q ss_pred ccccCCcHHHHHHhcC
Q 018638 329 EFTSSSNPIVQQFASG 344 (352)
Q Consensus 329 ~~~~~~~~~~~~~~~~ 344 (352)
++. .++.+++.+.|
T Consensus 225 ei~--~n~~Vr~~YLG 238 (243)
T COG1137 225 EIV--NNEDVRRVYLG 238 (243)
T ss_pred HHh--cChhhhhhccc
Confidence 986 35778887765
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=395.71 Aligned_cols=235 Identities=31% Similarity=0.501 Sum_probs=200.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC--C--hhhhcc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI--S--DEEISG 166 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~--~--~~~~~~ 166 (352)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .....+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 689999999999889999999999999999999999999999999999999999999999999763110 0 111123
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
.+|+|+||++.+|+.+||+||+.+......+....+..+++.++++.+|+.+..++.+.+||||||||++|||||+.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~--- 158 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM--- 158 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc---
Confidence 36999999999999899999997532222223344455678899999999989999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..+.++|++++++| .|+|++|||++++.++||++++|++|++++.|+
T Consensus 159 ----~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~ 224 (242)
T PRK11124 159 ----EPQVLLFDEPTAALDPEITAQIVSIIRELAETG----------ITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred ----CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 599999999999999999999999999997666 599999999999999999999999999999998
Q ss_pred ccccccCCcHHHHHHh
Q 018638 327 THEFTSSSNPIVQQFA 342 (352)
Q Consensus 327 ~~~~~~~~~~~~~~~~ 342 (352)
++++..+.++...+++
T Consensus 225 ~~~~~~~~~~~~~~~~ 240 (242)
T PRK11124 225 ASCFTQPQTEAFKNYL 240 (242)
T ss_pred HHHhcCcccHHHHHhh
Confidence 8776554455555554
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=424.45 Aligned_cols=237 Identities=34% Similarity=0.568 Sum_probs=204.1
Q ss_pred ceEEEEeEEEEeCCee------------------------eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc
Q 018638 90 VLIDCRNVYKSFGEKH------------------------ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK 145 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~------------------------~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~ 145 (352)
.+|+++||+|.||..+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 3577777777776543 8999999999999999999999999999999999999999
Q ss_pred eEEEECCEeCCCCCChh--hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC
Q 018638 146 GEVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223 (352)
Q Consensus 146 G~I~i~G~~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~ 223 (352)
|+|+|+|+++....... ...+.++||+||++.+|+.+||+||+.+++... +...++..+++.++++.+||.++.+++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~-~~~~~~~~~~~~e~L~~~gL~~~~~~~ 161 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA-GINAEERREKALDALRQVGLENYAHSY 161 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCChhhhcC
Confidence 99999999876432211 112346999999999999999999999876432 234455566788999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCC
Q 018638 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 224 ~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHd 302 (352)
|.+|||||||||+|||||+. +|++|||||||++||+.++..++++|.+++++ + +|||+||||
T Consensus 162 ~~~LSgGq~QRv~LArAL~~-------~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g----------~TIIivTHd 224 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAI-------NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ----------RTIVFISHD 224 (400)
T ss_pred cccCCHHHHHHHHHHHHHhc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC----------CeEEEEECC
Confidence 99999999999999999997 59999999999999999999999999999764 5 599999999
Q ss_pred HHHHHhhcCEEEEEeCCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 303 HSTIRRAVDRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 303 l~~i~~~aDrv~vL~~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++++.++||||++|++|+|++.|+++++.. +.++++..|+.+
T Consensus 225 ~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~~ 267 (400)
T PRK10070 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRG 267 (400)
T ss_pred HHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHHhc
Confidence 999999999999999999999998888754 456778888764
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=407.49 Aligned_cols=222 Identities=35% Similarity=0.586 Sum_probs=194.1
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||+++|++ +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999974 46999999999999999999999999999999999999999999999999875421111112
Q ss_pred cceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK--GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+||||||++ .+|+ .||+||+.|+.... +.++++..+++.++++.+||. ++.++++.+||||||||++|||||
T Consensus 82 ~~~ig~v~q~~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFE-ETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred hhceEEEecCchhcccc-ccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH
Confidence 34799999997 3454 79999999865332 355666677889999999997 678999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||+|||+.++..++++|++++++ | .|||+||||++++..+||||++|++|+
T Consensus 160 ~~-------~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~drv~~l~~G~ 222 (287)
T PRK13637 160 AM-------EPKILILDEPTAGLDPKGRDEILNKIKELHKEYN----------MTIILVSHSMEDVAKLADRIIVMNKGK 222 (287)
T ss_pred Hc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 97 69999999999999999999999999999875 5 599999999999999999999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (287)
T PRK13637 223 CELQGTPREVF 233 (287)
T ss_pred EEEECCHHHHH
Confidence 99999888764
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=393.75 Aligned_cols=219 Identities=38% Similarity=0.593 Sum_probs=188.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC-----CCCceEEEECCEeCCCCCChhhhcc
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~-----~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|+++|+++..........+
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999999888999999999999999999999999999999999999 9999999999998754321011123
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC--CCCCChHHHHHHHHHHHHhcc
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL--PSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~--~~~LSGGqrQRvaIArAL~~~ 244 (352)
.+++|+||++.+| .+||+||+.++..........+..+++.++++.+|+.+..++. +.+|||||||||+|||||+.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~- 158 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN- 158 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc-
Confidence 4699999999888 6899999988653222112223456788999999998877776 59999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..+.++|++++++ .|||++|||++++..+|||+++|++|++++.
T Consensus 159 ------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 159 ------EPEVLLLDEPTSALDPISTAKIEELIAELKKE-----------YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred ------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-----------cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 69999999999999999999999999999765 3999999999999999999999999999999
Q ss_pred ecccc
Q 018638 325 GMTHE 329 (352)
Q Consensus 325 g~~~~ 329 (352)
|++++
T Consensus 222 g~~~~ 226 (227)
T cd03260 222 GPTEQ 226 (227)
T ss_pred cCccc
Confidence 97655
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=425.15 Aligned_cols=224 Identities=30% Similarity=0.486 Sum_probs=199.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .... +++|
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~-~~~~-~~~i 79 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS-ARAA-SRRV 79 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCC-HHHH-hcce
Confidence 4799999999999999999999999999999999999999999999999999999999999999876532 2222 3469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcC-CCC--HHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENS-KMR--DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~-~~~--~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
|||+|++.+++.+||+||+.++.+.+. ... ..+..+++.++++.+|+.++.++++.+|||||||||+|||||++
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~--- 156 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ--- 156 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc---
Confidence 999999999888999999998653221 111 23345678999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++.+++++|++++++| .|||++|||++++.++|||+++|++|++++.|+
T Consensus 157 ----~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g----------~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 157 ----ATPVLLLDEPTASLDINHQVRTLELVRRLVDDG----------KTAVAAIHDLDLAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred ----CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 699999999999999999999999999998765 599999999999999999999999999999999
Q ss_pred cccccc
Q 018638 327 THEFTS 332 (352)
Q Consensus 327 ~~~~~~ 332 (352)
++++..
T Consensus 223 ~~ev~~ 228 (402)
T PRK09536 223 PADVLT 228 (402)
T ss_pred HHHHhC
Confidence 888764
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=388.00 Aligned_cols=212 Identities=36% Similarity=0.602 Sum_probs=189.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .+.+++|
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~---~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-P---KDRDIAM 76 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-c---ccceEEE
Confidence 47899999999889999999999999999999999999999999999999999999999999875321 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+++.+|++||+.++.... ....++..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~-------~ 148 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVR-------E 148 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998864322 23445556678899999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||+|||+.++..+.++|++++++ + .|||++|||++++..+||++++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG----------TTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999865 5 59999999999999999999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=390.24 Aligned_cols=214 Identities=34% Similarity=0.631 Sum_probs=190.5
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 91 ~l~~~nls~~y~~~----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
||+++||+++|+++ ++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++... .... +
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~-~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE--PAEA-R 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC--HHHH-H
Confidence 58999999999876 799999999999999999999999999999999999999999999999987531 2222 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
.+++|+||++.+|+.+||+||+.+....+ +....+..+++.++++.+|+.+..++.+.+||||||||++|||||+.
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--- 153 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVH--- 153 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhc---
Confidence 46999999999999899999998765322 23444556778899999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||++||+.++..+.++|++++++| .|||+||||++++..+|||+++|++|++++.|
T Consensus 154 ----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 ----DPPVLLLDEPTTGLDVMATRALREFIRQLRALG----------KCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred ----CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 699999999999999999999999999997666 59999999999999999999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=391.35 Aligned_cols=219 Identities=31% Similarity=0.525 Sum_probs=190.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP-PHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCC-HHHHHhcCeEE
Confidence 57899999999888999999999999999999999999999999999999999999999999875432 22222336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc-CCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~-gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
+||++.+|+.+|++||+.++..... ..+..+++.++++.+ ++.+..++++.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 149 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS------- 149 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999998999999988653221 223345567788888 57888899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|++|||||||+|||+.++..++++|+++++++ .|||++|||++++.++||++++|++|++++.|+++++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG----------VTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 699999999999999999999999999997665 5999999999999999999999999999999876654
Q ss_pred c
Q 018638 331 T 331 (352)
Q Consensus 331 ~ 331 (352)
.
T Consensus 220 ~ 220 (222)
T cd03224 220 L 220 (222)
T ss_pred h
Confidence 3
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=397.45 Aligned_cols=223 Identities=34% Similarity=0.536 Sum_probs=192.9
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccce
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~ 168 (352)
||+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...+.+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 588999999998 778999999999999999999999999999999999999999999999999875422111 111336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhc-------CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYEN-------SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~-------~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
++|+||++.+|+.+||+||+.++.... ......+..+++.++++.+|+.+..++.+.+|||||||||+|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 999999999998899999998753211 0111223356688899999999889999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||++||+.++..+.++|+++.++ | .|||+||||++++.++||++++|++|+
T Consensus 161 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~tH~~~~~~~~~d~v~~l~~G~ 223 (243)
T TIGR02315 161 AQ-------QPDLILADEPIASLDPKTSKQVMDYLKRINKEDG----------ITVIINLHQVDLAKKYADRIVGLKAGE 223 (243)
T ss_pred hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 97 69999999999999999999999999999765 5 599999999999999999999999999
Q ss_pred EEEeeccccc
Q 018638 321 IVWQGMTHEF 330 (352)
Q Consensus 321 iv~~g~~~~~ 330 (352)
+++.|+++++
T Consensus 224 i~~~~~~~~~ 233 (243)
T TIGR02315 224 IVFDGAPSEL 233 (243)
T ss_pred EEecCCHHHh
Confidence 9999987775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-53 Score=395.95 Aligned_cols=236 Identities=35% Similarity=0.522 Sum_probs=203.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC----------C-
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI----------S- 160 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~----------~- 160 (352)
|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... .
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 57999999999888999999999999999999999999999999999999999999999999875321 0
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHH
Q 018638 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.....+.+++|+||++.+|+.+|+.||+.++.....+....+..+.+.++++.+|+.+..++.+.+||||||||++||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 00112346999999999998899999998753222223444555678899999999989999999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
|+. +|++|||||||++||+.++..+.++|+++.++ | .|+|++|||++++..+|||+++|++|
T Consensus 161 l~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T TIGR03005 161 LAM-------RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHD----------LTMLLVTHEMGFAREFADRVCFFDKG 223 (252)
T ss_pred HHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 997 69999999999999999999999999999765 5 59999999999999999999999999
Q ss_pred eEEEeeccccccc-CCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++++.|+++++.. +.++.+..++.+
T Consensus 224 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 249 (252)
T TIGR03005 224 RIVEQGKPDEIFRQPKEERTREFLSK 249 (252)
T ss_pred EEEEeCCHHHHhcCCCcHHHHHHHhh
Confidence 9999998887653 456777777653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-53 Score=412.43 Aligned_cols=238 Identities=24% Similarity=0.365 Sum_probs=201.9
Q ss_pred ceEEEEeEEEEe----CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC----CCceEEEECCEeCCCCCCh
Q 018638 90 VLIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA----PDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 90 ~~l~~~nls~~y----~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~----p~~G~I~i~G~~~~~~~~~ 161 (352)
++|+++||+++| +...+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|+|+|+++......
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 369999999999 44679999999999999999999999999999999999997 5899999999997654322
Q ss_pred hh--hccceEEEEecCCC--CCCCCCHHHHHHhhhhhc--CC---CCHHHHHHHHHHHHHHcCCCc---ccccCCCCCCh
Q 018638 162 EE--ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYEN--SK---MRDEQISELVKENLAAVGLKG---VEDRLPSELSG 229 (352)
Q Consensus 162 ~~--~~~~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~--~~---~~~~~~~~~v~~~l~~~gL~~---~~~~~~~~LSG 229 (352)
.. ..+.+|+||||++. +++.+||.+|+.+.+..+ .+ ....+..+++.++|+.+||.+ ..+++|.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 21 12336999999985 678899999997643211 11 112334567889999999974 46899999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHh
Q 018638 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRR 308 (352)
Q Consensus 230 GqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~ 308 (352)
||||||+|||||+. +|++|||||||++||+.++.+++++|++++++ | .|||+||||++.+.+
T Consensus 162 G~~QRv~iArAL~~-------~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g----------~tii~itHdl~~v~~ 224 (330)
T PRK15093 162 GECQKVMIAIALAN-------QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNN----------TTILLISHDLQMLSQ 224 (330)
T ss_pred HHHHHHHHHHHHHC-------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHH
Confidence 99999999999996 69999999999999999999999999999875 5 699999999999999
Q ss_pred hcCEEEEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 309 AVDRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 309 ~aDrv~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+||||++|++|+|++.|+++++. .+.+++++.++..
T Consensus 225 ~~dri~vm~~G~ive~g~~~~i~~~p~~~y~~~ll~~ 261 (330)
T PRK15093 225 WADKINVLYCGQTVETAPSKELVTTPHHPYTQALIRA 261 (330)
T ss_pred hCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999988875 4568888887764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=394.89 Aligned_cols=222 Identities=35% Similarity=0.549 Sum_probs=191.8
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh-hhhccceE
Q 018638 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD-EEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~-~~~~~~~i 169 (352)
|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ....+.++
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 7899999999999999999999999999999999999999999999999987543210 11123369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhc-------CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYEN-------SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~-------~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+|+||++.+|+.+||+||+.++.... .........+++.++++.+++.+..++.+.+|||||||||+|||||+
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 99999999998899999998754210 01112233456788999999998899999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
. +|++|||||||+|||+.++..+.++|++++++ | .|||++|||++++..+||++++|++|++
T Consensus 161 ~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~tH~~~~~~~~~d~v~~l~~G~i 223 (241)
T cd03256 161 Q-------QPKLILADEPVASLDPASSRQVMDLLKRINREEG----------ITVIVSLHQVDLAREYADRIVGLKDGRI 223 (241)
T ss_pred c-------CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 7 69999999999999999999999999999764 5 5999999999999999999999999999
Q ss_pred EEeeccccc
Q 018638 322 VWQGMTHEF 330 (352)
Q Consensus 322 v~~g~~~~~ 330 (352)
++.|+++++
T Consensus 224 ~~~~~~~~~ 232 (241)
T cd03256 224 VFDGPPAEL 232 (241)
T ss_pred EeecCHHHh
Confidence 999987775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=388.26 Aligned_cols=211 Identities=39% Similarity=0.629 Sum_probs=188.4
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 92 IDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 92 l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-------~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-------PGP 73 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-------ccC
Confidence 578999999987 789999999999999999999999999999999999999999999999998642 123
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+++|+||++.+|+.+|++||+.++.... +.......+++.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~---- 148 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ-GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAV---- 148 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc----
Confidence 6999999999998899999998865322 23334445678899999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe--CCeEEEe
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY--EGKIVWQ 324 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~--~G~iv~~ 324 (352)
+|++|||||||+|||+.++..+.++|+++.++ + .|||+|||+++++..+||++++|+ +|+++++
T Consensus 149 ---~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 149 ---DPDVLLLDEPFSALDALTREQLQEELLDIWRETG----------KTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred ---CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 69999999999999999999999999999654 5 599999999999999999999999 7999988
Q ss_pred ecc
Q 018638 325 GMT 327 (352)
Q Consensus 325 g~~ 327 (352)
++.
T Consensus 216 ~~~ 218 (220)
T cd03293 216 VEV 218 (220)
T ss_pred EEe
Confidence 754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-53 Score=395.69 Aligned_cols=236 Identities=28% Similarity=0.459 Sum_probs=201.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.........
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 579999999999988899999999999999999999999999999999999997 489999999986421111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CcccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL----KGVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL----~~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+|+|+||++.+|+ +||+||+.++.............+++.++++.+++ .+..++++.+|||||||||+||||
T Consensus 86 ~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara 164 (254)
T PRK14273 86 LRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART 164 (254)
T ss_pred HhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 2346999999998885 89999999875332212334456678889999987 356788999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..++++|+++++ + .|||++||+++++.++|||+++|++|+
T Consensus 165 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tvii~sH~~~~~~~~~d~i~~l~~G~ 226 (254)
T PRK14273 165 LAI-------EPNVILMDEPTSALDPISTGKIEELIINLKE-S----------YTIIIVTHNMQQAGRISDRTAFFLNGC 226 (254)
T ss_pred HHc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 997 5999999999999999999999999999964 4 499999999999999999999999999
Q ss_pred EEEeecccccc-cCCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+++.|++.++. .+.++++++++.+
T Consensus 227 i~~~g~~~~~~~~~~~~~~~~~~~~ 251 (254)
T PRK14273 227 IEEESSTDELFFNPKNTKTEEYISG 251 (254)
T ss_pred EEEeCCHHHHHhCCCChHHHHhhcc
Confidence 99999888875 4567788887754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-53 Score=393.15 Aligned_cols=232 Identities=36% Similarity=0.595 Sum_probs=200.4
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.+++
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQD-PVEL-RRKIG 78 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCC-hHHh-hcceE
Confidence 478999999988 78999999999999999999999999999999999999999999999999875432 1222 33699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc--ccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG--VEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~--~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|+||++.+|+.+||+||+.++.... +....+..+.+.++++.+|+.. +.++++.+|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~----- 152 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLL-KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAA----- 152 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhc-----
Confidence 9999999998899999998864322 2334445567889999999985 8899999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..+.++|++++++ | .|||++||+++.+..+||+|++|++|++++.|++
T Consensus 153 --~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 220 (242)
T cd03295 153 --DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG----------KTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTP 220 (242)
T ss_pred --CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 69999999999999999999999999999765 5 5999999999999999999999999999999988
Q ss_pred ccccc-CCcHHHHHHhc
Q 018638 328 HEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 328 ~~~~~-~~~~~~~~~~~ 343 (352)
+++.. ..++....++.
T Consensus 221 ~~~~~~~~~~~~~~~~~ 237 (242)
T cd03295 221 DEILRSPANDFVAEFVG 237 (242)
T ss_pred HHHHcCCCChHHHHHhC
Confidence 77643 34456566553
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-53 Score=402.07 Aligned_cols=221 Identities=30% Similarity=0.515 Sum_probs=193.8
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~-~~~ 80 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE-NEKWV-RSK 80 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCC-CHHHH-Hhh
Confidence 4799999999996 56799999999999999999999999999999999999999999999999987542 22222 336
Q ss_pred EEEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 169 IGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 169 ig~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
|||+||++. .++.+||+||+.|+... .+....+..+++.++++.+||.+..+++|.+|||||||||+|||||+.
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~---- 155 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVN-MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM---- 155 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc----
Confidence 999999973 33457999999986532 234455556778899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+.++..++++|++++++| .|||++|||++++.++||||++|++|++++.|++
T Consensus 156 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 222 (274)
T PRK13647 156 ---DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG----------KTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222 (274)
T ss_pred ---CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 699999999999999999999999999998765 5999999999999999999999999999999987
Q ss_pred ccc
Q 018638 328 HEF 330 (352)
Q Consensus 328 ~~~ 330 (352)
+++
T Consensus 223 ~~~ 225 (274)
T PRK13647 223 SLL 225 (274)
T ss_pred HHh
Confidence 654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=389.79 Aligned_cols=218 Identities=34% Similarity=0.599 Sum_probs=190.3
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--
Q 018638 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-- 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-- 163 (352)
++|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 57999999999974 579999999999999999999999999999999999999999999999998764322111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
..+.+|+|+||++.+|+.+|++||+.+..... ....++..+++.++++.+||.+..++.+.+||||||||++|||||+.
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIG-KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 11236999999999999899999998865322 23344556678899999999988999999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|++|||||||+|||+.++..+.++|++++++ | .|||+||||++++..+ |++++|++|+|+
T Consensus 163 -------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tvii~sH~~~~~~~~-~~~~~l~~G~i~ 224 (233)
T PRK11629 163 -------NPRLVLADEPTGNLDARNADSIFQLLGELNRLQG----------TAFLVVTHDLQLAKRM-SRQLEMRDGRLT 224 (233)
T ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHhh-CEEEEEECCEEE
Confidence 69999999999999999999999999999764 5 5999999999999875 799999999999
Q ss_pred Eeec
Q 018638 323 WQGM 326 (352)
Q Consensus 323 ~~g~ 326 (352)
+.++
T Consensus 225 ~~~~ 228 (233)
T PRK11629 225 AELS 228 (233)
T ss_pred EEec
Confidence 8774
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-53 Score=393.62 Aligned_cols=224 Identities=25% Similarity=0.482 Sum_probs=197.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.+++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP-LHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHHHHhCeE
Confidence 699999999999889999999999999999999999999999999999999999999999999875432 2222234699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+++.+||+||+.+..........++..+++.++++.+|+.+..++.+.+|||||||||+|||||+.
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA------- 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999998899999998754222122334455678899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|++|||||||++||+.++..+.++|++++++| .|||++||+++.+..+||++++|++|++++.|+++++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSG----------LGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 699999999999999999999999999998766 5999999999999999999999999999999988877
Q ss_pred cc
Q 018638 331 TS 332 (352)
Q Consensus 331 ~~ 332 (352)
..
T Consensus 225 ~~ 226 (241)
T PRK10895 225 LQ 226 (241)
T ss_pred hc
Confidence 53
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=395.77 Aligned_cols=236 Identities=28% Similarity=0.456 Sum_probs=201.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++........
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 4579999999999988899999999999999999999999999999999999985 89999999998643211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+++|+||++.+|+ +|++||+.+..... +.+.++..+++.++++.+++. +..++++.+|||||||||+|||
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 167 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIAR 167 (258)
T ss_pred HHhhhEEEEecCCccCc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHH
Confidence 12336999999999988 89999998865322 234444556688899999983 4578899999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||+|||+.++..+.++|+++++ + .|||++|||++++.++|||+++|++|
T Consensus 168 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~----------~tiiivsH~~~~~~~~~d~i~~l~~G 229 (258)
T PRK14268 168 TLAV-------KPKIILFDEPTSALDPISTARIEDLIMNLKK-D----------YTIVIVTHNMQQAARISDYTGFFLMG 229 (258)
T ss_pred HHHc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-C----------CEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9997 6999999999999999999999999999864 4 59999999999999999999999999
Q ss_pred eEEEeecccccc-cCCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++++.|+++++. .+.++++++++.+
T Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK14268 230 ELIEFGQTRQIFHNPREKSTEDYITG 255 (258)
T ss_pred EEEEeCCHHHHhcCCCCHHHHHHhhc
Confidence 999999888875 3456778887754
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=388.80 Aligned_cols=211 Identities=42% Similarity=0.634 Sum_probs=184.1
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--hhc
Q 018638 92 IDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EIS 165 (352)
Q Consensus 92 l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~~~ 165 (352)
|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 578999999986 78999999999999999999999999999999999999999999999999875432111 112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+.+++|+||++.+|+.+||+||+.++.... +....+..+++.++++.+||++..++.+.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-- 157 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLA-GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN-- 157 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc--
Confidence 336999999999999899999999865322 23333445678899999999988899999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||+|||+.++..+.++|+++++ ++ .|||+||||++++. +||++++|++|++
T Consensus 158 -----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 -----DPKIILADEPTGNLDSETGKEVMELLRELNKEAG----------TTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred -----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 6999999999999999999999999999977 35 59999999999987 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=388.55 Aligned_cols=217 Identities=35% Similarity=0.564 Sum_probs=191.5
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .+.++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~-~~~~i 77 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD--RKA-ARQSL 77 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc--hHH-HhhhE
Confidence 578999999987 7899999999999999999999999999999999999999999999999987532 122 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+++.+|++||+.+....+ +....+..+++.++++.++|.+..++.+.+|||||||||+|||||+.
T Consensus 78 ~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------ 150 (220)
T cd03263 78 GYCPQFDALFDELTVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG------ 150 (220)
T ss_pred EEecCcCCccccCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc------
Confidence 99999999998899999998865332 23344455678899999999988899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+.++..+.+.|+++++ + .|||++||+++.+.++||++++|++|++++.|++++
T Consensus 151 -~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 151 -GPSVLLLDEPTSGLDPASRRAIWDLILEVRK-G----------RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred -CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-C----------CEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 6999999999999999999999999999875 3 499999999999999999999999999999987665
Q ss_pred c
Q 018638 330 F 330 (352)
Q Consensus 330 ~ 330 (352)
+
T Consensus 219 ~ 219 (220)
T cd03263 219 L 219 (220)
T ss_pred c
Confidence 3
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=391.15 Aligned_cols=224 Identities=29% Similarity=0.481 Sum_probs=195.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.++
T Consensus 1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLP-EHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCC-HHHHHhcCe
Confidence 3689999999999888999999999999999999999999999999999999999999999999865432 222223369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcC-------CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENS-------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~-------~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+|+||++.+|+.+||+||+.++..... ....++..+++.++++.+|+.+..++.+.+|||||||||+|||||+
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~ 159 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM 159 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999999999999999988643111 0122334567889999999999899999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||++||+.++..+.++|+++.+ + .|||++||+++++..+|||+++|++|+++
T Consensus 160 ~-------~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 160 Q-------DPKLLLLDEPVAGMTDEETEKTAELLKSLAG-K----------HSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred c-------CCCEEEecCCccCCCHHHHHHHHHHHHHHhc-C----------CEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 7 6999999999999999999999999999975 4 49999999999999999999999999999
Q ss_pred Eeeccccccc
Q 018638 323 WQGMTHEFTS 332 (352)
Q Consensus 323 ~~g~~~~~~~ 332 (352)
+.|+++++..
T Consensus 222 ~~~~~~~~~~ 231 (242)
T TIGR03411 222 AEGSLDQVQA 231 (242)
T ss_pred eeCCHHHHhc
Confidence 9998877753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=430.42 Aligned_cols=241 Identities=33% Similarity=0.567 Sum_probs=211.8
Q ss_pred CcceEEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCC
Q 018638 88 GDVLIDCRNVYKSFGE-----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~-----------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~ 156 (352)
..++++++||+|.|.. ..+++||||+|.+||++||||+||||||||.|+|+||++|++|+|.++|.+ .
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~ 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-L 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-c
Confidence 5688999999999973 368999999999999999999999999999999999999999999999987 2
Q ss_pred CCCChh-hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHH
Q 018638 157 GLISDE-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMK 232 (352)
Q Consensus 157 ~~~~~~-~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqr 232 (352)
...... ...++++-+||||| .|.|.+||+++|..++..+......+..+++.++++++||.. +++++|++||||||
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 222211 11234689999998 689999999999998876554445566778999999999975 89999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
|||+|||||+. +|++|++|||||+||+..+..+.++|++|.++-+ .|+|+||||+..+..+|||
T Consensus 436 QRvaIARALa~-------~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g---------~t~lfISHDl~vV~~i~dr 499 (539)
T COG1123 436 QRVAIARALAL-------EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG---------LTYLFISHDLAVVRYIADR 499 (539)
T ss_pred HHHHHHHHHhc-------CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhC---------CEEEEEeCCHHHHHhhCce
Confidence 99999999986 6999999999999999999999999999988731 6999999999999999999
Q ss_pred EEEEeCCeEEEeecccccc-cCCcHHHHHHhcCC
Q 018638 313 LIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 345 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~~ 345 (352)
|+||++|+||+.|++++++ .+.|+|++.++...
T Consensus 500 v~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~av 533 (539)
T COG1123 500 VAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAAV 533 (539)
T ss_pred EEEEECCeEEEeCCHHHHhcCCCChHHHHHHHhc
Confidence 9999999999999888876 46899999998753
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=393.04 Aligned_cols=236 Identities=29% Similarity=0.459 Sum_probs=198.4
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++........
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 467999999999998889999999999999999999999999999999999974 689999999998743111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+|+|+||++.+|+ .||+||+.++.........+...+++.++++.+++.+ ..++.+.+|||||||||+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 12336999999999998 5999999887533221233344567888999999853 468889999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++.++||||++|++|
T Consensus 163 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tvii~tH~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14242 163 ALAV-------EPEVLLMDEPASALDPIATQKIEELIHELKA-R----------YTIIIVTHNMQQAARVSDVTAFFYMG 224 (253)
T ss_pred HHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C----------CeEEEEEecHHHHHHhCCEEEEEECC
Confidence 9997 6999999999999999999999999999954 4 49999999999999999999999999
Q ss_pred eEEEeeccccccc-CCcHHHHHHhc
Q 018638 320 KIVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 320 ~iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
++++.|+++++.. +.+..+++++.
T Consensus 225 ~i~~~g~~~~~~~~~~~~~~~~~~~ 249 (253)
T PRK14242 225 KLIEVGPTEQIFTRPREKQTEDYIT 249 (253)
T ss_pred EEEEeCCHHHHHcCCCchHHHHHhh
Confidence 9999998888653 34566666654
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-53 Score=385.46 Aligned_cols=213 Identities=40% Similarity=0.653 Sum_probs=186.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 47899999999888999999999999999999999999999999999999999999999999864211111112346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+|++||+.++.........++..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 153 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM-------N 153 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998864222223444455678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
|++|||||||+|||+.++..+.++|++++++| .|||++||+++++.++||++++|++|++
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEG----------MTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998765 5999999999999999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-53 Score=404.21 Aligned_cols=221 Identities=34% Similarity=0.527 Sum_probs=192.7
Q ss_pred EEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC--hhhh
Q 018638 92 IDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEEI 164 (352)
Q Consensus 92 l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--~~~~ 164 (352)
|+++||+++|++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999974 469999999999999999999999999999999999999999999999998742111 1111
Q ss_pred ccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 165 ~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
.+.+||||||++ .+|+ .||+||+.|+... .+.+.++..+++.++++.+||. ...++++.+|||||||||+|||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFE-ETVEKDICFGPMN-FGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHhhEEEEeeCchhhhhh-hhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 233699999997 4665 6999999987532 2345556667789999999996 678999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||++||+.++..++++|++++++ | .|||+||||++++.++||||++|++|+
T Consensus 161 ~~-------~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g----------~tviiitHd~~~~~~~~drv~~l~~G~ 223 (290)
T PRK13634 161 AM-------EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG----------LTTVLVTHSMEDAARYADQIVVMHKGT 223 (290)
T ss_pred Hc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 96 69999999999999999999999999999765 5 599999999999999999999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
+++.|+++++.
T Consensus 224 i~~~g~~~~~~ 234 (290)
T PRK13634 224 VFLQGTPREIF 234 (290)
T ss_pred EEEECCHHHHh
Confidence 99999887764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-53 Score=406.22 Aligned_cols=219 Identities=33% Similarity=0.555 Sum_probs=196.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+++++|++|+|+++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ... .+.++|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~--~~~-~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN--PKE-VQRNIG 78 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC--hHH-HHhceE
Confidence 48999999999999999999999999999999999999999999999999999999999999987531 222 234699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+|+.+||.||+.+....+ +.+.++..+++.++++.+||.+..++++.+||||||||++|||||++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~------- 150 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIY-GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIH------- 150 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999999999998765332 23445556678899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|++|||||||+|||+.++..++++|+++++ + .|||++||+++++.++||||++|++|++++.|+++++
T Consensus 151 ~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~----------~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (301)
T TIGR03522 151 DPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-D----------KTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219 (301)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-C----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 6999999999999999999999999999864 4 4999999999999999999999999999999988876
Q ss_pred c
Q 018638 331 T 331 (352)
Q Consensus 331 ~ 331 (352)
.
T Consensus 220 ~ 220 (301)
T TIGR03522 220 S 220 (301)
T ss_pred H
Confidence 3
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-53 Score=385.69 Aligned_cols=212 Identities=40% Similarity=0.632 Sum_probs=186.2
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccce
Q 018638 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~ 168 (352)
||+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... ...+.+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 58999999999 4678999999999999999999999999999999999999999999999999875432111 112336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
++|+||++.+|+.+|+.||+.+..... +.......+++.++++.+++.+..++.+.+|||||||||+|||||+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~----- 154 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN----- 154 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC-----
Confidence 999999999998899999998865322 23344455678899999999988899999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||++||+++++..+||++++|++|+
T Consensus 155 --~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 155 --SPPLLLADEPTGNLDPDLSERILDLLKRLNKRG----------TTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 699999999999999999999999999997766 599999999999999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-53 Score=407.13 Aligned_cols=223 Identities=34% Similarity=0.541 Sum_probs=193.6
Q ss_pred eEEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC------
Q 018638 91 LIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI------ 159 (352)
Q Consensus 91 ~l~~~nls~~y~~~-----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~------ 159 (352)
+|+++||+++|++. .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++.....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999753 5999999999999999999999999999999999999999999999987652110
Q ss_pred ----------------ChhhhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-ccc
Q 018638 160 ----------------SDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVE 220 (352)
Q Consensus 160 ----------------~~~~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~ 220 (352)
......+.+||||||++ .+|. .||+|||.|+.... +.+.++..+++.++++.+||. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE-QTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccccc-ccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 00111234699999986 4554 79999999876432 355666777899999999996 789
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 018638 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (352)
Q Consensus 221 ~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivT 300 (352)
++++.+|||||||||+|||||+. +|++|||||||++||+.++..++++|++++++| .|||+||
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~-------~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tiiivt 222 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAM-------EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQG----------KTIILVT 222 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEe
Confidence 99999999999999999999997 699999999999999999999999999998766 5999999
Q ss_pred CCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 301 HQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 301 Hdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
||++.+.++||||++|++|++++.|+++++..
T Consensus 223 Hd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 223 HDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred eCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999998888654
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-53 Score=403.07 Aligned_cols=223 Identities=32% Similarity=0.515 Sum_probs=194.4
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC--hhh
Q 018638 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEE 163 (352)
Q Consensus 91 ~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--~~~ 163 (352)
||+++||+++|+. +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5899999999973 259999999999999999999999999999999999999999999999998742111 111
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 164 ~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArA 240 (352)
..+.+||||||++ .+|+ .||.||+.|+.... +.+..+..+++.++++.+||. .+.++.+.+||||||||++||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~a 158 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI 158 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHH
Confidence 1234699999987 6676 69999999876432 345566677889999999996 57899999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.++|++++++| .|||++|||++++..+||||++|++|+
T Consensus 159 L~~-------~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~til~vtHd~~~~~~~~dri~~l~~G~ 221 (288)
T PRK13643 159 LAM-------EPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG----------QTVVLVTHLMDDVADYADYVYLLEKGH 221 (288)
T ss_pred HHh-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 996 699999999999999999999999999998766 599999999999999999999999999
Q ss_pred EEEeeccccccc
Q 018638 321 IVWQGMTHEFTS 332 (352)
Q Consensus 321 iv~~g~~~~~~~ 332 (352)
+++.|+++++..
T Consensus 222 i~~~g~~~~~~~ 233 (288)
T PRK13643 222 IISCGTPSDVFQ 233 (288)
T ss_pred EEEECCHHHHHc
Confidence 999999888653
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=386.45 Aligned_cols=215 Identities=33% Similarity=0.543 Sum_probs=188.4
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccce
Q 018638 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~ 168 (352)
||+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...+.+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 58999999999 6778999999999999999999999999999999999999999999999999875432111 111336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
++|+||++.+++.+|++||+.+..... +...++..+++.++++.+++.+..++.+.+||||||||++|||||+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~----- 154 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN----- 154 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc-----
Confidence 999999999888899999998865322 23444555667889999999988999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.++..+.++|+++++++ .|+|++|||++++..+||||++|++|+++.
T Consensus 155 --~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 155 --KPAVLLADEPTGNLDDALSEGILRLFEEFNRVG----------VTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred --CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 699999999999999999999999999997665 599999999999999999999999999854
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-53 Score=384.55 Aligned_cols=208 Identities=33% Similarity=0.609 Sum_probs=185.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---~~-~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN---IE-ALRRIGA 76 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch---HH-HHhhEEE
Confidence 5789999999888999999999999999999999999999999999999999999999999876432 11 1336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+++.+||+||+.++...+. .. .+++.++++.+++.+..++++.+|||||||||+|||||+. +
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~-~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 144 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLG-IR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLG-------N 144 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcC-Cc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhc-------C
Confidence 9999999988999999988653221 11 3457889999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||++||+.++..+.++|+++++++ .|+|++|||++++..+||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQG----------ITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998765 59999999999999999999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=393.46 Aligned_cols=224 Identities=26% Similarity=0.490 Sum_probs=195.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .....+.++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP-GHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCC-HHHHHhcCe
Confidence 4799999999999889999999999999999999999999999999999999999999999999875432 222223359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcC------C--------CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENS------K--------MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~------~--------~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRv 235 (352)
+|+||++.+|+.+||+||+.++..... . ....+..+.+.++++.+|+.+..++++.+|||||||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 999999999999999999998532100 0 01112335678899999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
+|||||+. +|++|||||||+|||+.++..+.++|.+++++ | .|||++||+++++.++||+++
T Consensus 163 ~la~al~~-------~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~----------~tii~~sH~~~~~~~~~d~i~ 225 (255)
T PRK11300 163 EIARCMVT-------QPEILMLDEPAAGLNPKETKELDELIAELRNEHN----------VTVLLIEHDMKLVMGISDRIY 225 (255)
T ss_pred HHHHHHhc-------CCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcC----------CEEEEEeCCHHHHHHhCCEEE
Confidence 99999997 69999999999999999999999999999775 5 599999999999999999999
Q ss_pred EEeCCeEEEeecccccc
Q 018638 315 FLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 315 vL~~G~iv~~g~~~~~~ 331 (352)
+|++|++++.|+++++.
T Consensus 226 ~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 226 VVNQGTPLANGTPEEIR 242 (255)
T ss_pred EEECCeEEecCCHHHHh
Confidence 99999999999887765
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-54 Score=380.91 Aligned_cols=237 Identities=34% Similarity=0.536 Sum_probs=212.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC---------
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--------- 160 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--------- 160 (352)
+.|+++|+.|+||...+|++|||+-++|+++.|||.|||||||+||||+=|..|+.|+|.++|+.+.-...
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 45999999999999999999999999999999999999999999999999999999999999987632111
Q ss_pred hh--hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHH
Q 018638 161 DE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 161 ~~--~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIA 238 (352)
.+ .+.+.++|+|||+++||.+|||.||+......--+.++.+..++++.+|.++|+.+..+.+|..||||||||++||
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 01 1122359999999999999999999977543333467777888899999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+ ++|+++|+|||||+|||+..-++++.|++|+++| .|+++|||.|.+++..+.+|++|++
T Consensus 165 RaLa-------meP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg----------rTMv~VTHEM~FAR~Vss~v~fLh~ 227 (256)
T COG4598 165 RALA-------MEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG----------RTMVVVTHEMGFARDVSSHVIFLHQ 227 (256)
T ss_pred HHHh-------cCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC----------CeEEEEeeehhHHHhhhhheEEeec
Confidence 9997 5899999999999999999999999999999998 5999999999999999999999999
Q ss_pred CeEEEeecccccc-cCCcHHHHHHhc
Q 018638 319 GKIVWQGMTHEFT-SSSNPIVQQFAS 343 (352)
Q Consensus 319 G~iv~~g~~~~~~-~~~~~~~~~~~~ 343 (352)
|.|-++|+|++++ .+..+.+++|++
T Consensus 228 G~iEE~G~P~qvf~nP~S~RlkqFls 253 (256)
T COG4598 228 GKIEEEGPPEQVFGNPQSPRLKQFLS 253 (256)
T ss_pred ceecccCChHHHhcCCCCHHHHHHHH
Confidence 9999999999976 577899999987
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-53 Score=384.55 Aligned_cols=211 Identities=30% Similarity=0.562 Sum_probs=187.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|+++.... .. .+.+++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~-~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP--QK-LRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch--HH-HHhheEE
Confidence 57999999999888999999999999 99999999999999999999999999999999998765421 22 2346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+||+||+.+..... +...++..+.+.++++.+|+.+..++.+.+|||||||||+|||||+. +
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 148 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVG-------D 148 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998865332 23334456678899999999988899999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||+|||+.++..+.++|++++++ .|||++|||++++.++|||+++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGED-----------RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCC-----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999753 49999999999999999999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=407.59 Aligned_cols=227 Identities=30% Similarity=0.465 Sum_probs=196.4
Q ss_pred CCcceEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC--
Q 018638 87 DGDVLIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI-- 159 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~-- 159 (352)
.++++|+++||+++|++ +.+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++....
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 44578999999999974 35999999999999999999999999999999999999999999999998864320
Q ss_pred ------------ChhhhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCC
Q 018638 160 ------------SDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLP 224 (352)
Q Consensus 160 ------------~~~~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~ 224 (352)
......+.+||||||++ .+|+ .||+||+.|+.... +.+.++..+++.++++.+||. .+.++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 01111234699999997 5776 59999998875322 245556667788999999996 6889999
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH
Q 018638 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~ 304 (352)
.+|||||||||+|||||+. +|++|||||||+|||+.++..++++|++++++| .|||+||||++
T Consensus 175 ~~LSgGqkqRvaiAraL~~-------~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g----------~TiiivtHd~~ 237 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAI-------QPEILIFDEPTAGLDPKGEHEMMQLILDAKANN----------KTVFVITHTME 237 (320)
T ss_pred ccCCHHHHHHHHHHHHHHc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHH
Confidence 9999999999999999996 699999999999999999999999999997766 59999999999
Q ss_pred HHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 305 TIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 305 ~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
++..+||||++|++|++++.|++++++.
T Consensus 238 ~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 238 HVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999998887653
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-53 Score=385.14 Aligned_cols=232 Identities=30% Similarity=0.500 Sum_probs=203.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
+||+++||+..||..++|++|||++++||+++|+|+||||||||||+|+|+.+|.+|+|.|+|+|+.... .....+..|
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p-~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP-PHERARLGI 80 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCC-HHHHHhCCe
Confidence 5799999999999999999999999999999999999999999999999999999999999999998864 444556689
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc-CCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~-gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
+||||.-.+|+.+||+||+..+.+.... ++.....++++.+.| .|.+..+++..+|||||||.+||||||+.
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~----- 153 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS----- 153 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc--cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc-----
Confidence 9999999999999999999998754332 111122256677777 36889999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||.||-|.-..++.+.|++|++++. .||++|.++...+.+++||.+||++|+|+.+|+.+
T Consensus 154 --~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g---------~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 154 --RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG---------MTILLVEQNARFALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred --CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC---------cEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHH
Confidence 6999999999999999999999999999997742 69999999999999999999999999999999888
Q ss_pred ccccCCcHHHHHHh
Q 018638 329 EFTSSSNPIVQQFA 342 (352)
Q Consensus 329 ~~~~~~~~~~~~~~ 342 (352)
++.. ++.+.+.+
T Consensus 223 eL~~--~~~v~~~y 234 (237)
T COG0410 223 ELLA--DPDVREAY 234 (237)
T ss_pred HHhc--CHHHHHHh
Confidence 8764 33344444
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-53 Score=399.34 Aligned_cols=233 Identities=35% Similarity=0.541 Sum_probs=201.8
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--hccceEE
Q 018638 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--ISGLRIG 170 (352)
Q Consensus 93 ~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~--~~~~~ig 170 (352)
.++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........ ..+.+++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 57899999999999999999999999999999999999999999999999999999999998754321111 1233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+|+.+||+||+.++.... +....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~------- 177 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQ-GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAV------- 177 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhc-------
Confidence 9999999998899999998865322 23344455678899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..+.++|+++.++ | .|||++|||++++.++||++++|++|++++.|++++
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 247 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQ----------KTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEE 247 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 69999999999999999999999999999764 5 599999999999999999999999999999998888
Q ss_pred ccc-CCcHHHHHHhc
Q 018638 330 FTS-SSNPIVQQFAS 343 (352)
Q Consensus 330 ~~~-~~~~~~~~~~~ 343 (352)
+.. +.+++.+.++.
T Consensus 248 ~~~~~~~~~~~~~~~ 262 (269)
T cd03294 248 ILTNPANDYVREFFR 262 (269)
T ss_pred HHhCcCcHHHHHHHh
Confidence 754 44566666664
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=383.26 Aligned_cols=210 Identities=30% Similarity=0.598 Sum_probs=187.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. . .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~--~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----A--ARNRIGY 74 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----H--HHccEEE
Confidence 578999999998889999999999999999999999999999999999999999999999987531 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+++.+|++||+.+....+ +....+..+.+.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-------~ 146 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLK-GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIH-------D 146 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998764322 23334455678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||+|||+.++..+.++|+++++++ .|||++|||++++.++||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~----------~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAG----------KTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999997665 59999999999999999999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=400.29 Aligned_cols=222 Identities=32% Similarity=0.541 Sum_probs=195.0
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 90 ~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
++|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~-~ 80 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE-NVWDI-R 80 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcC-cHHHH-H
Confidence 37999999999963 4599999999999999999999999999999999999999999999999987542 22222 3
Q ss_pred ceEEEEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 167 LRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 167 ~~ig~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
.++||+||++ .+++..||+|||.|+... .+.+.++..+++.++++.+||.++.++.+.+|||||||||+|||||+.
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~-- 157 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLEN-KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM-- 157 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHh-CCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 4699999998 366678999999987532 234566667788999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..++++|++++++ | .|||++|||++.+. .||||++|++|+++..
T Consensus 158 -----~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tilivtH~~~~~~-~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 158 -----RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ----------MTVISITHDLDEVA-LSDRVLVMKNGQVEST 221 (279)
T ss_pred -----CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHH-hCCEEEEEECCEEEEE
Confidence 69999999999999999999999999999875 5 59999999999985 7999999999999999
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 222 g~~~~~~~ 229 (279)
T PRK13650 222 STPRELFS 229 (279)
T ss_pred CCHHHHHc
Confidence 98887643
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=383.37 Aligned_cols=212 Identities=36% Similarity=0.557 Sum_probs=185.8
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccceE
Q 018638 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~i 169 (352)
|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...+.++
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964 67999999999999999999999999999999999999999999999999875432111 1123369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+|+.+|++||+.++.... ....++..+++.++++.+|+++..++++.+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------ 153 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVT-GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN------ 153 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc------
Confidence 99999999999899999998875332 23344555678899999999988999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||++||+.++..+.+.|++++++| .|||++||+++++..+||++++|++|++
T Consensus 154 -~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~----------~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 154 -SPTILIADEPTGNLDPDTTWEIMNLLKKINKAG----------TTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred -CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 699999999999999999999999999997666 5999999999999999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-53 Score=405.88 Aligned_cols=212 Identities=32% Similarity=0.567 Sum_probs=189.0
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 99 ~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
|+|+++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .... +.+|||+||++.+
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~-~~~i~~~~q~~~~ 77 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE--PRKV-RRSIGIVPQYASV 77 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC--HHHH-HhhcEEecCCCCC
Confidence 478888899999999999999999999999999999999999999999999999987531 2222 3369999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEe
Q 018638 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLD 258 (352)
|+.+||+||+.+....+ +....+..+++.++++.+||.+..++++.+|||||||||+|||||++ +|++||||
T Consensus 78 ~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-------~p~lllLD 149 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLY-GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIH-------QPDVLFLD 149 (302)
T ss_pred CCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhc-------CCCEEEEe
Confidence 99999999998865332 23444556678899999999999999999999999999999999997 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 259 EPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
|||+|||+.++..++++|++++++| .|||++||+++++.++||||++|++|++++.|+++++.
T Consensus 150 EPt~gLD~~~~~~l~~~l~~~~~~g----------~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 150 EPTTGLDPRTRRAIWDYIRALKEEG----------VTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELK 212 (302)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999998766 59999999999999999999999999999999887753
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=392.48 Aligned_cols=236 Identities=29% Similarity=0.498 Sum_probs=201.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.........
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 56999999999998889999999999999999999999999999999999986 5899999999987421111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+|+|+||++.+|+ .|++||+.++.......+.++..+++.++++.+++. +..++.+.+||||||||++||||
T Consensus 92 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 170 (260)
T PRK10744 92 LRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARG 170 (260)
T ss_pred HhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 2346999999999888 799999988653222234455566788999999984 45788999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||+|||+.++..+.+.|+++++ + .|||++||+++.+..+|||+++|++|+
T Consensus 171 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~----------~tiii~sH~~~~~~~~~d~i~~l~~G~ 232 (260)
T PRK10744 171 IAI-------RPEVLLLDEPCSALDPISTGRIEELITELKQ-D----------YTVVIVTHNMQQAARCSDYTAFMYLGE 232 (260)
T ss_pred HHC-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 997 6999999999999999999999999999964 4 499999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+++.|+++++.. +.++.+.+++.+
T Consensus 233 i~~~g~~~~~~~~~~~~~~~~~~~~ 257 (260)
T PRK10744 233 LIEFGNTDTIFTKPAKKQTEDYITG 257 (260)
T ss_pred EEEeCCHHHHHhCCCcHHHHHHHhh
Confidence 999998888754 456777777654
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=390.27 Aligned_cols=236 Identities=32% Similarity=0.539 Sum_probs=200.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCC-CChhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGL-ISDEE 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~-~~~~~ 163 (352)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++... .....
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 479999999999988899999999999999999999999999999999999987 499999999987421 11112
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIA 238 (352)
.+.+++|+||++.+|+.+||.||+.++...... ...++..+++.++++.+|+. ...++.+.+|||||||||+||
T Consensus 83 -~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 83 -VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred -HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 233699999999999989999999886532211 13344556678899999984 357889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||++||+.++..+.++|+++.+ + .|||++|||++++..+||||++|++
T Consensus 162 ral~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~i~~l~~ 223 (253)
T PRK14267 162 RALAM-------KPKILLMDEPTANIDPVGTAKIEELLFELKK-E----------YTIVLVTHSPAQAARVSDYVAFLYL 223 (253)
T ss_pred HHHhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-C----------CEEEEEECCHHHHHhhCCEEEEEEC
Confidence 99997 6999999999999999999999999999865 4 4999999999999999999999999
Q ss_pred CeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 319 GKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 319 G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++++.|++.++.. +.++..+.|+.+
T Consensus 224 G~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (253)
T PRK14267 224 GKLIEVGPTRKVFENPEHELTEKYVTG 250 (253)
T ss_pred CEEEEeCCHHHHHhCCCcHHHHHHhcc
Confidence 99999998888754 335666777655
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=389.67 Aligned_cols=222 Identities=25% Similarity=0.414 Sum_probs=194.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .....+.++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQ-TAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCC-HHHHHHhCE
Confidence 4799999999999888999999999999999999999999999999999999999999999999875432 222223469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc-CCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~-gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
+|+||++.+|+.+||.||+.+.... ....+..+.+.++++.+ ++.+..++++.+||||||||++|||||+.
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~---~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~----- 154 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFF---AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMS----- 154 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhc---cChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHh-----
Confidence 9999999999989999999885421 12233445567788888 58777888999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||++|||++++.++|||+++|++|++++.|+++
T Consensus 155 --~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 222 (237)
T PRK11614 155 --QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG----------MTIFLVEQNANQALKLADRGYVLENGHVVLEDTGD 222 (237)
T ss_pred --CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHH
Confidence 699999999999999999999999999998766 59999999999999999999999999999999888
Q ss_pred cccc
Q 018638 329 EFTS 332 (352)
Q Consensus 329 ~~~~ 332 (352)
++..
T Consensus 223 ~~~~ 226 (237)
T PRK11614 223 ALLA 226 (237)
T ss_pred HHhc
Confidence 8753
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-52 Score=389.41 Aligned_cols=236 Identities=30% Similarity=0.487 Sum_probs=200.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--C---CceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--p---~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
.|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++..........
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 4899999999998889999999999999999999999999999999999986 4 6999999999874321111122
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+|+|+||++.+|+.+|++||+.++..........+..+++.++++.+++.. ..++.+.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 34699999999999989999999876533221233444566888999999853 56788999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||+|||+.++..+.+.|+++.++ .|||++||+++++.++|||+++|++|++
T Consensus 164 ~~-------~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-----------~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 164 AV-------KPEVILMDEPASALDPISTLKIEELIEELKEK-----------YTIIIVTHNMQQAARVSDYTAFFYMGDL 225 (252)
T ss_pred hc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-----------CcEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 97 69999999999999999999999999999753 4999999999999999999999999999
Q ss_pred EEeecccccc-cCCcHHHHHHhcC
Q 018638 322 VWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 322 v~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++.|+++++. .+.++.+++++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
T PRK14256 226 VECGETKKIFTTPEKKQTEDYITG 249 (252)
T ss_pred EEeCCHHHHHhCCCcHHHHHHHhh
Confidence 9999888865 4567778888765
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=384.71 Aligned_cols=218 Identities=35% Similarity=0.600 Sum_probs=184.4
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh-hhhc
Q 018638 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD-EEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~-~~~~ 165 (352)
+|+++||+++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 58899999999765 799999999999999999999999999999999999999999999999987543210 1112
Q ss_pred cceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHH-HHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISEL-VKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~-v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+++|+||++ .+++.+||++|+.+...........+..+. +.++++.+++. ...++.+.+|||||||||+|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 34699999998 567779999999876533221112222222 35789999995 688999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||++||+.++..+.+.|++++++ | .|||++|||++.+..+||++++|++|+
T Consensus 161 ~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~i~~l~~G~ 223 (228)
T cd03257 161 AL-------NPKLLIADEPTSALDVSVQAQILDLLKKLQEELG----------LTLLFITHDLGVVAKIADRVAVMYAGK 223 (228)
T ss_pred hc-------CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCeEEEEeCCE
Confidence 97 69999999999999999999999999999875 5 599999999999999999999999999
Q ss_pred EEEee
Q 018638 321 IVWQG 325 (352)
Q Consensus 321 iv~~g 325 (352)
++..|
T Consensus 224 i~~~g 228 (228)
T cd03257 224 IVEEG 228 (228)
T ss_pred EEecC
Confidence 98654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-52 Score=388.80 Aligned_cols=234 Identities=34% Similarity=0.528 Sum_probs=199.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.... ... .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~-~~~-~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD-VIE-L 80 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC-HHH-H
Confidence 59999999999988899999999999999999999999999999999999974 7999999999875432 222 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIArA 240 (352)
+.+|+|+||++.+++.+||+||+.++...... ....+..+.+.++++.+||.+ ..++.+.+|||||||||+||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 34699999999888889999999886532211 133445567889999999853 5788999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.++|+++.+ + .|+|++|||++++..+||++++|++|+
T Consensus 161 l~~-------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~i~~l~~G~ 222 (250)
T PRK14247 161 LAF-------QPEVLLADEPTANLDPENTAKIESLFLELKK-D----------MTIVLVTHFPQQAARISDYVAFLYKGQ 222 (250)
T ss_pred Hhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhcCEEEEEECCe
Confidence 997 6999999999999999999999999999864 4 599999999999999999999999999
Q ss_pred EEEeecccccccC-CcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTSS-SNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~~-~~~~~~~~~~~ 344 (352)
+++.|+++++... .++..+.|+.+
T Consensus 223 i~~~g~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14247 223 IVEWGPTREVFTNPRHELTEKYVTG 247 (250)
T ss_pred EEEECCHHHHHcCCccHHHHHHhhc
Confidence 9999988887543 34556666543
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=397.22 Aligned_cols=224 Identities=26% Similarity=0.437 Sum_probs=193.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........+.+|+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 58999999999988899999999999999999999999999999999999999999999999987421111111233699
Q ss_pred EEecCCCC-CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 171 LVFQSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 171 ~v~Q~~~l-~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+||++.+ +...|+.+|+.++.... +....+..+++.++++.+|+.++.++++.+||||||||++|||||+.
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~------ 153 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL------ 153 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc------
Confidence 99999753 33468999998864322 23444555678889999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+|||+++|++|++++.|++++
T Consensus 154 -~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (271)
T PRK13638 154 -QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG----------NHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGE 222 (271)
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 699999999999999999999999999998666 599999999999999999999999999999998877
Q ss_pred ccc
Q 018638 330 FTS 332 (352)
Q Consensus 330 ~~~ 332 (352)
+..
T Consensus 223 ~~~ 225 (271)
T PRK13638 223 VFA 225 (271)
T ss_pred Hhc
Confidence 643
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=398.53 Aligned_cols=224 Identities=29% Similarity=0.540 Sum_probs=194.8
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
++|+++||+++|+ ++.+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 5799999999996 577999999999999999999999999999999999999999999999999874211111112346
Q ss_pred EEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 169 IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 169 ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
|||+||++ .++ ..||+||+.++.... +.+..+..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 84 ig~v~q~~~~~~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~--- 158 (283)
T PRK13636 84 VGMVFQDPDNQLF-SASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM--- 158 (283)
T ss_pred EEEEecCcchhhc-cccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc---
Confidence 99999997 345 479999998865322 34455556778999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||+|||+.++..+.++|++++++ | .|||++|||++++..+|||+++|++|++++.|
T Consensus 159 ----~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tillvsH~~~~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 159 ----EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG----------LTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred ----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 69999999999999999999999999999875 5 59999999999999999999999999999999
Q ss_pred ccccccc
Q 018638 326 MTHEFTS 332 (352)
Q Consensus 326 ~~~~~~~ 332 (352)
+++++..
T Consensus 225 ~~~~~~~ 231 (283)
T PRK13636 225 NPKEVFA 231 (283)
T ss_pred CHHHHhc
Confidence 8877653
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=394.07 Aligned_cols=237 Identities=29% Similarity=0.500 Sum_probs=201.9
Q ss_pred cceEEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC
Q 018638 89 DVLIDCRNVYKSFGE---------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159 (352)
Q Consensus 89 ~~~l~~~nls~~y~~---------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~ 159 (352)
++||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~- 80 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG- 80 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC-
Confidence 357999999999962 4699999999999999999999999999999999999999999999999987532
Q ss_pred ChhhhccceEEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHH
Q 018638 160 SDEEISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 160 ~~~~~~~~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRva 236 (352)
... ..+.+|+|+||++. +++.+|+.+|+.+....+......+..+++.++++.+|+. ...++++.+|||||||||+
T Consensus 81 ~~~-~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 81 DYS-YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred chh-hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 111 12236999999974 6777899999987654332234445556788999999994 6788899999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
|||||+. +|++|||||||++||+.++..+.++|.+++++ | .|||++||+++.+..+|||+++
T Consensus 160 laral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tviivsH~~~~~~~~~d~i~~ 222 (267)
T PRK15112 160 LARALIL-------RPKVIIADEALASLDMSMRSQLINLMLELQEKQG----------ISYIYVTQHLGMMKHISDQVLV 222 (267)
T ss_pred HHHHHHh-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------cEEEEEeCCHHHHHHhcCEEEE
Confidence 9999997 69999999999999999999999999999765 5 5999999999999999999999
Q ss_pred EeCCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 316 LYEGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++|++++.|+++++.. +.+++...++.+
T Consensus 223 l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 223 MHQGEVVERGSTADVLASPLHELTKRLIAG 252 (267)
T ss_pred EECCEEEecCCHHHHhcCCCCHHHHHHHHh
Confidence 99999999998888754 345667777653
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=399.08 Aligned_cols=222 Identities=31% Similarity=0.483 Sum_probs=192.7
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC--hhh
Q 018638 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEE 163 (352)
Q Consensus 91 ~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--~~~ 163 (352)
+|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 5899999999974 469999999999999999999999999999999999999999999999998743211 111
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 164 ~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArA 240 (352)
..+.+|+|+||++ .+| .+||+||+.++.... ....++..+++.++++.+||+ ++.++++.+||||||||++||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 1233699999997 456 479999998865322 234555667789999999997 68899999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||+|||+.++..+.++|++++++| .|||++|||++.+.++|||+++|++|+
T Consensus 160 l~~-------~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~tvlivsH~~~~~~~~~d~v~~l~~G~ 222 (287)
T PRK13641 160 MAY-------EPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAG----------HTVILVTHNMDDVAEYADDVLVLEHGK 222 (287)
T ss_pred HHc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 997 699999999999999999999999999997666 599999999999999999999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (287)
T PRK13641 223 LIKHASPKEIF 233 (287)
T ss_pred EEEeCCHHHHh
Confidence 99999877654
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-52 Score=390.51 Aligned_cols=237 Identities=28% Similarity=0.462 Sum_probs=200.1
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--C---CceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--p---~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++........
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 357999999999998889999999999999999999999999999999999997 3 69999999998742111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+|+|+||++.+|+. ||+||+.+..........++..+++.++++.+++. +..++.+.+||||||||++|||
T Consensus 90 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 123469999999999885 99999988643222123344556678899999985 3568899999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||+|||+.++..+.++|+++++ + .|+|+|||+++.+.++|||+++|++|
T Consensus 169 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiivtH~~~~~~~~~d~i~~l~~G 230 (259)
T PRK14274 169 ALAT-------NPDVLLMDEPTSALDPVSTRKIEELILKLKE-K----------YTIVIVTHNMQQAARVSDQTAFFYMG 230 (259)
T ss_pred HHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-C----------CEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 9997 6999999999999999999999999999964 4 49999999999999999999999999
Q ss_pred eEEEeecccccc-cCCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++++.|+++++. .+.++.+.+++.+
T Consensus 231 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 256 (259)
T PRK14274 231 ELVECNDTNKMFSNPDDQRTLDYITG 256 (259)
T ss_pred EEEEECCHHHHhhCCCCHHHHHhhcc
Confidence 999999988875 3456777777754
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=394.59 Aligned_cols=226 Identities=28% Similarity=0.404 Sum_probs=196.4
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.+++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.
T Consensus 8 ~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~-~~ 85 (265)
T PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWS-SKAF-AR 85 (265)
T ss_pred CCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCC-HHHH-hh
Confidence 346899999999999889999999999999999999999999999999999999999999999999865322 2222 23
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
.++|+||++.+++.+|+.||+.++...... .......+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~- 164 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ- 164 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc-
Confidence 699999998888889999999875421110 1122335568899999999988999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.++..+.++|.+++++ | .|||++||+++++.++||||++|++|++++
T Consensus 165 ------~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~----------~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 165 ------DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG----------LTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred ------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 69999999999999999999999999999765 5 599999999999999999999999999999
Q ss_pred eeccccccc
Q 018638 324 QGMTHEFTS 332 (352)
Q Consensus 324 ~g~~~~~~~ 332 (352)
.|++.++..
T Consensus 229 ~~~~~~~~~ 237 (265)
T PRK10575 229 QGTPAELMR 237 (265)
T ss_pred ecCHHHhcC
Confidence 998877653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-52 Score=386.04 Aligned_cols=220 Identities=30% Similarity=0.539 Sum_probs=193.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ... ..+++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~-~~~--~~~i~ 77 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAP-RAA--LARLG 77 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCC-hhh--hhhEE
Confidence 588999999999889999999999999999999999999999999999999999999999999875421 111 22699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+++.+|++||+.+..... +....+..+.+.++++.+|+.+..++.+.+||||||||++|||||+.
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~------- 149 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALH-GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLH------- 149 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999998888899999998765322 23344455678899999999988999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..+.+.|+++++ +| .|+|++||+++++.. ||++++|++|++++.|++++
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQG----------LSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHH
Confidence 6999999999999999999999999999975 35 599999999999975 99999999999999998777
Q ss_pred ccc
Q 018638 330 FTS 332 (352)
Q Consensus 330 ~~~ 332 (352)
+..
T Consensus 219 ~~~ 221 (236)
T TIGR03864 219 LRG 221 (236)
T ss_pred HHH
Confidence 653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-52 Score=392.56 Aligned_cols=240 Identities=28% Similarity=0.466 Sum_probs=200.3
Q ss_pred CCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCC
Q 018638 86 DDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~ 160 (352)
+...++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++.....
T Consensus 16 ~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 16 EAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CCCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 344568999999999998889999999999999999999999999999999999865 799999999998753211
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHH
Q 018638 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRva 236 (352)
.....+.+++|+||++.+|+. |++||+.++.............+.+.++++.+++. +..++.+.+||||||||++
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 111123369999999999984 99999988653222112233445677889999884 4578899999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||+|||+.++..+.++|+++++ + .|||++|||++++..+|||+++|
T Consensus 175 laral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 175 IARTLAM-------KPAVLLLDEPASALDPISNAKIEELITELKE-E----------YSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred HHHHHhC-------CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C----------CEEEEEEeCHHHHHHhCCEEEEE
Confidence 9999996 6999999999999999999999999999965 3 49999999999999999999999
Q ss_pred eCCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 317 YEGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++|++++.|+++++.. +.++.+.+++.+
T Consensus 237 ~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 265 (268)
T PRK14248 237 LNGDLVEYDQTEQIFTSPKQQKTEDYING 265 (268)
T ss_pred ECCEEEEeCCHHHHHhCCCChHHHHHHhc
Confidence 9999999998888653 456777777754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=383.02 Aligned_cols=213 Identities=36% Similarity=0.627 Sum_probs=184.3
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--h
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~--~ 164 (352)
+|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........ .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4789999999964 579999999999999999999999999999999999999999999999998754321111 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
.+.+|+|+||++.+|+.+||+||+.+..... .....+..+++.++++.+|+.+..++.+.+|||||||||+|||||+.
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~- 158 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIG-KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN- 158 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC-
Confidence 1236999999999998899999998864322 22333445667899999999988999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|++|||||||++||+.++..+.++|++++++ + .|||++|||++++.. ||++++|++|+++
T Consensus 159 ------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 159 ------QPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN----------TSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred ------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 69999999999999999999999999999765 4 599999999999875 7999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-52 Score=388.41 Aligned_cols=236 Identities=28% Similarity=0.454 Sum_probs=200.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~ 164 (352)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 679999999999988899999999999999999999999999999999999875 899999999987532111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+++|+||++.+|+ +|++||+.+...........+..+++.++++.+++. +..++.+.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 161 (251)
T PRK14270 83 LRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART 161 (251)
T ss_pred HHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 2346999999999997 899999988653322112344456678899999874 45788999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||+|||+.++..+.++|+++.++ .|||+|||+++++.++|||+++|++|+
T Consensus 162 l~~-------~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~-----------~tiiivsH~~~~~~~~~d~v~~l~~G~ 223 (251)
T PRK14270 162 IAV-------KPDVILMDEPTSALDPISTLKIEDLMVELKKE-----------YTIVIVTHNMQQASRVSDYTAFFLMGD 223 (251)
T ss_pred Hhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-----------CeEEEEEcCHHHHHHhcCEEEEEECCe
Confidence 997 69999999999999999999999999998763 499999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+++.|+++++.. +.++.+.+++..
T Consensus 224 i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14270 224 LIEFNKTEKIFLEPQKKETEDYISG 248 (251)
T ss_pred EEEeCCHHHHhcCCCChHHHHhhcc
Confidence 999999988754 556778887654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=392.54 Aligned_cols=228 Identities=34% Similarity=0.495 Sum_probs=194.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~-~~~~-~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWS-PAEL-ARRRA 79 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCC-HHHh-hhheE
Confidence 689999999999888999999999999999999999999999999999999999999999999865432 2222 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+++.+||+||+.++..... ...++..+++.++++.+|+.+..++.+.+|||||||||+|||||+..+ +.-.
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~-~~~~ 157 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHG-LSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLW-EPDG 157 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccC-CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc-ccCC
Confidence 99999988778999999988642211 222334456788999999998899999999999999999999999300 0001
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~-~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+.++..+.++|+++. ++| .|||++|||++++..+||+|++|++|++++.|++++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG----------LAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 599999999999999999999999999997 455 599999999999999999999999999999998777
Q ss_pred ccc
Q 018638 330 FTS 332 (352)
Q Consensus 330 ~~~ 332 (352)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=388.70 Aligned_cols=229 Identities=34% Similarity=0.522 Sum_probs=198.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.+++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-~~~~-~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID-VIDL-RRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC-hHHh-hhcEE
Confidence 589999999998888999999999999999999999999999999999999999999999999875432 2222 33699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+||++.+|+ .||+||+.+..... . . ..+++.++++.+++. ++.++.+.+||||||||++|||||+.
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~-~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~------ 148 (241)
T PRK14250 81 MVFQQPHLFE-GTVKDNIEYGPMLK-G--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN------ 148 (241)
T ss_pred EEecCchhch-hhHHHHHhcchhhc-C--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc------
Confidence 9999999887 69999998754221 1 1 134577899999996 67899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||++||+.++..+.+.|++++++ | .|||++|||++++..+||||++|++|++++.|++.
T Consensus 149 -~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 149 -NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN----------LTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTY 217 (241)
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 69999999999999999999999999999764 5 59999999999999999999999999999999888
Q ss_pred cccc-CCcHHHHHHhcC
Q 018638 329 EFTS-SSNPIVQQFASG 344 (352)
Q Consensus 329 ~~~~-~~~~~~~~~~~~ 344 (352)
++.. +.+++...|+.+
T Consensus 218 ~~~~~~~~~~~~~~~~~ 234 (241)
T PRK14250 218 DFFTNPQNEVTKLFIQG 234 (241)
T ss_pred HHhcCCCcHHHHHHHhc
Confidence 8754 445676776654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-52 Score=390.26 Aligned_cols=238 Identities=32% Similarity=0.515 Sum_probs=200.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe-----CCCCCChhh-
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-----RAGLISDEE- 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~-----~~~~~~~~~- 163 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++ +........
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 47999999999988889999999999999999999999999999999999999999999999987 543211111
Q ss_pred -hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 164 -ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 -~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+..++|+||++ .+++.+|+++|+.+.+.........+..+.+.++++.+++. ...++.+.+|||||||||+|||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 1133599999997 46777899999987543222122334556788999999997 4789999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
||+. +|++|||||||++||+.++..+.+.|+++.++ | .|||++|||++++..+||+|++|++
T Consensus 165 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~isH~~~~~~~~~d~i~~l~~ 227 (258)
T PRK11701 165 NLVT-------HPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG----------LAVVIVTHDLAVARLLAHRLLVMKQ 227 (258)
T ss_pred HHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9997 69999999999999999999999999998765 5 5999999999999999999999999
Q ss_pred CeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 319 GKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 319 G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
|++++.|+++++. .+.+++.+.++..
T Consensus 228 g~i~~~~~~~~~~~~~~~~~~~~~~~~ 254 (258)
T PRK11701 228 GRVVESGLTDQVLDDPQHPYTQLLVSS 254 (258)
T ss_pred CEEEEeCCHHHHhcCCCCHHHHHHHHh
Confidence 9999999888875 3445666666643
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=398.65 Aligned_cols=223 Identities=29% Similarity=0.478 Sum_probs=193.7
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hh
Q 018638 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EE 163 (352)
Q Consensus 91 ~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~ 163 (352)
.|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999963 3699999999999999999999999999999999999999999999999987532111 11
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 164 ~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArA 240 (352)
..+.+||||||++ .+|+ .||+||+.|+... .+.+.++..+++.++++.+||. +..++.+.+|||||||||+||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lara 159 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKN-FKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI 159 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1234699999997 5666 5999999987533 2345556677889999999997 68899999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
|+. +|++|||||||+|||+.++..+.++|++++++ | .|||+||||++++.++||||++|++|
T Consensus 160 L~~-------~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvl~vtH~~~~~~~~~dri~~l~~G 222 (286)
T PRK13646 160 LAM-------NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN----------KTIILVSHDMNEVARYADEVIVMKEG 222 (286)
T ss_pred HHh-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEEEEEECC
Confidence 997 69999999999999999999999999999764 5 59999999999999999999999999
Q ss_pred eEEEeeccccccc
Q 018638 320 KIVWQGMTHEFTS 332 (352)
Q Consensus 320 ~iv~~g~~~~~~~ 332 (352)
++++.|+++++..
T Consensus 223 ~i~~~g~~~~~~~ 235 (286)
T PRK13646 223 SIVSQTSPKELFK 235 (286)
T ss_pred EEEEECCHHHHHh
Confidence 9999998877543
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-53 Score=382.65 Aligned_cols=203 Identities=32% Similarity=0.521 Sum_probs=178.2
Q ss_pred EEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 93 DCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 93 ~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .. .+.+|+|
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----~~-~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA----KE-RRKSIGY 75 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh----HH-hhcceEE
Confidence 47899999987 789999999999999999999999999999999999999999999999998632 11 2336999
Q ss_pred EecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 172 VFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 172 v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
+||++. .+..+|++||+.++..... . ..+++.++++.+|+.++.++++.+||||||||++|||||+.
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 143 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELD---A--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLS------- 143 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcC---c--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHh-------
Confidence 999974 2335799999988643211 1 12457889999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|++|||||||++||+.++..+.++|++++++| .|||++|||++++..+||++++|++|+++
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQG----------KAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 699999999999999999999999999997766 59999999999999999999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-52 Score=382.57 Aligned_cols=216 Identities=35% Similarity=0.530 Sum_probs=187.4
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--h
Q 018638 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--E 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~ 163 (352)
++|+++||+++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 57999999999975 35999999999999999999999999999999999999999999999999875432211 1
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
..+.+++|+||++.+++.+|++||+.+..... .....+..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLR-GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 12236999999999999899999998764322 23344456678899999999988999999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|++|||||||+|||+.++..+.++|++++++ | .|||++|||++++.. ||++++|++|+++
T Consensus 164 -------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 164 -------RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG----------TTLILVTHDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHh-CCEEEEEECCEEE
Confidence 69999999999999999999999999999765 5 599999999999865 9999999999997
Q ss_pred Ee
Q 018638 323 WQ 324 (352)
Q Consensus 323 ~~ 324 (352)
+.
T Consensus 226 ~~ 227 (228)
T PRK10584 226 EE 227 (228)
T ss_pred ec
Confidence 53
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-52 Score=387.16 Aligned_cols=236 Identities=33% Similarity=0.513 Sum_probs=198.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC---CCC--CceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL---LAP--DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl---~~p--~~G~I~i~G~~~~~~~~~~~~ 164 (352)
++|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|+++.........
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 579999999999988899999999999999999999999999999999997 455 589999999987532111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+|+|+||++.+|+ .|++||+.++.........+...+.+.++++.+|+.+ ..++.+.+||||||||++||||
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 2336999999999887 6999999886532211123344566788999999853 5688899999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||+|||+.++..+.++|+++. ++ .|||+||||++++.++|||+++|++|+
T Consensus 161 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~----------~tiiivtH~~~~~~~~~d~v~~l~~G~ 222 (250)
T PRK14245 161 MAV-------SPSVLLMDEPASALDPISTAKVEELIHELK-KD----------YTIVIVTHNMQQAARVSDKTAFFYMGE 222 (250)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cC----------CeEEEEeCCHHHHHhhCCEEEEEECCE
Confidence 997 699999999999999999999999999995 44 499999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+++.|+++++.. +.++.+++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14245 223 MVEYDDTKKIFTNPEKEATQNYITG 247 (250)
T ss_pred EEEECCHHHHhcCCCChHHHHhhcc
Confidence 999999888753 456677776654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-52 Score=389.28 Aligned_cols=236 Identities=32% Similarity=0.503 Sum_probs=199.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++..........
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 69999999999988899999999999999999999999999999999999974 7999999999864211111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+..++|+||++.+|+.+||+||+.++.........++..+++.++++.+|+. +..++.+.+|||||||||+|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3469999999999998999999988653222123445566788899999984 467889999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe----
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY---- 317 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~---- 317 (352)
+. +|++|||||||+|||+.++..+.++|+++++ + .|||++||+++++.++||||++|+
T Consensus 164 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tviivsH~~~~~~~~~d~i~~l~~~~~ 225 (258)
T PRK14241 164 AV-------EPDVLLMDEPCSALDPISTLAIEDLINELKQ-D----------YTIVIVTHNMQQAARVSDQTAFFNLEAT 225 (258)
T ss_pred hc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEecCHHHHHHhCCEEEEEecccC
Confidence 97 6999999999999999999999999999954 4 499999999999999999999997
Q ss_pred --CCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 318 --EGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 318 --~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+|+|++.|+++++.. +.++.+.+++.+
T Consensus 226 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK14241 226 GKPGRLVEIDDTEKIFSNPTQKATEDYISG 255 (258)
T ss_pred CCCceEEecCCHHHHHhCcCcHHHHHHHhh
Confidence 899999998888753 345666776654
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-52 Score=390.03 Aligned_cols=212 Identities=30% Similarity=0.537 Sum_probs=189.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..+++
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-------~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-------GAERG 73 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-------CCcEE
Confidence 58999999999988899999999999999999999999999999999999999999999999986421 12589
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+++.+||+||+.++.... +....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~------- 145 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAA------- 145 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999998899999998864322 23344455678899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe--CCeEEEeecc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY--EGKIVWQGMT 327 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~--~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..+.++|+++++ +| .|||+||||++++..+||+|++|+ +|++++.++.
T Consensus 146 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETG----------KQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 6999999999999999999999999999865 35 599999999999999999999998 5999998754
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-52 Score=390.40 Aligned_cols=231 Identities=28% Similarity=0.426 Sum_probs=198.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..... +..++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~-~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML-SSRQL-ARRLA 79 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHC-CHHHH-hhheE
Confidence 69999999999988999999999999999999999999999999999999999999999999976432 12222 23599
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
|+||++.+++.+|++||+.++.... .........+++.++++.+|+.++.++++.+|||||||||+|||||+.
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~---- 155 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ---- 155 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc----
Confidence 9999999888889999998753111 111123345567889999999989999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..+.++|+++.++| .|||++||+++++.++||++++|++|+++..|++
T Consensus 156 ---~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~----------~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 222 (255)
T PRK11231 156 ---DTPVVLLDEPTTYLDINHQVELMRLMRELNTQG----------KTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTP 222 (255)
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCH
Confidence 699999999999999999999999999997665 5999999999999999999999999999999988
Q ss_pred cccccCCcHHHHHHh
Q 018638 328 HEFTSSSNPIVQQFA 342 (352)
Q Consensus 328 ~~~~~~~~~~~~~~~ 342 (352)
+++.. .+.+.+++
T Consensus 223 ~~~~~--~~~~~~~~ 235 (255)
T PRK11231 223 EEVMT--PGLLRTVF 235 (255)
T ss_pred HHhcC--HHHHHHHh
Confidence 77653 23445554
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-52 Score=394.95 Aligned_cols=222 Identities=35% Similarity=0.537 Sum_probs=193.2
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
||+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++......... +.+|
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~-~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI-RKLV 79 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH-Hhhe
Confidence 589999999995 56799999999999999999999999999999999999999999999999987543211222 3369
Q ss_pred EEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 170 GLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 170 g~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||+||++. .+...|++||+.+..... +.+..+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~----- 153 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM----- 153 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc-----
Confidence 99999985 355589999998865322 24555566778899999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||+|||+.++..++++|++++++| .|||++|||++.+. .||||++|++|++++.|+++
T Consensus 154 --~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 220 (274)
T PRK13644 154 --EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG----------KTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPE 220 (274)
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHH
Confidence 699999999999999999999999999998766 59999999999985 59999999999999999887
Q ss_pred cccc
Q 018638 329 EFTS 332 (352)
Q Consensus 329 ~~~~ 332 (352)
++..
T Consensus 221 ~~~~ 224 (274)
T PRK13644 221 NVLS 224 (274)
T ss_pred HHhc
Confidence 7643
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=413.63 Aligned_cols=232 Identities=31% Similarity=0.493 Sum_probs=200.9
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE----eCCCCCChh--hhccce
Q 018638 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR----KRAGLISDE--EISGLR 168 (352)
Q Consensus 95 ~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~----~~~~~~~~~--~~~~~~ 168 (352)
.++.++||...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+|+|+ ++....... ..++.+
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 35677888888999999999999999999999999999999999999999999999997 333221111 122346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|+||||++.+|+.+||+||+.+++.. .+.++.+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~-~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~----- 181 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEM-QGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAM----- 181 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 99999999999999999999988643 234555566778999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|+||||||||++||+.++..+++.|.+++++ + .|||+||||++++.++||||++|++|++++.|++
T Consensus 182 --~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~----------~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~ 249 (382)
T TIGR03415 182 --DADILLMDEPFSALDPLIRTQLQDELLELQAKLN----------KTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTP 249 (382)
T ss_pred --CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 69999999999999999999999999999775 5 5999999999999999999999999999999999
Q ss_pred ccccc-CCcHHHHHHhcC
Q 018638 328 HEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 328 ~~~~~-~~~~~~~~~~~~ 344 (352)
+++.. +.+.+++.|+.+
T Consensus 250 ~ei~~~p~~~~~~~~~~~ 267 (382)
T TIGR03415 250 EEIVLNPANDYVADFVAH 267 (382)
T ss_pred HHHhhCcchHHHHHHhcc
Confidence 88764 456678877653
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=390.02 Aligned_cols=237 Identities=31% Similarity=0.476 Sum_probs=199.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~ 163 (352)
+.+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++........
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 4579999999999988899999999999999999999999999999999999975 89999999998743111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIA 238 (352)
..+.+|+|+||++.+|+ .||+||+.++...+.. ....+..+++.++++.+|+.+ ..++.+.+|||||||||+||
T Consensus 97 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 97 ELRARVGMVFQKPNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HHhhceEEEecCCCCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 12346999999999988 4999999886532211 123344566888999999953 56788999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++.+..+||++++|++
T Consensus 176 ral~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~----------~tiiivtH~~~~~~~~~d~v~~l~~ 237 (267)
T PRK14235 176 RAIAV-------SPEVILMDEPCSALDPIATAKVEELIDELRQ-N----------YTIVIVTHSMQQAARVSQRTAFFHL 237 (267)
T ss_pred HHHHc-------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-C----------CeEEEEEcCHHHHHhhCCEEEEEEC
Confidence 99997 6999999999999999999999999999865 4 4999999999999999999999999
Q ss_pred CeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 319 GKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 319 G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++++.|+++++.. +.++.+++++.+
T Consensus 238 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (267)
T PRK14235 238 GNLVEVGDTEKMFTNPDDPRTQDYITG 264 (267)
T ss_pred CEEEEeCCHHHHHhCCCCHHHHHHhhc
Confidence 99999998888753 445666776654
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-52 Score=393.99 Aligned_cols=223 Identities=35% Similarity=0.613 Sum_probs=193.2
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
||+++||+++|+ .+.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 589999999996 4679999999999999999999999999999999999999999999999998742111111123469
Q ss_pred EEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 170 GLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 170 g~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|+||++ .+++ .||.||+.++.... +...++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~-~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~---- 154 (275)
T PRK13639 81 GIVFQNPDDQLFA-PTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM---- 154 (275)
T ss_pred EEEeeChhhhhcc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhc----
Confidence 9999997 3454 79999998764322 23444556678899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..++++|++++++| .|||++|||++++.++|||+++|++|++++.|++
T Consensus 155 ---~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~----------~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 221 (275)
T PRK13639 155 ---KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG----------ITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221 (275)
T ss_pred ---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 699999999999999999999999999998765 5999999999999999999999999999999988
Q ss_pred ccccc
Q 018638 328 HEFTS 332 (352)
Q Consensus 328 ~~~~~ 332 (352)
+++..
T Consensus 222 ~~~~~ 226 (275)
T PRK13639 222 KEVFS 226 (275)
T ss_pred HHHhc
Confidence 87653
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-52 Score=385.23 Aligned_cols=222 Identities=27% Similarity=0.408 Sum_probs=190.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++.... .....+.++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE-PDERARAGL 79 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCC-HHHhhccce
Confidence 57899999999888999999999999999999999999999999999995 799999999999875432 222223359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCC------CCHHHHHHHHHHHHHHcCCC-cccccCCC-CCChHHHHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSK------MRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALARSI 241 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~------~~~~~~~~~v~~~l~~~gL~-~~~~~~~~-~LSGGqrQRvaIArAL 241 (352)
+|+||++.+++.+|++||+.+....... ....+..+++.++++.+|+. ...++.+. +|||||||||+|||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 9999999999999999999876432111 12234456788999999997 56788887 5999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh-cCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~-aDrv~vL~~G~ 320 (352)
+. +|++|||||||++||+.++..+.++|++++++| .|||+||||++.+..+ ||++++|++|+
T Consensus 160 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tvi~vsH~~~~~~~~~~d~i~~l~~G~ 222 (243)
T TIGR01978 160 LL-------EPKLAILDEIDSGLDIDALKIVAEGINRLREPD----------RSFLIITHYQRLLNYIKPDYVHVLLDGR 222 (243)
T ss_pred hc-------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC----------cEEEEEEecHHHHHhhcCCeEEEEeCCE
Confidence 97 699999999999999999999999999997765 5999999999999998 89999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (243)
T TIGR01978 223 IVKSGDVELAK 233 (243)
T ss_pred EEEecCHHHhc
Confidence 99999776543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-52 Score=379.44 Aligned_cols=208 Identities=40% Similarity=0.676 Sum_probs=181.0
Q ss_pred EEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 93 DCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 93 ~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ... .+.+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i~ 78 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS-LKE-LRRKVG 78 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCC-HHH-HHhhce
Confidence 47899999987 78999999999999999999999999999999999999999999999999875421 122 233699
Q ss_pred EEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 171 LVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 171 ~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+||++. .++.+|++||+.+..... .....+..+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~------ 151 (211)
T cd03225 79 LVFQNPDDQFFGPTVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAM------ 151 (211)
T ss_pred EEecChhhhcCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc------
Confidence 9999985 355689999998764322 23334445668889999999988999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+|++|||||||+|||+.++..+.+.|++++++| .|||++|||++++..+||+|++|++|+
T Consensus 152 -~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~----------~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 152 -DPDILLLDEPTAGLDPAGRRELLELLKKLKAEG----------KTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 699999999999999999999999999998766 599999999999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=385.52 Aligned_cols=235 Identities=26% Similarity=0.411 Sum_probs=196.9
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CC---CceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--AP---DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p---~~G~I~i~G~~~~~~~~~~~~ 164 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|+++|+++.........
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 4799999999999888999999999999999999999999999999999995 46 599999999987432111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+++|+||++.+|+ +||+||+.++.............+++.++++.+++. +..++.+.+|||||||||+||||
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 2336999999999987 799999988653222112333456678889999874 45688999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++..+|||+++|++|+
T Consensus 163 l~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14239 163 LAT-------SPKIILLDEPTSALDPISAGKIEETLLGLKD-D----------YTMLLVTRSMQQASRISDRTGFFLDGD 224 (252)
T ss_pred Hhc-------CCCEEEEcCCccccCHHHHHHHHHHHHHHhh-C----------CeEEEEECCHHHHHHhCCEEEEEECCE
Confidence 997 6999999999999999999999999999865 3 499999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhc
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
+++.|+++++.. +.++.+.+++.
T Consensus 225 i~~~g~~~~~~~~~~~~~~~~~~~ 248 (252)
T PRK14239 225 LIEYNDTKQMFMNPKHKETEDYIS 248 (252)
T ss_pred EEEeCCHHHHHhCCCCHHHHHHHh
Confidence 999998888754 44566666654
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-52 Score=383.33 Aligned_cols=217 Identities=31% Similarity=0.498 Sum_probs=189.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPP-HERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH-HHHHHhCeEE
Confidence 578999999998899999999999999999999999999999999999999999999999998754322 2212336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-CCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g-L~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
+||++.+|+.+|+.||+.++..... .. ..+.+.++++.++ +....++++.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------- 148 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALP-RR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT------- 148 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcC-cc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999998999999988653221 11 1233567788886 5778899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..+.++|.+++++ + .|||++||+++++..+||++++|++|++++.|++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGG----------MAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCC----------cEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 69999999999999999999999999999874 4 599999999999999999999999999999998777
Q ss_pred c
Q 018638 330 F 330 (352)
Q Consensus 330 ~ 330 (352)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=392.80 Aligned_cols=221 Identities=35% Similarity=0.588 Sum_probs=194.0
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.+|+++||+++|+ ++.+|+||||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|+++... ..... +.+
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~-~~~ 79 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE-NIREV-RKF 79 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC-CHHHH-Hhh
Confidence 3699999999996 45699999999999999999999999999999999999999999999999987532 12222 336
Q ss_pred EEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 169 IGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 169 ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
++|+||++. ++ ..||.||+.++... .....++..+++.++++.+||.+..++.+.+||||||||++|||||+.
T Consensus 80 i~~v~q~~~~~~~-~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~--- 154 (277)
T PRK13652 80 VGLVFQNPDDQIF-SPTVEQDIAFGPIN-LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM--- 154 (277)
T ss_pred eEEEecCcccccc-cccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc---
Confidence 999999973 45 57999999876532 234555566778999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||+|||+.++..+.++|++++++ | .|||++||+++++.++|||+++|++|++++.|
T Consensus 155 ----~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 155 ----EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG----------MTVIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred ----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEEECCeEEEEC
Confidence 69999999999999999999999999999875 5 59999999999999999999999999999999
Q ss_pred cccccc
Q 018638 326 MTHEFT 331 (352)
Q Consensus 326 ~~~~~~ 331 (352)
+++++.
T Consensus 221 ~~~~~~ 226 (277)
T PRK13652 221 TVEEIF 226 (277)
T ss_pred CHHHHh
Confidence 887764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=384.60 Aligned_cols=233 Identities=28% Similarity=0.460 Sum_probs=198.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC---CCceEEEECCEeCCCCCChhhhccc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~---p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+++++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.... ... .+.
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~-~~~-~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD-VVA-LRK 79 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC-HHH-Hhh
Confidence 5899999999998889999999999999999999999999999999999984 79999999999875432 112 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCC-CHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHHHh
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+|+|+||++.+|+ .|++||+.++....... ......+++.++++.+++. +..++.+.+|||||||||+|||||+
T Consensus 80 ~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 80 NVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred hEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 6999999999997 69999998864322111 2234455678899999995 4568889999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||++||+.++..+.+.|+++.+ + .|+|+|||+++++.++|||+++|++|+++
T Consensus 159 ~-------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 159 I-------KPKLLLLDEPTSALDPISSGVIEELLKELSH-N----------LSMIMVTHNMQQGKRVADYTAFFHLGELI 220 (246)
T ss_pred c-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-C----------CEEEEEecCHHHHHhhCcEEEEEECCEEE
Confidence 7 6999999999999999999999999999864 5 59999999999999999999999999999
Q ss_pred Eeeccccccc-CCcHHHHHHhcC
Q 018638 323 WQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 323 ~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+.|++.++.. +.++.+++|+.+
T Consensus 221 ~~g~~~~~~~~~~~~~~~~~~~~ 243 (246)
T PRK14269 221 EFGESKEFFENPKQEKTKAYLSG 243 (246)
T ss_pred EECCHHHHHhCCCcHHHHHHhhh
Confidence 9998888754 345667777654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=384.12 Aligned_cols=235 Identities=29% Similarity=0.493 Sum_probs=198.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++..........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 48999999999988899999999999999999999999999999999999863 7999999999875311111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+|+|+||++.+|+ +|++||+.+..........++..+++.++++.+++. +..++++.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 346999999999888 899999988653222122344566788889999874 456889999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||++||+.++..+.++|+++.+ + .|||++||+++.+..+|||+++|++|++
T Consensus 162 ~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~v~~l~~G~i 223 (250)
T PRK14240 162 AV-------EPEVLLMDEPTSALDPISTLKIEELIQELKK-D----------YTIVIVTHNMQQASRISDKTAFFLNGEI 223 (250)
T ss_pred hc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEEeCHHHHHhhCCEEEEEECCEE
Confidence 97 6999999999999999999999999999854 4 5999999999999999999999999999
Q ss_pred EEeecccccc-cCCcHHHHHHhcC
Q 018638 322 VWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 322 v~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++.|+++++. .+.++.+.+++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14240 224 VEFGDTVDLFTNPKDKRTEDYITG 247 (250)
T ss_pred EEeCCHHHHHhCCCChHHHHhhcc
Confidence 9999888865 3456777777654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=393.76 Aligned_cols=221 Identities=31% Similarity=0.535 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
++|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~-~~~~~-~~ 81 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE-TVWDV-RR 81 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC-cHHHH-hh
Confidence 57999999999974 5699999999999999999999999999999999999999999999999987543 22222 34
Q ss_pred eEEEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 168 RIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 168 ~ig~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
+|||+||++. +++..||.||+.++.... +...++..+++.++++.+||+++.++++.+|||||||||+|||||+.
T Consensus 82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~--- 157 (279)
T PRK13635 82 QVGMVFQNPDNQFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLAL--- 157 (279)
T ss_pred heEEEEeCHHHhcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc---
Confidence 6999999983 566689999998865332 23455556778999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||+|||+.++..++++|++++++ | .|||++|||++.+.. |||+++|++|++++.|
T Consensus 158 ----~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~----------~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 158 ----QPDIIILDEATSMLDPRGRREVLETVRQLKEQKG----------ITVLSITHDLDEAAQ-ADRVIVMNKGEILEEG 222 (279)
T ss_pred ----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC----------CEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 69999999999999999999999999999875 5 599999999999975 9999999999999999
Q ss_pred cccccc
Q 018638 326 MTHEFT 331 (352)
Q Consensus 326 ~~~~~~ 331 (352)
+++++.
T Consensus 223 ~~~~~~ 228 (279)
T PRK13635 223 TPEEIF 228 (279)
T ss_pred CHHHHh
Confidence 877654
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=388.76 Aligned_cols=234 Identities=31% Similarity=0.504 Sum_probs=197.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCEeCCCCC---Chhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLI---SDEE 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~~~~~~~---~~~~ 163 (352)
++|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|+|+|+|+++.... ....
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 5799999999999889999999999999999999999999999999999999987 499999999864321 0111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcC-------CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENS-------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~-------~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRva 236 (352)
..+.+++|+||++.+|+.+||+||+.++..... ....++..+++.++++.+|+.+..++.+.+|||||||||+
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 123369999999999998999999987542100 0112334567889999999998899999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
|||||+. +|++|||||||+|||+.++..+.++|+++.++ | .|||++|||++++..+|||+++
T Consensus 163 laral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 163 IARALMQ-------QAKVILADEPIASLDPESARIVMDTLRDINQNDG----------ITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred HHHHHhc-------CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEE
Confidence 9999996 69999999999999999999999999999764 5 5999999999999999999999
Q ss_pred EeCCeEEEeecccccccCCcHHHHHHhc
Q 018638 316 LYEGKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
|++|++++.|++.++. .+.+.+++.
T Consensus 226 l~~g~i~~~g~~~~~~---~~~~~~~~~ 250 (262)
T PRK09984 226 LRQGHVFYDGSSQQFD---NERFDHLYR 250 (262)
T ss_pred EECCEEEEeCCHHHhc---cHHHHHHHh
Confidence 9999999999887762 234444443
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=388.53 Aligned_cols=238 Identities=29% Similarity=0.453 Sum_probs=204.4
Q ss_pred eEEEEeEEEEeC---------CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 91 LIDCRNVYKSFG---------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 91 ~l~~~nls~~y~---------~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
+|+++||+++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++......
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 699999999997 47899999999999999999999999999999999999999999999999987543211
Q ss_pred h-hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHH
Q 018638 162 E-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 162 ~-~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaI 237 (352)
. ...+.+++|+||++ .+++..|+.+|+.+...........+..+++.++++.+|+. ...++.+.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 1 11233699999997 46677899999977543222233444455788999999997 58899999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
||||+. +|++|||||||++||+.++..+.++|++++++ + .|+|++||+++.+..+||++++|
T Consensus 163 aral~~-------~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~----------~tiiivsH~~~~i~~~~d~i~~l 225 (268)
T PRK10419 163 ARALAV-------EPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG----------TACLFITHDLRLVERFCQRVMVM 225 (268)
T ss_pred HHHHhc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcC----------cEEEEEECCHHHHHHhCCEEEEE
Confidence 999997 69999999999999999999999999999765 4 59999999999999999999999
Q ss_pred eCCeEEEeecccccccCCcHHHHHHhcCC
Q 018638 317 YEGKIVWQGMTHEFTSSSNPIVQQFASGS 345 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~~~~~~~~~~~~~~ 345 (352)
++|++++.|+++++....++++..++...
T Consensus 226 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 254 (268)
T PRK10419 226 DNGQIVETQPVGDKLTFSSPAGRVLQNAV 254 (268)
T ss_pred ECCEEeeeCChhhccCCCCHHHHHHHHhc
Confidence 99999999999888777788888777543
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-52 Score=406.69 Aligned_cols=225 Identities=29% Similarity=0.449 Sum_probs=193.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~~~~~~ 168 (352)
||++ ||+|+|+++. + |+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...... ....+++
T Consensus 1 ~l~~-~l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 5888 9999998764 3 89999999999999999999999999999999999999999999986431100 0111336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|+|+||++.+|+.+||+||+.++.. ....+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~----- 145 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT----- 145 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc-----
Confidence 9999999999999999999988642 1123567889999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+.++..+++.|+++.++ | .|+|+||||++++..+|||+++|++|++++.|++
T Consensus 146 --~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 146 --APELLLMDEPLASLDLPRKRELLPYLERLAREIN----------IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred --CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCH
Confidence 69999999999999999999999999999875 5 5999999999999999999999999999999999
Q ss_pred cccccC-CcHHHHHHh
Q 018638 328 HEFTSS-SNPIVQQFA 342 (352)
Q Consensus 328 ~~~~~~-~~~~~~~~~ 342 (352)
+++... .+..+..|+
T Consensus 214 ~~i~~~p~~~~~~~~~ 229 (352)
T PRK11144 214 EEVWASSAMRPWLPKE 229 (352)
T ss_pred HHHHhCcchhhhhccc
Confidence 887643 334444443
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=376.63 Aligned_cols=210 Identities=39% Similarity=0.625 Sum_probs=183.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|+++. .++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... . .+.+++|
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~---~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-P---ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-H---hHccEEE
Confidence 47899999998764 3999999999999999999999999999999999999999999999875431 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+|++||+.++....... .++..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~-------~ 146 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVR-------D 146 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998764311111 22345568899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||++||+.++..++++|++++++ + .|||++|||++++..+|||+++|++|++++.|
T Consensus 147 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETK----------MTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999764 5 59999999999999999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=389.52 Aligned_cols=209 Identities=36% Similarity=0.541 Sum_probs=187.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+.+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-------~~~~ 82 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE-------ARED 82 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH-------hhCc
Confidence 356999999999998889999999999999999999999999999999999999999999999986421 1236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
++|+||++.+|+.+||+||+.++.. . ...+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~-----~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~----- 150 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK-----G--QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIH----- 150 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc-----c--hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 9999999999988999999987531 1 123457889999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..+.++|+++.++ + .|||+||||++++..+||+|++|++|+++.+++.
T Consensus 151 --~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~----------~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 151 --RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG----------FTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred --CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 69999999999999999999999999998654 4 5999999999999999999999999999998865
Q ss_pred c
Q 018638 328 H 328 (352)
Q Consensus 328 ~ 328 (352)
+
T Consensus 219 ~ 219 (257)
T PRK11247 219 D 219 (257)
T ss_pred c
Confidence 4
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=383.45 Aligned_cols=236 Identities=30% Similarity=0.500 Sum_probs=197.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 46999999999998899999999999999999999999999999999999997 4899999999986431111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+..++|++|++.+|+ .||+||+.++.........+...+++.++++.+++. ...++.+.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 83 LRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence 2336999999999887 799999987643222122333456678899999984 45688999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.+.|+++.+ + .|||+|||+++++.++||||++|++|+
T Consensus 162 l~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiiiisH~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14251 162 LAV-------RPKVVLLDEPTSALDPISSSEIEETLMELKH-Q----------YTFIMVTHNLQQAGRISDQTAFLMNGD 223 (251)
T ss_pred Hhc-------CCCEEEecCCCccCCHHHHHHHHHHHHHHHc-C----------CeEEEEECCHHHHHhhcCEEEEEECCE
Confidence 997 6999999999999999999999999999854 3 499999999999999999999999999
Q ss_pred EEEeecccccc-cCCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+++.|+++++. .+.+...+.++..
T Consensus 224 i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14251 224 LIEAGPTEEMFIAPKKQITSDYLNG 248 (251)
T ss_pred EEEeCCHHHHHhCCCCHHHHHHHhh
Confidence 99999888865 3456666666653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=383.24 Aligned_cols=236 Identities=28% Similarity=0.430 Sum_probs=199.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-----ceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-----~G~I~i~G~~~~~~~~~~~~ 164 (352)
++|+++||+++|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 5799999999999888999999999999999999999999999999999999997 69999999986431111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+++|+||++.+|+. |++||+.+..........+...+.+.++++.+++. +..++.+.+|||||||||+||||
T Consensus 83 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred hhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 23469999999999984 99999998653221112233445677788888874 45788999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.++|+++. ++ .|||++||+++++.++||++++|++|+
T Consensus 162 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~----------~tilivsh~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14249 162 LAI-------EPEVILMDEPCSALDPVSTMRIEELMQELK-QN----------YTIAIVTHNMQQAARASDWTGFLLTGD 223 (251)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cC----------CEEEEEeCCHHHHHhhCCEEEEEeCCe
Confidence 997 699999999999999999999999999985 44 599999999999999999999999999
Q ss_pred EEEeecccccc-cCCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+++.|+++++. .+.++.+.+++.+
T Consensus 224 i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14249 224 LVEYGRTGEIFSRPRDKRTEDYITG 248 (251)
T ss_pred EEEeCCHHHHHhCCCChHHHHHHhc
Confidence 99999888865 3556777777765
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-51 Score=382.90 Aligned_cols=237 Identities=29% Similarity=0.498 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-----ceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-----~G~I~i~G~~~~~~~~~~~~ 164 (352)
.+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|+++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 4799999999999889999999999999999999999999999999999999874 89999999987531111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+|+|+||++.+|+.+|+.||+.+..........++..+.+.++++.+++. +..++++.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 23469999999999998999999987653222112334455667777777753 45688899999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.+.|+++++ + .|||++||+++.+..+|||+++|++|+
T Consensus 163 l~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14272 163 LAV-------EPEILLMDEPTSALDPASTARIEDLMTDLKK-V----------TTIIIVTHNMHQAARVSDTTSFFLVGD 224 (252)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 997 6999999999999999999999999999864 4 499999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+++.|+++++.. +.++....++.+
T Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
T PRK14272 225 LVEHGPTDQLFTNPRDERTEAYVSG 249 (252)
T ss_pred EEEeCCHHHHHhCcCcHHHHHHHhc
Confidence 999998888753 445667777755
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=389.98 Aligned_cols=225 Identities=29% Similarity=0.442 Sum_probs=195.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
..+|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.+
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~ 82 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYA-SKEV-ARR 82 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCC-HHHH-hhh
Confidence 35799999999999888999999999999999999999999999999999999999999999999875422 2222 236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
|+|+||++.+++.+|++||+.++...... ...+...+++.++++.+||.+..++.+.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~-- 160 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ-- 160 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc--
Confidence 99999999998889999999875321110 1112334567889999999988999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..+.++|.++.++ | .|||++|||++++.++|||+++|++|++++.
T Consensus 161 -----~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~----------~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 161 -----ETAIMLLDEPTTWLDISHQIDLLELLSELNREKG----------YTLAAVLHDLNQACRYASHLIALREGKIVAQ 225 (265)
T ss_pred -----CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 69999999999999999999999999999764 5 5999999999999999999999999999999
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|++.++..
T Consensus 226 g~~~~~~~ 233 (265)
T PRK10253 226 GAPKEIVT 233 (265)
T ss_pred CCHHHHhh
Confidence 98877653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=380.34 Aligned_cols=208 Identities=36% Similarity=0.595 Sum_probs=179.6
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEE
Q 018638 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (352)
Q Consensus 93 ~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v 172 (352)
+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. . .+.+++|+
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~--~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----K--ERKRIGYV 73 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----H--HHhheEEe
Confidence 3689999999888999999999999999999999999999999999999999999999998642 1 12369999
Q ss_pred ecCCCCC--CCCCHHHHHHhhhhhcCC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 173 FQSAALF--DSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 173 ~Q~~~l~--~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
||++.++ ..+||+||+.++...... ...+...+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~---- 149 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQ---- 149 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHc----
Confidence 9998763 237999999886432111 1123345678899999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||+|||+.++..+.+.|++++++| .|||++|||++++.++||++++|++| +++.|
T Consensus 150 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 150 ---DPDLLLLDEPFAGVDPKTQEDIYELLRELRREG----------MTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 699999999999999999999999999997665 59999999999999999999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=386.88 Aligned_cols=237 Identities=26% Similarity=0.459 Sum_probs=199.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||+++|+++.+|+||||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|+++........
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 457999999999998899999999999999999999999999999999999996 589999999998742111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+..|+|+||++.+|+ .||+||+.++..........+..+++.++++.+++. +..++++.+||||||||++|||
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lar 176 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIAR 176 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHH
Confidence 12346999999999887 699999988653222123344556788899999984 4678899999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++||+++++..+|||+++|++|
T Consensus 177 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~~~~~~d~i~~l~~G 238 (267)
T PRK14237 177 AIAV-------KPDILLMDEPASALDPISTMQLEETMFELKK-N----------YTIIIVTHNMQQAARASDYTAFFYLG 238 (267)
T ss_pred HHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C----------CEEEEEecCHHHHHHhcCEEEEEECC
Confidence 9997 6999999999999999999999999999954 4 49999999999999999999999999
Q ss_pred eEEEeeccccccc-CCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++++.|+++++.. +.+..+.+++.+
T Consensus 239 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (267)
T PRK14237 239 DLIEYDKTRNIFTNPKLQSTNDYVSG 264 (267)
T ss_pred EEEEeCCHHHHhcCCCcHHHHHhhhh
Confidence 9999999888754 344556666544
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=430.85 Aligned_cols=239 Identities=25% Similarity=0.434 Sum_probs=206.7
Q ss_pred cceEEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCC
Q 018638 89 DVLIDCRNVYKSFGE-----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157 (352)
Q Consensus 89 ~~~l~~~nls~~y~~-----------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~ 157 (352)
.++|+++||++.|+. +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+|+|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 468999999999961 469999999999999999999999999999999999999999999999998754
Q ss_pred CCChh-hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHH
Q 018638 158 LISDE-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKK 233 (352)
Q Consensus 158 ~~~~~-~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQ 233 (352)
..... ...+.+|+||||++ .+++.+||.+|+.+++..+.....++..+++.++|+.+||. +..+++|++|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 32111 11234699999997 58889999999988653322123444556788999999996 6789999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
||+|||||+. +|++|||||||++||+.++..++++|++++++ | .|||+||||++++..+|||
T Consensus 471 Rv~iAraL~~-------~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g----------~tvi~isHdl~~v~~~~dr 533 (623)
T PRK10261 471 RICIARALAL-------NPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG----------IAYLFISHDMAVVERISHR 533 (623)
T ss_pred HHHHHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCE
Confidence 9999999996 69999999999999999999999999999775 5 5999999999999999999
Q ss_pred EEEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 313 LIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
|++|++|+|++.|+++++. .+.+++++.++..
T Consensus 534 i~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 534 VAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred EEEEECCEEEEecCHHHHhcCCCCHHHHHHHhh
Confidence 9999999999999998875 4578898888764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=390.70 Aligned_cols=223 Identities=33% Similarity=0.521 Sum_probs=191.5
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC--hhh
Q 018638 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEE 163 (352)
Q Consensus 91 ~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--~~~ 163 (352)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999998753211 111
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 164 ~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArA 240 (352)
..+.+|+|+||++ .+|+ .||+||+.++.... +...++..+++.++++.+||. ...++++.+||||||||++||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 159 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI 159 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1233699999997 4665 69999998865322 234445566788899999997 57899999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.++|+++++++ .|||++|||++++..+||++++|++|+
T Consensus 160 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiiivsH~~~~~~~~~d~i~~l~~G~ 222 (280)
T PRK13649 160 LAM-------EPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG----------MTIVLVTHLMDDVANYADFVYVLEKGK 222 (280)
T ss_pred HHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeccHHHHHHhCCEEEEEECCE
Confidence 997 699999999999999999999999999997665 599999999999999999999999999
Q ss_pred EEEeeccccccc
Q 018638 321 IVWQGMTHEFTS 332 (352)
Q Consensus 321 iv~~g~~~~~~~ 332 (352)
+++.|+++++..
T Consensus 223 i~~~g~~~~~~~ 234 (280)
T PRK13649 223 LVLSGKPKDIFQ 234 (280)
T ss_pred EEEeCCHHHHhc
Confidence 999998877543
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=380.35 Aligned_cols=218 Identities=32% Similarity=0.557 Sum_probs=190.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|++.. .+|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .+.+++
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~---~~~~i~ 74 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-P---SRRPVS 74 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC-h---hhccEE
Confidence 589999999998654 4999999999999999999999999999999999999999999999865321 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+|+.+|+.||+.++....... .+...+++.++++.+|+++..++++.+||||||||++|||||+.
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 146 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVR------- 146 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhc-------
Confidence 9999999999899999998754211111 22335668899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..+.++|+++.++ | .|||++|||++++..+|||+++|++|++++.|++++
T Consensus 147 ~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 147 EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ----------LTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 69999999999999999999999999999764 5 599999999999999999999999999999998877
Q ss_pred ccc
Q 018638 330 FTS 332 (352)
Q Consensus 330 ~~~ 332 (352)
+..
T Consensus 217 ~~~ 219 (232)
T PRK10771 217 LLS 219 (232)
T ss_pred HHh
Confidence 764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-51 Score=383.31 Aligned_cols=237 Identities=32% Similarity=0.496 Sum_probs=197.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe-----CCCCCChhh-
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-----RAGLISDEE- 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~-----~~~~~~~~~- 163 (352)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++ +........
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 47999999999988889999999999999999999999999999999999999999999999976 433211111
Q ss_pred -hccceEEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 164 -ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 -~~~~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+|+|++|++. +++.+|+.+|+.+...........+..+.+.++++.+++. ...++.+.+|||||||||+|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 11235999999974 4556799999976432111111223446678999999997 5889999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
||+. +|++|||||||++||+.++..+.++|+++.++ | .|||+|||+++++..+||++++|++
T Consensus 162 al~~-------~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~vsH~~~~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 162 NLVT-------RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG----------LAVIIVTHDLGVARLLAQRLLVMQQ 224 (253)
T ss_pred HHhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9997 69999999999999999999999999998764 5 5999999999999999999999999
Q ss_pred CeEEEeeccccccc-CCcHHHHHHhc
Q 018638 319 GKIVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 319 G~iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
|++++.|+++++.. +.+++++.|+.
T Consensus 225 G~i~~~~~~~~~~~~~~~~~~~~~l~ 250 (253)
T TIGR02323 225 GRVVESGLTDQVLDDPQHPYTQLLVS 250 (253)
T ss_pred CEEEEECCHHHHhcCCCCHHHHHHHH
Confidence 99999998887653 44667777664
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-51 Score=381.60 Aligned_cols=234 Identities=30% Similarity=0.537 Sum_probs=196.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 69999999999988899999999999999999999999999999999999984 8999999999864311111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+++|+||++.+|+ .|++||+.+..........+...+.+.++++.+++.. ..++.+.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 346999999999888 8999999886533221223344566788899999853 47889999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||++||+.++..+.++|+++.+ + .|||++||+++.+..+||++++|++|++
T Consensus 162 ~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tili~sH~~~~~~~~~d~i~~l~~G~i 223 (250)
T PRK14262 162 AV-------EPEVILLDEPTSALDPIATQRIEKLLEELSE-N----------YTIVIVTHNIGQAIRIADYIAFMYRGEL 223 (250)
T ss_pred hC-------CCCEEEEeCCccccCHHHHHHHHHHHHHHhc-C----------cEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 97 6999999999999999999999999999864 4 4999999999999999999999999999
Q ss_pred EEeeccccccc-CCcHHHHHHhc
Q 018638 322 VWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 322 v~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
++.|+++++.. +.++....++.
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~ 246 (250)
T PRK14262 224 IEYGPTREIVERPKNKLTEEYLT 246 (250)
T ss_pred EEecCHHHHHhCCCChHHHHHhc
Confidence 99998888754 33455666553
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-51 Score=381.88 Aligned_cols=237 Identities=29% Similarity=0.495 Sum_probs=199.0
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--C---CceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--p---~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++........
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 357999999999998899999999999999999999999999999999999976 3 48999999998754211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+|+|+||++.+|+ .||+||+.+.............++.+.++++.+++. ...++.+.+||||||||++|||
T Consensus 84 ~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhhceEEEEecCCccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 12346999999999998 599999998653322122334456678889998874 3468899999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++||+++++.++||++++|++|
T Consensus 163 al~~-------~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~----------~tvii~sh~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14261 163 TLAV-------NPEVILMDEPCSALDPIATAKIEDLIEDLKK-E----------YTVIIVTHNMQQAARVSDYTGFMYLG 224 (253)
T ss_pred HHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-C----------ceEEEEEcCHHHHHhhCCEEEEEECC
Confidence 9997 5999999999999999999999999999875 3 49999999999999999999999999
Q ss_pred eEEEeeccccccc-CCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++++.|+++++.. +.++..+.++.+
T Consensus 225 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 250 (253)
T PRK14261 225 KLIEFDKTTQIFENPHEELTENYITG 250 (253)
T ss_pred EEEEcCCHHHHHhCCCcHHHHHHhcc
Confidence 9999998888653 445677777764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-52 Score=437.86 Aligned_cols=281 Identities=30% Similarity=0.485 Sum_probs=235.2
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCC-CCCCCCCCCccccccccCC
Q 018638 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDG-FPATKFNDSSKSENVNTLF 82 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (352)
++....+.+-..+..+.+|+..+.+.+ .-....+.+.+|+..+...|+.+..... .+-
T Consensus 407 lTlG~LiAf~~l~~~f~~pi~~L~~~~-----~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~---------------- 465 (709)
T COG2274 407 LTLGQLVAFNMLAGYFISPITRLSQLW-----TDFQQAKVALERLGDILDTPPEQEGDKTLIHL---------------- 465 (709)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCcccccccccccc----------------
Confidence 445677777788888899999998888 8888999999999999999975554431 110
Q ss_pred CCCCCCcceEEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC
Q 018638 83 EPEDDGDVLIDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 83 ~~~~~~~~~l~~~nls~~y~~~--~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~ 160 (352)
+.-.++ |+++||+|+|+.. .+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||.|+.....
T Consensus 466 -~~~~g~--I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~ 542 (709)
T COG2274 466 -PKLQGE--IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL 542 (709)
T ss_pred -cccCce--EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCH
Confidence 222333 9999999999754 69999999999999999999999999999999999999999999999999876532
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCCh
Q 018638 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSG 229 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSG 229 (352)
... |++||||+|++.+|. .|++|||+++. ...+ .+++.++++..|.+++..+.| ..|||
T Consensus 543 -~~l-R~~ig~V~Q~~~Lf~-gSI~eNi~l~~---p~~~----~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSG 612 (709)
T COG2274 543 -ASL-RRQVGYVLQDPFLFS-GSIRENIALGN---PEAT----DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSG 612 (709)
T ss_pred -HHH-HhheeEEcccchhhc-CcHHHHHhcCC---CCCC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCH
Confidence 222 447999999999997 59999999853 1122 244677888888888777665 68999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh
Q 018638 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (352)
Q Consensus 230 GqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~ 309 (352)
|||||++|||||++ +|+|||||||||+||+.+++.+.+.|.++.+. +|+|+|||+++.+..
T Consensus 613 GQrQrlalARaLl~-------~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~-----------~T~I~IaHRl~ti~~- 673 (709)
T COG2274 613 GQRQRLALARALLS-------KPKILLLDEATSALDPETEAIILQNLLQILQG-----------RTVIIIAHRLSTIRS- 673 (709)
T ss_pred HHHHHHHHHHHhcc-------CCCEEEEeCcccccCHhHHHHHHHHHHHHhcC-----------CeEEEEEccchHhhh-
Confidence 99999999999997 59999999999999999999999999998654 499999999999986
Q ss_pred cCEEEEEeCCeEEEeecccccccCCcHH
Q 018638 310 VDRLIFLYEGKIVWQGMTHEFTSSSNPI 337 (352)
Q Consensus 310 aDrv~vL~~G~iv~~g~~~~~~~~~~~~ 337 (352)
||||+||++|+|+++|+.+|+......+
T Consensus 674 adrIiVl~~Gkiv~~gs~~ell~~~g~y 701 (709)
T COG2274 674 ADRIIVLDQGKIVEQGSHEELLAQGGLY 701 (709)
T ss_pred ccEEEEccCCceeccCCHHHHHHhcChH
Confidence 6999999999999999888877654333
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=389.00 Aligned_cols=223 Identities=34% Similarity=0.589 Sum_probs=193.5
Q ss_pred cceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 89 DVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 89 ~~~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~-~~~~~-~ 82 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKE-NLKEI-R 82 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcC-CHHHH-h
Confidence 36899999999995 46799999999999999999999999999999999999999999999999987532 11222 3
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 167 ~~ig~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
.+++|+||++. .|+.+||+||+.++... .....++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 83 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-- 159 (271)
T PRK13632 83 KKIGIIFQNPDNQFIGATVEDDIAFGLEN-KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL-- 159 (271)
T ss_pred cceEEEEeCHHHhcCcccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 36999999984 56678999999886532 223445556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||+|||+.++..++++|+++++++. .|||++||+++.+. .||++++|++|++++.|
T Consensus 160 -----~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~---------~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g 224 (271)
T PRK13632 160 -----NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRK---------KTLISITHDMDEAI-LADKVIVFSEGKLIAQG 224 (271)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC---------cEEEEEEechhHHh-hCCEEEEEECCEEEEec
Confidence 6999999999999999999999999999976531 59999999999986 79999999999999999
Q ss_pred cccccc
Q 018638 326 MTHEFT 331 (352)
Q Consensus 326 ~~~~~~ 331 (352)
+++++.
T Consensus 225 ~~~~~~ 230 (271)
T PRK13632 225 KPKEIL 230 (271)
T ss_pred CHHHHh
Confidence 877754
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=385.90 Aligned_cols=222 Identities=32% Similarity=0.447 Sum_probs=193.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+++|
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS-RRAR-ARRVAL 79 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCC-HHHH-hhheEE
Confidence 68999999999999999999999999999999999999999999999999999999999999875432 2222 236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
++|++.+++.+||+||+.++.... ......+..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~----- 154 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ----- 154 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc-----
Confidence 999998777899999998753211 011122334567889999999989999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|+++||||||+|||+.++..+.++|++++++| .|||++|||++.+..+||||++|++|++++.|+.+
T Consensus 155 --~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 222 (256)
T TIGR03873 155 --EPKLLLLDEPTNHLDVRAQLETLALVRELAATG----------VTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPR 222 (256)
T ss_pred --CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHH
Confidence 699999999999999999999999999998765 59999999999999999999999999999999887
Q ss_pred cccc
Q 018638 329 EFTS 332 (352)
Q Consensus 329 ~~~~ 332 (352)
++..
T Consensus 223 ~~~~ 226 (256)
T TIGR03873 223 EVLT 226 (256)
T ss_pred HhhC
Confidence 7653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=420.31 Aligned_cols=224 Identities=24% Similarity=0.392 Sum_probs=197.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
+||+++||+++|+++.+|+|+||+|.+||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.++
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG-PKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHHHhCCE
Confidence 4799999999999888999999999999999999999999999999999999999999999999875321 222223469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
+|+||++.+++.+||+||+.++.... ...+..+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--- 158 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF--- 158 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhc---
Confidence 99999999999999999998864321 112334445678899999999988999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..++++|++++++| .|||+||||++++..+||||++|++|++++.|+
T Consensus 159 ----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~----------~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (501)
T PRK10762 159 ----ESKVIIMDEPTDALTDTETESLFRVIRELKSQG----------RGIVYISHRLKEIFEICDDVTVFRDGQFIAERE 224 (501)
T ss_pred ----CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 699999999999999999999999999997665 599999999999999999999999999999998
Q ss_pred ccccc
Q 018638 327 THEFT 331 (352)
Q Consensus 327 ~~~~~ 331 (352)
++++.
T Consensus 225 ~~~~~ 229 (501)
T PRK10762 225 VADLT 229 (501)
T ss_pred cCcCC
Confidence 77753
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=391.00 Aligned_cols=223 Identities=33% Similarity=0.533 Sum_probs=194.5
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc---eEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~---G~I~i~G~~~~~~~~~~~ 163 (352)
+.+|+++|++++|++ +.+|++|||+|++||+++|+||||||||||+++|+|+++|++ |+|+++|+++... ....
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~-~~~~ 81 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK-TVWD 81 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC-CHHH
Confidence 457999999999964 469999999999999999999999999999999999999998 8999999987532 1111
Q ss_pred hccceEEEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 164 ISGLRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
.+.+|||+||++. +++..||+||+.|.... .+...++..+++.++++.+||.++.++++.+|||||||||+|||||+
T Consensus 82 -~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~ 159 (282)
T PRK13640 82 -IREKVGIVFQNPDNQFVGATVGDDVAFGLEN-RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA 159 (282)
T ss_pred -HHhheEEEEECHHHhhccCCHHHHHHhhHHh-CCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 2346999999984 56678999999876432 23455566677899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
. +|++|||||||+|||+.++..+.++|++++++ | .|||++||+++++. .|||+++|++|++
T Consensus 160 ~-------~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tvli~tH~~~~~~-~~d~i~~l~~G~i 221 (282)
T PRK13640 160 V-------EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNN----------LTVISITHDIDEAN-MADQVLVLDDGKL 221 (282)
T ss_pred c-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHH-hCCEEEEEECCEE
Confidence 7 69999999999999999999999999999765 5 59999999999985 7999999999999
Q ss_pred EEeeccccccc
Q 018638 322 VWQGMTHEFTS 332 (352)
Q Consensus 322 v~~g~~~~~~~ 332 (352)
++.|+++++..
T Consensus 222 ~~~g~~~~~~~ 232 (282)
T PRK13640 222 LAQGSPVEIFS 232 (282)
T ss_pred EEeCCHHHHhc
Confidence 99998877643
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-51 Score=387.22 Aligned_cols=234 Identities=32% Similarity=0.496 Sum_probs=197.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCC-CChh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGL-ISDE 162 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~-~~~~ 162 (352)
+++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... ....
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 468999999999998889999999999999999999999999999999999987 6999999999986421 1112
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CcccccCCCCCChHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL----KGVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL----~~~~~~~~~~LSGGqrQRvaIA 238 (352)
.. +.+|+|+||++.+|+ .||+||+.+..... ... ....+++.++++.+++ .+..++++.+|||||||||+||
T Consensus 91 ~~-~~~i~~v~q~~~l~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 91 EV-RRRIGMVFQQPNPFP-KSIYENIAFGARIN-GYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred HH-hhceEEEccCCccch-hhHHHHHhhhhhhc-CCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 22 336999999999998 59999998865322 222 2334567778888876 3467889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||+|||+.++..+.++|+++++ + .|||++|||++++..+|||+++|++
T Consensus 167 ral~~-------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~----------~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 167 RTIAI-------EPEVILMDEPCSALDPISTLKIEETMHELKK-N----------FTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhcCEEEEEec
Confidence 99997 6999999999999999999999999999854 4 4999999999999999999999996
Q ss_pred -----------CeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 319 -----------GKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 319 -----------G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++++.|++.++.. +.++....++.+
T Consensus 229 ~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (269)
T PRK14259 229 EEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQDYISG 266 (269)
T ss_pred cccccccccccceEEEeCCHHHHHhCcCChHHHHHHhc
Confidence 67999999988754 456777777754
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=403.29 Aligned_cols=215 Identities=32% Similarity=0.507 Sum_probs=188.4
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC--hhhhccceEEEEe
Q 018638 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEEISGLRIGLVF 173 (352)
Q Consensus 96 nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--~~~~~~~~ig~v~ 173 (352)
||+|+|+++. + ++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .....+++|+|+|
T Consensus 4 ~l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 8999998876 4 9999999999999999999999999999999999999999999998743211 0011233699999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
|++.+|+.+||+||+.|++... ...+..+++.++++.+||.++.++++.+|||||||||+|||||+. +|+
T Consensus 82 q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~-------~p~ 151 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKRA---RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLS-------SPR 151 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhcc---ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc-------CCC
Confidence 9999999999999999875321 223345568899999999999999999999999999999999997 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
+|||||||++||+.++..+.++|++++++ | .|+|+||||++++..+||++++|++|++++.|+++++..
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFG----------IPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 99999999999999999999999999875 5 599999999999999999999999999999998888654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-51 Score=386.48 Aligned_cols=237 Identities=29% Similarity=0.475 Sum_probs=197.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChh
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~ 162 (352)
+.++|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 21 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 21 KKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred CceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 3568999999999998889999999999999999999999999999999999997 69999999999874211111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC----CCcccccCCCCCChHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG----LKGVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g----L~~~~~~~~~~LSGGqrQRvaIA 238 (352)
...+.+++|+||++.+|+ .|++||+.++.............+.+.++++.++ +.+..++++.+||||||||++||
T Consensus 101 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~la 179 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA 179 (271)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHH
Confidence 112336999999999887 5999999886532221122333455677787775 44567889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++..+|||+++|++
T Consensus 180 raL~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiivsH~~~~i~~~~d~i~~l~~ 241 (271)
T PRK14238 180 RCLAI-------EPDVILMDEPTSALDPISTLKVEELVQELKK-D----------YSIIIVTHNMQQAARISDKTAFFLN 241 (271)
T ss_pred HHHHc-------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-C----------CEEEEEEcCHHHHHHhCCEEEEEEC
Confidence 99997 6999999999999999999999999999965 4 4999999999999999999999999
Q ss_pred CeEEEeeccccccc-CCcHHHHHHhc
Q 018638 319 GKIVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 319 G~iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
|++++.|++.++.. +.++....++.
T Consensus 242 G~i~~~g~~~~~~~~~~~~~~~~~~~ 267 (271)
T PRK14238 242 GYVNEYDDTDKIFSNPSDKRTEDYIT 267 (271)
T ss_pred CEEEEeCCHHHHHcCCCCHHHHHHHh
Confidence 99999998888754 34566666664
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-51 Score=380.28 Aligned_cols=235 Identities=30% Similarity=0.503 Sum_probs=198.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++........ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~-~ 81 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD-L 81 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH-H
Confidence 58999999999988899999999999999999999999999999999999986 59999999998642111122 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+..++|+||++.+|+ .||.||+.+..........+...+++.++++.+++. +..++.+.+|||||||||+|||||
T Consensus 82 ~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 82 RIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 336999999999997 799999987643221112334456677889999874 456788999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||+|||+.++..+.++|++++++ .|||++||+++++..+|||+++|++|++
T Consensus 161 ~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sh~~~~~~~~~d~i~~l~~G~i 222 (249)
T PRK14253 161 AM-------EPDVILMDEPTSALDPIATHKIEELMEELKKN-----------YTIVIVTHSMQQARRISDRTAFFLMGEL 222 (249)
T ss_pred Hc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-----------CeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 97 69999999999999999999999999999653 4999999999999999999999999999
Q ss_pred EEeeccccccc-CCcHHHHHHhcCC
Q 018638 322 VWQGMTHEFTS-SSNPIVQQFASGS 345 (352)
Q Consensus 322 v~~g~~~~~~~-~~~~~~~~~~~~~ 345 (352)
++.|+++++.. +.++.+.+++.+.
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (249)
T PRK14253 223 VEHDDTQVIFSNPKDDRTQGYVNGD 247 (249)
T ss_pred EEeCCHHHHHcCCCChHHHHHhhcc
Confidence 99998877653 4566777776543
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=384.69 Aligned_cols=239 Identities=31% Similarity=0.480 Sum_probs=199.8
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCCh
Q 018638 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~ 161 (352)
+...+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++......
T Consensus 21 ~~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 21 DEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CCCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 34568999999999998889999999999999999999999999999999999987 4899999999987531111
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaI 237 (352)
....+.+++|+||++.+|+. |++||+.+..........+...+++.++++.+++. +..++.+.+|||||||||+|
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 179 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI 179 (272)
T ss_pred HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence 11123469999999999985 99999987643221112333445678889999985 35688999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||+|||+.++..+.++|+++++ + .|||++||+++++.++|||+++|+
T Consensus 180 aral~~-------~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~----------~tiiivtH~~~~~~~~~d~i~~l~ 241 (272)
T PRK14236 180 ARAIAI-------EPEVLLLDEPTSALDPISTLKIEELITELKS-K----------YTIVIVTHNMQQAARVSDYTAFMY 241 (272)
T ss_pred HHHHHC-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C----------CeEEEEeCCHHHHHhhCCEEEEEE
Confidence 999997 6999999999999999999999999999975 4 499999999999999999999999
Q ss_pred CCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 318 EGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+|++++.|+++++.. +.+..+.+++..
T Consensus 242 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 269 (272)
T PRK14236 242 MGKLVEYGDTDTLFTSPAKKQTEDYITG 269 (272)
T ss_pred CCEEEecCCHHHHhcCCCcHHHHHHhcc
Confidence 999999998888653 345666776543
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=379.57 Aligned_cols=236 Identities=28% Similarity=0.455 Sum_probs=196.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--C---CceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--p---~~G~I~i~G~~~~~~~~~~~~ 164 (352)
+||+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+.+ | ++|+|+++|+++.........
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 57999999999998889999999999999999999999999999999999975 5 599999999987431111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+++|+||++.+|+ .|+++|+.+..........+...+++.++++.+++. +..++.+.+||||||||++||||
T Consensus 84 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lara 162 (252)
T PRK14255 84 LRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARV 162 (252)
T ss_pred hcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHH
Confidence 2346999999999998 699999988653222112233345567788888763 45688999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.++|+++.++ .|||+|||+++++.++||||++|++|+
T Consensus 163 l~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~vsH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14255 163 LAV-------KPDVILLDEPTSALDPISSTQIENMLLELRDQ-----------YTIILVTHSMHQASRISDKTAFFLTGN 224 (252)
T ss_pred Hhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHhC-----------CEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 997 69999999999999999999999999999653 499999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+++.|++.++.. +.+...++++.+
T Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
T PRK14255 225 LIEFADTKQMFLNPKEKETEDYITG 249 (252)
T ss_pred EEEeCCHHHHhcCCCChHHHHHhcc
Confidence 999998887653 345556666654
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=389.37 Aligned_cols=237 Identities=30% Similarity=0.488 Sum_probs=197.8
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChh
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~ 162 (352)
+.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.......
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 4568999999999988889999999999999999999999999999999999864 49999999999864321111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIA 238 (352)
...+.+|+|+||++.+|+. ||+||+.++.......+.....+++.++++.+|+. +..++.+.+|||||||||+||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 1123469999999999884 99999998653222112333456678889999873 567889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++.++|||+++|++
T Consensus 195 raL~~-------~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~----------~tvIivsH~~~~~~~~~d~i~~L~~ 256 (286)
T PRK14275 195 RTLAV-------EPEILLLDEPTSALDPKATAKIEDLIQELRG-S----------YTIMIVTHNMQQASRVSDYTMFFYE 256 (286)
T ss_pred HHHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99997 6999999999999999999999999999864 3 4999999999999999999999999
Q ss_pred CeEEEeeccccccc-CCcHHHHHHhc
Q 018638 319 GKIVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 319 G~iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
|++++.|+++++.. +.++..+.++.
T Consensus 257 G~i~~~g~~~~~~~~~~~~~~~~~~~ 282 (286)
T PRK14275 257 GVLVEHAPTAQLFTNPKDRMTEDYIT 282 (286)
T ss_pred CEEEEeCCHHHHHhCCCcHHHHHHHH
Confidence 99999998888754 34555666554
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=419.92 Aligned_cols=224 Identities=25% Similarity=0.394 Sum_probs=197.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p--~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+||+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... ......+.
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~-~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQAS-NIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC-CHHHHHHC
Confidence 579999999999988899999999999999999999999999999999999996 899999999987542 22222234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
++|||||++.+++.+||+||+.+++..+ ...+.++..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~-- 160 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK-- 160 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc--
Confidence 6999999999999999999998865321 112334455678899999999988999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||++||+.++..++++|.+++++| .|||+||||++++..+||||++|++|++++.|
T Consensus 161 -----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~----------~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 225 (506)
T PRK13549 161 -----QARLLILDEPTASLTESETAVLLDIIRDLKAHG----------IACIYISHKLNEVKAISDTICVIRDGRHIGTR 225 (506)
T ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCcHHHHHHhcCEEEEEECCEEeeec
Confidence 699999999999999999999999999997666 59999999999999999999999999999999
Q ss_pred cccccc
Q 018638 326 MTHEFT 331 (352)
Q Consensus 326 ~~~~~~ 331 (352)
+++++.
T Consensus 226 ~~~~~~ 231 (506)
T PRK13549 226 PAAGMT 231 (506)
T ss_pred ccccCC
Confidence 887763
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=415.73 Aligned_cols=239 Identities=32% Similarity=0.546 Sum_probs=211.5
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC----ceEEEECCEeCCCCCCh
Q 018638 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYIRGRKRAGLISD 161 (352)
Q Consensus 90 ~~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~----~G~I~i~G~~~~~~~~~ 161 (352)
++|+++||++.|.. ..+++||||+|.+||++||||.|||||||+.++|+|++++. +|+|.|+|+++..+...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 47999999999953 26999999999999999999999999999999999999987 89999999987665433
Q ss_pred hh--hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc--cCCCCCChHHHHHH
Q 018638 162 EE--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED--RLPSELSGGMKKRV 235 (352)
Q Consensus 162 ~~--~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~--~~~~~LSGGqrQRv 235 (352)
.. .+..+|+||||+| .|.|-+||.+.|.-.+..+.....++..+++.++|+++||.+... ++|++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 22 2344699999997 567779999999887776665667888899999999999976554 59999999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
.||+||+. +|++||+||||++||+..+.+++++|+++.++.+ +++|+||||+..+.++||||+|
T Consensus 164 ~iAmALa~-------~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g---------~a~l~ITHDl~Vva~~aDrv~V 227 (539)
T COG1123 164 MIAMALAL-------KPKLLIADEPTTALDVTTQAQILDLLKDLQRELG---------MAVLFITHDLGVVAELADRVVV 227 (539)
T ss_pred HHHHHHhC-------CCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC---------cEEEEEcCCHHHHHHhcCeEEE
Confidence 99999996 6999999999999999999999999999986631 6999999999999999999999
Q ss_pred EeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 316 LYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
|++|++++.|++++++ .+.|+|++.++..
T Consensus 228 m~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a 257 (539)
T COG1123 228 MYKGEIVETGPTEEILSNPQHPYTRGLLAA 257 (539)
T ss_pred EECCEEEEecCHHHHHhccCCcccHHHHhh
Confidence 9999999999999976 5779999988764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-51 Score=376.65 Aligned_cols=229 Identities=38% Similarity=0.596 Sum_probs=199.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... .+..++|
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP----HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh----hhcceEE
Confidence 468999999998899999999999999999999999999999999999999999999999998754321 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
++|++.+|+.+|+.+|+.+..... +.......+++.++++.+|+.++.++.+.+||+|||||++|||||+. +
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~-------~ 148 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLK-KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVN-------E 148 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998765332 23344455678889999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+++||||||+|||+.++..+.++|++++++ | .|||++||+++++..+|||+++|++|++++.|+.+++
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~----------~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELG----------ITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999865 5 5999999999999999999999999999999977776
Q ss_pred ccC-CcHHHHHHh
Q 018638 331 TSS-SNPIVQQFA 342 (352)
Q Consensus 331 ~~~-~~~~~~~~~ 342 (352)
... .+...++|+
T Consensus 219 ~~~~~~~~~~~~~ 231 (232)
T cd03300 219 YEEPANRFVADFI 231 (232)
T ss_pred HhCCchHHHHHhc
Confidence 532 344555553
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-51 Score=419.61 Aligned_cols=224 Identities=28% Similarity=0.434 Sum_probs=197.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.+|
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~-~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCC-HHHHHHCCe
Confidence 5799999999999888999999999999999999999999999999999999999999999999875432 222223469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhc---CC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYEN---SK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~---~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
+||||++.+++.+||+||+.++.... .+ .+..+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998754211 11 1233455678899999999988999999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.++..++++|++++++| .|||+||||++++..+|||+++|++|++++
T Consensus 163 -------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tiiivsHd~~~~~~~~d~v~~l~~G~i~~ 225 (510)
T PRK09700 163 -------DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG----------TAIVYISHKLAEIRRICDRYTVMKDGSSVC 225 (510)
T ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEee
Confidence 699999999999999999999999999998766 599999999999999999999999999999
Q ss_pred eecccccc
Q 018638 324 QGMTHEFT 331 (352)
Q Consensus 324 ~g~~~~~~ 331 (352)
.|+++++.
T Consensus 226 ~g~~~~~~ 233 (510)
T PRK09700 226 SGMVSDVS 233 (510)
T ss_pred ecchhhCC
Confidence 99887764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-51 Score=373.09 Aligned_cols=210 Identities=35% Similarity=0.554 Sum_probs=182.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC--hhhhccceE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--~~~~~~~~i 169 (352)
+.+ ||+|+|+++.+ ||||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|+++..... .....+.++
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 445 99999998766 99999999 9999999999999999999999999999999999998642111 111123369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+|+.+|+.+|+.+..... ......+++.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------ 148 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA------ 148 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc------
Confidence 99999999998899999998764221 233345568889999999988899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||+|||+.+++.+.++|++++++ | .|||++|||++++..+||++++|++|++++.|
T Consensus 149 -~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 -QPELLLLDEPFSALDRALRLQLLPELKQIKKNLN----------IPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------cEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 69999999999999999999999999999775 5 59999999999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-51 Score=385.63 Aligned_cols=223 Identities=30% Similarity=0.463 Sum_probs=194.0
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 89 ~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ... .+
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~-~~~-~~ 82 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDN-FEK-LR 82 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-HHH-HH
Confidence 468999999999975 35999999999999999999999999999999999999999999999999875421 112 23
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 167 ~~ig~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
.+++|+||++. +|+..|+.+|+.+..... ....++..+++.++++.+++.++.++++.+||||||||++|||||+.
T Consensus 83 ~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-- 159 (269)
T PRK13648 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL-- 159 (269)
T ss_pred hheeEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 36999999984 677789999998865322 23444556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..+.+.|++++++ | .|||++||+++++.. ||||++|++|++++.
T Consensus 160 -----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~----------~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 160 -----NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN----------ITIISITHDLSEAME-ADHVIVMNKGTVYKE 223 (269)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCchHHhc-CCEEEEEECCEEEEe
Confidence 69999999999999999999999999999765 5 599999999999986 999999999999999
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 224 g~~~~~~~ 231 (269)
T PRK13648 224 GTPTEIFD 231 (269)
T ss_pred cCHHHHhc
Confidence 98877643
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-51 Score=388.37 Aligned_cols=221 Identities=34% Similarity=0.549 Sum_probs=192.9
Q ss_pred ceEEEEeEEEEeCC------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 90 VLIDCRNVYKSFGE------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
+||+++||+++|++ +.+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 57999999999963 469999999999999999999999999999999999999999999999998753211111
Q ss_pred hccceEEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
.++++||+||++. ++. .||.+|+.|+.... +....+..+++.++++.+||.++.++++.+|||||||||+|||||
T Consensus 83 -~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 83 -IRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENL-GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred -HhhheEEEecChhhhhcc-ccHHHHHHhhHhhc-CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 2346999999974 454 69999999875322 344555667789999999999999999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||+|||+.++..+.+.|++++++ | .|||++|||++++.. |||+++|++|+
T Consensus 160 ~~-------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tillvtH~~~~~~~-~d~v~~l~~G~ 221 (280)
T PRK13633 160 AM-------RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYG----------ITIILITHYMEEAVE-ADRIIVMDSGK 221 (280)
T ss_pred Hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecChHHHhc-CCEEEEEECCE
Confidence 97 69999999999999999999999999999764 5 599999999999986 99999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
+++.|+++++.
T Consensus 222 i~~~g~~~~~~ 232 (280)
T PRK13633 222 VVMEGTPKEIF 232 (280)
T ss_pred EEEecCHHHHh
Confidence 99999888764
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=381.87 Aligned_cols=236 Identities=29% Similarity=0.458 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.+|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.........
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 369999999999988899999999999999999999999999999999999985 589999999986421111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+|+|+||++.+|+ +|++||+.++..........+..+.+.++++.+++. +..++.+.+|||||||||+||||
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 2336999999999998 899999987653222123334456678889999883 46788999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe---
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY--- 317 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~--- 317 (352)
|+. +|++|||||||+|||+.++..+.++|+++++ + .|||++||+++++..+|||+++|+
T Consensus 165 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~i~~~~d~i~~l~~~~ 226 (259)
T PRK14260 165 LAI-------KPKVLLMDEPCSALDPIATMKVEELIHSLRS-E----------LTIAIVTHNMQQATRVSDFTAFFSTDE 226 (259)
T ss_pred Hhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhcCeEEEEeccC
Confidence 997 6999999999999999999999999999865 3 499999999999999999999998
Q ss_pred --CCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 318 --EGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 318 --~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+|++++.|++.++.. +.++.+.+++.+
T Consensus 227 ~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 256 (259)
T PRK14260 227 SRIGQMVEFGVTTQIFSNPLDSRTRDYVSG 256 (259)
T ss_pred CCCceEEEeCCHHHHhcCCCChHHHHhhhh
Confidence 599999999888753 456677776644
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-51 Score=417.76 Aligned_cols=219 Identities=32% Similarity=0.510 Sum_probs=196.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ......+.++
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARL-TPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC-CHHHHHhCCE
Confidence 579999999999988899999999999999999999999999999999999999999999999987543 2222223469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
||+||++.+++.+||+||+.++.. ...+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~------ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLP-----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR------ 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccc-----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc------
Confidence 999999999999999999988642 122345668899999999988999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+||||++|++|++++.|++++
T Consensus 158 -~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 158 -DSRILILDEPTASLTPAETERLFSRIRELLAQG----------VGIVFISHKLPEIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred -CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHH
Confidence 699999999999999999999999999998776 599999999999999999999999999999998877
Q ss_pred cc
Q 018638 330 FT 331 (352)
Q Consensus 330 ~~ 331 (352)
+.
T Consensus 227 ~~ 228 (510)
T PRK15439 227 LS 228 (510)
T ss_pred cC
Confidence 64
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-51 Score=371.61 Aligned_cols=211 Identities=32% Similarity=0.542 Sum_probs=184.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
++++||+++|+. .++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... . .+.+++|
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---~-~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA---P-YQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC---h-hccceEE
Confidence 478999999974 578999999999999999999999999999999999999999999999875321 1 1336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+|+.||+.+....... ...+..+++.++++.+|+.+..++.+.+||||||||++|||||+. +
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-------~ 146 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLK-LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVR-------P 146 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCC-ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhc-------C
Confidence 99999999889999999876432111 122234567889999999988999999999999999999999996 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
|+++||||||++||+.++..+.++|+++.++ + .|||+|||+++++..+||++++|++|++++.|+
T Consensus 147 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~----------~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQ----------RTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999765 4 599999999999999999999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=383.98 Aligned_cols=236 Identities=28% Similarity=0.472 Sum_probs=200.4
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++........
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4589999999999999999999999999999999999999999999999999986 79999999998753211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIAr 239 (352)
.+.+|+|+||++.+|+ .|+++|+.++..........+..+.+.++++.+++.. ..++.+.+||||||||++|||
T Consensus 99 -~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 99 -FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred -HhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 2336999999999998 7999999886532222244455556778899999864 467889999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||++||+.++..+.+.|++++++ .|||+|||+++++.++|||+++|++|
T Consensus 177 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-----------~tiiivsH~~~~~~~~~dri~~l~~G 238 (276)
T PRK14271 177 TLAV-------NPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-----------LTVIIVTHNLAQAARISDRAALFFDG 238 (276)
T ss_pred HHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9997 59999999999999999999999999998753 49999999999999999999999999
Q ss_pred eEEEeeccccccc-CCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++++.|+++++.. +.++....++.+
T Consensus 239 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK14271 239 RLVEEGPTEQLFSSPKHAETARYVAG 264 (276)
T ss_pred EEEEeCCHHHHHhCcCcHHHHHHHhh
Confidence 9999998888754 456666776654
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=385.01 Aligned_cols=237 Identities=32% Similarity=0.514 Sum_probs=198.7
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCCh
Q 018638 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~ 161 (352)
.+.++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+|+|+++......
T Consensus 35 ~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 34578999999999998889999999999999999999999999999999999987 6899999999986431111
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaI 237 (352)
....+.+++|+||++.+|+. ||+||+.+..... +... ...+++.++++.+|+. +..++++.+|||||||||+|
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~-~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ-GYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCI 191 (285)
T ss_pred hHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc-CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHH
Confidence 11123469999999998885 9999998865322 2222 3456688999999984 46788999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE-EE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI-FL 316 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~-vL 316 (352)
||||+. +|+||||||||+|||+.++..+.++|++++++ .|||++|||++++..+|||++ +|
T Consensus 192 AraL~~-------~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-----------~tiii~tH~~~~i~~~~dri~v~l 253 (285)
T PRK14254 192 ARAIAP-------DPEVILMDEPASALDPVATSKIEDLIEELAEE-----------YTVVIVTHNMQQAARISDKTAVFL 253 (285)
T ss_pred HHHHHc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHHhhcCEEEEEe
Confidence 999997 69999999999999999999999999999764 399999999999999999975 67
Q ss_pred eCCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 317 YEGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++|+|++.|+++++.. ..++.+.+++..
T Consensus 254 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 282 (285)
T PRK14254 254 TGGELVEFDDTDKIFENPESQRVEDYITG 282 (285)
T ss_pred eCCEEEEeCCHHHHHhCcCCHHHHHHhhh
Confidence 9999999998887653 445666776643
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=388.49 Aligned_cols=222 Identities=31% Similarity=0.455 Sum_probs=189.9
Q ss_pred eEEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCC---CChh
Q 018638 91 LIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL---ISDE 162 (352)
Q Consensus 91 ~l~~~nls~~y~~~-----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~---~~~~ 162 (352)
.|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ....
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 49999999999764 499999999999999999999999999999999999999999999999986421 0011
Q ss_pred hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
...+.+|+|++|++ .+++ .|++||+.++... .+...++..+++.++++.++|. ++.++++.+|||||||||+|||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVN-LGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 11233699999997 3455 6999999886532 2234445556678899999994 6889999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
||+. +|++|||||||+|||+.++..++++|+++.++ | +|||+|||+++++.++|||+++|++
T Consensus 164 al~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiiiisH~~~~~~~~~d~i~~l~~ 226 (289)
T PRK13645 164 IIAM-------DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK----------KRIIMVTHNMDQVLRIADEVIVMHE 226 (289)
T ss_pred HHHh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9997 59999999999999999999999999999764 5 5999999999999999999999999
Q ss_pred CeEEEeecccccc
Q 018638 319 GKIVWQGMTHEFT 331 (352)
Q Consensus 319 G~iv~~g~~~~~~ 331 (352)
|++++.|+++++.
T Consensus 227 G~i~~~g~~~~~~ 239 (289)
T PRK13645 227 GKVISIGSPFEIF 239 (289)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999877754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-51 Score=424.58 Aligned_cols=272 Identities=24% Similarity=0.326 Sum_probs=211.1
Q ss_pred HHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEe
Q 018638 17 KSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRN 96 (352)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n 96 (352)
..++.|+..+++.. ........+.+|+......|+....... . ..+.....-|+++|
T Consensus 298 ~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~~-----------------~-~~~~~~~~~i~~~~ 354 (588)
T PRK11174 298 PEFYQPLRDLGTFY-----HAKAQAVGAAESLVTFLETPLAHPQQGE-----------------K-ELASNDPVTIEAED 354 (588)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccCCCc-----------------c-ccCCCCCceEEEEe
Confidence 34456776666655 5667788888999998877642111000 0 00000112399999
Q ss_pred EEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecC
Q 018638 97 VYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (352)
Q Consensus 97 ls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~ 175 (352)
|++.| +++++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.+||+++..... ... +.+|+||+|+
T Consensus 355 vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~-~~l-r~~i~~v~Q~ 431 (588)
T PRK11174 355 LEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDP-ESW-RKHLSWVGQN 431 (588)
T ss_pred eEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCH-HHH-HhheEEecCC
Confidence 99755 5678999999999999999999999999999999999999 999999999999876533 333 3479999999
Q ss_pred CCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHHHHHHHHHHHHhcc
Q 018638 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGqrQRvaIArAL~~~ 244 (352)
+.+|+ .|++|||.++. ...++ +++.++++.++++++..+. ...||||||||++|||||++
T Consensus 432 ~~LF~-~TI~eNI~~g~---~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~- 502 (588)
T PRK11174 432 PQLPH-GTLRDNVLLGN---PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ- 502 (588)
T ss_pred CcCCC-cCHHHHhhcCC---CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc-
Confidence 99998 59999998852 12333 3466677777776554443 35799999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|+|||||||||+||+++++.+++.|+++.++ +|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 503 ------~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~-----------~TvIiItHrl~~i~~-aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 503 ------PCQLLLLDEPTASLDAHSEQLVMQALNAASRR-----------QTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQ 564 (588)
T ss_pred ------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCC-----------CEEEEEecChHHHHh-CCEEEEEeCCeEeec
Confidence 59999999999999999999999999988643 499999999999876 799999999999999
Q ss_pred ecccccccCCcHHHHHHh
Q 018638 325 GMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 325 g~~~~~~~~~~~~~~~~~ 342 (352)
|+.+++.... +...+++
T Consensus 565 G~~~eL~~~~-~~y~~l~ 581 (588)
T PRK11174 565 GDYAELSQAG-GLFATLL 581 (588)
T ss_pred CCHHHHHhcc-hHHHHHH
Confidence 9777776433 3334443
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-51 Score=386.61 Aligned_cols=230 Identities=27% Similarity=0.367 Sum_probs=193.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--------ceEEEECCEeCCCCCChh
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--------KGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~--------~G~I~i~G~~~~~~~~~~ 162 (352)
||+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.... ..
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~-~~ 79 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID-AP 79 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC-HH
Confidence 589999999999889999999999999999999999999999999999999998 999999999875322 22
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC---CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIAr 239 (352)
.. +..++|+||++.+++.+||+||+.++..... .....+..+++.++++.+|+.+..++++.+|||||||||+|||
T Consensus 80 ~~-~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 80 RL-ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HH-HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 22 2258999999876556899999988542111 1111233456788999999998899999999999999999999
Q ss_pred HHhccC--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 240 SIIFDN--TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 240 AL~~~~--~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
||+..| .+-+.+|++|||||||++||+.++..+.++|+++.++ | .|||+||||++++.++||++++|
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN----------LGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEEEEE
Confidence 999300 0001259999999999999999999999999999775 5 59999999999999999999999
Q ss_pred eCCeEEEeeccccccc
Q 018638 317 YEGKIVWQGMTHEFTS 332 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~ 332 (352)
++|++++.|+++++..
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999998877754
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=378.73 Aligned_cols=232 Identities=31% Similarity=0.504 Sum_probs=193.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhhhcc
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
-+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+.+ |++|+|+++|+++..........+
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 468999999998889999999999999999999999999999999999986 479999999997643211111123
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHHHH
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIArAL 241 (352)
.+++|+||++.+|+. |++||+.+....... ....+..+.+.++++.+|+.+ ..++.+.+|||||||||+|||||
T Consensus 86 ~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 86 AKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 469999999999985 999999876422211 123344566788999999964 46788999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||+|||+.++..+.+.|+++.+ + .|||++|||++++..+|||+++|++|++
T Consensus 165 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiiisH~~~~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 165 AV-------KPTMLLMDEPCSALDPVATNVIENLIQELKK-N----------FTIIVVTHSMKQAKKVSDRVAFFQSGRI 226 (251)
T ss_pred hc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 97 5999999999999999999999999999854 4 5999999999999999999999999999
Q ss_pred EEeeccccccc-CCcHHHHHHh
Q 018638 322 VWQGMTHEFTS-SSNPIVQQFA 342 (352)
Q Consensus 322 v~~g~~~~~~~-~~~~~~~~~~ 342 (352)
++.|+++++.. +.++...+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14244 227 VEYNTTQEIFKNPQSSKTKRYI 248 (251)
T ss_pred EEeCCHHHHhcCCCChHHHHhc
Confidence 99998888754 3455555554
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=379.56 Aligned_cols=237 Identities=29% Similarity=0.431 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-----ceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-----~G~I~i~G~~~~~~~~~~~~ 164 (352)
.+|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.........
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 3699999999998888999999999999999999999999999999999999986 89999999986321111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+..++|+||++.+|+ +|++||+.+...........+..+++.++++.+++.+ ..++.+.+||||||||++||||
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 2336999999999998 8999999876432211123344556788999998743 5688899999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC-
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE- 318 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~- 318 (352)
|+. +|++|||||||++||+.++..+.+.|++++++ + .|||+||||++++.++||||++|++
T Consensus 165 l~~-------~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~----------~tiiivsH~~~~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 165 LAV-------KPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE----------LTMVIVSHNLHQVSRLSDFTAFFKGN 227 (261)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHhcCEEEEEccC
Confidence 997 69999999999999999999999999998754 5 5999999999999999999999999
Q ss_pred ----CeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 319 ----GKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 319 ----G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++++.|+++++.. +......+++..
T Consensus 228 ~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (261)
T PRK14258 228 ENRIGQLVEFGLTKKIFNSPHDSRTREYVLS 258 (261)
T ss_pred CCcCceEEEeCCHHHHHhCCCCHHHHHHHHh
Confidence 99999999988764 345566665543
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=372.34 Aligned_cols=210 Identities=30% Similarity=0.566 Sum_probs=187.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . ...++|
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----~--~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----D--LHKIGS 74 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----c--cccEEE
Confidence 5789999999988999999999999999999999999999999999999999999999999875321 1 136999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+++.+|++||+.+..... ... .+++.++++.+|+++..++.+.+||||||||++|||||+. +
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~-------~ 142 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLL-GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLN-------H 142 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHc-CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998765322 122 2357789999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
|++|||||||+|||+.++..+.++|++++++| .|||++|||++++..+|||+++|++|+++..|++.+
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQG----------ITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999997665 599999999999999999999999999999997654
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=381.81 Aligned_cols=235 Identities=29% Similarity=0.445 Sum_probs=196.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++........
T Consensus 8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred ceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 458999999999998889999999999999999999999999999999999986 489999999998642111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+|+|+||++.+|+ .|++||+.++.... ... ....+++.++++.+++. +..++.+.+||||||||++|||
T Consensus 88 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN-GYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred HHhhhEEEEccCCcccc-ccHHHHHHhhhhhc-Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 12336999999999888 59999998865321 121 22345567778888874 3568899999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe--
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY-- 317 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~-- 317 (352)
||+. +|++|||||||++||+.++..+.++|+++.++ .|||++||+++++.++||||++|+
T Consensus 165 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-----------~tvi~vtH~~~~~~~~~d~v~~l~~~ 226 (264)
T PRK14243 165 AIAV-------QPEVILMDEPCSALDPISTLRIEELMHELKEQ-----------YTIIIVTHNMQQAARVSDMTAFFNVE 226 (264)
T ss_pred HHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-----------CEEEEEecCHHHHHHhCCEEEEEecc
Confidence 9997 69999999999999999999999999999653 499999999999999999999998
Q ss_pred -------CCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 318 -------EGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 318 -------~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+|++++.|++.++. .+.++.+++++.+
T Consensus 227 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 261 (264)
T PRK14243 227 LTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYVSG 261 (264)
T ss_pred cccccccCceEEEeCCHHHHHhCCCcHHHHHHhhh
Confidence 89999999998875 3456677776654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=374.29 Aligned_cols=218 Identities=31% Similarity=0.549 Sum_probs=193.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|+++ +|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++.... . . +.+++|
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~-~-~--~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP-P-E--KRDISY 75 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCC-h-h--HcCEEE
Confidence 5789999999875 899999999999999999999999999999999999999999999999875421 1 1 236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+|+.||+.+.... .+....+..+.+.++++.+||.+..++++.+||||||||++|||||+. +
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-------~ 147 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKK-RKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV-------N 147 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHc-------C
Confidence 99999999889999999876532 223344555677889999999999999999999999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+++||||||+|||+.++..+.++|+++..+ + .|+|++||+++++..+|||+++|++|++++.|+.+++
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~----------~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFG----------VTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999765 5 5999999999999999999999999999999987766
Q ss_pred cc
Q 018638 331 TS 332 (352)
Q Consensus 331 ~~ 332 (352)
..
T Consensus 218 ~~ 219 (235)
T cd03299 218 FK 219 (235)
T ss_pred Hh
Confidence 54
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=374.24 Aligned_cols=229 Identities=39% Similarity=0.641 Sum_probs=199.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .+..++|
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~---~-~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH---A-RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC---h-hhcCEEE
Confidence 47899999999889999999999999999999999999999999999999999999999999875321 1 1336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+|+.||+.+....+ ........+.+.++++.+++.++.++.+.+||+||+||++|||||+. +
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~-------~ 148 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIR-KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAV-------E 148 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998765322 23333445667899999999989999999999999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+++||||||+|||+.++..+.++|.+++++ + .|||++||+++++.++||++++|++|++++.|+.+++
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~----------~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH----------VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999775 5 5999999999999999999999999999999988776
Q ss_pred cc-CCcHHHHHHh
Q 018638 331 TS-SSNPIVQQFA 342 (352)
Q Consensus 331 ~~-~~~~~~~~~~ 342 (352)
.. +.++.+..++
T Consensus 219 ~~~~~~~~~~~~~ 231 (237)
T TIGR00968 219 YDHPANPFVMSFL 231 (237)
T ss_pred HcCCCcHHHHHhc
Confidence 53 3456655555
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=384.61 Aligned_cols=222 Identities=32% Similarity=0.501 Sum_probs=193.3
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 90 ~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+|+++||+++|++ ..+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|+|+|+++... .... .+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~-~~~~-~~ 80 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE-NVWN-LR 80 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcC-CHHH-Hh
Confidence 37999999999974 3599999999999999999999999999999999999999999999999987542 1122 23
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 167 ~~ig~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
.+|||+||++. +++..||.||+.++... .+...++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~-- 157 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMEN-QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL-- 157 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 46999999984 56668999999876532 223455556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||++||+.++..+.++|++++++ | .|||++|||++++. .||+|++|++|++++.
T Consensus 158 -----~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 158 -----RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ----------LTVLSITHDLDEAA-SSDRILVMKAGEIIKE 221 (277)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHH-hCCEEEEEECCEEEEe
Confidence 69999999999999999999999999999875 5 59999999999997 5999999999999999
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 222 g~~~~~~~ 229 (277)
T PRK13642 222 AAPSELFA 229 (277)
T ss_pred CCHHHHhc
Confidence 98877653
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=392.16 Aligned_cols=236 Identities=33% Similarity=0.541 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChh
Q 018638 90 VLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 90 ~~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~ 162 (352)
.+|+++|++++|. .+.+|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.|+|+++.......
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5799999999995 3579999999999999999999999999999999999986 57999999999875311111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCC-HHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR-DEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~-~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaI 237 (352)
...+.+++||||++.+|+ .|++|||.|+.... ... .+...+.+.++++.++|. ...++++.+|||||||||+|
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN-GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhc-CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 112346999999999996 79999999865322 122 223344567888998873 45688999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|+||||||||++||+.+...+.+.|+++.++ .|+|+|||+++++.++||||++|+
T Consensus 237 ARAl~~-------~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~-----------~Tii~iTH~l~~i~~~~Driivl~ 298 (329)
T PRK14257 237 ARAIAL-------EPEVLLMDEPTSALDPIATAKIEELILELKKK-----------YSIIIVTHSMAQAQRISDETVFFY 298 (329)
T ss_pred HHHHHh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999997 69999999999999999999999999998753 499999999999999999999999
Q ss_pred CCeEEEeecccccc-cCCcHHHHHHhcCC
Q 018638 318 EGKIVWQGMTHEFT-SSSNPIVQQFASGS 345 (352)
Q Consensus 318 ~G~iv~~g~~~~~~-~~~~~~~~~~~~~~ 345 (352)
+|+|++.|++.++. .+.++.+.+++.+.
T Consensus 299 ~G~i~e~g~~~~l~~~~~~~~~~~~~~~~ 327 (329)
T PRK14257 299 QGWIEEAGETKTIFIHPKNKRTKDYISGK 327 (329)
T ss_pred CCEEEEeCCHHHHhcCCCcHHHHHHhccc
Confidence 99999999999975 45677788887654
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-52 Score=379.43 Aligned_cols=218 Identities=30% Similarity=0.571 Sum_probs=204.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|++++|+|+||++.+++|+||++++|++.|++|||||||||.+|+|.|++.|++|+|.|+|.++... ...+||
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~------~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE------IKNRIG 75 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh------hhhhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999986531 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+|.+-.||+.+||.|.+.|.. ...+++.+++++++..||+++++.+...+++.+||.|++|++.+..|++|
T Consensus 76 yLPEERGLy~k~tv~dql~yla-~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviH------- 147 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLA-ELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIH------- 147 (300)
T ss_pred cChhhhccCccCcHHHHHHHHH-HhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhc-------
Confidence 9999999999999999999876 45568889999999999999999999999999999999999999999998
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|+++|||||||||||.+.+.+.+.+.+++.+| +|||++||.|+.++++||++++|++|+.|.+|+.+++
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G----------atIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~i 217 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEG----------ATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDI 217 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcC----------CEEEEecchHHHHHHHhhhhheecCCceEEeccHHHH
Confidence 699999999999999999999999999999988 6999999999999999999999999999999988876
Q ss_pred cc
Q 018638 331 TS 332 (352)
Q Consensus 331 ~~ 332 (352)
..
T Consensus 218 r~ 219 (300)
T COG4152 218 RR 219 (300)
T ss_pred HH
Confidence 53
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=424.50 Aligned_cols=238 Identities=26% Similarity=0.420 Sum_probs=201.7
Q ss_pred CcceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCC------
Q 018638 88 GDVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG------ 157 (352)
Q Consensus 88 ~~~~l~~~nls~~y~----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~------ 157 (352)
.+++|+++||+++|+ ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 456899999999996 2579999999999999999999999999999999999999999999999975421
Q ss_pred -C--CChh---hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---cccccCCCC
Q 018638 158 -L--ISDE---EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRLPSE 226 (352)
Q Consensus 158 -~--~~~~---~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~---~~~~~~~~~ 226 (352)
. .... ..++.+||||||++ .+++.+||+||+.+++..+.+.+..+..+++.++++.+||. ...++++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 0 0111 11223699999998 68888999999999764332345556667889999999995 357999999
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHH
Q 018638 227 LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 227 LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
|||||||||+|||||+. +|+||||||||++||+.++.++.++|++++++ | .|||+||||+++
T Consensus 169 LSgGq~QRv~iA~AL~~-------~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g----------~tvi~itHdl~~ 231 (623)
T PRK10261 169 LSGGMRQRVMIAMALSC-------RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS----------MGVIFITHDMGV 231 (623)
T ss_pred CCHHHHHHHHHHHHHhC-------CCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHH
Confidence 99999999999999996 69999999999999999999999999999865 5 599999999999
Q ss_pred HHhhcCEEEEEeCCeEEEeeccccccc-CCcHHHHHHh
Q 018638 306 IRRAVDRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 342 (352)
Q Consensus 306 i~~~aDrv~vL~~G~iv~~g~~~~~~~-~~~~~~~~~~ 342 (352)
+.++||||++|++|+|++.|+++++.. +.++++..++
T Consensus 232 ~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~l~ 269 (623)
T PRK10261 232 VAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALL 269 (623)
T ss_pred HHHhCCEEEEeeCCeecccCCHHHhhcCCCChhhhhhh
Confidence 999999999999999999998888753 3455555554
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-50 Score=380.90 Aligned_cols=236 Identities=28% Similarity=0.435 Sum_probs=196.5
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChh
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~ 162 (352)
..++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.......
T Consensus 17 ~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 34689999999999988899999999999999999999999999999999999863 6999999999864311111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIA 238 (352)
...+.+|+|+||++.+|+ .||+||+.++.... ... ....+.+.++++.+++. +..++++.+|||||||||+||
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFP-KSIYENIAFAPRAN-GYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred HHHhhcEEEEccCCcccc-ccHHHHHHhHHHhc-Cch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 112346999999999887 49999998864322 111 12334567788888873 457889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe-
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY- 317 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~- 317 (352)
|||+. +|++|||||||++||+.++..+.++|+++++ + .|||++|||++++.++|||+++|+
T Consensus 174 raL~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~----------~tiii~sH~~~~~~~~~d~i~~l~~ 235 (274)
T PRK14265 174 RAIAM-------KPDVLLMDEPCSALDPISTRQVEELCLELKE-Q----------YTIIMVTHNMQQASRVADWTAFFNT 235 (274)
T ss_pred HHHhh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhCCEEEEEec
Confidence 99997 6999999999999999999999999999964 4 499999999999999999999998
Q ss_pred --------CCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 318 --------EGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 318 --------~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+|++++.|++.++.. +.++.+++++.+
T Consensus 236 ~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~ 271 (274)
T PRK14265 236 EIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYISG 271 (274)
T ss_pred ccccccccCceEEEeCCHHHHHhCCCCHHHHHHhhh
Confidence 899999999988753 456667777654
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-51 Score=411.27 Aligned_cols=288 Identities=25% Similarity=0.375 Sum_probs=228.1
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCC
Q 018638 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
|+....+++++++--||.|+-.+++.. +--..-....+++......|....+...-. .
T Consensus 255 ltl~~~l~~LiLAPEff~PlR~lGs~f-----H~~~~g~aa~d~i~~~l~~~~~~~~~~~~~-----------------~ 312 (559)
T COG4988 255 LTLFAGLFVLILAPEFFQPLRDLGSFF-----HAAAAGEAAADKLFTLLESPVATPGSGEKA-----------------E 312 (559)
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHhhhhhHHHHHHHHhcCCCCCCCCcccc-----------------c
Confidence 344566677777778888888888777 666666666777777777665433332100 0
Q ss_pred CCCCCcceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 84 PEDDGDVLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
........++++|+++.|++. ++++|+||++++|+.++|||+||||||||+++|+|+.+|++|+|.+||.++..+....
T Consensus 313 ~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~ 392 (559)
T COG4988 313 VANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEA 392 (559)
T ss_pred cccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHH
Confidence 011112236677999999754 8999999999999999999999999999999999999999999999999987765444
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccccc----------CCCCCChHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR----------LPSELSGGMK 232 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~----------~~~~LSGGqr 232 (352)
++ ++++||+|+|++|+. |++|||.++- ...+ ++.+.++++++|+.++.++ ....|||||+
T Consensus 393 ~~--k~i~~v~Q~p~lf~g-TireNi~l~~---~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~ 462 (559)
T COG4988 393 WR--KQISWVSQNPYLFAG-TIRENILLAR---PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQA 462 (559)
T ss_pred HH--hHeeeeCCCCccccc-cHHHHhhccC---CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHH
Confidence 43 379999999999985 9999998853 1122 3446788888888777665 1246999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
|||++||||++ +++++|+||||++||.++++.+++.|.++.++ +|+|+|||++..+.+ +|+
T Consensus 463 QRlaLARAll~-------~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-----------ktvl~itHrl~~~~~-~D~ 523 (559)
T COG4988 463 QRLALARALLS-------PASLLLLDEPTAHLDAETEQIILQALQELAKQ-----------KTVLVITHRLEDAAD-ADR 523 (559)
T ss_pred HHHHHHHHhcC-------CCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-----------CeEEEEEcChHHHhc-CCE
Confidence 99999999997 59999999999999999999999999999887 499999999999987 599
Q ss_pred EEEEeCCeEEEeecccccccCCcHHHHHHhc
Q 018638 313 LIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
|++|++|++++.|..+++...+ +....++.
T Consensus 524 I~vld~G~l~~~g~~~~L~~~~-~~y~~l~~ 553 (559)
T COG4988 524 IVVLDNGRLVEQGTHEELSEKQ-GLYANLLK 553 (559)
T ss_pred EEEecCCceeccCCHHHHhhcC-cHHHHHHH
Confidence 9999999999999887776443 33444443
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-50 Score=377.86 Aligned_cols=237 Identities=30% Similarity=0.547 Sum_probs=200.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE------eCCCCCChh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR------KRAGLISDE 162 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~------~~~~~~~~~ 162 (352)
.++|+++|++++|+++.+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+ ++... ...
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~-~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI-DAI 86 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC-CHH
Confidence 47899999999999999999999999999999999999999999999999999999987777764 33221 111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIA 238 (352)
. .+.+++|+||++.+|+.+|++||+.++.........++..+++.++++.+++. +..++.+..||||||||++||
T Consensus 87 ~-~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 165 (257)
T PRK14246 87 K-LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165 (257)
T ss_pred H-HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHH
Confidence 1 23469999999999988999999998753221123345556788999999996 456889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|+++||||||++||+.++..+.+.|.++.+ + .|||+|||+++++..+||++++|++
T Consensus 166 ral~~-------~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiilvsh~~~~~~~~~d~v~~l~~ 227 (257)
T PRK14246 166 RALAL-------KPKVLLMDEPTSMIDIVNSQAIEKLITELKN-E----------IAIVIVSHNPQQVARVADYVAFLYN 227 (257)
T ss_pred HHHHc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------cEEEEEECCHHHHHHhCCEEEEEEC
Confidence 99997 6999999999999999999999999999864 3 4999999999999999999999999
Q ss_pred CeEEEeeccccccc-CCcHHHHHHhcCC
Q 018638 319 GKIVWQGMTHEFTS-SSNPIVQQFASGS 345 (352)
Q Consensus 319 G~iv~~g~~~~~~~-~~~~~~~~~~~~~ 345 (352)
|++++.|+++++.. +.++..+.|+.|.
T Consensus 228 g~i~~~g~~~~~~~~~~~~~~~~~~~~~ 255 (257)
T PRK14246 228 GELVEWGSSNEIFTSPKNELTEKYVIGR 255 (257)
T ss_pred CEEEEECCHHHHHhCCCcHHHHHHhhcc
Confidence 99999998888764 4566777776553
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=426.83 Aligned_cols=279 Identities=28% Similarity=0.412 Sum_probs=221.1
Q ss_pred ccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 018638 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (352)
....+.+...+..++.++..+.+.. ..........+|+......|....... . .+
T Consensus 391 iG~lva~~~l~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~e~~~~~-~-------------------~~ 445 (686)
T TIGR03797 391 LGSFLAFNTAFGSFSGAVTQLSNTL-----ISILAVIPLWERAKPILEALPEVDEAK-T-------------------DP 445 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCcccccCc-C-------------------CC
Confidence 3445555555666677777777666 667778888899988877654211000 0 00
Q ss_pred CCCcceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 86 DDGDVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
......|+++||+++|+ ++++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||+++..... ..
T Consensus 446 ~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~-~~ 524 (686)
T TIGR03797 446 GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV-QA 524 (686)
T ss_pred CCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH-HH
Confidence 01112499999999995 3579999999999999999999999999999999999999999999999999876533 33
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMK 232 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqr 232 (352)
. +.+||||+|++.+|+ .|++|||.++. . .+ ++++.++++.+|++++.++.| ..||||||
T Consensus 525 l-r~~i~~v~Q~~~lf~-gTI~eNi~~~~---~-~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 525 V-RRQLGVVLQNGRLMS-GSIFENIAGGA---P-LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred H-HhccEEEccCCccCc-ccHHHHHhcCC---C-CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 2 347999999999997 59999998852 1 22 234678889999887665554 57999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
||++|||||++ +|++||||||||+||+.+++.+++.|+++ + .|+|+|||+++.+.. |||
T Consensus 595 QRialARAll~-------~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~----------~T~IiItHr~~~i~~-~D~ 653 (686)
T TIGR03797 595 QRLLIARALVR-------KPRILLFDEATSALDNRTQAIVSESLERL---K----------VTRIVIAHRLSTIRN-ADR 653 (686)
T ss_pred HHHHHHHHHhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHh---C----------CeEEEEecChHHHHc-CCE
Confidence 99999999997 59999999999999999999999999876 3 499999999999876 799
Q ss_pred EEEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 313 LIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|++|++|+|++.|+.+++... +....+++
T Consensus 654 Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~ 682 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELMAR-EGLFAQLA 682 (686)
T ss_pred EEEEECCEEEEECCHHHHHhC-CcHHHHHH
Confidence 999999999999987777654 34444444
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-50 Score=373.65 Aligned_cols=235 Identities=31% Similarity=0.517 Sum_probs=197.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++..........
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 5899999999998889999999999999999999999999999999999874 48999999999874311111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+++|+||++.+|+. |+.||+.++...+.....+..++++.++++.+|+. ...++.+.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 3469999999999984 99999987643222123344567788899999984 356888999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||+|||+.++..+.++|+++++ + .|||++||+++++..+||++++|++|++
T Consensus 162 ~~-------~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~----------~tiii~sh~~~~~~~~~~~i~~l~~G~i 223 (250)
T PRK14266 162 AV-------SPEVILMDEPCSALDPISTTKIEDLIHKLKE-D----------YTIVIVTHNMQQATRVSKYTSFFLNGEI 223 (250)
T ss_pred Hc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEECCHHHHHhhcCEEEEEECCeE
Confidence 97 6999999999999999999999999999964 4 4999999999999999999999999999
Q ss_pred EEeeccccccc-CCcHHHHHHhcC
Q 018638 322 VWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 322 v~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++.|+++++.. +.++.+.+++.+
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14266 224 IESGLTDQIFINPKDKRTEDYITG 247 (250)
T ss_pred EEeCCHHHHHhCCCChHHHHHhcc
Confidence 99999888753 455666776643
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-51 Score=419.36 Aligned_cols=285 Identities=29% Similarity=0.443 Sum_probs=221.7
Q ss_pred ccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 018638 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (352)
+.....|++-.+.+-..+..+++.. +-.-+.-.+-+|+.+.....|+-... ... .|
T Consensus 404 ~g~L~sFllY~~~~g~sl~~ls~~y-----s~lmkgvGAs~rvFel~dr~P~i~~~-G~~------------------~p 459 (716)
T KOG0058|consen 404 SGALSSFLLYQVQLGSSLSGLSSFY-----SELMKGVGASERVFELMDRKPRIPLT-GTL------------------AP 459 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcchHHHHHHHhccCCCCCCC-Ccc------------------cc
Confidence 3333444544555555555555544 44445556677888888877643322 110 11
Q ss_pred CCCcceEEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 86 DDGDVLIDCRNVYKSFGEK---HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~~~---~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
..-.-.|+++||+|+|+.+ ++|+|+||+|++||++|||||||+||||+.++|..|++|++|+|.+||+|+.++. ..
T Consensus 460 ~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~-~~ 538 (716)
T KOG0058|consen 460 DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN-HK 538 (716)
T ss_pred ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC-HH
Confidence 1112349999999999764 5999999999999999999999999999999999999999999999999998764 44
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGq 231 (352)
+.+ ++||+|-|+|.||. -||+|||+|+.. ..+.+ ++..+.++.+.+++....| .+|||||
T Consensus 539 ~lr-~~Ig~V~QEPvLFs-~sI~eNI~YG~~---~~t~e----~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 539 YLR-RKIGLVGQEPVLFS-GSIRENIAYGLD---NATDE----EIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred HHH-HHeeeeeccceeec-ccHHHHHhcCCC---CCCHH----HHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 443 47999999999997 599999999874 23333 3555666666655554444 6999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|||+||||||++ +|.||||||.||+||.+++..+.+.|.++.++ .|||+|+|+++++++ ||
T Consensus 610 KQRIAIARALlr-------~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-----------rTVlvIAHRLSTV~~-Ad 670 (716)
T KOG0058|consen 610 KQRIAIARALLR-------NPRVLILDEATSALDAESEYLVQEALDRLMQG-----------RTVLVIAHRLSTVRH-AD 670 (716)
T ss_pred HHHHHHHHHHhc-------CCCEEEEechhhhcchhhHHHHHHHHHHhhcC-----------CeEEEEehhhhHhhh-cc
Confidence 999999999998 59999999999999999999999999998765 499999999999987 69
Q ss_pred EEEEEeCCeEEEeecccccccCCcHHHHHHhc
Q 018638 312 RLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
+|+|+++|++++.|+-+|++...+....++.+
T Consensus 671 ~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~ 702 (716)
T KOG0058|consen 671 QIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQ 702 (716)
T ss_pred EEEEEcCCeEEecccHHHHhhCcccHHHHHHH
Confidence 99999999999999777777665444555544
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=368.84 Aligned_cols=212 Identities=34% Similarity=0.576 Sum_probs=185.1
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhcc
Q 018638 92 IDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISG 166 (352)
Q Consensus 92 l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~ 166 (352)
|+++||++.|++ +.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|+++|+++....... ...+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 789999999975 67999999999999999999999999999999999999999999999999875322111 1123
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
.+|+|+||++.+|+.+|+.||+.+..........++..+++.++++.+|+.+..++++.+||+|||||++|||||+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~--- 158 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH--- 158 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc---
Confidence 46999999999998899999999865433223445556678999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||++||+.++..+.++|++++++ + .|||++||+++. .++||+|++|++|++
T Consensus 159 ----~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 159 ----RPKLVLADEPTAALDSKSGRDVVELMQKLAREQG----------CTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred ----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 69999999999999999999999999999764 4 599999999985 579999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-51 Score=358.03 Aligned_cols=216 Identities=37% Similarity=0.565 Sum_probs=192.1
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--h
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~--~ 164 (352)
+|++++++|..+. ..+|++|+|.|++||.++||||||||||||+-+++||..|++|+|++.|+++..+..+.. .
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 6999999999864 569999999999999999999999999999999999999999999999999887654432 3
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
+.+++|||||.+.|.|+||..||++.++.... -...+....+.++|+++||.+.+..+|.+|||||||||+|||||+.
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g-e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~- 163 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRG-ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG- 163 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcC-CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC-
Confidence 44579999999999999999999999985443 2334445667899999999999999999999999999999999985
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
.|+||+.||||.+||..+-+.+.++|..+.++.. +|.|+||||...+.+ |+|++.|.+|+|+++
T Consensus 164 ------~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G---------~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~ 227 (228)
T COG4181 164 ------RPDVLFADEPTGNLDRATGDKIADLLFALNRERG---------TTLVLVTHDPQLAAR-CDRQLRLRSGRLVED 227 (228)
T ss_pred ------CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcC---------ceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence 7999999999999999999999999999987631 699999999999987 699999999999753
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=418.98 Aligned_cols=283 Identities=29% Similarity=0.442 Sum_probs=226.8
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+....+.++.....++.++..++... ........+.+|+.+....|+.-...... ..
T Consensus 267 ~~g~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~~~~~------------------~~ 323 (567)
T COG1132 267 TVGALAAFILYLLRLLTPILQLGEVV-----SLLQRASAAAERLFELLDEEPEVEDPPDP------------------LK 323 (567)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCccccCCCCC------------------CC
Confidence 34556677777777788888888777 77788888999999999886531111100 01
Q ss_pred CCCCcceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 85 EDDGDVLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
...+ -|+++||+++|+ ++++|+|+||+|++||.+|||||||||||||+++|+|+++|++|+|.+||+++........
T Consensus 324 ~~~~--~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 324 DTIG--SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCC--eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 1112 299999999998 5789999999999999999999999999999999999999999999999999987543332
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccccc-----------CCCCCChHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR-----------LPSELSGGMK 232 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSGGqr 232 (352)
+.+|+||||++.+|. .||+|||.++.. ..+++ ++.++++.++++++..+ ....||||||
T Consensus 402 --r~~I~~V~Qd~~LF~-~TI~~NI~~g~~---~at~e----ei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 402 --RKRIGIVSQDPLLFS-GTIRENIALGRP---DATDE----EIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred --HHhccEEcccceeec-ccHHHHHhcCCC---CCCHH----HHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 337999999999998 699999999642 12333 35556666655544333 3468999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
||++|||||++ +|++||||||||+||+.++..+++.+.++. ++ +|+|+|+|+++++.. ||+
T Consensus 472 QrlaiARall~-------~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~----------rT~iiIaHRlsti~~-aD~ 532 (567)
T COG1132 472 QRLAIARALLR-------NPPILILDEATSALDTETEALIQDALKKLL-KG----------RTTLIIAHRLSTIKN-ADR 532 (567)
T ss_pred HHHHHHHHHhc-------CCCEEEEeccccccCHHhHHHHHHHHHHHh-cC----------CEEEEEeccHhHHHh-CCE
Confidence 99999999998 599999999999999999999999999887 43 488999999999998 799
Q ss_pred EEEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 313 LIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|+||++|+|++.|+.+++... +...+++.
T Consensus 533 IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~ 561 (567)
T COG1132 533 IIVLDNGRIVERGTHEELLAK-GGLYARLY 561 (567)
T ss_pred EEEEECCEEEEecCHHHHHHc-CCHHHHHH
Confidence 999999999999988888765 33444443
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=418.74 Aligned_cols=282 Identities=22% Similarity=0.355 Sum_probs=215.9
Q ss_pred cchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q 018638 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (352)
....++......++.++..+.... ..........+|+......|....... . ..+
T Consensus 282 g~~~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~~~~~~~~~~~~-~-------------------~~~ 336 (582)
T PRK11176 282 GTITVVFSSMIALMRPLKSLTNVN-----AQFQRGMAACQTLFAILDLEQEKDEGK-R-------------------VIE 336 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCcCCCCC-c-------------------CCC
Confidence 343344444445566777666555 566677777888887776653211000 0 000
Q ss_pred CCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhh
Q 018638 87 DGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.....|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++||+++....... .
T Consensus 337 ~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~-~ 415 (582)
T PRK11176 337 RAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLAS-L 415 (582)
T ss_pred CCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHH-H
Confidence 11123999999999964 56999999999999999999999999999999999999999999999999987653222 2
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKK 233 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQ 233 (352)
+.+|+||||++.+|+ .|++|||.++.. ...+ ++++.++++.+|++++.++.| .+|||||||
T Consensus 416 -~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~--~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 416 -RNQVALVSQNVHLFN-DTIANNIAYART--EQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred -HhhceEEccCceeec-chHHHHHhcCCC--CCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 336999999999998 599999988531 1122 334677788888766555443 569999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
|++|||||++ +|++|||||||++||+.++..+++.|.++.++ +|+|+|||+++.+.. ||+|
T Consensus 488 Ri~LARall~-------~~~ililDEptsaLD~~t~~~i~~~l~~~~~~-----------~tvI~VtHr~~~~~~-~D~I 548 (582)
T PRK11176 488 RIAIARALLR-------DSPILILDEATSALDTESERAIQAALDELQKN-----------RTSLVIAHRLSTIEK-ADEI 548 (582)
T ss_pred HHHHHHHHHh-------CCCEEEEECccccCCHHHHHHHHHHHHHHhCC-----------CEEEEEecchHHHHh-CCEE
Confidence 9999999997 59999999999999999999999999988543 499999999998765 8999
Q ss_pred EEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 314 IFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
++|++|++++.|+.+++.... +..++++
T Consensus 549 i~l~~g~i~e~g~~~~l~~~~-~~y~~l~ 576 (582)
T PRK11176 549 LVVEDGEIVERGTHAELLAQN-GVYAQLH 576 (582)
T ss_pred EEEECCEEEEeCCHHHHHhCC-ChHHHHH
Confidence 999999999999877776443 3334443
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=371.80 Aligned_cols=221 Identities=27% Similarity=0.421 Sum_probs=189.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--CCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
++|+++||++.|+++.+|++|||+|++||+++|+|+||||||||+++|+|+ ++|++|+|+++|+++.... .....+.
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~~ 84 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE-PEERAHL 84 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC-hhhhhee
Confidence 479999999999988899999999999999999999999999999999998 5899999999999875432 2222222
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcC---C---CCHHHHHHHHHHHHHHcCCC-cccccCCC-CCChHHHHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENS---K---MRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALAR 239 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~---~---~~~~~~~~~v~~~l~~~gL~-~~~~~~~~-~LSGGqrQRvaIAr 239 (352)
.++|+||++.+++.+|+.+|+.+...... . ....+..+++.++++.+|+. ...++.+. +|||||||||+|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 48999999999999999999987542111 0 11223345678899999997 47788887 59999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh-cCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~-aDrv~vL~~ 318 (352)
||+. +|++|||||||++||+.++..+.++|+++.++| .|||++|||++++..+ ||++++|++
T Consensus 165 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tii~~tH~~~~~~~~~~d~i~~l~~ 227 (252)
T CHL00131 165 MALL-------DSELAILDETDSGLDIDALKIIAEGINKLMTSE----------NSIILITHYQRLLDYIKPDYVHVMQN 227 (252)
T ss_pred HHHc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHhhhCCEEEEEeC
Confidence 9997 699999999999999999999999999998665 5999999999999886 899999999
Q ss_pred CeEEEeeccc
Q 018638 319 GKIVWQGMTH 328 (352)
Q Consensus 319 G~iv~~g~~~ 328 (352)
|++++.|+++
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 9999999775
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-50 Score=416.96 Aligned_cols=267 Identities=25% Similarity=0.406 Sum_probs=210.1
Q ss_pred HHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcce
Q 018638 12 FPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVL 91 (352)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (352)
+...+..+..|+..++... ........+.+++......+..+.... . ..... ..
T Consensus 287 ~~~~~~~~~~pl~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~-------------~------~~~~~--~~ 340 (592)
T PRK10790 287 FISYLGRLNEPLIELTTQQ-----SMLQQAVVAGERVFELMDGPRQQYGND-------------D------RPLQS--GR 340 (592)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCccCCCC-------------c------cCCCC--Ce
Confidence 3333344556666655555 555666777777777665543211000 0 00111 23
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++....... . +.+|+
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~-l-~~~i~ 418 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSV-L-RQGVA 418 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHH-H-HhheE
Confidence 999999999964 56999999999999999999999999999999999999999999999999987643322 2 34799
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHH
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALAR 239 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIAr 239 (352)
||+|++.+|+. |++|||.++. ..+. +++.++++.+|++++.++.| ..||||||||++|||
T Consensus 419 ~v~Q~~~lF~~-Ti~~NI~~~~----~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 419 MVQQDPVVLAD-TFLANVTLGR----DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred EEccCCccccc-hHHHHHHhCC----CCCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 99999999985 9999998852 1232 34677888888876665544 579999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||++ +|+||||||||++||+.+++.+.+.|+++.++ +|+|+|||+++.+.. ||+|++|++|
T Consensus 490 aLl~-------~~~illlDEpts~LD~~t~~~i~~~l~~~~~~-----------~tvIivtHr~~~l~~-~D~ii~l~~G 550 (592)
T PRK10790 490 VLVQ-------TPQILILDEATANIDSGTEQAIQQALAAVREH-----------TTLVVIAHRLSTIVE-ADTILVLHRG 550 (592)
T ss_pred HHHh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCC-----------CEEEEEecchHHHHh-CCEEEEEECC
Confidence 9997 59999999999999999999999999988654 499999999998875 7999999999
Q ss_pred eEEEeecccccccCC
Q 018638 320 KIVWQGMTHEFTSSS 334 (352)
Q Consensus 320 ~iv~~g~~~~~~~~~ 334 (352)
++++.|+.+++....
T Consensus 551 ~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 551 QAVEQGTHQQLLAAQ 565 (592)
T ss_pred EEEEEcCHHHHHhCC
Confidence 999999888876544
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=409.08 Aligned_cols=220 Identities=24% Similarity=0.361 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+|
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~-~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFA-STTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC-CHHHHHhCCE
Confidence 579999999999988899999999999999999999999999999999999999999999999987532 2222223469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhc-CC-CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYEN-SK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~-~~-~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
||+||++.+++.+||+||+.++.... .+ ....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~---- 157 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR---- 157 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh----
Confidence 99999999999999999998864211 11 2344556678899999999888899999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+.++..+.++|++++++| .|||+||||++++..+||||++|++|+++..++.
T Consensus 158 ---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 158 ---NARVIAFDEPTSSLSAREIEQLFRVIRELRAEG----------RVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred ---CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 699999999999999999999999999997766 5999999999999999999999999999887653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=410.62 Aligned_cols=236 Identities=27% Similarity=0.444 Sum_probs=198.6
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCC
Q 018638 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 90 ~~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~ 160 (352)
+||+++||+++|++ +.+|++|||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++.....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 47999999999963 5799999999999999999999999999999999999987 79999999998754322
Q ss_pred hh--hhccceEEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc---ccccCCCCCChHHHH
Q 018638 161 DE--EISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKK 233 (352)
Q Consensus 161 ~~--~~~~~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~---~~~~~~~~LSGGqrQ 233 (352)
.. ..++.+||||||++. +++.+|+.+|+.+......+.+..+..+++.++++.+||.+ ..++++.+|||||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 11 112246999999975 67778999998765422223344556677899999999975 468999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
||+|||||+. +|++|||||||++||+.++..++++|++++++ | .|||+||||++++..+|||
T Consensus 164 rv~iAraL~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~dr 226 (529)
T PRK15134 164 RVMIAMALLT-------RPELLIADEPTTALDVSVQAQILQLLRELQQELN----------MGLLFITHNLSIVRKLADR 226 (529)
T ss_pred HHHHHHHHhc-------CCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcC----------CeEEEEcCcHHHHHHhcCE
Confidence 9999999996 69999999999999999999999999999765 5 5999999999999999999
Q ss_pred EEEEeCCeEEEeeccccccc-CCcHHHHHHh
Q 018638 313 LIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 342 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~-~~~~~~~~~~ 342 (352)
|++|++|++++.|+++++.. +.+...+.++
T Consensus 227 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 257 (529)
T PRK15134 227 VAVMQNGRCVEQNRAATLFSAPTHPYTQKLL 257 (529)
T ss_pred EEEEECCEEEEeCCHHHHhhCCCCHHHHHHH
Confidence 99999999999998887653 3344555554
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=427.58 Aligned_cols=282 Identities=27% Similarity=0.428 Sum_probs=219.2
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCC
Q 018638 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
++....+.+...+..++.|+..+.... ..........+|+......|....... ... ......
T Consensus 407 lt~G~lva~~~l~~~~~~p~~~l~~~~-----~~~~~~~~~~~ri~~il~~~~e~~~~~-~~~---------~~~~~~-- 469 (710)
T TIGR03796 407 LTIGMLVAFQSLMSSFLEPVNNLVGFG-----GTLQELEGDLNRLDDVLRNPVDPLLEE-EEA---------PAAGSE-- 469 (710)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccccc-ccc---------cccccc--
Confidence 344555566666667778888777777 677888889999999887764321110 000 000000
Q ss_pred CCCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 84 PEDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
+.......|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.++.....
T Consensus 470 ~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~- 548 (710)
T TIGR03796 470 PSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPR- 548 (710)
T ss_pred cCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCH-
Confidence 00111124999999999974 579999999999999999999999999999999999999999999999999876432
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGG 230 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGG 230 (352)
... +.+||||+|++.+|+ .|++|||.++. ...+. +++.++++.+|++++.++.| ..||||
T Consensus 549 ~~l-r~~i~~v~Q~~~lf~-gTi~eNi~l~~---~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGG 619 (710)
T TIGR03796 549 EVL-ANSVAMVDQDIFLFE-GTVRDNLTLWD---PTIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619 (710)
T ss_pred HHH-HhheeEEecCChhhh-ccHHHHhhCCC---CCCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHH
Confidence 222 347999999999997 59999998742 11233 34667788888776555443 679999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
||||++|||||++ +|++||||||||+||+.++..+++.|++ .+ +|+|+|||+++.+.. |
T Consensus 620 QrQRiaLARall~-------~p~iliLDEptS~LD~~te~~i~~~l~~---~~----------~T~IiitHrl~~i~~-~ 678 (710)
T TIGR03796 620 QRQRLEIARALVR-------NPSILILDEATSALDPETEKIIDDNLRR---RG----------CTCIIVAHRLSTIRD-C 678 (710)
T ss_pred HHHHHHHHHHHhh-------CCCEEEEECccccCCHHHHHHHHHHHHh---cC----------CEEEEEecCHHHHHh-C
Confidence 9999999999997 5999999999999999999999999875 34 599999999999876 8
Q ss_pred CEEEEEeCCeEEEeecccccccC
Q 018638 311 DRLIFLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~~~ 333 (352)
|||++|++|+|++.|+.+++...
T Consensus 679 D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 679 DEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred CEEEEEeCCEEEEecCHHHHHHc
Confidence 99999999999999987777643
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=373.27 Aligned_cols=228 Identities=26% Similarity=0.421 Sum_probs=194.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC----CceEEEECCEeCCCCCChhhhcc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP----DKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p----~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
+|+++||+++| ++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. ....+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~----~~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP----CALRG 78 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc----ccccc
Confidence 69999999999 56799999999999999999999999999999999999999 99999999998642 11223
Q ss_pred ceEEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc---ccccCCCCCChHHHHHHHHHHHH
Q 018638 167 LRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 167 ~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~---~~~~~~~~LSGGqrQRvaIArAL 241 (352)
.+|+|+||++. +.+.+|+.+|+.+.+.... ... ..+++.++++.+++.+ ..++.+.+|||||||||+|||||
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral 155 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALG-KPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL 155 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcC-CCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence 36999999974 4556799999876432221 222 2356788999999986 57899999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||++||+.++..+.++|++++++ | .|||++||+++++..+|||+++|++|+
T Consensus 156 ~~-------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~til~~sH~~~~~~~~~d~v~~l~~G~ 218 (254)
T PRK10418 156 LC-------EAPFIIADEPTTDLDVVAQARILDLLESIVQKRA----------LGMLLVTHDMGVVARLADDVAVMSHGR 218 (254)
T ss_pred hc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcC----------cEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 97 69999999999999999999999999999765 5 599999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhc
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
+++.|+++++.. +.++..+.++.
T Consensus 219 i~~~~~~~~~~~~~~~~~~~~~~~ 242 (254)
T PRK10418 219 IVEQGDVETLFNAPKHAVTRSLVS 242 (254)
T ss_pred EEEecCHHHHhhCCCCHHHHHHHH
Confidence 999998888754 34556666654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-50 Score=412.33 Aligned_cols=237 Identities=28% Similarity=0.489 Sum_probs=201.2
Q ss_pred CcceEEEEeEEEEeC-----------CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCC
Q 018638 88 GDVLIDCRNVYKSFG-----------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (352)
Q Consensus 88 ~~~~l~~~nls~~y~-----------~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~ 156 (352)
..++|+++||+++|+ ++.+|++|||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH 350 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence 346899999999995 3579999999999999999999999999999999999984 8999999999875
Q ss_pred CCCChhh-hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcC-CCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHH
Q 018638 157 GLISDEE-ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGM 231 (352)
Q Consensus 157 ~~~~~~~-~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGq 231 (352)
....... ..+.+|+||||++ .+++.+||+||+.+++..+. .....+..+++.++++.+|+. +..++++.+|||||
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 430 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ 430 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence 4321111 1133699999997 47888999999998653221 123344456788999999997 57899999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
||||+|||||+. +|++|||||||++||+.++..++++|++++++ | .|||+||||++++..+|
T Consensus 431 ~qrv~la~al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~vsHd~~~~~~~~ 493 (529)
T PRK15134 431 RQRIAIARALIL-------KPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ----------LAYLFISHDLHVVRALC 493 (529)
T ss_pred HHHHHHHHHHhC-------CCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhC----------CEEEEEeCCHHHHHHhc
Confidence 999999999996 69999999999999999999999999999865 5 59999999999999999
Q ss_pred CEEEEEeCCeEEEeeccccccc-CCcHHHHHHh
Q 018638 311 DRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 342 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~~-~~~~~~~~~~ 342 (352)
|||++|++|+|++.|+++++.. +.++++++++
T Consensus 494 d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 526 (529)
T PRK15134 494 HQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLL 526 (529)
T ss_pred CeEEEEECCEEEEEcCHHHHhcCCCChHHHHHh
Confidence 9999999999999998888754 4567777765
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=352.43 Aligned_cols=235 Identities=32% Similarity=0.526 Sum_probs=207.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC--CCCCChhhh--cc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR--AGLISDEEI--SG 166 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~--~~~~~~~~~--~~ 166 (352)
.|+++|+++.||...+|-||+|+.++||.+.++||||||||||+|.++-|.-|++|+..|.|... +.....+.. .+
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999988643 222222222 23
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
+.+|+|||+..|+|.+||.||+......-.+.++++...++.++|+++.|.++.|+.|-.|||||+|||+|||||+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm---- 157 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM---- 157 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh----
Confidence 4699999999999999999999775444456788888888999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
++|++||+||||++|||+-..++.++|++|...| .|-++|||..+.+.+.|.+|+.|++|+|++.|+
T Consensus 158 ---mkpqvllfdeptaaldpeitaqvv~iikel~~tg----------itqvivthev~va~k~as~vvyme~g~ive~g~ 224 (242)
T COG4161 158 ---MEPQVLLFDEPTAALDPEITAQIVSIIKELAETG----------ITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred ---cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcC----------ceEEEEEeehhHHHhhhhheEeeecCeeEeecc
Confidence 4799999999999999999999999999999877 699999999999999999999999999999998
Q ss_pred ccccccCCcHHHHHHh
Q 018638 327 THEFTSSSNPIVQQFA 342 (352)
Q Consensus 327 ~~~~~~~~~~~~~~~~ 342 (352)
...+..+..+....++
T Consensus 225 a~~ft~p~te~f~~yl 240 (242)
T COG4161 225 ASCFTEPQTEAFKNYL 240 (242)
T ss_pred hhhccCccHHHHHHHh
Confidence 8888766555544444
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-50 Score=369.39 Aligned_cols=216 Identities=31% Similarity=0.447 Sum_probs=184.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.+
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~ 82 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLK-PEIY-RQQ 82 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCC-HHHH-Hhc
Confidence 46899999999999888999999999999999999999999999999999999999999999999875432 2222 336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
++|+||++.+|+ .|++||+.+...... ... ..+++.++++.+++. ...++++.+|||||||||+|||||+.
T Consensus 83 i~~~~q~~~l~~-~tv~enl~~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~---- 154 (225)
T PRK10247 83 VSYCAQTPTLFG-DTVYDNLIFPWQIRN-QQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF---- 154 (225)
T ss_pred cEEEeccccccc-ccHHHHHHhHHhhcC-CCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc----
Confidence 999999999887 599999987543221 111 234567899999996 57899999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe-CCeEEEee
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY-EGKIVWQG 325 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~-~G~iv~~g 325 (352)
+|++|||||||++||+.++..+.++|+++.++ | .|||++||+++++. .||++++|+ ++..+++|
T Consensus 155 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 155 ---MPKVLLLDEITSALDESNKHNVNEIIHRYVREQN----------IAVLWVTHDKDEIN-HADKVITLQPHAGEMQEA 220 (225)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECChHHHH-hCCEEEEEecccchHhhh
Confidence 69999999999999999999999999999764 5 59999999999996 699999995 55666777
Q ss_pred cccc
Q 018638 326 MTHE 329 (352)
Q Consensus 326 ~~~~ 329 (352)
.+|
T Consensus 221 -~~~ 223 (225)
T PRK10247 221 -RYE 223 (225)
T ss_pred -hhc
Confidence 443
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-50 Score=362.59 Aligned_cols=204 Identities=39% Similarity=0.577 Sum_probs=177.3
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hhhccceEEE
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLRIGL 171 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~~~~~~ig~ 171 (352)
++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...... ....+++++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 47999999988999999999999999999999999999999999999999999999999985422111 1122346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
++|++.+|+.+|++||+.+.... .+....+..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~-------~ 152 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKY-KKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK-------D 152 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc-------C
Confidence 99999999989999999986532 223344556678899999999989999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|++|||||||++||+.++..+.++|+++.+++ .|+|++||+++.+ .+||++++|
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDEG----------KTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHH-hhcCEEEeC
Confidence 99999999999999999999999999997665 5999999999976 579999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-50 Score=408.43 Aligned_cols=219 Identities=21% Similarity=0.321 Sum_probs=192.3
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.+++|+|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS-SKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCC-HHHHHhCCEEEEe
Confidence 468999999889999999999999999999999999999999999999999999999999875322 2222234699999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCC--CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 174 QSAALFDSLTVRENVGFLLYENSK--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~--~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
|++.+++.+||+||+.++.....+ ....+..+++.++++.+++....++++.+|||||||||+|||||+. +
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~-------~ 152 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY-------N 152 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh-------C
Confidence 999989889999999876422111 1334445678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+||||++|++|++++.|+++++
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG----------CGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999997766 5999999999999999999999999999999987775
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=407.49 Aligned_cols=222 Identities=24% Similarity=0.422 Sum_probs=193.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p--~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+|+++||+++|+++.+|++|||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.... .....+.+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN-IRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC-HHHHHhCC
Confidence 48999999999988899999999999999999999999999999999999987 7999999999875432 22222346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhc--C-CCCHHHHHHHHHHHHHHcCCCccc-ccCCCCCChHHHHHHHHHHHHhcc
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYEN--S-KMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~--~-~~~~~~~~~~v~~~l~~~gL~~~~-~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
||||||++.+++.+||+||+.++.... . ....++..+++.++++.+++.+.. ++++.+|||||||||+|||||+.
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~- 158 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK- 158 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh-
Confidence 999999999999999999998864321 1 123344556788999999998654 67899999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+||+|++|++|+++..
T Consensus 159 ------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 159 ------QARLLILDEPSSSLTEKETEILLDIIRDLKAHG----------VACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 699999999999999999999999999998766 5999999999999999999999999999999
Q ss_pred eccccc
Q 018638 325 GMTHEF 330 (352)
Q Consensus 325 g~~~~~ 330 (352)
++++++
T Consensus 223 ~~~~~~ 228 (500)
T TIGR02633 223 KDMSTM 228 (500)
T ss_pred cCcccC
Confidence 877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=373.02 Aligned_cols=236 Identities=28% Similarity=0.468 Sum_probs=197.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCC--h
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLIS--D 161 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~--~ 161 (352)
..+|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++..... .
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 3569999999999988899999999999999999999999999999999999975 79999999986531100 1
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCC-HHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR-DEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~-~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRva 236 (352)
....+.+|+|+||++.+|+. |++||+.++.... +.. ....++.+.++++.+++. +..++.+.+|||||||||+
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR-GVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLC 171 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc-CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHH
Confidence 11123369999999999985 9999998865322 222 223345677888888873 4668889999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||+|||+.++..+.++|+++++ + .|||+|||+++++..+|||+++|
T Consensus 172 laral~~-------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~----------~tiiivth~~~~~~~~~d~i~~l 233 (265)
T PRK14252 172 IARALAT-------DPEILLFDEPTSALDPIATASIEELISDLKN-K----------VTILIVTHNMQQAARVSDYTAYM 233 (265)
T ss_pred HHHHHHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C----------CEEEEEecCHHHHHHhCCEEEEE
Confidence 9999997 6999999999999999999999999999965 3 49999999999999999999999
Q ss_pred eCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 317 YEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++|++++.|+.+++. .+.++++++++.+
T Consensus 234 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 262 (265)
T PRK14252 234 YMGELIEFGATDTIFIKPKNKQTEDYITG 262 (265)
T ss_pred ECCEEEEeCCHHHHHhCCCCHHHHHHHhh
Confidence 999999999888865 4557778877754
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-50 Score=402.21 Aligned_cols=224 Identities=32% Similarity=0.483 Sum_probs=203.8
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++++++||+|+||+.++|++|||+|.+||++||+|.||||||||+|+|+|.++||+|+|+++|+.... .++.+.....
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~-~sp~~A~~~G 84 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAF-SSPRDALAAG 84 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccC-CCHHHHHhCC
Confidence 467999999999999999999999999999999999999999999999999999999999999998754 3455555567
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcC---CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
|+.|+|+.+|+|++||.|||-++..... ..+++++.+++.++|+.+|+....+.++.+||.||||.|+|||||..
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~-- 162 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF-- 162 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc--
Confidence 9999999999999999999987754332 35778889999999999999544899999999999999999999986
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+++|||||||||+|+....+.+++++++|+++| .+||+|||+|+++.++||||.||+||+.+...
T Consensus 163 -----~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~G----------v~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~ 227 (500)
T COG1129 163 -----DARVLILDEPTAALTVKETERLFDLIRRLKAQG----------VAIIYISHRLDEVFEIADRITVLRDGRVVGTR 227 (500)
T ss_pred -----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCcHHHHHHhcCEEEEEeCCEEeeec
Confidence 599999999999999999999999999999988 69999999999999999999999999999998
Q ss_pred cc-ccc
Q 018638 326 MT-HEF 330 (352)
Q Consensus 326 ~~-~~~ 330 (352)
+. .++
T Consensus 228 ~~~~~~ 233 (500)
T COG1129 228 PTAAET 233 (500)
T ss_pred ccccCC
Confidence 73 554
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=380.63 Aligned_cols=240 Identities=32% Similarity=0.492 Sum_probs=199.2
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCCh
Q 018638 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~ 161 (352)
+..++|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|+++|+++......
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 44568999999999998899999999999999999999999999999999999986 6899999999987431111
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC-----------CCC-HHHHHHHHHHHHHHcCCC----cccccCCC
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS-----------KMR-DEQISELVKENLAAVGLK----GVEDRLPS 225 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~-----------~~~-~~~~~~~v~~~l~~~gL~----~~~~~~~~ 225 (352)
....+.+|+|+||++.+|+ .||+||+.++..... ... .....+++.++++.+++. +..++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 1112336999999999888 599999998643211 011 123356678899999884 45688899
Q ss_pred CCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 226 ~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
+|||||||||+|||||++ +|+||||||||+|||+.++..+.++|++++++ .|||+|||+++.
T Consensus 200 ~LSgGq~qrv~LAraL~~-------~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-----------~tiiivtH~~~~ 261 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAV-------DPEVILMDEPASALDPIATSKIEDLIEELAEE-----------YTVVVVTHNMQQ 261 (305)
T ss_pred cCCHHHHHHHHHHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-----------CEEEEEEcCHHH
Confidence 999999999999999997 69999999999999999999999999999764 499999999999
Q ss_pred HHhhcCEE-EEEeCCeEEEeeccccccc-CCcHHHHHHhcCC
Q 018638 306 IRRAVDRL-IFLYEGKIVWQGMTHEFTS-SSNPIVQQFASGS 345 (352)
Q Consensus 306 i~~~aDrv-~vL~~G~iv~~g~~~~~~~-~~~~~~~~~~~~~ 345 (352)
+..+|||+ ++|++|++++.|+++++.. ..++.+.+++.+.
T Consensus 262 i~~~~d~i~~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 303 (305)
T PRK14264 262 AARISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYITGK 303 (305)
T ss_pred HHHhcCEEEEEecCCEEEEeCCHHHHHhCcccHHHHHHhccc
Confidence 99999996 5789999999998888754 3456777777653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-50 Score=423.93 Aligned_cols=276 Identities=30% Similarity=0.422 Sum_probs=221.1
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCC
Q 018638 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
++....+.+......++.|+..+.+.. ........+.+|+......|+........ .
T Consensus 399 ls~G~l~a~~~~~~~~~~p~~~l~~~~-----~~~~~~~~~~~ri~~il~~~~e~~~~~~~----------------~-- 455 (694)
T TIGR03375 399 LTMGGLIACVMLSGRALAPLGQLAGLL-----TRYQQAKTALQSLDELMQLPVERPEGTRF----------------L-- 455 (694)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCCCCCCC----------------C--
Confidence 344555666666777788888877777 67788889999999988876532110000 0
Q ss_pred CCCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 84 PEDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
........|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++......
T Consensus 456 ~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 456 HRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA 535 (694)
T ss_pred CCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHH
Confidence 00011124999999999964 5699999999999999999999999999999999999999999999999998765332
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGG 230 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGG 230 (352)
.. +.+|+||+|++.+|+ .|++|||.++. ...+. +++.++++.++++++.++.| ..||||
T Consensus 536 -~l-r~~i~~v~Q~~~lf~-~TI~eNi~~~~---~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 536 -DL-RRNIGYVPQDPRLFY-GTLRDNIALGA---PYADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred -HH-HhccEEECCChhhhh-hhHHHHHhCCC---CCCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 22 347999999999998 59999998752 11233 34677788888876665554 579999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
||||++|||||++ +|++||||||||+||+.++..+++.|.++.++ +|+|+|||+++.+. .|
T Consensus 606 QrQRlalARall~-------~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~-----------~T~iiItHrl~~~~-~~ 666 (694)
T TIGR03375 606 QRQAVALARALLR-------DPPILLLDEPTSAMDNRSEERFKDRLKRWLAG-----------KTLVLVTHRTSLLD-LV 666 (694)
T ss_pred HHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCC-----------CEEEEEecCHHHHH-hC
Confidence 9999999999997 59999999999999999999999999998653 49999999999885 58
Q ss_pred CEEEEEeCCeEEEeecccccc
Q 018638 311 DRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~ 331 (352)
|||++|++|++++.|+.+++.
T Consensus 667 D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 667 DRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred CEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999766654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=371.60 Aligned_cols=235 Identities=32% Similarity=0.476 Sum_probs=197.0
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~ 163 (352)
.+.+.+++++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++........
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3569999999999998999999999999999999999999999999999999986 79999999998743211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+|+|+||++.+|+ +|++||+.++..... . ..+..+.+.++++.+++.. ..++++.+||||||||++|||
T Consensus 86 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lar 162 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFS-MSIFDNVAFGLRLNR-Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIAR 162 (261)
T ss_pred hhhhceEEEecCCcccc-ccHHHHHHHHHhhcC-c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 22346999999999884 899999988753221 2 2234567888999999853 446788999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe--
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY-- 317 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~-- 317 (352)
||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++||+++++.++||||++|+
T Consensus 163 al~~-------~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~----------~tii~isH~~~~i~~~~d~v~~l~~~ 224 (261)
T PRK14263 163 AIAT-------EPEVLLLDEPCSALDPIATRRVEELMVELKK-D----------YTIALVTHNMQQAIRVADTTAFFSVD 224 (261)
T ss_pred HHHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEEEEEecc
Confidence 9997 6999999999999999999999999999954 4 499999999999999999999996
Q ss_pred ------CCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 318 ------EGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 318 ------~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+|++++.|+++++.. +.++....++.+
T Consensus 225 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 258 (261)
T PRK14263 225 ISQGTRTGYLVEMGPTAQIFQNPREQLTSDYISG 258 (261)
T ss_pred cccccCCceEEEeCCHHHHHhCCCcHHHHHHhhc
Confidence 899999998888754 334555666654
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-50 Score=424.44 Aligned_cols=278 Identities=22% Similarity=0.328 Sum_probs=218.5
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCC
Q 018638 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
++....+.+...+..+++|+..+.+.. ........+.+|+......|......... .
T Consensus 409 ls~G~lva~~~l~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~e~~~~~~~----------------~-- 465 (708)
T TIGR01193 409 LTLGQLITFNALLSYFLTPLENIINLQ-----PKLQAARVANNRLNEVYLVDSEFINKKKR----------------T-- 465 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccccccc----------------c--
Confidence 344555556666666778887777766 66777888899999988776432111000 0
Q ss_pred CCCCCcceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 84 PEDDGDVLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
........|+++||+|+|+ ++++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++.......
T Consensus 466 ~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 466 ELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHT 545 (708)
T ss_pred CCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHH
Confidence 0001112399999999997 467999999999999999999999999999999999999999999999999987653333
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGM 231 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGq 231 (352)
. +.+||||+|++.+|+. |++|||.++.. ...+. +++.++++.++++++.++. ...|||||
T Consensus 546 -l-r~~i~~v~Q~~~lf~g-TI~eNi~l~~~--~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 546 -L-RQFINYLPQEPYIFSG-SILENLLLGAK--ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred -H-HHheEEEecCceehhH-HHHHHHhccCC--CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 2 3369999999999975 99999988521 11233 3456777777776554433 36799999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|||++|||||++ +|++|||||||++||+.+++.+++.|+++ ++ .|+|+|||+++.+. .||
T Consensus 617 rQRialARall~-------~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~----------~T~IiitHr~~~~~-~~D 676 (708)
T TIGR01193 617 KQRIALARALLT-------DSKVLILDESTSNLDTITEKKIVNNLLNL--QD----------KTIIFVAHRLSVAK-QSD 676 (708)
T ss_pred HHHHHHHHHHhh-------CCCEEEEeCccccCCHHHHHHHHHHHHHh--cC----------CEEEEEecchHHHH-cCC
Confidence 999999999997 59999999999999999999999999875 34 49999999999886 589
Q ss_pred EEEEEeCCeEEEeecccccccC
Q 018638 312 RLIFLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~~~~ 333 (352)
+|++|++|++++.|+.+++...
T Consensus 677 ~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 677 KIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred EEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999987777643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=368.82 Aligned_cols=206 Identities=31% Similarity=0.551 Sum_probs=178.7
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe-cCCC
Q 018638 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF-QSAA 177 (352)
Q Consensus 99 ~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~-Q~~~ 177 (352)
+.|+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ... .+.+++|++ |++.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~--~~~-~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR--RKK-FLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc--chh-hcccEEEEcCCccc
Confidence 566777899999999999999999999999999999999999999999999999875321 111 233699998 5577
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEE
Q 018638 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257 (352)
Q Consensus 178 l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLL 257 (352)
+++.+|++||+.+..... +...++..+++.++++.+|+.+..++++.+||||||||++|||||+. +|++|||
T Consensus 106 ~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~-------~p~llll 177 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIY-DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLH-------EPEILFL 177 (236)
T ss_pred cCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-------CCCEEEE
Confidence 888899999998765322 23444555677889999999988999999999999999999999997 6999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 258 DEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 258 DEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
||||++||+.++..+.++|++++++ + .|||++||+++++..+||++++|++|++++.|
T Consensus 178 DEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 178 DEPTIGLDVVAQENIRNFLKEYNRERG----------TTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCC----------CEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999765 4 59999999999999999999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=364.88 Aligned_cols=213 Identities=28% Similarity=0.498 Sum_probs=184.0
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC---CCceEEEECCEeCCCCCChhh
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~---p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.+.++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~----~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP----DQ 78 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh----HH
Confidence 4789999999964 579999999999999999999999999999999999999 999999999997631 12
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcC--CCCHHHHHHHHHH-HHHHcCCCcccccCCCCCChHHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKE-NLAAVGLKGVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~-~l~~~gL~~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+++|+||++.+|+.+||+||+.+...... .........++.+ .++.+++.+..++.+.+|||||||||+||||
T Consensus 79 -~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 157 (226)
T cd03234 79 -FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157 (226)
T ss_pred -hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHH
Confidence 23469999999999998999999998653221 1112222234555 8999999988899999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH-HHHHhhcCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl-~~i~~~aDrv~vL~~G 319 (352)
|+. +|++|||||||+|||+.++..+.++|+++.+++ .|+|++||++ +++..+||++++|++|
T Consensus 158 l~~-------~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~----------~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 158 LLW-------DPKVLILDEPTSGLDSFTALNLVSTLSQLARRN----------RIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred HHh-------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 997 599999999999999999999999999997665 5999999999 6899999999999999
Q ss_pred eEEEee
Q 018638 320 KIVWQG 325 (352)
Q Consensus 320 ~iv~~g 325 (352)
++++.|
T Consensus 221 ~i~~~g 226 (226)
T cd03234 221 EIVYSG 226 (226)
T ss_pred EEEecC
Confidence 998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-50 Score=361.79 Aligned_cols=229 Identities=31% Similarity=0.470 Sum_probs=201.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++..++.+|++|||++++||+++|+||||||||||||.|+|-+.|++|++.++|.++..+. .....+ +-+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~-~~~lA~-~ra 78 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWP-PEELAR-HRA 78 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCC-HHHHHH-Hhh
Confidence 689999999999999999999999999999999999999999999999999999999999999987753 333332 578
Q ss_pred EEecCCCC-CCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 171 LVFQSAAL-FDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 171 ~v~Q~~~l-~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
.+||+..+ || .||+|.+.++...+.. ....+..+.++++|.++++..+..|...+|||||||||.+||.|++-|.-.
T Consensus 79 VlpQ~s~laFp-Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 79 VLPQNSSLAFP-FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred hcccCcccccc-eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 99999887 66 6999999998765533 222344556788999999999999999999999999999999999865432
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
. ++++|+||||||+||...+..++++.+++.++| ..|+.|-||++.+..|||||++|++||+++.|+|+
T Consensus 158 ~-~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g----------~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 158 P-SGRWLFLDEPTSALDIAHQHHTLRLARQLAREG----------GAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred C-CCceEEecCCccccchHHHHHHHHHHHHHHhcC----------CcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 2 356999999999999999999999999999887 48999999999999999999999999999999999
Q ss_pred ccccC
Q 018638 329 EFTSS 333 (352)
Q Consensus 329 ~~~~~ 333 (352)
+++++
T Consensus 227 ~vlt~ 231 (259)
T COG4559 227 DVLTD 231 (259)
T ss_pred HhcCH
Confidence 98753
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=422.30 Aligned_cols=274 Identities=28% Similarity=0.418 Sum_probs=213.5
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+....+.+......++.++..+.... ........+.+|+......++....... . .
T Consensus 416 t~G~lva~~~~~~~l~~~l~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~~~~-----------------~--~ 471 (711)
T TIGR00958 416 SSGNLVSFLLYQEQLGEAVRVLSYVY-----SGMMQAVGASEKVFEYLDRKPNIPLTGT-----------------L--A 471 (711)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCCCCCCCC-----------------C--C
Confidence 34445555555666677777766666 6667778888888888776543211000 0 0
Q ss_pred CCCCcceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 85 EDDGDVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
+.+....|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||+++......
T Consensus 472 ~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 472 PLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred CCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHH
Confidence 1111224999999999964 4699999999999999999999999999999999999999999999999998765322
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGG 230 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGG 230 (352)
.. +.+|+||+|++.+|+ .|++|||.++.. ..+ ++++.++++.++++++.++.| .+||||
T Consensus 552 -~l-r~~i~~v~Q~~~lF~-gTIreNI~~g~~---~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 552 -YL-HRQVALVGQEPVLFS-GSVRENIAYGLT---DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred -HH-HhhceEEecCccccc-cCHHHHHhcCCC---CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 22 336999999999997 599999988631 122 234677888888876655543 579999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
||||++|||||++ +|+|||||||||+||+++++.+.+ .. ..++ +|+|+|||+++.+.. |
T Consensus 622 QkQRlalARALl~-------~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~----------~TvIiItHrl~~i~~-a 680 (711)
T TIGR00958 622 QKQRIAIARALVR-------KPRVLILDEATSALDAECEQLLQE-SR--SRAS----------RTVLLIAHRLSTVER-A 680 (711)
T ss_pred HHHHHHHHHHHhc-------CCCEEEEEccccccCHHHHHHHHH-hh--ccCC----------CeEEEEeccHHHHHh-C
Confidence 9999999999997 599999999999999999999888 22 1233 599999999999865 7
Q ss_pred CEEEEEeCCeEEEeecccccccC
Q 018638 311 DRLIFLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~~~ 333 (352)
|+|++|++|+|++.|+.+++.+.
T Consensus 681 D~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 681 DQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred CEEEEEECCEEEEeeCHHHHHhC
Confidence 99999999999999987777643
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=369.29 Aligned_cols=217 Identities=30% Similarity=0.540 Sum_probs=180.2
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~-~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA-DPAWL-RRQV 78 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhc-CHHHH-hhcE
Confidence 478999999963 5799999999999999999999999999999999999999999999999986432 22222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+|+||++.+|+ .||.||+.+... ........+ .+.++++.+ +++...++++.+|||||||||+|||||+
T Consensus 79 ~~~~q~~~~~~-~tv~~nl~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 79 GVVLQENVLFN-RSIRDNIALADP---GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EEEcCCchhcc-chHHHHhhccCC---CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 99999998886 699999987431 112222111 123444555 5566678889999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||++||+.++..+.+.|+++++ | .|||++|||++++. .||++++|++|+++
T Consensus 155 ~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~-~~d~v~~l~~G~i~ 215 (237)
T cd03252 155 H-------NPRILIFDEATSALDYESEHAIMRNMHDICA-G----------RTVIIIAHRLSTVK-NADRIIVMEKGRIV 215 (237)
T ss_pred h-------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-C----------CEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence 7 6999999999999999999999999999864 5 59999999999996 59999999999999
Q ss_pred EeecccccccC
Q 018638 323 WQGMTHEFTSS 333 (352)
Q Consensus 323 ~~g~~~~~~~~ 333 (352)
+.|+++++...
T Consensus 216 ~~~~~~~~~~~ 226 (237)
T cd03252 216 EQGSHDELLAE 226 (237)
T ss_pred EEcCHHHHHhc
Confidence 99988877644
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=409.64 Aligned_cols=258 Identities=25% Similarity=0.422 Sum_probs=206.5
Q ss_pred hhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEEeCC--eeeeEeeeEE
Q 018638 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE--KHILRGVSFK 113 (352)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~y~~--~~~L~~vsl~ 113 (352)
........+.+|+......|+...... . . ........|+++||+++|++ +++|+|+||+
T Consensus 302 ~~~~~~~~s~~ri~~ll~~~~~~~~~~-~------~------------~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~ 362 (574)
T PRK11160 302 QHLGQVIASARRINEITEQKPEVTFPT-T------S------------TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQ 362 (574)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCc-c------c------------CCCCCCCeEEEEEEEEECCCCCCcceecceEE
Confidence 455666778888888877664211000 0 0 00011234999999999964 4699999999
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~ 193 (352)
|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... . +.+|+||+|++.+|+ .|++|||.++..
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~-~-r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~ 439 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAA-L-RQAISVVSQRVHLFS-ATLRDNLLLAAP 439 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHH-H-HhheeEEcccchhhc-ccHHHHhhcCCC
Confidence 9999999999999999999999999999999999999999987653322 2 346999999999997 599999988531
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCccccc----------CCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 194 ENSKMRDEQISELVKENLAAVGLKGVEDR----------LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 194 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~----------~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
..+ ++++.++++.++++++.++ ....||||||||++|||||++ +|++|||||||++
T Consensus 440 ---~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~-------~~~ililDE~ts~ 505 (574)
T PRK11160 440 ---NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH-------DAPLLLLDEPTEG 505 (574)
T ss_pred ---ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEeCCccc
Confidence 122 3457888999999887766 346799999999999999997 5999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 264 LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
||+.+++.+.+.|.++.+ + +|+|+|||+++.+.. ||+|++|++|++++.|+.+++.... +..++++
T Consensus 506 lD~~t~~~i~~~l~~~~~-~----------~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~-g~y~~l~ 571 (574)
T PRK11160 506 LDAETERQILELLAEHAQ-N----------KTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLAQQ-GRYYQLK 571 (574)
T ss_pred CCHHHHHHHHHHHHHHcC-C----------CEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHhcC-cHHHHHH
Confidence 999999999999999864 3 499999999999875 8999999999999999877776443 3444443
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=373.53 Aligned_cols=219 Identities=27% Similarity=0.395 Sum_probs=186.0
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...+.+
T Consensus 5 ~~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~-----~~~~~~ 79 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ-----ALQKNL 79 (272)
T ss_pred ceEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH-----hhccce
Confidence 4699999999995 5789999999999999999999999999999999999999999999999988631 112235
Q ss_pred EEEEecCCCCC--CCCCHHHHHHhhhhhcC---CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 169 IGLVFQSAALF--DSLTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 169 ig~v~Q~~~l~--~~lTV~eni~~~~~~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
++|+||++.++ ...++++|+.++..... ........+++.++++.+||.+..++++.+||||||||++|||||+.
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~ 159 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ 159 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999998652 23478898865421110 01122334567889999999988999999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.++..+.++|++++++| .|||++|||++++..+||+++++ +|++++
T Consensus 160 -------~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g----------~tviivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 160 -------QGQVILLDEPFTGVDVKTEARIISLLRELRDEG----------KTMLVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred -------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 699999999999999999999999999997766 59999999999999999999877 899999
Q ss_pred eecccccc
Q 018638 324 QGMTHEFT 331 (352)
Q Consensus 324 ~g~~~~~~ 331 (352)
.|+++++.
T Consensus 222 ~g~~~~~~ 229 (272)
T PRK15056 222 SGPTETTF 229 (272)
T ss_pred ecCHHhcc
Confidence 99887764
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=366.37 Aligned_cols=216 Identities=32% Similarity=0.530 Sum_probs=182.0
Q ss_pred EEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~--~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++|++++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~-~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT-LASL-RRQI 78 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCC-HHHH-HhhE
Confidence 4789999999765 7999999999999999999999999999999999999999999999999865421 2222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+|+||++.+|+ .||+||+.+.... ....+..+ .+.++++.+ ++....++++.+||||||||++|||||+
T Consensus 79 ~~~~q~~~~~~-~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 79 GLVSQDVFLFN-DTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred EEeCCCCeecc-ccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh
Confidence 99999999887 6999999875421 12222211 234556665 6777788899999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||++||+.++..+.+.|+++.+ + .|||++||+++++.. ||++++|++|+++
T Consensus 155 ~-------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~v~~l~~G~i~ 215 (234)
T cd03251 155 K-------DPPILILDEATSALDTESERLVQAALERLMK-N----------RTTFVIAHRLSTIEN-ADRIVVLEDGKIV 215 (234)
T ss_pred c-------CCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEecCHHHHhh-CCEEEEecCCeEe
Confidence 6 6999999999999999999999999999864 4 599999999999976 9999999999999
Q ss_pred Eeeccccccc
Q 018638 323 WQGMTHEFTS 332 (352)
Q Consensus 323 ~~g~~~~~~~ 332 (352)
+.|+++++..
T Consensus 216 ~~~~~~~~~~ 225 (234)
T cd03251 216 ERGTHEELLA 225 (234)
T ss_pred eeCCHHHHHH
Confidence 9998777643
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=382.78 Aligned_cols=244 Identities=31% Similarity=0.523 Sum_probs=215.9
Q ss_pred CCCcceEEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe
Q 018638 86 DDGDVLIDCRNVYKSFGE-----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~~-----------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~ 154 (352)
.+..+.|+.+||.+.|.- ..++++|||++++||.+||||.||||||||-++|.+|++++ |+|.|+|++
T Consensus 271 ~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~ 349 (534)
T COG4172 271 EDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQD 349 (534)
T ss_pred CCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcc
Confidence 345678999999999941 35899999999999999999999999999999999999887 999999999
Q ss_pred CCCCCChhh-hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcC-CCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCCh
Q 018638 155 RAGLISDEE-ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKG-VEDRLPSELSG 229 (352)
Q Consensus 155 ~~~~~~~~~-~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSG 229 (352)
+..+....- ..+.++-.||||| .|.|.+||.+-|..++..+. ..+..+..+++.++|+.+||+. ..+|+|+++||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 876543321 1244699999998 58999999999999987665 5677888899999999999974 78999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh
Q 018638 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (352)
Q Consensus 230 GqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~ 309 (352)
|||||+|||||++. +|++++||||||+||..-+.++.++|++|.++.. .+++|||||+..+..+
T Consensus 430 GQRQRIAIARAliL-------kP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~---------LsYLFISHDL~VvrAl 493 (534)
T COG4172 430 GQRQRIAIARALIL-------KPELILLDEPTSALDRSVQAQVLDLLRDLQQKHG---------LSYLFISHDLAVVRAL 493 (534)
T ss_pred chhhHHHHHHHHhc-------CCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhC---------CeEEEEeccHHHHHHh
Confidence 99999999999995 7999999999999999999999999999987632 6999999999999999
Q ss_pred cCEEEEEeCCeEEEeecccccc-cCCcHHHHHHhcCCC
Q 018638 310 VDRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 346 (352)
Q Consensus 310 aDrv~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~~~ 346 (352)
||+|+||++|+||++|++++++ .+.++|++.++....
T Consensus 494 ~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~L~~aa~ 531 (534)
T COG4172 494 CHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLAAAF 531 (534)
T ss_pred hceEEEEeCCEEeeeCCHHHHhcCCCcHHHHHHHHhhc
Confidence 9999999999999999999976 578999999886543
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=361.19 Aligned_cols=208 Identities=29% Similarity=0.401 Sum_probs=183.0
Q ss_pred CCCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhh
Q 018638 85 EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
...++++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 5 ~~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~----~- 79 (214)
T PRK13543 5 LHTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG----D- 79 (214)
T ss_pred CCCCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch----h-
Confidence 33445789999999999988899999999999999999999999999999999999999999999999986431 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
.+..++|++|++.+++.+|++||+.+...... . ...+.+.++++.+++.+..++++.+|||||||||+||||++.
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~- 154 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHG-R---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLS- 154 (214)
T ss_pred hhhceEEeecCcccccCCcHHHHHHHHHHhcC-C---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhc-
Confidence 12359999999999988999999987643221 1 123456788999999988999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
+|++|||||||++||+.+++.+.++|+++.++| .|+|++|||++++.++|||+++|+.
T Consensus 155 ------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 ------PAPLWLLDEPYANLDLEGITLVNRMISAHLRGG----------GAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred ------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecChhhhhhhcceEEEEee
Confidence 599999999999999999999999999998776 5999999999999999999999864
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-49 Score=358.21 Aligned_cols=202 Identities=32% Similarity=0.454 Sum_probs=178.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. . .+.+++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~-~~-~-~~~~~~ 77 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ-RD-E-YHQDLL 77 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc-hH-H-hhhheE
Confidence 58999999999988999999999999999999999999999999999999999999999999986532 11 1 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|++|++.+++.+|+.||+.+....+. . ...+++.++++.+|+.+..++++.+||||||||++|||||++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~-~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~------- 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHG-P---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLT------- 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcC-c---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhc-------
Confidence 99999999998999999988653221 1 223567889999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
+|+++||||||++||+.++..+.++|+++++++ .|||++|||++++..+.+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQG----------GMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecChhhhccCCceEEec
Confidence 699999999999999999999999999997665 59999999999999888888877
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-49 Score=366.01 Aligned_cols=221 Identities=28% Similarity=0.424 Sum_probs=184.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
||+++||+++|+++.+|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.|+|+++.... .....+..
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELS-PEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCC-HHHHhhcc
Confidence 589999999999888999999999999999999999999999999999995 699999999998765432 22222346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhh---cCC---CCHHHHHHHHHHHHHHcCCC-cccccCCC-CCChHHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYE---NSK---MRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALARS 240 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~---~~~---~~~~~~~~~v~~~l~~~gL~-~~~~~~~~-~LSGGqrQRvaIArA 240 (352)
++|++|++.+++.+|+.+++.+.... ... .......+.+.++++.+++. +..++.+. +|||||||||+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 99999999988877877776543211 000 11223456678899999994 56777775 899999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh-cCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~-aDrv~vL~~G 319 (352)
|++ +|++|||||||++||+.++..+.++|+++++++ .|||++|||++++..+ ||+|++|++|
T Consensus 160 l~~-------~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~----------~tiii~sH~~~~~~~~~~d~i~~l~~g 222 (248)
T PRK09580 160 AVL-------EPELCILDESDSGLDIDALKIVADGVNSLRDGK----------RSFIIVTHYQRILDYIKPDYVHVLYQG 222 (248)
T ss_pred HHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHhhhCCEEEEEECC
Confidence 997 599999999999999999999999999998765 5999999999999887 8999999999
Q ss_pred eEEEeecccc
Q 018638 320 KIVWQGMTHE 329 (352)
Q Consensus 320 ~iv~~g~~~~ 329 (352)
++++.|+++.
T Consensus 223 ~i~~~g~~~~ 232 (248)
T PRK09580 223 RIVKSGDFTL 232 (248)
T ss_pred eEEEeCCHHH
Confidence 9999996653
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=405.24 Aligned_cols=225 Identities=23% Similarity=0.419 Sum_probs=192.8
Q ss_pred cceEEEEeEEEEeC---CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-CCceEEEECCEeCCCCCChhhh
Q 018638 89 DVLIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 89 ~~~l~~~nls~~y~---~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.++|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++... .....
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~-~~~~~ 335 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIR-NPQQA 335 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCC-CHHHH
Confidence 46899999999994 4679999999999999999999999999999999999998 5999999999987432 22122
Q ss_pred ccceEEEEecCC---CCCCCCCHHHHHHhhhhh-cCC---CCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHH
Q 018638 165 SGLRIGLVFQSA---ALFDSLTVRENVGFLLYE-NSK---MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 165 ~~~~ig~v~Q~~---~l~~~lTV~eni~~~~~~-~~~---~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRva 236 (352)
.+.+|+|+||++ .+++.+||.||+.++... ... ....+..+++.++++.+++. +..++++.+|||||||||+
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~ 415 (506)
T PRK13549 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV 415 (506)
T ss_pred HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence 233699999996 478889999999876421 111 12333456688999999996 5789999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||+|||+.++..++++|++++++| .|||++|||++++.++|||+++|
T Consensus 416 lA~al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tvi~~sHd~~~~~~~~d~v~~l 478 (506)
T PRK13549 416 LAKCLLL-------NPKILILDEPTRGIDVGAKYEIYKLINQLVQQG----------VAIIVISSELPEVLGLSDRVLVM 478 (506)
T ss_pred HHHHHhh-------CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCC----------CEEEEECCCHHHHHHhCCEEEEE
Confidence 9999996 699999999999999999999999999998776 59999999999999999999999
Q ss_pred eCCeEEEeecccccc
Q 018638 317 YEGKIVWQGMTHEFT 331 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~ 331 (352)
++|+++..|+++++.
T Consensus 479 ~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 479 HEGKLKGDLINHNLT 493 (506)
T ss_pred ECCEEEEEeccccCC
Confidence 999999999887763
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=364.15 Aligned_cols=217 Identities=30% Similarity=0.499 Sum_probs=185.0
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC----CceEEEECCEeCCCCCChhhhccceEEEEecCCC--CC
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP----DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA--LF 179 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p----~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~--l~ 179 (352)
+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... ...+.+|+|++|++. ++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~----~~~~~~i~~~~q~~~~~~~ 76 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL----SIRGRHIATIMQNPRTAFN 76 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh----hhhhheeEEEecCchhhcC
Confidence 57999999999999999999999999999999999999 899999999986432 122236999999984 55
Q ss_pred CCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---cccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEE
Q 018638 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (352)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~---~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llL 256 (352)
+.+|+++|+.+...... ....+..+++.++++.+++. +..++.+.+|||||||||+|||||+. +|++||
T Consensus 77 ~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~-------~p~vll 148 (230)
T TIGR02770 77 PLFTMGNHAIETLRSLG-KLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL-------EPPFLI 148 (230)
T ss_pred cccCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc-------CCCEEE
Confidence 67899999977643222 22334456788999999997 57899999999999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc-CC
Q 018638 257 YDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS-SS 334 (352)
Q Consensus 257 LDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~-~~ 334 (352)
|||||+|||+.++..+.+.|++++++ + .|||++||+++++..+|||+++|++|++++.|+++++.. +.
T Consensus 149 LDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 218 (230)
T TIGR02770 149 ADEPTTDLDVVNQARVLKLLRELRQLFG----------TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPK 218 (230)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcC
Confidence 99999999999999999999999764 5 599999999999999999999999999999998888753 34
Q ss_pred cHHHHHHhcC
Q 018638 335 NPIVQQFASG 344 (352)
Q Consensus 335 ~~~~~~~~~~ 344 (352)
....+.++.+
T Consensus 219 ~~~~~~~~~~ 228 (230)
T TIGR02770 219 HETTRKLLSA 228 (230)
T ss_pred CHHHHHHHHh
Confidence 5666667654
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=404.38 Aligned_cols=224 Identities=33% Similarity=0.520 Sum_probs=189.8
Q ss_pred CcceEEEEeEEEEeC-----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC-CEe---CCCC
Q 018638 88 GDVLIDCRNVYKSFG-----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR-GRK---RAGL 158 (352)
Q Consensus 88 ~~~~l~~~nls~~y~-----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~-G~~---~~~~ 158 (352)
..++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++ |.+ +...
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 346899999999994 2579999999999999999999999999999999999999999999996 642 2111
Q ss_pred CC-hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-----ccccCCCCCChHHH
Q 018638 159 IS-DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-----VEDRLPSELSGGMK 232 (352)
Q Consensus 159 ~~-~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-----~~~~~~~~LSGGqr 232 (352)
.. .....+.+|+|+||++.+++.+||+||+.+.+.. ....+...+++.++++.+||.+ +.++++.+||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL--ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 10 0111133699999999999999999999875421 1233334566889999999974 67899999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|||+|||||+. +|++|||||||++||+.+++.++++|++++++ | .|||+||||++++.++||
T Consensus 434 qrv~laral~~-------~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vsHd~~~~~~~~d 496 (520)
T TIGR03269 434 HRVALAQVLIK-------EPRIVILDEPTGTMDPITKVDVTHSILKAREEME----------QTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred HHHHHHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC----------cEEEEEeCCHHHHHHhCC
Confidence 99999999996 69999999999999999999999999999765 5 599999999999999999
Q ss_pred EEEEEeCCeEEEeeccccc
Q 018638 312 RLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~ 330 (352)
|+++|++|++++.|++.++
T Consensus 497 ~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 497 RAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred EEEEEECCEEEEECCHHHH
Confidence 9999999999999977665
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=354.04 Aligned_cols=213 Identities=34% Similarity=0.580 Sum_probs=193.7
Q ss_pred ceEEEEeEEEEeCCee--eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~--~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+++.+++++.+|+++. +|+|||++|.+||.++++|||||||||||++++|+.+|+.|+|.+||+.+..- ..
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP--ga----- 74 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP--GA----- 74 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC--Cc-----
Confidence 3578899999999877 99999999999999999999999999999999999999999999999987642 11
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
.-|.|||+..|+|.+||.+|++|++.. .+.++.+..+++.+.+..+||.+..++++.+|||||||||.|||||+.
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l-~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~---- 149 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQL-RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAV---- 149 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhc----
Confidence 248999999999999999999999854 457788888889999999999999999999999999999999999985
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe--CCeEEEe
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY--EGKIVWQ 324 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~--~G~iv~~ 324 (352)
+|++|+||||+++||.-++++++++|-++.++ | +.+++||||++++.-+++|++||+ .|+|++.
T Consensus 150 ---eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg----------k~~lliTH~ieEAlflatrLvvlsp~pgRvv~~ 216 (259)
T COG4525 150 ---EPQLLLLDEPFGALDALTREQMQELLLDLWQETG----------KQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216 (259)
T ss_pred ---CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC----------CeEEEEeccHHHHHhhhheeEEecCCCceeeEe
Confidence 79999999999999999999999999998765 4 489999999999999999999998 5789887
Q ss_pred ecc
Q 018638 325 GMT 327 (352)
Q Consensus 325 g~~ 327 (352)
-++
T Consensus 217 ~~~ 219 (259)
T COG4525 217 LPL 219 (259)
T ss_pred cCC
Confidence 643
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=364.60 Aligned_cols=200 Identities=35% Similarity=0.561 Sum_probs=176.5
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . +.+|+||++.+|+.+||+|
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~------~~~~v~q~~~l~~~~tv~e 73 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-P------DRMVVFQNYSLLPWLTVRE 73 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-h------hheEEecCcccCCCCCHHH
Confidence 57999999999999999999999999999999999999999999999864321 1 2589999999999899999
Q ss_pred HHHhhhhh-cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCC
Q 018638 187 NVGFLLYE-NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (352)
Q Consensus 187 ni~~~~~~-~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD 265 (352)
|+.++... .......+..+++.++++.+|+.+..++++.+|||||||||+|||||+. +|++|||||||+|||
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-------~p~lllLDEPt~gLD 146 (230)
T TIGR01184 74 NIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSI-------RPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHc-------CCCEEEEcCCCcCCC
Confidence 99886421 1223344555668899999999989999999999999999999999997 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 266 PIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 266 ~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+.++..+.++|++++++ | .|||+||||++++..+||||++|++|++++.|+..++
T Consensus 147 ~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 147 ALTRGNLQEELMQIWEEHR----------VTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999999765 5 5999999999999999999999999999999876554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=363.19 Aligned_cols=205 Identities=35% Similarity=0.548 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|+++|+++.... .... +.++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i 80 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD-PADL-RRNI 80 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCC-HHHH-HhhE
Confidence 789999999975 56999999999999999999999999999999999999999999999999864321 2222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIA 238 (352)
+|+||++.+|+ .|+.||+.+.... .. .+.+.++++.+++.+..++.| .+||||||||++||
T Consensus 81 ~~~~q~~~~~~-~tv~e~l~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la 152 (220)
T cd03245 81 GYVPQDVTLFY-GTLRDNITLGAPL---AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152 (220)
T ss_pred EEeCCCCcccc-chHHHHhhcCCCC---CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHH
Confidence 99999999887 6999999774311 11 234567888888887777655 69999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||+|||+.++..+.++|++++++ .|||++|||++.+ ++||++++|++
T Consensus 153 ~al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sH~~~~~-~~~d~v~~l~~ 213 (220)
T cd03245 153 RALLN-------DPPILLLDEPTSAMDMNSEERLKERLRQLLGD-----------KTLIIITHRPSLL-DLVDRIIVMDS 213 (220)
T ss_pred HHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-----------CEEEEEeCCHHHH-HhCCEEEEEeC
Confidence 99997 69999999999999999999999999998653 3999999999987 69999999999
Q ss_pred CeEEEee
Q 018638 319 GKIVWQG 325 (352)
Q Consensus 319 G~iv~~g 325 (352)
|++++.|
T Consensus 214 g~i~~~~ 220 (220)
T cd03245 214 GRIVADG 220 (220)
T ss_pred CeEeecC
Confidence 9997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=404.18 Aligned_cols=222 Identities=32% Similarity=0.479 Sum_probs=189.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCceEEEECC-----------------
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRG----------------- 152 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~G~I~i~G----------------- 152 (352)
|+++||+++|+++.+|+|+||+|.+||+++|+||||||||||+|+|+|++ +|++|+|+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999999888999999999999999999999999999999999997 79999999972
Q ss_pred ------EeCCC----CC--Chh--hhccceEEEEecC-CCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Q 018638 153 ------RKRAG----LI--SDE--EISGLRIGLVFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217 (352)
Q Consensus 153 ------~~~~~----~~--~~~--~~~~~~ig~v~Q~-~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~ 217 (352)
.++.. .. ... ...+.+++|+||+ +.+|+.+||+||+.+++... +...++..+++.++++.+||+
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-GYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCh
Confidence 22110 00 010 1113369999997 67888899999999875332 234455567789999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEE
Q 018638 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASY 296 (352)
Q Consensus 218 ~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tv 296 (352)
+..++++.+|||||||||+|||||+. +|++|||||||++||+.++..++++|+++.++ | .||
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tv 222 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAK-------EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG----------ISM 222 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhc-------CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC----------cEE
Confidence 88999999999999999999999996 69999999999999999999999999999664 5 599
Q ss_pred EEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 297 VVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 297 IivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
|+||||++.+.++||||++|++|+++..|+++++.
T Consensus 223 iivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 223 VLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVV 257 (520)
T ss_pred EEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHH
Confidence 99999999999999999999999999988776653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-49 Score=360.52 Aligned_cols=208 Identities=32% Similarity=0.468 Sum_probs=176.6
Q ss_pred eEEEEeEEEEeCC-------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC--CE--eCCCCC
Q 018638 91 LIDCRNVYKSFGE-------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR--GR--KRAGLI 159 (352)
Q Consensus 91 ~l~~~nls~~y~~-------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~--G~--~~~~~~ 159 (352)
||+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++ |+ ++....
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5899999999962 479999999999999999999999999999999999999999999998 42 332211
Q ss_pred Chh--hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHH
Q 018638 160 SDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 160 ~~~--~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRva 236 (352)
... ...+.+++|+||++.+++.+||+||+.+.+... +.......+++.++++.+|+.+ ..++++.+||||||||++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 111 112236999999999999999999998764322 2334445567888999999976 458899999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||++||+.++..+.++|++++++| .|||+|||+++++..+|||++.+
T Consensus 160 laral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 160 IARGFIA-------DYPILLLDEPTASLDAANRQVVVELIAEAKARG----------AALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcceeEec
Confidence 9999997 699999999999999999999999999997766 59999999999999999999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=407.75 Aligned_cols=275 Identities=23% Similarity=0.394 Sum_probs=206.8
Q ss_pred cchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q 018638 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (352)
...+.+...+..++.++..+.+.. ..........+++......|+...... . . . ...
T Consensus 273 g~~~a~~~l~~~~~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~~~~~~~~~---~---~----------~--~~~ 329 (588)
T PRK13657 273 GEVVAFVGFATLLIGRLDQVVAFI-----NQVFMAAPKLEEFFEVEDAVPDVRDPP---G---A----------I--DLG 329 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCcccCCCC---C---C----------C--CcC
Confidence 333344444455566666555544 344555666666666655442111000 0 0 0 000
Q ss_pred CCcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 87 DGDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
.....|+++||+++|++ +.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|+++|+++..... ...
T Consensus 330 ~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~-~~~- 407 (588)
T PRK13657 330 RVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR-ASL- 407 (588)
T ss_pred CCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCH-HHH-
Confidence 11124999999999975 579999999999999999999999999999999999999999999999999876532 222
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKR 234 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGqrQR 234 (352)
+.+|+||||++.+|+ .|++|||.++. ...++ +++.++++.++++++.++. ...||||||||
T Consensus 408 r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~---~~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QR 479 (588)
T PRK13657 408 RRNIAVVFQDAGLFN-RSIEDNIRVGR---PDATD----EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR 479 (588)
T ss_pred HhheEEEecCccccc-ccHHHHHhcCC---CCCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHH
Confidence 346999999999997 59999998752 11233 3356667777766544433 35799999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
++|||||++ +|+++|||||||+||+.++..+++.|.++.+ + +|+|+|||+++.+. .||+|+
T Consensus 480 ialARall~-------~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~----------~tvIiitHr~~~~~-~~D~ii 540 (588)
T PRK13657 480 LAIARALLK-------DPPILILDEATSALDVETEAKVKAALDELMK-G----------RTTFIIAHRLSTVR-NADRIL 540 (588)
T ss_pred HHHHHHHhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-C----------CEEEEEEecHHHHH-hCCEEE
Confidence 999999997 5999999999999999999999999988754 3 49999999999875 589999
Q ss_pred EEeCCeEEEeecccccccC
Q 018638 315 FLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 315 vL~~G~iv~~g~~~~~~~~ 333 (352)
+|++|++++.|+.+++...
T Consensus 541 ~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 541 VFDNGRVVESGSFDELVAR 559 (588)
T ss_pred EEECCEEEEeCCHHHHHHC
Confidence 9999999999987776544
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=360.66 Aligned_cols=232 Identities=31% Similarity=0.470 Sum_probs=208.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+|+|+++.+|+++|++|++|.+++|||||||||||||.++++|+++|+|+|+++|.++....+.. ++ ++++
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~-LA-k~lS 78 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE-LA-KKLS 78 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHH-HH-HHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999998765443 32 2689
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
.+-|+..+...+||+|-+.|+.+++.. ....+-+..+.++++.++|+++.+|+..+||||||||..||+.|++
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQ------ 152 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQ------ 152 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeec------
Confidence 999999888889999999999876543 2334556778999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+.+.++||||.++||......+++.|++++++-+ +|||+|-||++++..++|+|+-|++|+++.+|++++
T Consensus 153 -dTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~---------KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~e 222 (252)
T COG4604 153 -DTDYVLLDEPLNNLDMKHSVQIMKILRRLADELG---------KTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222 (252)
T ss_pred -cCcEEEecCcccccchHHHHHHHHHHHHHHHHhC---------CeEEEEEecccHHHhhhhheeeecCCEEEecCCHHH
Confidence 4999999999999999999999999999988721 599999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHh
Q 018638 330 FTSSSNPIVQQFA 342 (352)
Q Consensus 330 ~~~~~~~~~~~~~ 342 (352)
+.++ +.+.+.+
T Consensus 223 ii~~--~~L~eiy 233 (252)
T COG4604 223 IIQP--EILSEIY 233 (252)
T ss_pred hcCH--HHHHHHh
Confidence 8753 4455555
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=406.31 Aligned_cols=284 Identities=25% Similarity=0.402 Sum_probs=222.2
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+......+...+..++.|+..+.+.. ......+...+|+...+..++...... . .
T Consensus 269 t~g~l~a~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~-~-------------------~ 323 (571)
T TIGR02203 269 TAGDFTAFITAMIALIRPLKSLTNVN-----APMQRGLAAAESLFTLLDSPPEKDTGT-R-------------------A 323 (571)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCCCCC-C-------------------C
Confidence 34455555556666778887777776 667777888888888877654321100 0 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
.......|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ..
T Consensus 324 ~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~-~~ 402 (571)
T TIGR02203 324 IERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT-LA 402 (571)
T ss_pred CCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC-HH
Confidence 0011123999999999964 56999999999999999999999999999999999999999999999999986543 33
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGq 231 (352)
+. +.+|+|+||++.+|+ .|++|||.++.. ...+ ++++.++++.+|++++.++.| ..|||||
T Consensus 403 ~~-~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~--~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 403 SL-RRQVALVSQDVVLFN-DTIANNIAYGRT--EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred HH-HhhceEEccCccccc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 32 346999999999997 599999987521 0122 344677888888877665554 4699999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|||++||||+++ +|+++||||||++||+.+++.+++.|.++.++ +|+|+|||+.+.+. .||
T Consensus 475 rQRiaLARall~-------~~~illLDEpts~LD~~~~~~i~~~L~~~~~~-----------~tiIiitH~~~~~~-~~D 535 (571)
T TIGR02203 475 RQRLAIARALLK-------DAPILILDEATSALDNESERLVQAALERLMQG-----------RTTLVIAHRLSTIE-KAD 535 (571)
T ss_pred HHHHHHHHHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHHhCC-----------CEEEEEehhhHHHH-hCC
Confidence 999999999997 59999999999999999999999999987543 49999999998865 589
Q ss_pred EEEEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 312 RLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
+|++|++|++++.|+.+++... ++..+++.
T Consensus 536 ~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~ 565 (571)
T TIGR02203 536 RIVVMDDGRIVERGTHNELLAR-NGLYAQLH 565 (571)
T ss_pred EEEEEeCCEEEeeCCHHHHHHc-CCHHHHHH
Confidence 9999999999999987777643 34445444
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=366.83 Aligned_cols=221 Identities=27% Similarity=0.380 Sum_probs=184.6
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEE
Q 018638 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (352)
Q Consensus 93 ~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v 172 (352)
+++||++. .+|+||||+|++||+++|+||||||||||+++|+|+++ .+|+|+++|+++.... .... +..++|+
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~-~~~~-~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWS-AAEL-ARHRAYL 74 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCC-HHHH-hhheEEe
Confidence 57888875 38999999999999999999999999999999999986 5999999999875432 2222 2359999
Q ss_pred ecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
||++.+++.+|+++|+.+.... .....+..+++.++++.+|+.+..++++.+||||||||++|||||+.+++....+|
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPD--KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred cccCccCCCccHHHHHHhcCcc--CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 9998887789999999875321 12233445678899999999988999999999999999999999984000000147
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
++|||||||+|||+.++..+.++|+++++++ .|||++||+++++.++||++++|++|++++.|+++++..
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~----------~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQG----------IAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 9999999999999999999999999997665 599999999999999999999999999999998777653
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=364.12 Aligned_cols=215 Identities=29% Similarity=0.553 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ... .+.+++
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i~ 80 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS-RKS-LRSMIG 80 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcC-HHH-HhhhEE
Confidence 889999999975 57999999999999999999999999999999999999999999999998865321 222 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
|+||++.+|+. |++||+.+.... ....+..+ .+.++++.+ ++....++.+.+|||||||||+|||||+.
T Consensus 81 ~~~q~~~~~~~-tv~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 81 VVLQDTFLFSG-TIMENIRLGRPN---ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred EecCCchhhhh-HHHHHHhccCCC---CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999998875 999999875311 11121111 112233333 44445566789999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||+|||+.++..+++.|+++. ++ .|||+|||+++++.. ||++++|++|++++
T Consensus 157 -------~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~----------~tii~~sh~~~~~~~-~d~i~~l~~g~~~~ 217 (229)
T cd03254 157 -------DPKILILDEATSNIDTETEKLIQEALEKLM-KG----------RTSIIIAHRLSTIKN-ADKILVLDDGKIIE 217 (229)
T ss_pred -------CCCEEEEeCccccCCHHHHHHHHHHHHHhc-CC----------CEEEEEecCHHHHhh-CCEEEEEeCCeEEE
Confidence 699999999999999999999999999985 45 599999999999865 99999999999999
Q ss_pred eecccccc
Q 018638 324 QGMTHEFT 331 (352)
Q Consensus 324 ~g~~~~~~ 331 (352)
.|+.+++.
T Consensus 218 ~~~~~~~~ 225 (229)
T cd03254 218 EGTHDELL 225 (229)
T ss_pred eCCHHHHH
Confidence 88766653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=366.55 Aligned_cols=203 Identities=32% Similarity=0.530 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-------------~~i 69 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-------------LRI 69 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-------------cCE
Confidence 4799999999999888999999999999999999999999999999999999999999999862 159
Q ss_pred EEEecCCCCCCC--CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 170 GLVFQSAALFDS--LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 170 g~v~Q~~~l~~~--lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|+||++.+++. .|+.+|+.+. .... .+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~---- 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR----PGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLN---- 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc----cccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhc----
Confidence 999999987765 3788876542 1111 2346789999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..++++|++++++ + .|||++|||++++..+||+|++|++ ++++.|+
T Consensus 138 ---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~ 203 (251)
T PRK09544 138 ---RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD----------CAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGT 203 (251)
T ss_pred ---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEECC-ceEeeCC
Confidence 69999999999999999999999999999765 5 5999999999999999999999965 7999998
Q ss_pred ccccc
Q 018638 327 THEFT 331 (352)
Q Consensus 327 ~~~~~ 331 (352)
++++.
T Consensus 204 ~~~~~ 208 (251)
T PRK09544 204 PEVVS 208 (251)
T ss_pred HHHHh
Confidence 87765
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=413.91 Aligned_cols=285 Identities=24% Similarity=0.383 Sum_probs=223.1
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCC
Q 018638 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
++....+.+..++..++.|+..+++.. ..........+|+......|.........
T Consensus 392 it~G~lia~~~l~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~e~~~~~~~------------------- 447 (694)
T TIGR01846 392 LSPGQLVAFNMLAGRVTQPVLRLAQLW-----QDFQQTGIALERLGDILNSPTEPRSAGLA------------------- 447 (694)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCccCCCCC-------------------
Confidence 344555666666677788888877777 67788889999999988776432110000
Q ss_pred CCCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 84 PEDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
........|+++||+++|++ +.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|++||+++......
T Consensus 448 ~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 448 ALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA 527 (694)
T ss_pred CCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHH
Confidence 00011124999999999953 5699999999999999999999999999999999999999999999999998765333
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccccc-----------CCCCCChH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR-----------LPSELSGG 230 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSGG 230 (352)
.. +.+|+||+|++.+|+ .|++|||.++. ...+. +.+.++++.++++++.++ ....||||
T Consensus 528 -~~-r~~i~~v~q~~~lf~-~ti~eNi~~~~---~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 528 -WL-RRQMGVVLQENVLFS-RSIRDNIALCN---PGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred -HH-HHhCeEEccCCeehh-hhHHHHHhcCC---CCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 22 336999999999997 59999998742 11233 335566666666554433 34689999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
||||++|||||++ +|++|||||||++||+.+++.+.+.|+++. ++ .|+|+|||+++.+.. |
T Consensus 598 q~qri~lARall~-------~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~----------~t~i~itH~~~~~~~-~ 658 (694)
T TIGR01846 598 QRQRIAIARALVG-------NPRILIFDEATSALDYESEALIMRNMREIC-RG----------RTVIIIAHRLSTVRA-C 658 (694)
T ss_pred HHHHHHHHHHHHh-------CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CC----------CEEEEEeCChHHHHh-C
Confidence 9999999999997 599999999999999999999999999985 33 599999999999875 8
Q ss_pred CEEEEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 311 DRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|+|++|++|++++.|+.+++.... ...++++
T Consensus 659 d~ii~l~~G~i~~~g~~~~l~~~~-~~y~~l~ 689 (694)
T TIGR01846 659 DRIIVLEKGQIAESGRHEELLALQ-GLYARLW 689 (694)
T ss_pred CEEEEEeCCEEEEeCCHHHHHHcC-ChHHHHH
Confidence 999999999999999877776543 3444444
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=399.15 Aligned_cols=277 Identities=28% Similarity=0.428 Sum_probs=214.0
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+....+.+...+..++.|+..+.... ........+.+|+......|+...... .. +
T Consensus 256 t~g~l~a~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~-----------------~~--~ 311 (544)
T TIGR01842 256 TPGMMIAGSILVGRALAPIDGAIGGW-----KQFSGARQAYKRLNELLANYPSRDPAM-----------------PL--P 311 (544)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCccccCCC-----------------CC--C
Confidence 34455555555666677887776666 667888888999988887654321000 00 1
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
. ....|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|+++......
T Consensus 312 ~--~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~- 388 (544)
T TIGR01842 312 E--PEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE- 388 (544)
T ss_pred C--CCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHH-
Confidence 1 1124999999999964 5799999999999999999999999999999999999999999999999988654322
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHH-----HHHHHHHc--CCCcccccCCCCCChHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL-----VKENLAAV--GLKGVEDRLPSELSGGMKKRV 235 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~~~~~~LSGGqrQRv 235 (352)
. .+.+++||||++.+|+. |++||+.++. ...+.++..+. +.+.++.+ |++....+....||||||||+
T Consensus 389 ~-~~~~i~~v~q~~~lf~~-ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl 463 (544)
T TIGR01842 389 T-FGKHIGYLPQDVELFPG-TVAENIARFG---ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRI 463 (544)
T ss_pred H-HhhheEEecCCcccccc-cHHHHHhccC---CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHH
Confidence 2 23469999999999985 9999998532 11233332221 12333344 444455556789999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
+|||||++ +|++|||||||++||+.++..+.+.|+++..++ .|+|++||+++.+. .||+|++
T Consensus 464 ~lARall~-------~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~----------~tvi~ith~~~~~~-~~d~i~~ 525 (544)
T TIGR01842 464 ALARALYG-------DPKLVVLDEPNSNLDEEGEQALANAIKALKARG----------ITVVVITHRPSLLG-CVDKILV 525 (544)
T ss_pred HHHHHHhc-------CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCC----------CEEEEEeCCHHHHH-hCCEEEE
Confidence 99999997 599999999999999999999999999987555 59999999999765 6899999
Q ss_pred EeCCeEEEeecccccc
Q 018638 316 LYEGKIVWQGMTHEFT 331 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~ 331 (352)
|++|++++.|+.+++.
T Consensus 526 l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 526 LQDGRIARFGERDEVL 541 (544)
T ss_pred EECCEEEeeCCHHHHh
Confidence 9999999999766653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=360.38 Aligned_cols=217 Identities=33% Similarity=0.552 Sum_probs=178.8
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +..++
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~-~~~~-~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVT-LDSL-RRAIG 78 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCC-HHHH-HhhEE
Confidence 47899999996 567999999999999999999999999999999999999999999999999875432 1122 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
|+||++.+|+ .||+||+.++... ....+..+ .+.+.++.+ +++...++.+.+|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 79 VVPQDTVLFN-DTIGYNIRYGRPD---ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred EECCCChhhc-chHHHHHhhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999886 6999999875321 12222111 122333333 45555677789999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.++..+.++|.++++ | .|||++||+++.+.. |||+++|++|++++
T Consensus 155 -------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sh~~~~~~~-~d~~~~l~~g~i~~ 215 (236)
T cd03253 155 -------NPPILLLDEATSALDTHTEREIQAALRDVSK-G----------RTTIVIAHRLSTIVN-ADKIIVLKDGRIVE 215 (236)
T ss_pred -------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-C----------CEEEEEcCCHHHHHh-CCEEEEEECCEEEe
Confidence 6999999999999999999999999999876 5 599999999999975 99999999999999
Q ss_pred eecccccccC
Q 018638 324 QGMTHEFTSS 333 (352)
Q Consensus 324 ~g~~~~~~~~ 333 (352)
.|+.+++...
T Consensus 216 ~~~~~~~~~~ 225 (236)
T cd03253 216 RGTHEELLAK 225 (236)
T ss_pred eCCHHHHhhc
Confidence 9987776543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=400.43 Aligned_cols=221 Identities=21% Similarity=0.382 Sum_probs=188.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||++.|+ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 263 ~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~-~~~~~~~~~ 339 (510)
T PRK09700 263 ETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPR-SPLDAVKKG 339 (510)
T ss_pred CcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCC-CHHHHHHCC
Confidence 45899999999874 389999999999999999999999999999999999999999999999987432 121112336
Q ss_pred EEEEecC---CCCCCCCCHHHHHHhhhhhc----C---C-CCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHH
Q 018638 169 IGLVFQS---AALFDSLTVRENVGFLLYEN----S---K-MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 169 ig~v~Q~---~~l~~~lTV~eni~~~~~~~----~---~-~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRva 236 (352)
|||+||+ +.+++.+||+||+.++.... . + .......+++.++++.+|+. +..++++.+|||||||||+
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 419 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL 419 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH
Confidence 9999998 46888899999998753210 0 1 12223345678899999997 7889999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||+|||+.++..++++|++++++| .|||+||||++++..+|||+++|
T Consensus 420 lAral~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tvi~vsHd~~~~~~~~d~i~~l 482 (510)
T PRK09700 420 ISKWLCC-------CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG----------KVILMVSSELPEIITVCDRIAVF 482 (510)
T ss_pred HHHHHhc-------CCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHhhCCEEEEE
Confidence 9999997 699999999999999999999999999998766 59999999999999999999999
Q ss_pred eCCeEEEeecccc
Q 018638 317 YEGKIVWQGMTHE 329 (352)
Q Consensus 317 ~~G~iv~~g~~~~ 329 (352)
++|++++.++..+
T Consensus 483 ~~G~i~~~~~~~~ 495 (510)
T PRK09700 483 CEGRLTQILTNRD 495 (510)
T ss_pred ECCEEEEEecCcc
Confidence 9999999886634
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-49 Score=364.38 Aligned_cols=216 Identities=33% Similarity=0.541 Sum_probs=178.1
Q ss_pred EEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 92 IDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 92 l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ... .+.+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN-LRW-LRSQ 78 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcC-HHH-HHhh
Confidence 478999999964 46999999999999999999999999999999999999999999999999864321 222 1236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
++|+||++.+++ .||+||+.++... ...++..+ .+.++++.+ ++....++.+.+|||||||||+|||||
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 79 IGLVSQEPVLFD-GTIAENIRYGKPD---ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EEEECCchhhhh-hhHHHHhhccCCC---CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 999999998887 6999999875321 11222111 122333333 555567788999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||+|||+.++..+.+.|++++ +| .|||++||+++++. +||++++|++|++
T Consensus 155 ~~-------~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g----------~~vi~~sh~~~~~~-~~d~v~~l~~G~i 215 (238)
T cd03249 155 LR-------NPKILLLDEATSALDAESEKLVQEALDRAM-KG----------RTTIVIAHRLSTIR-NADLIAVLQNGQV 215 (238)
T ss_pred hc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhc-CC----------CEEEEEeCCHHHHh-hCCEEEEEECCEE
Confidence 96 699999999999999999999999999986 55 59999999999997 7999999999999
Q ss_pred EEeeccccccc
Q 018638 322 VWQGMTHEFTS 332 (352)
Q Consensus 322 v~~g~~~~~~~ 332 (352)
++.|+.+++..
T Consensus 216 ~~~~~~~~~~~ 226 (238)
T cd03249 216 VEQGTHDELMA 226 (238)
T ss_pred EEeCCHHHHhh
Confidence 99997776643
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=398.90 Aligned_cols=224 Identities=23% Similarity=0.386 Sum_probs=191.0
Q ss_pred cceEEEEeEEEEe---CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECCEeCCCCCChhhh
Q 018638 89 DVLIDCRNVYKSF---GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 89 ~~~l~~~nls~~y---~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.++|+++|++++| +++.+|+++||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... .....
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~-~~~~~ 333 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR-NPAQA 333 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC-CHHHH
Confidence 4589999999999 346799999999999999999999999999999999999995 899999999987432 12122
Q ss_pred ccceEEEEecCC---CCCCCCCHHHHHHhhhhh-cC---CCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHH
Q 018638 165 SGLRIGLVFQSA---ALFDSLTVRENVGFLLYE-NS---KMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 165 ~~~~ig~v~Q~~---~l~~~lTV~eni~~~~~~-~~---~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRva 236 (352)
.+.+|||+||++ .+++.+||++|+.++... .. ........+++.++++++++.. ..++++.+|||||||||+
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence 234699999996 588889999999875321 11 1223334566889999999974 689999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||+|||+.++..++++|++++++| .|||+||||++++.++|||+++|
T Consensus 414 la~al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tviivsHd~~~~~~~~d~v~~l 476 (500)
T TIGR02633 414 LAKMLLT-------NPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG----------VAIIVVSSELAEVLGLSDRVLVI 476 (500)
T ss_pred HHHHHhh-------CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEE
Confidence 9999997 699999999999999999999999999998776 59999999999999999999999
Q ss_pred eCCeEEEeeccccc
Q 018638 317 YEGKIVWQGMTHEF 330 (352)
Q Consensus 317 ~~G~iv~~g~~~~~ 330 (352)
++|+++..++.+++
T Consensus 477 ~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 477 GEGKLKGDFVNHAL 490 (500)
T ss_pred ECCEEEEEEccccC
Confidence 99999988866543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-49 Score=393.99 Aligned_cols=223 Identities=33% Similarity=0.536 Sum_probs=192.3
Q ss_pred eEEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~--~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++++||+|+|++. ++|+|+||++++||.+||+|+||||||||+.+|+|.++|++|+|.++|.++..+..... +..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~--~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL--RET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhH--HHH
Confidence 69999999999875 49999999999999999999999999999999999999999999999999876643322 235
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaI 237 (352)
|++++|.+.+|. -|+++|+.+.. .+.+ .+.+.++++++||+++....| ..||||||||++|
T Consensus 414 i~vl~Qr~hlF~-~Tlr~NL~lA~---~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAl 485 (573)
T COG4987 414 ISVLTQRVHLFS-GTLRDNLRLAN---PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL 485 (573)
T ss_pred HhhhccchHHHH-HHHHHHHhhcC---CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHH
Confidence 999999999997 49999998842 2223 345778899999987666554 6899999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||+|++| .+++||||||.|||+.++++++++|.+-.+ | +|+|||||++..++. ||||+||+
T Consensus 486 AR~LL~d-------apl~lLDEPTegLD~~TE~~vL~ll~~~~~-~----------kTll~vTHrL~~le~-~drIivl~ 546 (573)
T COG4987 486 ARALLHD-------APLWLLDEPTEGLDPITERQVLALLFEHAE-G----------KTLLMVTHRLRGLER-MDRIIVLD 546 (573)
T ss_pred HHHHHcC-------CCeEEecCCcccCChhhHHHHHHHHHHHhc-C----------CeEEEEecccccHhh-cCEEEEEE
Confidence 9999984 999999999999999999999999988655 3 499999999999886 59999999
Q ss_pred CCeEEEeecccccccCCcHHHHHHhc
Q 018638 318 EGKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
+|+++++|..++++. .++...+++.
T Consensus 547 ~Gkiie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 547 NGKIIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred CCeeeecCCHHhhhc-cccHHHHHhc
Confidence 999999998888775 4566666653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=399.22 Aligned_cols=214 Identities=21% Similarity=0.276 Sum_probs=186.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... ..... +.+++
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~-~~~~~-~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRL-SFEQL-QKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccC-CHHHH-HHHhc
Confidence 69999999999988899999999999999999999999999999999999999999999999765432 22222 23599
Q ss_pred EEecCCCC--C-C-----CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 171 LVFQSAAL--F-D-----SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 171 ~v~Q~~~l--~-~-----~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
|+||++.+ + + .+||++|+.+. .+..+++.++++.+||.+..++++.+|||||||||+|||||+
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 151 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALM 151 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99998643 1 1 46888887542 122456788999999998899999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||+|||+.++..+.++|++++++| .|||+||||++.+.++||+|++|++|+++
T Consensus 152 ~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 214 (490)
T PRK10938 152 S-------EPDLLILDEPFDGLDVASRQQLAELLASLHQSG----------ITLVLVLNRFDEIPDFVQFAGVLADCTLA 214 (490)
T ss_pred c-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC----------CeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 7 699999999999999999999999999998766 59999999999999999999999999999
Q ss_pred Eeeccccccc
Q 018638 323 WQGMTHEFTS 332 (352)
Q Consensus 323 ~~g~~~~~~~ 332 (352)
..|+++++..
T Consensus 215 ~~~~~~~~~~ 224 (490)
T PRK10938 215 ETGEREEILQ 224 (490)
T ss_pred EeCCHHHHhc
Confidence 9998777643
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=359.47 Aligned_cols=202 Identities=33% Similarity=0.472 Sum_probs=177.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
+.++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-------------- 88 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-------------- 88 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------------
Confidence 789999999999999999999999999999999999999999999999999999999999986421
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
..+...+++.+||+||+.+..... .....+..+++.++++.+++.+..++.+.+||||||||++|||||+. +
T Consensus 89 ~~~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~-------~ 160 (224)
T cd03220 89 LGLGGGFNPELTGRENIYLNGRLL-GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATAL-------E 160 (224)
T ss_pred hcccccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 011223456789999998865322 23344455667889999999999999999999999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||++||+.++..+.+.|+++++++ .|||++||+++++..+||++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQG----------KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999997765 59999999999999999999999999998764
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=372.30 Aligned_cols=220 Identities=27% Similarity=0.464 Sum_probs=189.0
Q ss_pred EEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y--~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+++| ++..+|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|+|+|.++... ..... +.+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~-~~~~l-r~~i 79 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV-PLQKW-RKAF 79 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhC-CHHHH-hhhE
Confidence 8899999999 45679999999999999999999999999999999999998 789999999987543 22222 3469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCC-----------CChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-----------LSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~-----------LSGGqrQRvaIA 238 (352)
+|+||++.+|+ .||++|+.... .... +++.++++.+||.++.+++|.. ||||||||++||
T Consensus 80 ~~v~q~~~lf~-~tv~~nl~~~~----~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~La 150 (275)
T cd03289 80 GVIPQKVFIFS-GTFRKNLDPYG----KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLA 150 (275)
T ss_pred EEECCCcccch-hhHHHHhhhcc----CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 99999999998 59999996321 1222 3467788999999999999987 999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|+||||||||++||+.++..+.+.|+++.+ + +|||+|||+++++.. ||||++|++
T Consensus 151 Rall~-------~p~illlDEpts~LD~~~~~~l~~~l~~~~~-~----------~tii~isH~~~~i~~-~dri~vl~~ 211 (275)
T cd03289 151 RSVLS-------KAKILLLDEPSAHLDPITYQVIRKTLKQAFA-D----------CTVILSEHRIEAMLE-CQRFLVIEE 211 (275)
T ss_pred HHHhc-------CCCEEEEECccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEECCHHHHHh-CCEEEEecC
Confidence 99997 6999999999999999999999999998743 4 599999999999876 999999999
Q ss_pred CeEEEeecccccccCCcHHHHHHhc
Q 018638 319 GKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 319 G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
|++++.|+++++... ..+..+++.
T Consensus 212 G~i~~~g~~~~l~~~-~~~~~~~~~ 235 (275)
T cd03289 212 NKVRQYDSIQKLLNE-KSHFKQAIS 235 (275)
T ss_pred CeEeecCCHHHHhhC-cHHHHHHHh
Confidence 999999999998763 355666654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=385.03 Aligned_cols=234 Identities=28% Similarity=0.410 Sum_probs=208.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
+.|++++++|.|++..++++|||+|++||++||+|.||||||||+++|.|+++||+|+|+++|+++.- .++.+..+..|
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~-~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRI-KSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEecc-CCHHHHHHcCC
Confidence 46999999999999999999999999999999999999999999999999999999999999998754 45555666789
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhh--cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYE--NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~--~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
|+|+|++.|+|.+||.|||.++... ....+.++..++++++.+++||+-..++++.+||-||||||.|-+||.+
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr---- 157 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR---- 157 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc----
Confidence 9999999999999999999998642 1234677888899999999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+-|-|...+++++.|+.|+++| +|||+|||.++++.++|||+.||++|+++...++
T Consensus 158 ---~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G----------~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~ 224 (501)
T COG3845 158 ---GARLLILDEPTAVLTPQEADELFEILRRLAAEG----------KTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP 224 (501)
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC
Confidence 599999999999999999999999999999998 5999999999999999999999999998776652
Q ss_pred -cccccCCcHHHHHHhcC
Q 018638 328 -HEFTSSSNPIVQQFASG 344 (352)
Q Consensus 328 -~~~~~~~~~~~~~~~~~ 344 (352)
.+. ....+.++.-|
T Consensus 225 ~~~~---t~~ela~lMvG 239 (501)
T COG3845 225 VAET---TEEELAELMVG 239 (501)
T ss_pred CCCC---CHHHHHHHhcC
Confidence 221 23444555554
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=353.37 Aligned_cols=198 Identities=31% Similarity=0.456 Sum_probs=176.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++... . .. .+.+++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~-~~-~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-R-DS-IARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-c-HH-hhhheEE
Confidence 5789999999988999999999999999999999999999999999999999999999999886432 1 11 2346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
++|++.+++.+|++||+.+... .. ..+++.++++.+++.++.++++.+||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~----~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-------~ 143 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHA----DH---SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLS-------G 143 (201)
T ss_pred eccccccCCCcCHHHHHHhhcc----cc---cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhc-------C
Confidence 9999999888999999987431 11 23457889999999988899999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|++|||||||++||+.++..+.++|+++.++| .|+|++|||...+..+|++++++
T Consensus 144 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 144 RPLWILDEPTTALDKAGVARFAEAMAGHCARG----------GMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999999999987766 59999999999999999999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-48 Score=400.31 Aligned_cols=284 Identities=26% Similarity=0.400 Sum_probs=214.6
Q ss_pred cchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q 018638 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (352)
.....+...+..++.++..+.+.. ........+.+|+......|.... ..... . ..+.
T Consensus 275 g~~~~~~~~~~~~~~pl~~~~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~-~~~~~-------------~---~~~~ 332 (576)
T TIGR02204 275 GTLGQFVFYAVMVAGSIGTLSEVW-----GELQRAAGAAERLIELLQAEPDIK-APAHP-------------K---TLPV 332 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCcCC-CCCCC-------------c---cCCc
Confidence 344444444555566776666555 566777888888888776653211 00000 0 0000
Q ss_pred CCcceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 87 DGDVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.....|+++||+++|++ +.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|++||.++.... ...
T Consensus 333 ~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~-~~~ 411 (576)
T TIGR02204 333 PLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD-PAE 411 (576)
T ss_pred CCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC-HHH
Confidence 11234999999999964 56999999999999999999999999999999999999999999999999986543 222
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMK 232 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGqr 232 (352)
. +.+|+|+||++.+|+ .|++|||.++. ...+. +++.++++.+|+.+..++. ...||||||
T Consensus 412 ~-~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~---~~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 412 L-RARMALVPQDPVLFA-ASVMENIRYGR---PDATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred H-HHhceEEccCCcccc-ccHHHHHhcCC---CCCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 2 236999999999997 59999998743 11222 3466677777775544433 357999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
||++||||+++ +|++|||||||++||+.+++.+++.|+++.+ + +|+|+|||+++.+. .|||
T Consensus 483 Qrl~laRal~~-------~~~ililDEpts~lD~~~~~~i~~~l~~~~~-~----------~t~IiitH~~~~~~-~~d~ 543 (576)
T TIGR02204 483 QRIAIARAILK-------DAPILLLDEATSALDAESEQLVQQALETLMK-G----------RTTLIIAHRLATVL-KADR 543 (576)
T ss_pred HHHHHHHHHHh-------CCCeEEEeCcccccCHHHHHHHHHHHHHHhC-C----------CEEEEEecchHHHH-hCCE
Confidence 99999999997 5999999999999999999999999999854 3 59999999998876 5899
Q ss_pred EEEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 313 LIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|++|++|++++.|+.+++... ++..++++
T Consensus 544 vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~ 572 (576)
T TIGR02204 544 IVVMDQGRIVAQGTHAELIAK-GGLYARLA 572 (576)
T ss_pred EEEEECCEEEeeecHHHHHHc-CChHHHHH
Confidence 999999999999987776543 33334443
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=424.58 Aligned_cols=215 Identities=39% Similarity=0.615 Sum_probs=187.0
Q ss_pred eEEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 91 LIDCRNVYKSFGEK---HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~~---~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.|+++||+|+|+.+ .+|+|+||+|++|+.+||||||||||||++++|.+++.|++|+|++||.|+..+.. +|++ .
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~-~~lr-~ 427 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL-KWLR-S 427 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch-HHHH-h
Confidence 49999999999865 59999999999999999999999999999999999999999999999999887643 3443 3
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRva 236 (352)
+||.|+|+|.||. .||+|||.|+. ++..++++.++++..+..++..+.| .+||||||||||
T Consensus 428 ~iglV~QePvlF~-~tI~eNI~~G~-------~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIA 499 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFA-TTIRENIRYGK-------PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIA 499 (1228)
T ss_pred hcCeeeechhhhc-ccHHHHHhcCC-------CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHH
Confidence 7999999999996 79999999964 1223445667777777666655554 579999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||++ +|+|||||||||+||+++++.+++.|.++.+ | .|.|+|+|+++++++ ||+|++|
T Consensus 500 IARalv~-------~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-g----------rTTivVaHRLStIrn-aD~I~v~ 560 (1228)
T KOG0055|consen 500 IARALVR-------NPKILLLDEATSALDAESERVVQEALDKASK-G----------RTTIVVAHRLSTIRN-ADKIAVM 560 (1228)
T ss_pred HHHHHHh-------CCCEEEecCcccccCHHHHHHHHHHHHHhhc-C----------CeEEEEeeehhhhhc-cCEEEEE
Confidence 9999998 5999999999999999999999999988754 4 499999999999998 7999999
Q ss_pred eCCeEEEeecccccccCC
Q 018638 317 YEGKIVWQGMTHEFTSSS 334 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~~~ 334 (352)
++|+|++.|+.+|+....
T Consensus 561 ~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 561 EEGKIVEQGTHDELIALG 578 (1228)
T ss_pred ECCEEEEecCHHHHHhcc
Confidence 999999999888876544
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-48 Score=342.63 Aligned_cols=173 Identities=42% Similarity=0.750 Sum_probs=158.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .. .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~-~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP--EE-VKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch--Hh-hhccEEE
Confidence 47899999998888999999999999999999999999999999999999999999999999875421 22 2346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+|+.||+. ||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~~~~~-------------------------------------LS~G~~qrv~laral~~-------~ 113 (173)
T cd03230 78 LPEEPSLYENLTVRENLK-------------------------------------LSGGMKQRLALAQALLH-------D 113 (173)
T ss_pred EecCCccccCCcHHHHhh-------------------------------------cCHHHHHHHHHHHHHHc-------C
Confidence 999999998899999973 99999999999999996 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
|++|||||||++||+.++..+.++|++++++| .|+|++|||++++..+||++++|++|++
T Consensus 114 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 114 PELLILDEPTSGLDPESRREFWELLRELKKEG----------KTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999998776 5999999999999999999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=357.51 Aligned_cols=210 Identities=28% Similarity=0.477 Sum_probs=177.4
Q ss_pred CCcceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 87 DGDVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
....+|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~ 85 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE-HKY 85 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcC-HHH
Confidence 34568999999999975 36999999999999999999999999999999999999999999999998764321 111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHH-----HHHHHHHHHHc--CCCcccccCCCCCChHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI-----SELVKENLAAV--GLKGVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~-----~~~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRva 236 (352)
.+.+++|+||++.+|+ .||+||+.++... ....+. ...+.++++.+ |++...++++.+|||||||||+
T Consensus 86 -~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 86 -LHSKVSLVGQEPVLFA-RSLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred -HHhhEEEEecccHHHh-hhHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 2336999999998887 6999999875421 111111 12246778888 8888889999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||++||+.++..+.+.|+++.+ + .|+|++|||++++.. ||+|++|
T Consensus 161 laral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~i~~l 221 (226)
T cd03248 161 IARALIR-------NPQVLILDEATSALDAESEQQVQQALYDWPE-R----------RTVLVIAHRLSTVER-ADQILVL 221 (226)
T ss_pred HHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-C----------CEEEEEECCHHHHHh-CCEEEEe
Confidence 9999997 6999999999999999999999999999865 3 499999999999965 9999999
Q ss_pred eCCeE
Q 018638 317 YEGKI 321 (352)
Q Consensus 317 ~~G~i 321 (352)
++|++
T Consensus 222 ~~g~i 226 (226)
T cd03248 222 DGGRI 226 (226)
T ss_pred cCCcC
Confidence 99974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=400.17 Aligned_cols=276 Identities=24% Similarity=0.381 Sum_probs=209.2
Q ss_pred cchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q 018638 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (352)
...+.+...+..++.++..++... ........+.+++.+....|+........ ....
T Consensus 273 g~l~a~~~~~~~l~~~~~~l~~~~-----~~~~~~~~~~~ri~~~~~~~~~~~~~~~~------------------~~~~ 329 (585)
T TIGR01192 273 GEVIAFIGFANLLIGRLDQMSGFI-----TQIFEARAKLEDFFDLEDSVFQREEPADA------------------PELP 329 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCccccCCccC------------------CCCC
Confidence 334444444555566776666555 45566777788887776655321100000 0000
Q ss_pred CCcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 87 DGDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
.....|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....... .
T Consensus 330 ~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~- 407 (585)
T TIGR01192 330 NVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES-L- 407 (585)
T ss_pred CCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHH-H-
Confidence 11224999999999975 56999999999999999999999999999999999999999999999999876543222 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-----------CCcccccCCCCCChHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-----------LKGVEDRLPSELSGGMKKR 234 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g-----------L~~~~~~~~~~LSGGqrQR 234 (352)
+.+++||+|++.+|+ .|++|||.++. ...+.++ +.++++.++ ++.........||||||||
T Consensus 408 ~~~i~~v~q~~~lf~-~ti~~Ni~~~~---~~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr 479 (585)
T TIGR01192 408 RKSIATVFQDAGLFN-RSIRENIRLGR---EGATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR 479 (585)
T ss_pred HhheEEEccCCccCc-ccHHHHHhcCC---CCCCHHH----HHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 346999999999997 59999998853 1123333 333344433 3444455667899999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
++|||||++ +|++|||||||++||+.+++.+.+.|.++.+ + .|+|+|||+++.+.. ||+|+
T Consensus 480 l~lARall~-------~p~ililDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvI~isH~~~~~~~-~d~i~ 540 (585)
T TIGR01192 480 LAIARAILK-------NAPILVLDEATSALDVETEARVKNAIDALRK-N----------RTTFIIAHRLSTVRN-ADLVL 540 (585)
T ss_pred HHHHHHHhc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEEcChHHHHc-CCEEE
Confidence 999999997 5999999999999999999999999998854 4 599999999999865 89999
Q ss_pred EEeCCeEEEeecccccccCC
Q 018638 315 FLYEGKIVWQGMTHEFTSSS 334 (352)
Q Consensus 315 vL~~G~iv~~g~~~~~~~~~ 334 (352)
+|++|++++.|+.+++....
T Consensus 541 ~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 541 FLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred EEECCEEEEECCHHHHHHCC
Confidence 99999999999877776543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=343.02 Aligned_cols=177 Identities=46% Similarity=0.751 Sum_probs=159.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........+.+++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 47899999999888999999999999999999999999999999999999999999999999875432101122346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
++|++.+|+.+|++||+.+. ||||||||++|||||+. +
T Consensus 81 ~~q~~~~~~~~t~~~~l~~~-----------------------------------lS~G~~qr~~la~al~~-------~ 118 (178)
T cd03229 81 VFQDFALFPHLTVLENIALG-----------------------------------LSGGQQQRVALARALAM-------D 118 (178)
T ss_pred EecCCccCCCCCHHHheeec-----------------------------------CCHHHHHHHHHHHHHHC-------C
Confidence 99999998889999998652 99999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+++||||||+|||+.++..+.++|++++++ + .|+|++|||++++..+||++++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLG----------ITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999876 5 599999999999999999999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=398.47 Aligned_cols=274 Identities=19% Similarity=0.280 Sum_probs=210.7
Q ss_pred ccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 018638 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (352)
....+.+...+..++.|+..++... ........+.+|+......|+...... . . .+
T Consensus 253 ~g~l~a~~~~~~~~~~pl~~l~~~~-----~~~~~~~~a~~ri~~ll~~~~~~~~~~-~---------------~---~~ 308 (569)
T PRK10789 253 LGQLTSFVMYLGLMIWPMLALAWMF-----NIVERGSAAYSRIRAMLAEAPVVKDGS-E---------------P---VP 308 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccCCC-C---------------C---CC
Confidence 3444445555555667776665555 566667778888888776653211000 0 0 00
Q ss_pred CCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 86 DDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.....|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++...... .
T Consensus 309 -~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~-~ 386 (569)
T PRK10789 309 -EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLD-S 386 (569)
T ss_pred -CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHH-H
Confidence 11123999999999964 5699999999999999999999999999999999999999999999999987654322 2
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc-----------cCCCCCChHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-----------RLPSELSGGMK 232 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSGGqr 232 (352)
. +.+|+|++|++.+|+ .|++|||.++. ...+.+ ++.++++.++++++.. .....||||||
T Consensus 387 ~-~~~i~~v~q~~~lf~-~ti~~Ni~~~~---~~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~ 457 (569)
T PRK10789 387 W-RSRLAVVSQTPFLFS-DTVANNIALGR---PDATQQ----EIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQK 457 (569)
T ss_pred H-HhheEEEccCCeecc-ccHHHHHhcCC---CCCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 2 336999999999997 49999998753 112332 3455666666654433 34468999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
||++|||||++ +|++|||||||++||+.++..+++.|+++. ++ .|+|+|||+++.+.. ||+
T Consensus 458 qRi~lARall~-------~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~----------~tii~itH~~~~~~~-~d~ 518 (569)
T PRK10789 458 QRISIARALLL-------NAEILILDDALSAVDGRTEHQILHNLRQWG-EG----------RTVIISAHRLSALTE-ASE 518 (569)
T ss_pred HHHHHHHHHhc-------CCCEEEEECccccCCHHHHHHHHHHHHHHh-CC----------CEEEEEecchhHHHc-CCE
Confidence 99999999997 599999999999999999999999999875 34 599999999998865 899
Q ss_pred EEEEeCCeEEEeecccccccC
Q 018638 313 LIFLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~~ 333 (352)
|++|++|++++.|+.+++...
T Consensus 519 i~~l~~G~i~~~g~~~~l~~~ 539 (569)
T PRK10789 519 ILVMQHGHIAQRGNHDQLAQQ 539 (569)
T ss_pred EEEEeCCEEEEecCHHHHHHc
Confidence 999999999999987776543
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=343.32 Aligned_cols=177 Identities=31% Similarity=0.523 Sum_probs=158.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++|++++| +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.++
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~i 77 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS-PRDAIRAGI 77 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccC-HHHHHhCCe
Confidence 579999999999 899999999999999999999999999999999999999999999999876432 122223469
Q ss_pred EEEecCC---CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 170 GLVFQSA---ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 170 g~v~Q~~---~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
+|+||++ .+++.+|++||+.+... ||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------LS~G~~qrl~la~al~~--- 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL---------------------------------LSGGNQQKVVLARWLAR--- 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh---------------------------------cCHHHHHHHHHHHHHcc---
Confidence 9999995 57888999999977420 99999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||++||+.++..+.++|+++++++ .|+|++||+++++.++||++++|++|++
T Consensus 122 ----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 ----DPRVLILDEPTRGVDVGAKAEIYRLIRELADAG----------KAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ----CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 699999999999999999999999999997665 5999999999999999999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-48 Score=353.06 Aligned_cols=205 Identities=30% Similarity=0.484 Sum_probs=173.8
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... .... +.++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i 80 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG-LHDL-RSRI 80 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCC-HHHH-hhhE
Confidence 789999999964 47999999999999999999999999999999999999999999999999865422 2222 3469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccc-----------ccCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSGGqrQRvaIA 238 (352)
+|+||++.+++ .|++||+.+.. .... +++.++++.+++.+.. ++.+.+||||||||++||
T Consensus 81 ~~~~q~~~l~~-~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~la 151 (221)
T cd03244 81 SIIPQDPVLFS-GTIRSNLDPFG----EYSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLA 151 (221)
T ss_pred EEECCCCcccc-chHHHHhCcCC----CCCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHH
Confidence 99999999886 69999996531 1222 2345566666665544 468899999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||++||+.++..+.++|+++.+ + .|||++||+++++.. ||++++|++
T Consensus 152 ral~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~i~~l~~ 212 (221)
T cd03244 152 RALLR-------KSKILVLDEATASVDPETDALIQKTIREAFK-D----------CTVLTIAHRLDTIID-SDRILVLDK 212 (221)
T ss_pred HHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEeCCHHHHhh-CCEEEEEEC
Confidence 99997 6999999999999999999999999999864 3 499999999999976 899999999
Q ss_pred CeEEEeec
Q 018638 319 GKIVWQGM 326 (352)
Q Consensus 319 G~iv~~g~ 326 (352)
|++++.|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 99998774
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=361.42 Aligned_cols=199 Identities=34% Similarity=0.589 Sum_probs=180.6
Q ss_pred ceEEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC
Q 018638 90 VLIDCRNVYKSFGE---------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 90 ~~l~~~nls~~y~~---------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~ 160 (352)
++++++||+|.|.. ..+++||||+|++||++||||+||||||||-|+|+||++|++|+|+|+|+++..+
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~-- 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL-- 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc--
Confidence 57999999999952 3799999999999999999999999999999999999999999999999875432
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
. .++..+++.++|+.+|+. +.++|+|++|||||||||+|||
T Consensus 81 ---------~-----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IAR 122 (268)
T COG4608 81 ---------S-----------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIAR 122 (268)
T ss_pred ---------c-----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHH
Confidence 1 234456789999999996 5899999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|+++++|||+|+||...+.+++++|.+++++-+ .|+++||||++.+..+||||+||+.|
T Consensus 123 ALal-------~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~---------lt~lFIsHDL~vv~~isdri~VMy~G 186 (268)
T COG4608 123 ALAL-------NPKLIVADEPVSALDVSVQAQILNLLKDLQEELG---------LTYLFISHDLSVVRYISDRIAVMYLG 186 (268)
T ss_pred HHhh-------CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC---------CeEEEEEEEHHhhhhhcccEEEEecC
Confidence 9985 7999999999999999999999999999987631 69999999999999999999999999
Q ss_pred eEEEeecccccc-cCCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+|++.|++++++ ++.||+++.++..
T Consensus 187 ~iVE~g~~~~~~~~p~HpYTk~Ll~a 212 (268)
T COG4608 187 KIVEIGPTEEVFSNPLHPYTKALLSA 212 (268)
T ss_pred ceeEecCHHHHhhCCCCHHHHHHHHh
Confidence 999999999865 6789999999875
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=391.60 Aligned_cols=220 Identities=25% Similarity=0.404 Sum_probs=189.0
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||++ .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 255 ~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~-~~~~~~~~~ 328 (501)
T PRK10762 255 EVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTR-SPQDGLANG 328 (501)
T ss_pred CcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC-CHHHHHHCC
Confidence 45899999995 379999999999999999999999999999999999999999999999987543 221222346
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhhhhhc-C---C-CCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 169 IGLVFQSA---ALFDSLTVRENVGFLLYEN-S---K-MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 169 ig~v~Q~~---~l~~~lTV~eni~~~~~~~-~---~-~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
||||||++ .+++.+||.||+.++.... . + ....+..+++.++++.+|+. +..++++.+|||||||||+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~ 408 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR 408 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence 99999996 5788899999998753211 0 1 22333456688999999995 6889999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||+|||+.++..+.++|+++.++| .|||++|||++++..+||||++|++|
T Consensus 409 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tviivtHd~~~~~~~~d~v~~l~~G 471 (501)
T PRK10762 409 GLMT-------RPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG----------LSIILVSSEMPEVLGMSDRILVMHEG 471 (501)
T ss_pred HHhh-------CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 9997 699999999999999999999999999998776 59999999999999999999999999
Q ss_pred eEEEeecccccc
Q 018638 320 KIVWQGMTHEFT 331 (352)
Q Consensus 320 ~iv~~g~~~~~~ 331 (352)
+++..|+++++.
T Consensus 472 ~i~~~~~~~~~~ 483 (501)
T PRK10762 472 RISGEFTREQAT 483 (501)
T ss_pred EEEEEeccccCC
Confidence 999999887753
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=361.12 Aligned_cols=228 Identities=22% Similarity=0.340 Sum_probs=185.3
Q ss_pred ceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.... ... .+.
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~-~~~-~~~ 95 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP-LHT-LRS 95 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCC-HHH-Hhh
Confidence 45999999999986 57999999999999999999999999999999999999999999999999875432 112 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArA 240 (352)
+|+|+||++.+|+ .|+++|+.... . .......+ .+.+.++.+ +++...++.+.+||||||||++||||
T Consensus 96 ~i~~v~q~~~l~~-~tv~~nl~~~~---~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 96 RLSIILQDPILFS-GSIRFNLDPEC---K-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred hEEEECCCCcccc-cHHHHhcCcCC---C-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 6999999999887 59999985421 0 11111111 123344444 55556667778999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.++|+++.+ + .|||++||+++.+.. ||||++|++|+
T Consensus 171 l~~-------~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~----------~tiii~sh~~~~~~~-~dri~~l~~G~ 231 (257)
T cd03288 171 FVR-------KSSILIMDEATASIDMATENILQKVVMTAFA-D----------RTVVTIAHRVSTILD-ADLVLVLSRGI 231 (257)
T ss_pred Hhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHhcC-C----------CEEEEEecChHHHHh-CCEEEEEECCE
Confidence 997 6999999999999999999999999998753 4 599999999999986 99999999999
Q ss_pred EEEeecccccccCCcHHHHHHhc
Q 018638 321 IVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 321 iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
+++.|+++++........++++.
T Consensus 232 i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 232 LVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred EEEeCCHHHHHhccchHHHHHHh
Confidence 99999888876554555565554
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=348.16 Aligned_cols=199 Identities=30% Similarity=0.421 Sum_probs=174.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .. .+.+++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~--~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD---PD--VAEACH 76 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc---hh--hHhhcE
Confidence 6999999999998889999999999999999999999999999999999999999999999987531 11 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|++|++.+++.+|+.||+.+...... .. .+.+.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~-~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~------- 144 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLG-GE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS------- 144 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcC-Cc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhc-------
Confidence 99999888888999999987542221 11 2347889999999888899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
+|++|||||||++||+.++..+.++|+++.++| .|||++||+++++.. |+++-+..
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQG----------GIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCchhhcc--CcEEeecC
Confidence 699999999999999999999999999987766 599999999999986 89887744
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=344.50 Aligned_cols=183 Identities=37% Similarity=0.569 Sum_probs=163.7
Q ss_pred eEEEEeEEEEeCC------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCceEEEECCEeCCCCCChh
Q 018638 91 LIDCRNVYKSFGE------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 91 ~l~~~nls~~y~~------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~G~I~i~G~~~~~~~~~~ 162 (352)
.|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~----~ 78 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK----R 78 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch----H
Confidence 4899999999975 67999999999999999999999999999999999999 9999999999998642 1
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
. .+.+++|+||++.+|+.+|++||+.+... .. +||||||||++|||||+
T Consensus 79 ~-~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------------~~-----------------~LS~G~~qrv~laral~ 127 (194)
T cd03213 79 S-FRKIIGYVPQDDILHPTLTVRETLMFAAK-------------LR-----------------GLSGGERKRVSIALELV 127 (194)
T ss_pred h-hhheEEEccCcccCCCCCcHHHHHHHHHH-------------hc-----------------cCCHHHHHHHHHHHHHH
Confidence 1 23369999999999988999999976421 00 89999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHHhhcCEEEEEeCCeE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~~~aDrv~vL~~G~i 321 (352)
. +|++|||||||++||+.++..+.++|+++++++ .|+|++|||++ ++..+||++++|++|++
T Consensus 128 ~-------~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 128 S-------NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTG----------RTIICSIHQPSSEIFELFDKLLLLSQGRV 190 (194)
T ss_pred c-------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence 7 599999999999999999999999999997666 59999999996 78889999999999999
Q ss_pred EEee
Q 018638 322 VWQG 325 (352)
Q Consensus 322 v~~g 325 (352)
++.|
T Consensus 191 ~~~~ 194 (194)
T cd03213 191 IYFG 194 (194)
T ss_pred EecC
Confidence 8654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=346.48 Aligned_cols=200 Identities=26% Similarity=0.432 Sum_probs=169.9
Q ss_pred ceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~-~~ 82 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP-LEDL-RS 82 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCC-HHHH-Hh
Confidence 34999999999975 47999999999999999999999999999999999999999999999999864321 2222 33
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|+|+||++.+|+ .|++||+.+.. ....+ .+.++++ .++.+.+||||||||++|||||+.
T Consensus 83 ~i~~v~q~~~~~~-~tv~~~l~~~~----~~~~~----~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~---- 142 (207)
T cd03369 83 SLTIIPQDPTLFS-GTIRSNLDPFD----EYSDE----EIYGALR-------VSEGGLNLSQGQRQLLCLARALLK---- 142 (207)
T ss_pred hEEEEecCCcccC-ccHHHHhcccC----CCCHH----HHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhh----
Confidence 6999999999887 59999997531 12222 2334443 467899999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..+.++|+++. ++ .|+|++||+++++.. ||++++|++|++++.|+
T Consensus 143 ---~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~----------~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 143 ---RPRVLVLDEATASIDYATDALIQKTIREEF-TN----------STILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CC----------CEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence 699999999999999999999999999985 34 599999999999976 89999999999998775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-48 Score=386.26 Aligned_cols=220 Identities=33% Similarity=0.518 Sum_probs=190.7
Q ss_pred EEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~~~-~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|+++||+++|+.++ +|+++||+|++||.+||+|+|||||||++|+|.++.+ ++|+|++||+++....... .|+-||
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~S--lR~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLES--LRQSIG 428 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHH--hhhhee
Confidence 99999999998766 9999999999999999999999999999999999999 9999999999987653322 233599
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHH
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALAR 239 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIAr 239 (352)
|||||..||++ ||.+||.++.. ..+ .++|.++++++|+++...+.| ..|||||||||+|||
T Consensus 429 ~VPQd~~LFnd-TIl~NI~YGn~---sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 429 VVPQDSVLFND-TILYNIKYGNP---SAS----DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred EeCCcccccch-hHHHHhhcCCC---CcC----HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence 99999999985 99999998641 122 345788899999988777776 469999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
|+++| |+|+++|||||+||.++++++++.+.+.. .+ +|+|+|.||++++.. ||+|++|++|
T Consensus 501 a~lKd-------a~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~----------rTvI~IvH~l~ll~~-~DkI~~l~nG 561 (591)
T KOG0057|consen 501 AFLKD-------APILLLDEATSALDSETEREILDMIMDVM-SG----------RTVIMIVHRLDLLKD-FDKIIVLDNG 561 (591)
T ss_pred HHhcC-------CCeEEecCcccccchhhHHHHHHHHHHhc-CC----------CeEEEEEecchhHhc-CCEEEEEECC
Confidence 99984 99999999999999999999999999843 33 599999999999987 5999999999
Q ss_pred eEEEeecccccccCCcHHHHHHh
Q 018638 320 KIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 320 ~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
++.+.|+.+|++. .+....++.
T Consensus 562 ~v~e~gth~ell~-~s~~~~~~w 583 (591)
T KOG0057|consen 562 TVKEYGTHSELLA-PSELYADLW 583 (591)
T ss_pred eeEEeccHHHHhh-hhhHHHHHh
Confidence 9999998888876 444444444
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=370.38 Aligned_cols=240 Identities=28% Similarity=0.460 Sum_probs=215.1
Q ss_pred cceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCC
Q 018638 89 DVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLI 159 (352)
Q Consensus 89 ~~~l~~~nls~~y~----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~ 159 (352)
.++|+++|+++.|. ...++++|||+|.+||.+||||.||||||-..+.|+||++- -+|+|.|+|+++....
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 46799999999996 57899999999999999999999999999999999999975 3799999999986643
Q ss_pred Chhh--hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---cccccCCCCCChHHH
Q 018638 160 SDEE--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRLPSELSGGMK 232 (352)
Q Consensus 160 ~~~~--~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~---~~~~~~~~~LSGGqr 232 (352)
.... .+..+|++|||+| .|.|-.|+...|...+..+.+.+.++.++++.++|+.+|+. ..++.+|++||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 2221 2233699999998 68888899999999888888889999999999999999995 367899999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
|||.||+||++ +|++||.||||++||...+.+++++|++|.++-+ .++++||||+..+.++|||
T Consensus 164 QRVMIAMALan-------~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~g---------Ma~lfITHDL~iVr~~ADr 227 (534)
T COG4172 164 QRVMIAMALAN-------EPDLLIADEPTTALDVTVQAQILDLLKELQAELG---------MAILFITHDLGIVRKFADR 227 (534)
T ss_pred hHHHHHHHHcC-------CCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhC---------cEEEEEeccHHHHHHhhhh
Confidence 99999999986 6999999999999999999999999999987621 6999999999999999999
Q ss_pred EEEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 313 LIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
|+||.+|++++.|++++++ .+.|+|++.++..
T Consensus 228 V~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 228 VYVMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred EEEEeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 9999999999999999866 6789999999875
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=344.96 Aligned_cols=197 Identities=35% Similarity=0.516 Sum_probs=171.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. . .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~-~-~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ-RD-E-PHRNILY 77 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccc-hH-H-hhhheEE
Confidence 5789999999999999999999999999999999999999999999999999999999999986543 11 1 2336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
++|++.+++.+|+.||+.+...... . + .+++.++++.+++.++.++++.+|||||||||+|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~--~-~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 145 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHG--G-A--QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLS-------R 145 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcC--C-c--HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhc-------C
Confidence 9999999888999999987643221 1 1 2357789999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
|++|||||||++||+.++..+.++|++++++| .|+|++||+...+. |+|++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sH~~~~~~--~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARG----------GIVLLTTHQDLGLV--EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEEccccccc--ceEEee
Confidence 99999999999999999999999999997766 59999999986654 577764
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-47 Score=345.19 Aligned_cols=188 Identities=32% Similarity=0.564 Sum_probs=165.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--CCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+++|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|+++.... .....+.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLP-PEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCC-HHHHhhCcE
Confidence 4789999999988899999999999999999999999999999999999 4799999999999876532 222223359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+++..++++++ ++.+.+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~~~~~~l--------------------------------~~~~~~LS~G~~qrv~laral~~------ 121 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL--------------------------------RYVNEGFSGGEKKRNEILQLLLL------ 121 (200)
T ss_pred EEeecChhhccCccHHHHH--------------------------------hhccccCCHHHHHHHHHHHHHhc------
Confidence 9999999999888887776 12236899999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHh-hcCEEEEEeCCeEEEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR-AVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~-~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||++||+.++..+.++|+++++++ .|||++||+++.+.. +||++++|++|++++.| +.
T Consensus 122 -~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~----------~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~ 189 (200)
T cd03217 122 -EPDLAILDEPDSGLDIDALRLVAEVINKLREEG----------KSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DK 189 (200)
T ss_pred -CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cH
Confidence 699999999999999999999999999997765 599999999999988 79999999999999998 44
Q ss_pred cc
Q 018638 329 EF 330 (352)
Q Consensus 329 ~~ 330 (352)
++
T Consensus 190 ~~ 191 (200)
T cd03217 190 EL 191 (200)
T ss_pred HH
Confidence 43
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=346.19 Aligned_cols=197 Identities=25% Similarity=0.353 Sum_probs=172.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .+.+++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--~~~-~~~~i~ 77 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD--LCT-YQKQLC 77 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC--HHH-HHhheE
Confidence 58999999999988899999999999999999999999999999999999999999999999876431 111 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|++|++.+++.+||+||+.++.... .. ...+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~----~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~------- 144 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFS----PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMS------- 144 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcC----cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhc-------
Confidence 9999999988899999998864211 11 2357889999999888889999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
+|++|||||||++||+.++..+.++|+++++++ .|||++||+.+.+.. ||.-+
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKG----------GAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCchhccc-cchhh
Confidence 699999999999999999999999999987666 599999999998866 67654
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-47 Score=342.96 Aligned_cols=182 Identities=30% Similarity=0.487 Sum_probs=161.9
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCceEEEECCEeCCCCCChhhh
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
+|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ...
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-----~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-----KNF 77 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-----HHh
Confidence 5899999999974 67999999999999999999999999999999999986 489999999999863 111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
+.+++|++|++.+|+.+|++||+.+... ++ +|||||||||+|||||+.
T Consensus 78 -~~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------------~~-------------~LSgGe~qrv~la~al~~- 125 (192)
T cd03232 78 -QRSTGYVEQQDVHSPNLTVREALRFSAL-----------------LR-------------GLSVEQRKRLTIGVELAA- 125 (192)
T ss_pred -hhceEEecccCccccCCcHHHHHHHHHH-----------------Hh-------------cCCHHHhHHHHHHHHHhc-
Confidence 2369999999999988999999987421 00 899999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHHhhcCEEEEEeC-CeEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLIFLYE-GKIV 322 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~~~aDrv~vL~~-G~iv 322 (352)
+|++|||||||++||+.++..+++.|++++++| .|+|++||+++ .+..+|||+++|++ |+++
T Consensus 126 ------~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 126 ------KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSG----------QAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189 (192)
T ss_pred ------CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcC----------CEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence 699999999999999999999999999997665 59999999998 57889999999999 9998
Q ss_pred Eee
Q 018638 323 WQG 325 (352)
Q Consensus 323 ~~g 325 (352)
+.|
T Consensus 190 ~~g 192 (192)
T cd03232 190 YFG 192 (192)
T ss_pred eCC
Confidence 764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-47 Score=344.57 Aligned_cols=192 Identities=28% Similarity=0.416 Sum_probs=165.4
Q ss_pred eEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC---CCceEEEECCEeCCCCCChhh
Q 018638 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 91 ~l~~~nls~~y~----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~---p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.+.++||+|.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~--~- 79 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA--E- 79 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch--h-
Confidence 478999999995 4579999999999999999999999999999999999999 89999999999875421 1
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
..+.+++|+||++.+|+.+||+||+.+.... . .++++.+||||||||++|||||+.
T Consensus 80 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------~-----------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRC-------------K-----------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred hhcceEEEEecccccCCCCcHHHHHhhhhhh-------------c-----------cccchhhCCHHHHHHHHHHHHHhh
Confidence 1234699999999999989999999874310 0 567889999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEE-EEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV-VVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvI-ivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|++|||||||++||+.+++.++++|++++++++ .|+| +++|+.+++.++||++++|++|+++
T Consensus 136 -------~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~---------~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 136 -------RASVLCWDNSTRGLDSSTALEILKCIRTMADVLK---------TTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred -------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC---------CEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 5999999999999999999999999999976521 3555 4566778999999999999999998
Q ss_pred Eee
Q 018638 323 WQG 325 (352)
Q Consensus 323 ~~g 325 (352)
..|
T Consensus 200 ~~g 202 (202)
T cd03233 200 YYG 202 (202)
T ss_pred ecC
Confidence 754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=389.88 Aligned_cols=221 Identities=23% Similarity=0.365 Sum_probs=188.7
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.+.++++|+++. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 255 ~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~-~~~~~~~~~ 329 (501)
T PRK11288 255 EVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR-SPRDAIRAG 329 (501)
T ss_pred CcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCC-CHHHHHhCC
Confidence 457999999842 489999999999999999999999999999999999999999999999986432 222222346
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhhhhhcC---C--CCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 169 IGLVFQSA---ALFDSLTVRENVGFLLYENS---K--MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 169 ig~v~Q~~---~l~~~lTV~eni~~~~~~~~---~--~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
|+|+||++ .+|+.+|++||+.++..... + .......+.+.++++.+++. +..++++.+|||||||||+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 99999996 48888999999987542110 1 12223345678899999994 6889999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|+||||||||+|||+.++..++++|+++.++| .|||+||||++++.++|||+++|++|
T Consensus 410 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tviivsHd~~~~~~~~d~i~~l~~g 472 (501)
T PRK11288 410 WLSE-------DMKVILLDEPTRGIDVGAKHEIYNVIYELAAQG----------VAVLFVSSDLPEVLGVADRIVVMREG 472 (501)
T ss_pred HHcc-------CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHhhCCEEEEEECC
Confidence 9996 699999999999999999999999999998776 59999999999999999999999999
Q ss_pred eEEEeecccccc
Q 018638 320 KIVWQGMTHEFT 331 (352)
Q Consensus 320 ~iv~~g~~~~~~ 331 (352)
++++.|+++++.
T Consensus 473 ~i~~~~~~~~~~ 484 (501)
T PRK11288 473 RIAGELAREQAT 484 (501)
T ss_pred EEEEEEccccCC
Confidence 999999887654
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=341.39 Aligned_cols=179 Identities=41% Similarity=0.680 Sum_probs=160.7
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEE
Q 018638 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (352)
Q Consensus 93 ~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v 172 (352)
+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +..++|+
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~-~~~~-~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS-PKEL-ARKIAYV 78 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC-HHHH-HHHHhHH
Confidence 4789999999888999999999999999999999999999999999999999999999999875432 2221 2258888
Q ss_pred ecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
|| +++.+|+.+..++.+.+||||||||++|||||+. +|
T Consensus 79 ~q-----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~-------~p 116 (180)
T cd03214 79 PQ-----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQ-------EP 116 (180)
T ss_pred HH-----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc-------CC
Confidence 88 6777888888889999999999999999999997 69
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+++||||||++||+.++..+.++|++++++ + .|+|++||+++++.++||++++|++|++++.|
T Consensus 117 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~----------~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 117 PILLLDEPTSHLDIAHQIELLELLRRLARERG----------KTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999776 5 59999999999999999999999999997653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=355.99 Aligned_cols=221 Identities=23% Similarity=0.363 Sum_probs=189.9
Q ss_pred eEEEEeEEEEeCC--------------------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE
Q 018638 91 LIDCRNVYKSFGE--------------------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (352)
Q Consensus 91 ~l~~~nls~~y~~--------------------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i 150 (352)
.|+++||+|.|.. +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4788888888732 34899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChH
Q 018638 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGG 230 (352)
Q Consensus 151 ~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGG 230 (352)
+|+ +++++|++.+++.+|+.+|+.+..... +...++..+.+.++++.+++.+..++.+.+||||
T Consensus 84 ~g~---------------~~~~~~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 147 (264)
T PRK13546 84 NGE---------------VSVIAISAGLSGQLTGIENIEFKMLCM-GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSG 147 (264)
T ss_pred CCE---------------EeEEecccCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHH
Confidence 884 356778877777899999998754322 2345555666778899999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
|||||+|||||+. +|++|||||||+|||+.++..+.+.|.+++++| .|||++||+++++..+|
T Consensus 148 q~qrv~Laral~~-------~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g----------~tiIiisH~~~~i~~~~ 210 (264)
T PRK13546 148 MRAKLGFSINITV-------NPDILVIDEALSVGDQTFAQKCLDKIYEFKEQN----------KTIFFVSHNLGQVRQFC 210 (264)
T ss_pred HHHHHHHHHHHhh-------CCCEEEEeCccccCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHHc
Confidence 9999999999997 599999999999999999999999999997666 59999999999999999
Q ss_pred CEEEEEeCCeEEEeecccccccCCcHHHHHHhcC
Q 018638 311 DRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
|+|++|++|++++.|+.+++..........|...
T Consensus 211 d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 244 (264)
T PRK13546 211 TKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKK 244 (264)
T ss_pred CEEEEEECCEEEEeCCHHHHHHHhHHHHHHHHhc
Confidence 9999999999999998887765444455555543
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=337.62 Aligned_cols=171 Identities=36% Similarity=0.635 Sum_probs=154.0
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++|++++|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ... .+.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i 78 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD-PNE-LGDHV 78 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCC-HHH-HHhhe
Confidence 478999999975 56999999999999999999999999999999999999999999999999875432 222 23469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|++|++.+|+ .||+||+ ||||||||++|||||+.
T Consensus 79 ~~~~q~~~~~~-~tv~~~l--------------------------------------LS~G~~qrv~la~al~~------ 113 (173)
T cd03246 79 GYLPQDDELFS-GSIAENI--------------------------------------LSGGQRQRLGLARALYG------ 113 (173)
T ss_pred EEECCCCcccc-CcHHHHC--------------------------------------cCHHHHHHHHHHHHHhc------
Confidence 99999998887 5999997 99999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||++||+.++..+.++|++++++| .|+|++|||++++. .||++++|++|++
T Consensus 114 -~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 114 -NPRILVLDEPNSHLDVEGERALNQAIAALKAAG----------ATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred -CCCEEEEECCccccCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 699999999999999999999999999997766 59999999999884 7999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-47 Score=429.51 Aligned_cols=221 Identities=24% Similarity=0.397 Sum_probs=198.5
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 89 ~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
+.+|+++||+|+|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .... .+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~--~~~~-~r 2011 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT--NISD-VH 2011 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc--hHHH-Hh
Confidence 457999999999985 579999999999999999999999999999999999999999999999998743 1111 23
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
++|||+||++.+++.+||+||+.+....+ +.+.++.++.+.++++.+||.++.++++++|||||||||+||+||+.
T Consensus 2012 ~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~-g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~--- 2087 (2272)
T TIGR01257 2012 QNMGYCPQFDAIDDLLTGREHLYLYARLR-GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG--- 2087 (2272)
T ss_pred hhEEEEeccccCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc---
Confidence 46999999999999999999998865332 34455566778899999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|+||||||||+||||.+++.++++|++++++| +|||++||+++++..+||||++|++|+++..|+
T Consensus 2088 ----~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g----------~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2088 ----CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREG----------RAVVLTSHSMEECEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred ----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 699999999999999999999999999998776 599999999999999999999999999999998
Q ss_pred cccc
Q 018638 327 THEF 330 (352)
Q Consensus 327 ~~~~ 330 (352)
++++
T Consensus 2154 ~q~L 2157 (2272)
T TIGR01257 2154 IQHL 2157 (2272)
T ss_pred HHHH
Confidence 8776
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=338.91 Aligned_cols=176 Identities=36% Similarity=0.654 Sum_probs=157.6
Q ss_pred EEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~--~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++|++++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ... .+.++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~-~~~~i 77 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--EKA-LSSLI 77 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH--HHH-HHhhE
Confidence 5789999999764 799999999999999999999999999999999999999999999999876432 111 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+++ .|++||+ +.+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~-~tv~~~i-----------------------------------~~~LS~G~~qrv~laral~~------ 115 (178)
T cd03247 78 SVLNQRPYLFD-TTLRNNL-----------------------------------GRRFSGGERQRLALARILLQ------ 115 (178)
T ss_pred EEEccCCeeec-ccHHHhh-----------------------------------cccCCHHHHHHHHHHHHHhc------
Confidence 99999998886 6999987 78999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||++||+.++..++++|+++. ++ .|||++||+++++. .|||+++|++|++++.|
T Consensus 116 -~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~----------~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 -DAPIVLLDEPTVGLDPITERQLLSLIFEVL-KD----------KTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred -CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CC----------CEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 699999999999999999999999999985 44 59999999999986 69999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-47 Score=390.61 Aligned_cols=245 Identities=30% Similarity=0.428 Sum_probs=188.7
Q ss_pred hhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 018638 9 SLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDG 88 (352)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (352)
...+...+..++.++..+.... ........+.+|+......|+.....+ .+. ... ..+.
T Consensus 273 l~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~-----------~~~--~~~~-- 331 (529)
T TIGR02868 273 LAVLVLLPLAAFEAFAPLPAAA-----QALTRVRAAAERIEEVTGAKGPRPEGV-VPA-----------AGA--LGLG-- 331 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCCcCCCC-CCC-----------Ccc--cCCC--
Confidence 3334444445566666655555 566677888888888887664211100 000 000 0111
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 89 ~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
...|+++||+|+|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++... ... . +.
T Consensus 332 ~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~-l-r~ 408 (529)
T TIGR02868 332 KPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDE-L-RR 408 (529)
T ss_pred CceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHH-H-Hh
Confidence 123999999999975 5699999999999999999999999999999999999999999999999998765 332 2 34
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRva 236 (352)
+|+||||++.+|+. |++|||.++. ...+ ++++.++++.++++++.++.| ..||||||||++
T Consensus 409 ~i~~V~Q~~~lF~~-TI~eNI~~g~---~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 409 RISVFAQDAHLFDT-TVRDNLRLGR---PDAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred heEEEccCcccccc-cHHHHHhccC---CCCC----HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence 79999999999985 9999998853 1122 344778899999887666554 579999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl 303 (352)
|||||++ +|+|||||||||+||++++..+++.|.++.++ +|+|+|||++
T Consensus 481 iARall~-------~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~-----------~TvIiItHrl 529 (529)
T TIGR02868 481 LARALLA-------DAPILLLDEPTEHLDAGTESELLEDLLAALSG-----------KTVVVITHHL 529 (529)
T ss_pred HHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCC-----------CEEEEEecCC
Confidence 9999997 59999999999999999999999999986433 5999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=341.29 Aligned_cols=186 Identities=37% Similarity=0.597 Sum_probs=157.9
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCC--CC
Q 018638 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA--AL 178 (352)
Q Consensus 101 y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~--~l 178 (352)
|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+++|+||++ .+
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4567799999999999999999999999999999999999999999999999986421111111233699999998 35
Q ss_pred CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEe
Q 018638 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLD 258 (352)
|+ .||+||+.+..... +...++..+++.++++.+||.+..++++.+||||||||++|||||+. +|++||||
T Consensus 82 ~~-~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-------~p~llllD 152 (190)
T TIGR01166 82 FA-ADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAM-------RPDVLLLD 152 (190)
T ss_pred cc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhc-------CCCEEEEc
Confidence 54 79999998864322 23444555678899999999999999999999999999999999997 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 259 EPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
|||+|||+.++..+.++|++++++| .|||++|||+++
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~----------~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEG----------MTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeecccc
Confidence 9999999999999999999997766 599999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-48 Score=360.04 Aligned_cols=213 Identities=31% Similarity=0.519 Sum_probs=184.1
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--hhccceEEEEe
Q 018638 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGLRIGLVF 173 (352)
Q Consensus 96 nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~~~~~~ig~v~ 173 (352)
|+.+.+|+. +| +++|+.+.-.++||-|+||||||||+|+|+||.+|++|.|.+||+-+.+....- ...+++|||||
T Consensus 5 ~~~~~lG~~-~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVF 82 (352)
T COG4148 5 NFRQRLGNF-AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82 (352)
T ss_pred ehhhhcCce-EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEe
Confidence 455666654 33 799999987899999999999999999999999999999999998654321111 11234799999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
||..|||++||+.|+.|+.+.. .....+++.+.+|++++++|+|.+|||||||||||+|||+. .|+
T Consensus 83 QDARLFpH~tVrgNL~YG~~~~-------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt-------~P~ 148 (352)
T COG4148 83 QDARLFPHYTVRGNLRYGMWKS-------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLT-------APE 148 (352)
T ss_pred eccccccceEEecchhhhhccc-------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhc-------CCC
Confidence 9999999999999999987432 12336778899999999999999999999999999999997 599
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccccC
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~~ 333 (352)
+||||||.|+||...+++++-.|.+|+++-+ ..|++|||.++++.++||+|++|++|++.+.|..+++...
T Consensus 149 LLLmDEPLaSLD~~RK~EilpylERL~~e~~---------IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 149 LLLMDEPLASLDLPRKREILPYLERLRDEIN---------IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred eeeecCchhhcccchhhHHHHHHHHHHHhcC---------CCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 9999999999999999999999999998742 6899999999999999999999999999999999887643
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-47 Score=387.44 Aligned_cols=221 Identities=21% Similarity=0.372 Sum_probs=187.9
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+.++|+++|+++ .+|++|||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ......+.
T Consensus 265 ~~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~-~~~~~~~~ 338 (510)
T PRK15439 265 GAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAL-STAQRLAR 338 (510)
T ss_pred CCceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCC-CHHHHHhC
Confidence 356899999994 269999999999999999999999999999999999999999999999987543 22222234
Q ss_pred eEEEEecCC---CCCCCCCHHHHHHhhhhh-cC-CCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHH
Q 018638 168 RIGLVFQSA---ALFDSLTVRENVGFLLYE-NS-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 168 ~ig~v~Q~~---~l~~~lTV~eni~~~~~~-~~-~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+|+|+||++ .+|+.+|+.+|+...... .. .......++.+.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 699999985 478889999999643211 00 011223345678999999997 788999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|+||||||||+|||+.+++.+.++|++++++| .|||+||||++++.++|||+++|++|++
T Consensus 419 ~~-------~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~tiIivsHd~~~i~~~~d~i~~l~~G~i 481 (510)
T PRK15439 419 EA-------SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN----------VAVLFISSDLEEIEQMADRVLVMHQGEI 481 (510)
T ss_pred hh-------CCCEEEECCCCcCcChhHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 96 699999999999999999999999999998776 5999999999999999999999999999
Q ss_pred EEeecccccc
Q 018638 322 VWQGMTHEFT 331 (352)
Q Consensus 322 v~~g~~~~~~ 331 (352)
+..|+++++.
T Consensus 482 ~~~~~~~~~~ 491 (510)
T PRK15439 482 SGALTGAAIN 491 (510)
T ss_pred EEEEccccCC
Confidence 9999887764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=426.24 Aligned_cols=221 Identities=24% Similarity=0.395 Sum_probs=197.2
Q ss_pred CcceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 88 GDVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 88 ~~~~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
..+.|+++||+|.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. .... .
T Consensus 925 ~~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~--~~~~-~ 1001 (2272)
T TIGR01257 925 LVPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET--NLDA-V 1001 (2272)
T ss_pred CCceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc--hHHH-H
Confidence 346799999999995 5789999999999999999999999999999999999999999999999998753 1122 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
++++||+||++.+++.+||+||+.+..... +...++.++++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 1002 r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk-g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~-- 1078 (2272)
T TIGR01257 1002 RQSLGMCPQHNILFHHLTVAEHILFYAQLK-GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG-- 1078 (2272)
T ss_pred hhcEEEEecCCcCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc--
Confidence 346999999999999999999999875432 34445556778999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|+||||||||+|||+.+++.++++|++++ +| .|||++||+++++..+||||++|++|+++..|
T Consensus 1079 -----~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g----------~TIIltTHdmdea~~laDrI~iL~~GkL~~~G 1142 (2272)
T TIGR01257 1079 -----DAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SG----------RTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142 (2272)
T ss_pred -----CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CC----------CEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 699999999999999999999999999995 45 59999999999999999999999999999999
Q ss_pred ccccc
Q 018638 326 MTHEF 330 (352)
Q Consensus 326 ~~~~~ 330 (352)
++.++
T Consensus 1143 s~~~L 1147 (2272)
T TIGR01257 1143 TPLFL 1147 (2272)
T ss_pred CHHHH
Confidence 87665
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=387.31 Aligned_cols=255 Identities=27% Similarity=0.398 Sum_probs=198.6
Q ss_pred chhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 018638 8 GSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDD 87 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (352)
..+.+...+..++.++..+++.. ........+.+++.+.+..|+...... ... .+..
T Consensus 262 ~~~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~ll~~~~~~~~~~-----------------~~~-~~~~ 318 (529)
T TIGR02857 262 TGLFVLLLAPEFYLPLRQLGADY-----HARADGVAAAEALFAVLDAPRPLAGKA-----------------PVT-AAPA 318 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCcccCCCc-----------------CCC-CCCC
Confidence 33444444445566666665555 667778888889888876442111000 000 0111
Q ss_pred CcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 88 GDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
..|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|+++..... ...
T Consensus 319 --~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~-~~l- 394 (529)
T TIGR02857 319 --PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA-DSW- 394 (529)
T ss_pred --CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH-HHH-
Confidence 24999999999976 469999999999999999999999999999999999999999999999999876533 222
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKR 234 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGqrQR 234 (352)
+.+|+||+|++.+|+ .|++||+.++.. ..++ +++.++++.++++++.++. ..+||||||||
T Consensus 395 r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~---~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qr 466 (529)
T TIGR02857 395 RDQIAWVPQHPFLFA-GTIAENIRLARP---DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQR 466 (529)
T ss_pred HhheEEEcCCCcccC-cCHHHHHhccCC---CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHH
Confidence 346999999999997 599999988531 1222 3467788888887665554 36899999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
++|||||++ +|+++||||||++||+.+++.+++.+.++.+ + +|+|+|||+++.+. .||+|+
T Consensus 467 i~laRal~~-------~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-~----------~t~i~itH~~~~~~-~~d~i~ 527 (529)
T TIGR02857 467 LALARAFLR-------DAPLLLLDEPTAHLDAETEALVTEALRALAQ-G----------RTVLLVTHRLALAE-RADRIV 527 (529)
T ss_pred HHHHHHHhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHhcC-C----------CEEEEEecCHHHHH-hCCEEE
Confidence 999999997 5999999999999999999999999998853 3 59999999999986 589999
Q ss_pred EE
Q 018638 315 FL 316 (352)
Q Consensus 315 vL 316 (352)
+|
T Consensus 528 ~l 529 (529)
T TIGR02857 528 VL 529 (529)
T ss_pred eC
Confidence 86
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=424.28 Aligned_cols=224 Identities=24% Similarity=0.454 Sum_probs=187.6
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC------------------------
Q 018638 91 LIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP------------------------ 143 (352)
Q Consensus 91 ~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p------------------------ 143 (352)
-|+++||+|+|++ +++|+|+||+|++|+.+|||||||||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 3999999999963 4799999999999999999999999999999999999998
Q ss_pred ------------------------------CceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhh
Q 018638 144 ------------------------------DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (352)
Q Consensus 144 ------------------------------~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~ 193 (352)
++|+|++||.++..+.. ..+ +.+||||+|+|.||+ .|++|||.++..
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~-~~l-R~~i~~V~Qep~LF~-gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNL-KDL-RNLFSIVSQEPMLFN-MSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCH-HHH-HhhccEeCCCCcccc-ccHHHHHhcCCC
Confidence 69999999999876533 333 347999999999997 699999999631
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 194 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
..+ .+.+.++++.++++++....| ..||||||||++|||||++ +|+|||||||||
T Consensus 1322 ---~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr-------~p~ILLLDEaTS 1387 (1466)
T PTZ00265 1322 ---DAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLR-------EPKILLLDEATS 1387 (1466)
T ss_pred ---CCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhc-------CCCEEEEeCccc
Confidence 122 234778888888877665554 5799999999999999997 599999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC----CeEE-EeecccccccCCcH
Q 018638 263 GLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE----GKIV-WQGMTHEFTSSSNP 336 (352)
Q Consensus 263 gLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~----G~iv-~~g~~~~~~~~~~~ 336 (352)
+||+++++.+++.|.++.. ++ .|+|+|||+++.+.. ||+|++|++ |+++ +.|+.++++.....
T Consensus 1388 aLD~~sE~~I~~~L~~~~~~~~----------~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g 1456 (1466)
T PTZ00265 1388 SLDSNSEKLIEKTIVDIKDKAD----------KTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLSVQDG 1456 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhccCC----------CEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHhcCCC
Confidence 9999999999999999852 44 599999999999876 799999999 9955 89977777643333
Q ss_pred HHHHHh
Q 018638 337 IVQQFA 342 (352)
Q Consensus 337 ~~~~~~ 342 (352)
...+++
T Consensus 1457 ~Y~~l~ 1462 (1466)
T PTZ00265 1457 VYKKYV 1462 (1466)
T ss_pred hHHHHH
Confidence 444443
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=383.52 Aligned_cols=222 Identities=22% Similarity=0.356 Sum_probs=186.4
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+++|+++||++.| +.+|++|||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++... ......+..
T Consensus 248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~~~~~ 324 (491)
T PRK10982 248 EVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNH-NANEAINHG 324 (491)
T ss_pred CcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCC-CHHHHHHCC
Confidence 4689999999985 4699999999999999999999999999999999999999999999999987543 222222346
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhh-----hhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 169 IGLVFQSA---ALFDSLTVRENVGFL-----LYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 169 ig~v~Q~~---~l~~~lTV~eni~~~-----~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
++|+||++ .+|+.+|+.+|+.+. .............+.+.++++.+++. +..++++.+|||||||||+|||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 404 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGR 404 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHH
Confidence 99999985 478888888774332 11011112234456678899999995 5789999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|+||||||||+|||+.++..++++|+++.++| .|||++|||++++.++|||+++|++|
T Consensus 405 al~~-------~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~----------~tvi~vsHd~~~~~~~~d~v~~l~~g 467 (491)
T PRK10982 405 WLLT-------QPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD----------KGIIIISSEMPELLGITDRILVMSNG 467 (491)
T ss_pred HHhc-------CCCEEEEcCCCcccChhHHHHHHHHHHHHHHCC----------CEEEEECCChHHHHhhCCEEEEEECC
Confidence 9997 699999999999999999999999999998776 59999999999999999999999999
Q ss_pred eEEEeeccccc
Q 018638 320 KIVWQGMTHEF 330 (352)
Q Consensus 320 ~iv~~g~~~~~ 330 (352)
+++..++++++
T Consensus 468 ~i~~~~~~~~~ 478 (491)
T PRK10982 468 LVAGIVDTKTT 478 (491)
T ss_pred EEEEEEccccC
Confidence 99988876543
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=342.15 Aligned_cols=187 Identities=26% Similarity=0.425 Sum_probs=159.0
Q ss_pred EEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 92 IDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 92 l~~~nls~~y~~~-----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
|+++||+++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 5799999999764 699999999999999999999999999999999999999999999988
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-----------CCcccccCCCCCChHHHHHH
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-----------LKGVEDRLPSELSGGMKKRV 235 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g-----------L~~~~~~~~~~LSGGqrQRv 235 (352)
+|+|+||++.+|+ .|++||+.+... ...+. ..++++.++ ++...++.+.+||+|||||+
T Consensus 67 -~i~~~~q~~~l~~-~t~~enl~~~~~----~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv 136 (204)
T cd03250 67 -SIAYVSQEPWIQN-GTIRENILFGKP----FDEER----YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRI 136 (204)
T ss_pred -EEEEEecCchhcc-CcHHHHhccCCC----cCHHH----HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHH
Confidence 3899999999885 699999987532 11211 223333333 34445677899999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED-LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~-ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
+|||||+. +|+++||||||++||+.+++.+.+ +++++.+++ .|||++||+++.+.. ||+++
T Consensus 137 ~laral~~-------~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~----------~tvi~~sh~~~~~~~-~d~i~ 198 (204)
T cd03250 137 SLARAVYS-------DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN----------KTRILVTHQLQLLPH-ADQIV 198 (204)
T ss_pred HHHHHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCC----------CEEEEEeCCHHHHhh-CCEEE
Confidence 99999997 699999999999999999999988 566665555 599999999999998 99999
Q ss_pred EEeCCe
Q 018638 315 FLYEGK 320 (352)
Q Consensus 315 vL~~G~ 320 (352)
+|++|+
T Consensus 199 ~l~~G~ 204 (204)
T cd03250 199 VLDNGR 204 (204)
T ss_pred EEeCCC
Confidence 999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-46 Score=377.38 Aligned_cols=211 Identities=26% Similarity=0.392 Sum_probs=184.7
Q ss_pred cceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 89 DVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 89 ~~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
.+|++++||+++|++ +.+|++|||+|++|+++||+||||||||||+++|+|+++|++|+|+++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---------- 88 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------
Confidence 358999999999976 4699999999999999999999999999999999999999999999999641
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
++.+.+.+++.+|++||+.+..... +.+.++..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 89 -----~i~~~~~l~~~lTV~EnL~l~~~~~-~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~-- 160 (549)
T PRK13545 89 -----LIAISSGLNGQLTGIENIELKGLMM-GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHI-- 160 (549)
T ss_pred -----eEEeccccCCCCcHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHh--
Confidence 1222345667789999998754222 23445556677889999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||++||+.++..+.+.|++++++| .|||++|||++++..+||++++|++|++++.|
T Consensus 161 -----~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G----------~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G 225 (549)
T PRK13545 161 -----NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQG----------KTIFFISHSLSQVKSFCTKALWLHYGQVKEYG 225 (549)
T ss_pred -----CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 599999999999999999999999999997666 59999999999999999999999999999999
Q ss_pred ccccccc
Q 018638 326 MTHEFTS 332 (352)
Q Consensus 326 ~~~~~~~ 332 (352)
+++++..
T Consensus 226 ~~~el~~ 232 (549)
T PRK13545 226 DIKEVVD 232 (549)
T ss_pred CHHHHHh
Confidence 8877653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=423.28 Aligned_cols=214 Identities=27% Similarity=0.434 Sum_probs=185.4
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|+++||+++|+. +++|+||||+|++||.+||||+||||||||+++|.|+++|++|+|.+||.|+..... ... +.+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~-~~l-R~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL-TDL-RRV 1311 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCH-HHH-Hhh
Confidence 4999999999953 479999999999999999999999999999999999999999999999999876533 333 347
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaI 237 (352)
|+||||+|.+|+. |++|||.++. ..++ +++.++++.+++.++.++.| ..||||||||++|
T Consensus 1312 i~iVpQdp~LF~g-TIr~NL~~~~----~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaL 1382 (1495)
T PLN03232 1312 LSIIPQSPVLFSG-TVRFNIDPFS----EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382 (1495)
T ss_pred cEEECCCCeeeCc-cHHHHcCCCC----CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHH
Confidence 9999999999985 9999997631 1232 34677888888876655544 5899999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||++ +|+|||||||||+||+++.+.+++.|++..+ + +|+|+|+|+++++.. ||||+||+
T Consensus 1383 ARALLr-------~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~-~----------~TvI~IAHRl~ti~~-~DrIlVL~ 1443 (1495)
T PLN03232 1383 ARALLR-------RSKILVLDEATASVDVRTDSLIQRTIREEFK-S----------CTMLVIAHRLNTIID-CDKILVLS 1443 (1495)
T ss_pred HHHHHh-------CCCEEEEECCcccCCHHHHHHHHHHHHHHcC-C----------CEEEEEeCCHHHHHh-CCEEEEEE
Confidence 999997 5999999999999999999999999998754 3 599999999999987 69999999
Q ss_pred CCeEEEeecccccccCC
Q 018638 318 EGKIVWQGMTHEFTSSS 334 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~~ 334 (352)
+|+|++.|+++++....
T Consensus 1444 ~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1444 SGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred CCEEEEECCHHHHHhCC
Confidence 99999999998887543
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=363.11 Aligned_cols=200 Identities=37% Similarity=0.607 Sum_probs=174.7
Q ss_pred EEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHH
Q 018638 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE 201 (352)
Q Consensus 122 IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~ 201 (352)
|+||||||||||+|+|+|+++|++|+|+++|+++.... . . +++|+|+||++.+|+.+||+||+.|++... +....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~-~--~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-P-H--LRHINMVFQSYALFPHMTVEENVAFGLKMR-KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-H-H--HCCEEEEecCccccCCCcHHHHHHHHHhhc-CCCHH
Confidence 68999999999999999999999999999999875432 1 1 236999999999999999999999976322 23445
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 018638 202 QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK 281 (352)
Q Consensus 202 ~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~ 281 (352)
+..+++.++++.++|.++.++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.+.|+++.+
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~-------~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF-------KPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHh-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 556678899999999999999999999999999999999997 6999999999999999999999999999976
Q ss_pred c-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc-CCcHHHHHHhc
Q 018638 282 K-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 282 ~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
+ | .|+|+||||++++..+||||++|++|++++.|+++++.. +.+..+..|+.
T Consensus 149 ~~g----------~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 202 (325)
T TIGR01187 149 QLG----------ITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIG 202 (325)
T ss_pred hcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHhcC
Confidence 5 5 599999999999999999999999999999999988764 44566666654
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=384.97 Aligned_cols=208 Identities=29% Similarity=0.458 Sum_probs=179.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .+||
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i~ 67 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-------------ERLG 67 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------------CEEE
Confidence 589999999999888999999999999999999999999999999999999999999999872 1599
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhc----------CCC---------------------CHHHHHHHHHHHHHHcCCCcc
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYEN----------SKM---------------------RDEQISELVKENLAAVGLKGV 219 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~----------~~~---------------------~~~~~~~~v~~~l~~~gL~~~ 219 (352)
|++|++.+++.+||+||+.++.... ... ...+..+++.++++.+|+.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 9999999999999999998753100 000 001223567889999999764
Q ss_pred c-ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 018638 220 E-DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (352)
Q Consensus 220 ~-~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi 298 (352)
. ++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|.+ .+ .|||+
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~----------~tiii 207 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFS-------NPDILLLDEPTNNLDINTIRWLEDVLNE---RN----------STMII 207 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCcccCHHHHHHHHHHHHh---CC----------CeEEE
Confidence 4 57899999999999999999996 6999999999999999999999999863 34 49999
Q ss_pred EcCCHHHHHhhcCEEEEEeCCeE-EEeecccccc
Q 018638 299 VTHQHSTIRRAVDRLIFLYEGKI-VWQGMTHEFT 331 (352)
Q Consensus 299 vTHdl~~i~~~aDrv~vL~~G~i-v~~g~~~~~~ 331 (352)
||||++.+..+||+|++|++|++ ++.|+++++.
T Consensus 208 vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 208 ISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred EeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 99999999999999999999999 4788777654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=422.50 Aligned_cols=213 Identities=27% Similarity=0.432 Sum_probs=185.9
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|+++||+++|.+ .++|+||||+|++||.+||||+||||||||+++|.|+++|++|+|.|||.++.... .... |.+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~-l~~L-R~~ 1314 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFG-LMDL-RKV 1314 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCC-HHHH-Hhc
Confidence 4999999999964 46999999999999999999999999999999999999999999999999987653 3333 347
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaI 237 (352)
|++|||+|.+|+. |++|||.++- ..+ ++++.++++.+++.++.++.| ..||||||||++|
T Consensus 1315 IsiVpQdp~LF~G-TIreNLd~~~----~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaL 1385 (1622)
T PLN03130 1315 LGIIPQAPVLFSG-TVRFNLDPFN----EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSL 1385 (1622)
T ss_pred cEEECCCCccccc-cHHHHhCcCC----CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHH
Confidence 9999999999985 9999997632 122 344678888888877665554 5899999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||++ +|+|||||||||+||.++.+.+++.|++..+ + +|+|+|+|+++++.. ||||+||+
T Consensus 1386 ARALLr-------~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~----------~TvI~IAHRL~tI~~-~DrIlVLd 1446 (1622)
T PLN03130 1386 ARALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFK-S----------CTMLIIAHRLNTIID-CDRILVLD 1446 (1622)
T ss_pred HHHHHc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-C----------CEEEEEeCChHHHHh-CCEEEEEE
Confidence 999997 5999999999999999999999999998754 3 599999999999987 69999999
Q ss_pred CCeEEEeecccccccC
Q 018638 318 EGKIVWQGMTHEFTSS 333 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~ 333 (352)
+|+|++.|++++++..
T Consensus 1447 ~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1447 AGRVVEFDTPENLLSN 1462 (1622)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999888754
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-46 Score=383.32 Aligned_cols=274 Identities=22% Similarity=0.295 Sum_probs=209.7
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+....+.+...+..++.|+..++... ........+.+|+...+..+..+........ .. ..... +
T Consensus 266 t~g~l~a~~~~~~~l~~pi~~l~~~~-----~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~---~~-----~~~~~--~ 330 (555)
T TIGR01194 266 DAAAISAFVLALLYIKGPLEMLVSAL-----PILAQAQIACQRLADFGERFNEPEPELELSD---AD-----NVLLL--A 330 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhccccccccccc---cc-----ccccc--c
Confidence 44455566666677788888888877 7788888999999988754321100000000 00 00000 0
Q ss_pred CCCCcceEEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC
Q 018638 85 EDDGDVLIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~~-----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~ 159 (352)
+......|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 331 ~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 331 HDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS 410 (555)
T ss_pred cCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC
Confidence 00112349999999999752 5999999999999999999999999999999999999999999999999987643
Q ss_pred ChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC------CCCChHHHH
Q 018638 160 SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP------SELSGGMKK 233 (352)
Q Consensus 160 ~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~------~~LSGGqrQ 233 (352)
.... +.+++||+|++.+|+. |+++|+. +...++++.++++.++++++.++.| ..|||||||
T Consensus 411 -~~~~-~~~i~~v~q~~~lf~~-ti~~n~~----------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 -RDDY-RDLFSAIFADFHLFDD-LIGPDEG----------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred -HHHH-HhhCcEEccChhhhhh-hhhcccc----------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 2222 3369999999999974 8999841 1122345778999999988776655 469999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR-SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~-~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
|++|||||++ +|++|||||||++||+.+++.+.+.+. .+..++ .|+|+|||+++.+. .||+
T Consensus 478 RlalaRall~-------~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~----------~tiiiisH~~~~~~-~~d~ 539 (555)
T TIGR01194 478 RLALICAWLE-------DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQG----------KTIIIISHDDQYFE-LADQ 539 (555)
T ss_pred HHHHHHHHHc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeccHHHHH-hCCE
Confidence 9999999997 599999999999999999999988654 455555 59999999999765 6899
Q ss_pred EEEEeCCeEEEe
Q 018638 313 LIFLYEGKIVWQ 324 (352)
Q Consensus 313 v~vL~~G~iv~~ 324 (352)
|++|++|++++.
T Consensus 540 i~~l~~G~i~~~ 551 (555)
T TIGR01194 540 IIKLAAGCIVKD 551 (555)
T ss_pred EEEEECCEEEEe
Confidence 999999999865
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=381.64 Aligned_cols=221 Identities=26% Similarity=0.393 Sum_probs=181.7
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECCEeCCCCCChhhhcc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
..++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++........ .+
T Consensus 257 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~-~~ 335 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWD-IK 335 (490)
T ss_pred CCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHH-HH
Confidence 34689999999999988899999999999999999999999999999999998876 79999999986532111111 23
Q ss_pred ceEEEEecCCCCCC--CCCHHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHH
Q 018638 167 LRIGLVFQSAALFD--SLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~--~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+|||++|++.++. ..++.+++.++.... ......+..+++.++++.++|.+ ..++++.+|||||||||+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 36999999976543 246777665432110 00111233456889999999987 8899999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHh-hcCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR-AVDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~-~aDrv~vL~~G 319 (352)
|+. +|++|||||||+|||+.++..+.++|++++++++ .|||+||||++++.+ +||++++|++|
T Consensus 416 l~~-------~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~---------~tviivsHd~~~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 416 LVK-------HPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGE---------TQLLFVSHHAEDAPACITHRLEFVPDG 479 (490)
T ss_pred Hhc-------CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC---------cEEEEEecchhhhhhhhheeEEEecCC
Confidence 997 6999999999999999999999999999987652 479999999999987 59999999999
Q ss_pred eEEEee
Q 018638 320 KIVWQG 325 (352)
Q Consensus 320 ~iv~~g 325 (352)
+|++.-
T Consensus 480 ~i~~~~ 485 (490)
T PRK10938 480 DIYRYV 485 (490)
T ss_pred ceEEee
Confidence 998764
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=386.98 Aligned_cols=207 Identities=29% Similarity=0.431 Sum_probs=179.8
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+||+++||+++|+ ++.+|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. .+
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-------------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-------------IK 71 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------------CE
Confidence 5899999999998 788999999999999999999999999999999999999999999998641 15
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhc-------------CCCCH----------------------HHHHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYEN-------------SKMRD----------------------EQISELVKENLAA 213 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~-------------~~~~~----------------------~~~~~~v~~~l~~ 213 (352)
||||||++.+++.+||.||+.++.... ..... .+..+++.++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 999999999999999999998753210 00000 0123567889999
Q ss_pred cCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 018638 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (352)
Q Consensus 214 ~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~ 293 (352)
+|+.. .++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|+++. +
T Consensus 152 ~gl~~-~~~~~~~LSgGqkqrv~la~al~~-------~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~---------- 211 (556)
T PRK11819 152 LRCPP-WDAKVTKLSGGERRRVALCRLLLE-------KPDMLLLDEPTNHLDAESVAWLEQFLHDYP--G---------- 211 (556)
T ss_pred CCCCc-ccCchhhcCHHHHHHHHHHHHHhC-------CCCEEEEcCCCCcCChHHHHHHHHHHHhCC--C----------
Confidence 99964 789999999999999999999997 699999999999999999999999998762 2
Q ss_pred eEEEEEcCCHHHHHhhcCEEEEEeCCeEE-Eeeccccc
Q 018638 294 ASYVVVTHQHSTIRRAVDRLIFLYEGKIV-WQGMTHEF 330 (352)
Q Consensus 294 ~tvIivTHdl~~i~~~aDrv~vL~~G~iv-~~g~~~~~ 330 (352)
|||+||||++++..+||+|++|++|+++ +.|+.+++
T Consensus 212 -tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 212 -TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred -eEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 8999999999999999999999999986 77766654
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=386.31 Aligned_cols=223 Identities=30% Similarity=0.490 Sum_probs=195.9
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--
Q 018638 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-- 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-- 163 (352)
++|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++........
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 47999999999963 479999999999999999999999999999999999999999999999998765422221
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
..+++++|+||++.+|+.+|+.||+.+..... +....+..+++.++++.+||.+..++.+.+|||||+||++|||||+.
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA-GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 12346999999999999999999998865322 23444556678899999999999999999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.+++.+.++|+++++++ .|+|++||+++.+. .|||+++|++|++++
T Consensus 162 -------~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g----------~tilivsH~~~~~~-~~d~i~~l~~G~i~~ 223 (648)
T PRK10535 162 -------GGQVILADEPTGALDSHSGEEVMAILHQLRDRG----------HTVIIVTHDPQVAA-QAERVIEIRDGEIVR 223 (648)
T ss_pred -------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEECCCHHHHH-hCCEEEEEECCEEEe
Confidence 599999999999999999999999999998766 59999999999886 699999999999999
Q ss_pred eecccccc
Q 018638 324 QGMTHEFT 331 (352)
Q Consensus 324 ~g~~~~~~ 331 (352)
+|++++..
T Consensus 224 ~g~~~~~~ 231 (648)
T PRK10535 224 NPPAQEKV 231 (648)
T ss_pred ecCccccc
Confidence 99888764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=401.12 Aligned_cols=255 Identities=32% Similarity=0.464 Sum_probs=205.2
Q ss_pred hhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEEeCCe---eeeEeeeEE
Q 018638 37 FYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEK---HILRGVSFK 113 (352)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~y~~~---~~L~~vsl~ 113 (352)
-..+.+.+-..+..+...++.-.+.+... ...+.-.++ |+++||+|+|+.+ ++|+|+||+
T Consensus 950 d~~ka~~Aa~~iF~i~dr~~~i~~~~~~~---------------~~~~~~~G~--I~~~~V~F~YPsRP~~~Il~~l~l~ 1012 (1228)
T KOG0055|consen 950 DISKAKIAAGSIFEILDRKPTIDPDSTSG---------------GKLPNVKGD--IEFRNVSFAYPTRPDVPVLNNLSLS 1012 (1228)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCC---------------CccccceeE--EEEeeeEeeCCCCCCchhhcCCcEE
Confidence 44566667777777777776332222000 000122234 9999999999764 599999999
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~ 193 (352)
|++|+.+||||||||||||.+.+|-++++|++|.|.+||+|+..+. ..++ |++||.|.|+|.||. -|++|||.|+.
T Consensus 1013 i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ln-l~~L-R~~i~lVsQEP~LF~-~TIrENI~YG~- 1088 (1228)
T KOG0055|consen 1013 IRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLN-LKWL-RKQIGLVSQEPVLFN-GTIRENIAYGS- 1088 (1228)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCC-HHHH-HHhcceeccCchhhc-ccHHHHHhccC-
Confidence 9999999999999999999999999999999999999999998763 3444 447999999999997 59999999972
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 194 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
. ..+. +++.++++..+.+++....| .+||||||||+|||||+++ +|+||||||.||
T Consensus 1089 -~-~vs~----~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR-------nPkILLLDEATS 1155 (1228)
T KOG0055|consen 1089 -E-EVSE----EEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR-------NPKILLLDEATS 1155 (1228)
T ss_pred -C-CCCH----HHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc-------CCCeeeeeccch
Confidence 1 1333 34667788877766655554 6999999999999999998 599999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccccCCcHH
Q 018638 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPI 337 (352)
Q Consensus 263 gLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~~~~~~ 337 (352)
+||.++++.+++.|.+... | .|.|+|+|+++++.+ ||.|+|+++|+|+|+|+-++++.....+
T Consensus 1156 ALDseSErvVQeALd~a~~-g----------RT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~G~Y 1218 (1228)
T KOG0055|consen 1156 ALDSESERVVQEALDRAME-G----------RTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKRGIY 1218 (1228)
T ss_pred hhhhhhHHHHHHHHHHhhc-C----------CcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCCCch
Confidence 9999999999999999764 4 499999999999987 6999999999999999666676644333
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=419.95 Aligned_cols=276 Identities=24% Similarity=0.304 Sum_probs=211.1
Q ss_pred HHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEE
Q 018638 16 TKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCR 95 (352)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (352)
+..++.++..+.... ........+.+|+...+..|+........ . . ....-+..+ .|+++
T Consensus 1229 ~~~~~~~l~~l~~~~-----~~~e~~~~s~eRi~~~~~~~~e~~~~~~~------~------~-~~~~wp~~g--~I~f~ 1288 (1522)
T TIGR00957 1229 SLQVTFYLNWLVRMS-----SEMETNIVAVERLKEYSETEKEAPWQIQE------T------A-PPSGWPPRG--RVEFR 1288 (1522)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCCccccccC------C------C-CCCCCCCCC--cEEEE
Confidence 333444544444444 45566677788888888776422100000 0 0 000001122 39999
Q ss_pred eEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 96 NVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 96 nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
||+++|++ ..+|+||||+|++||.+||||+||||||||+++|.|+++|++|+|.+||.|+..... ... |.+|+|||
T Consensus 1289 nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~-~~L-R~~i~iVp 1366 (1522)
T TIGR00957 1289 NYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL-HDL-RFKITIIP 1366 (1522)
T ss_pred EEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCH-HHH-HhcCeEEC
Confidence 99999964 469999999999999999999999999999999999999999999999999977533 333 34799999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHh
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSII 242 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~ 242 (352)
|+|.+|+. |+++||... ...++ +++.++++.+++.++.++.| ..||||||||++|||||+
T Consensus 1367 Qdp~LF~g-TIr~NLdp~----~~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALL 1437 (1522)
T TIGR00957 1367 QDPVLFSG-SLRMNLDPF----SQYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALL 1437 (1522)
T ss_pred CCCcccCc-cHHHHcCcc----cCCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHH
Confidence 99999985 999999631 12333 34677888888866554443 579999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+ +|+|||||||||+||+++...+++.|++..++ +|+|+|+|+++.+.. ||||+||++|+|+
T Consensus 1438 r-------~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~-----------~TvI~IAHRl~ti~~-~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1438 R-------KTKILVLDEATAAVDLETDNLIQSTIRTQFED-----------CTVLTIAHRLNTIMD-YTRVIVLDKGEVA 1498 (1522)
T ss_pred c-------CCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-----------CEEEEEecCHHHHHh-CCEEEEEECCEEE
Confidence 7 59999999999999999999999999886543 599999999999987 5999999999999
Q ss_pred EeecccccccCCcHHHHHHh
Q 018638 323 WQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 323 ~~g~~~~~~~~~~~~~~~~~ 342 (352)
+.|++++++... ....+++
T Consensus 1499 E~G~~~eLl~~~-~~f~~l~ 1517 (1522)
T TIGR00957 1499 EFGAPSNLLQQR-GIFYSMA 1517 (1522)
T ss_pred EECCHHHHHhCC-CHHHHHH
Confidence 999998887543 3444444
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=324.48 Aligned_cols=162 Identities=32% Similarity=0.596 Sum_probs=147.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..+..+.+++|
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~-~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS-PRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC-HHHHHhcCeEE
Confidence 57899999999889999999999999999999999999999999999999999999999999875432 21222346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+|| ||||||||++|||||+. +
T Consensus 80 ~~q----------------------------------------------------LS~G~~qrl~laral~~-------~ 100 (163)
T cd03216 80 VYQ----------------------------------------------------LSVGERQMVEIARALAR-------N 100 (163)
T ss_pred EEe----------------------------------------------------cCHHHHHHHHHHHHHhc-------C
Confidence 999 99999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
|++|||||||++||+.+++.+.++|+++++++ .|+|++|||++++..+|||+++|++|++++
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQG----------VAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999997665 599999999999999999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=342.05 Aligned_cols=196 Identities=30% Similarity=0.485 Sum_probs=168.6
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCC--CCCHHHHHH
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD--SLTVRENVG 189 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~--~lTV~eni~ 189 (352)
|+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++. . .+.+++|+||++.+++ .+|+.+|+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~--~~~~i~~v~q~~~~~~~~~~tv~~~l~ 73 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----K--GWRHIGYVPQRHEFAWDFPISVAHTVM 73 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----H--hhCcEEEecccccccCCCCccHHHHHH
Confidence 578999999999999999999999999999999999999998642 1 1236999999987632 379999998
Q ss_pred hhhhhcCC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCH
Q 018638 190 FLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (352)
Q Consensus 190 ~~~~~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~ 266 (352)
++...... .......+++.++++.+++++..++++.+||||||||++|||||+. +|++|||||||++||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-------~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 74 SGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALAT-------RPSVLLLDEPFTGLDM 146 (223)
T ss_pred hccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhc-------CCCEEEEeCCcccCCH
Confidence 75321100 1122334568889999999999999999999999999999999997 6999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 267 ~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
.++..+.++|++++++| .|+|++|||++++.++||+++++ +|++++.|+++++..
T Consensus 147 ~~~~~l~~~l~~~~~~~----------~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 147 PTQELLTELFIELAGAG----------TAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 99999999999998766 59999999999999999999999 899999998888754
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-46 Score=391.06 Aligned_cols=215 Identities=30% Similarity=0.500 Sum_probs=187.8
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--ceEEEECCEeCCCCCChhhhccceEE
Q 018638 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--KGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 93 ~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~--~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
..+|++++|+++.+|+|||+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++.. . . ++++|
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~-~-~~~i~ 143 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----Q-I-LKRTG 143 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----h-h-ccceE
Confidence 3667889998889999999999999999999999999999999999999985 8999999998631 1 1 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHcCCCccc-----ccCCCCCChHHHHHHHHHHHHhc
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVE-----DRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~l~~~gL~~~~-----~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
||+|++.+++.+||+||+.+..... ...+.++..++++++++.+||.+.. ++.+.+|||||||||+|||+|+.
T Consensus 144 yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~ 223 (659)
T PLN03211 144 FVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 223 (659)
T ss_pred EECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh
Confidence 9999999999999999999865322 1234455567789999999997765 44678899999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHHhhcCEEEEEeCCeEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~~~aDrv~vL~~G~iv 322 (352)
+|+||||||||+|||+.++..+.+.|++++++| .|||++||+++ .+.+++|++++|++|+++
T Consensus 224 -------~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g----------~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 224 -------NPSLLILDEPTSGLDATAAYRLVLTLGSLAQKG----------KTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred -------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCC----------CEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 599999999999999999999999999998776 59999999998 588999999999999999
Q ss_pred Eeeccccc
Q 018638 323 WQGMTHEF 330 (352)
Q Consensus 323 ~~g~~~~~ 330 (352)
..|+++++
T Consensus 287 ~~G~~~~~ 294 (659)
T PLN03211 287 FFGKGSDA 294 (659)
T ss_pred EECCHHHH
Confidence 99988765
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=329.30 Aligned_cols=169 Identities=41% Similarity=0.686 Sum_probs=152.1
Q ss_pred EEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~--~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++|++++|+++ .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++.... ... .+.++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i 78 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD-LES-LRKNI 78 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC-HHH-HHhhE
Confidence 4789999999875 7999999999999999999999999999999999999999999999999865432 222 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+|+ .|++||+ ||||||||++|||||+.
T Consensus 79 ~~~~~~~~~~~-~t~~e~l--------------------------------------LS~G~~~rl~la~al~~------ 113 (171)
T cd03228 79 AYVPQDPFLFS-GTIRENI--------------------------------------LSGGQRQRIAIARALLR------ 113 (171)
T ss_pred EEEcCCchhcc-chHHHHh--------------------------------------hCHHHHHHHHHHHHHhc------
Confidence 99999998887 6999987 99999999999999996
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+|++|||||||++||+.++..+.++|+++.+ + .|+|++|||++++.. ||++++|++|+
T Consensus 114 -~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 114 -DPPILILDEATSALDPETEALILEALRALAK-G----------KTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred -CCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-C----------CEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 6999999999999999999999999999854 4 599999999999987 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=381.86 Aligned_cols=204 Identities=24% Similarity=0.388 Sum_probs=179.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
..+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ .+
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-------------~~ 383 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-------------AN 383 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-------------eE
Confidence 46899999999999888999999999999999999999999999999999999999999999873 15
Q ss_pred EEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 169 IGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 169 ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+||++|++. +++.+|+++|+.+.. . .. ...+++.++++.+|+. +..++++.+|||||||||+|||||+.
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~-- 455 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWR--Q--EG--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ-- 455 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhc--c--CC--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhc--
Confidence 999999974 556789999986521 1 11 1134578899999994 68899999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE-Ee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV-WQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv-~~ 324 (352)
+|++|||||||++||+.++..+.+.|+++ . .|||+||||++++..+|||+++|++|+++ +.
T Consensus 456 -----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~-----------~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~ 517 (530)
T PRK15064 456 -----KPNVLVMDEPTNHMDMESIESLNMALEKY--E-----------GTLIFVSHDREFVSSLATRIIEITPDGVVDFS 517 (530)
T ss_pred -----CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--C-----------CEEEEEeCCHHHHHHhCCEEEEEECCeEEEcC
Confidence 69999999999999999999999999876 2 38999999999999999999999999998 77
Q ss_pred ecccccc
Q 018638 325 GMTHEFT 331 (352)
Q Consensus 325 g~~~~~~ 331 (352)
|++.++.
T Consensus 518 g~~~~~~ 524 (530)
T PRK15064 518 GTYEEYL 524 (530)
T ss_pred CCHHHHH
Confidence 8776654
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=335.44 Aligned_cols=236 Identities=31% Similarity=0.519 Sum_probs=209.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC-EeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG-RKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G-~~~~~~~~~~~~~~~~ 168 (352)
+.|+++||+++||+..+|+++||+|.+||.-+|||||||||||++.+|+|-.+|+.|+|+|+| .++..+ ...++.+..
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~-~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKL-PEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccC-CHHHHHHhc
Confidence 579999999999999999999999999999999999999999999999999999999999999 787765 445566668
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCC-------CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKM-------RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~-------~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
||--||.|..|+.+||+||+.+.....+.. ...+.+++++++|+..||.+..++....||.||||++.|++-+
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll 162 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL 162 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence 999999999999999999998876432211 1233356799999999999999999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
++ +|++||||||++|+-.......-++|+.++.. .+|++|.|||.++..+|++|-||+.|.+
T Consensus 163 ~Q-------~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~-----------hsilVVEHDM~Fvr~~A~~VTVlh~G~V 224 (249)
T COG4674 163 AQ-------DPKLLLLDEPVAGMTDAETEKTAELLKSLAGK-----------HSILVVEHDMGFVREIADKVTVLHEGSV 224 (249)
T ss_pred cc-------CCcEEEecCccCCCcHHHHHHHHHHHHHHhcC-----------ceEEEEeccHHHHHHhhheeEEEeccce
Confidence 97 59999999999999999999999999999875 4999999999999999999999999999
Q ss_pred EEeecccccccCCcHHHHHHhcCCC
Q 018638 322 VWQGMTHEFTSSSNPIVQQFASGSL 346 (352)
Q Consensus 322 v~~g~~~~~~~~~~~~~~~~~~~~~ 346 (352)
..+|+..++. .+|.+.+.|.|..
T Consensus 225 L~EGsld~v~--~dp~ViEvYLGr~ 247 (249)
T COG4674 225 LAEGSLDEVQ--NDPKVIEVYLGRK 247 (249)
T ss_pred eecccHHHhh--cCcceEeeecccC
Confidence 9999988875 3466666665543
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=337.31 Aligned_cols=201 Identities=23% Similarity=0.347 Sum_probs=163.9
Q ss_pred EEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hhhccceE
Q 018638 93 DCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLRI 169 (352)
Q Consensus 93 ~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~~~~~~i 169 (352)
.+.|+.++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ....+..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5789999997 46799999999999999999999999999999999999999999999999876432110 11123469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-----------cccCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-----------EDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~~~~LSGGqrQRvaIA 238 (352)
+|++|++.+|+ .|++||+.+... ...+ ...++++.+++.+. .++++.+|||||||||+||
T Consensus 82 ~~~~q~~~~~~-~t~~~nl~~~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03290 82 AYAAQKPWLLN-ATVEENITFGSP----FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA 152 (218)
T ss_pred EEEcCCCcccc-ccHHHHHhhcCc----CCHH----HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence 99999998885 799999987531 1221 22345555555432 3567899999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED--LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~--ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||+. +|++|||||||++||+.++..+++ +++.+++++ .|+|++||+++.+. .||++++|
T Consensus 153 ral~~-------~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~----------~tii~~sH~~~~~~-~~d~i~~l 214 (218)
T cd03290 153 RALYQ-------NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDK----------RTLVLVTHKLQYLP-HADWIIAM 214 (218)
T ss_pred HHHhh-------CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCC----------CEEEEEeCChHHHh-hCCEEEEe
Confidence 99997 699999999999999999999998 666665555 59999999999986 69999999
Q ss_pred eCCe
Q 018638 317 YEGK 320 (352)
Q Consensus 317 ~~G~ 320 (352)
++|.
T Consensus 215 ~~G~ 218 (218)
T cd03290 215 KDGS 218 (218)
T ss_pred cCCC
Confidence 9884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-45 Score=375.98 Aligned_cols=252 Identities=22% Similarity=0.271 Sum_probs=194.9
Q ss_pred hhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEE
Q 018638 19 VSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVY 98 (352)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls 98 (352)
+..|+..++... ........+.+|+.+....|....... . .+. +....|+++||+
T Consensus 275 ~~~pl~~l~~~~-----~~~~~~~~a~~ri~~l~~~~~~~~~~~----~---------------~~~-~~~~~i~~~~v~ 329 (547)
T PRK10522 275 LRTPLLSAVGAL-----PTLLSAQVAFNKLNKLALAPYKAEFPR----P---------------QAF-PDWQTLELRNVT 329 (547)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcccccccccc----c---------------ccc-CcCceEEEEEEE
Confidence 345666655555 456677778888887755443111000 0 000 011249999999
Q ss_pred EEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCC
Q 018638 99 KSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177 (352)
Q Consensus 99 ~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~ 177 (352)
|+|++ +++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+|+||+|++.
T Consensus 330 f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i~~v~q~~~ 407 (547)
T PRK10522 330 FAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ-PEDY-RKLFSAVFTDFH 407 (547)
T ss_pred EEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCC-HHHH-hhheEEEecChh
Confidence 99965 56999999999999999999999999999999999999999999999999986543 2222 347999999999
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----CCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----PSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 178 l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
+|+ .|+++| + .. ..++.+.++++.+++....+.. ..+||||||||++|||||++ +|
T Consensus 408 lf~-~ti~~n---~----~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~-------~~ 468 (547)
T PRK10522 408 LFD-QLLGPE---G----KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE-------ER 468 (547)
T ss_pred HHH-Hhhccc---c----Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc-------CC
Confidence 997 588888 1 01 1234567888999987654322 35899999999999999997 59
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
++|||||||++||+.++..+.+.+.++.+ ++ .|+|+|||+++.+. .||+|++|++|++++....
T Consensus 469 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~----------~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~ 533 (547)
T PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMG----------KTIFAISHDDHYFI-HADRLLEMRNGQLSELTGE 533 (547)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEEechHHHH-hCCEEEEEECCEEEEecCC
Confidence 99999999999999999999999887644 34 59999999998765 6899999999999987533
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=413.28 Aligned_cols=223 Identities=27% Similarity=0.417 Sum_probs=188.6
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|+++||+++|++ ..+|+||||+|++||.+||||+||||||||+++|.|+++|++|+|++||.|+..+. .... +.+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~-l~~L-R~~ 1385 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG-LREL-RRQ 1385 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCC-HHHH-Hhc
Confidence 4999999999964 45999999999999999999999999999999999999999999999999987653 3333 347
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaI 237 (352)
||||||+|.||+. ||++||... ...++ +++.++++.++++++....| ..||||||||++|
T Consensus 1386 I~iVpQdp~LF~g-TIreNIdp~----~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaL 1456 (1560)
T PTZ00243 1386 FSMIPQDPVLFDG-TVRQNVDPF----LEASS----AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCM 1456 (1560)
T ss_pred ceEECCCCccccc-cHHHHhCcc----cCCCH----HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHH
Confidence 9999999999985 999999642 11232 45788899999877655443 5799999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+++ +|+|||||||||+||+++.+.+++.|++..++ +|+|+|+|+++.+.. ||+|+||+
T Consensus 1457 ARALL~~------~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~-----------~TvI~IAHRl~ti~~-~DrIlVLd 1518 (1560)
T PTZ00243 1457 ARALLKK------GSGFILMDEATANIDPALDRQIQATVMSAFSA-----------YTVITIAHRLHTVAQ-YDKIIVMD 1518 (1560)
T ss_pred HHHHhcC------CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCC-----------CEEEEEeccHHHHHh-CCEEEEEE
Confidence 9999962 38999999999999999999999999986443 599999999999986 69999999
Q ss_pred CCeEEEeecccccccCCcHHHHHHh
Q 018638 318 EGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
+|+|++.|+++++....+....+++
T Consensus 1519 ~G~VvE~Gt~~eLl~~~~~~f~~l~ 1543 (1560)
T PTZ00243 1519 HGAVAEMGSPRELVMNRQSIFHSMV 1543 (1560)
T ss_pred CCEEEEECCHHHHHhCCCCHHHHHH
Confidence 9999999999998754343444444
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=379.84 Aligned_cols=208 Identities=29% Similarity=0.421 Sum_probs=178.0
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.||+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-------------~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-------------IK 69 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------------CE
Confidence 5799999999998 778999999999999999999999999999999999999999999998741 25
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcC-------------CCCHHH----------------------HHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENS-------------KMRDEQ----------------------ISELVKENLAA 213 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~-------------~~~~~~----------------------~~~~v~~~l~~ 213 (352)
||||||++.+++.+||+||+.+++.... .....+ ..+++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 9999999999999999999987542100 000010 12456678888
Q ss_pred cCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 018638 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (352)
Q Consensus 214 ~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~ 293 (352)
+|+.. .++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|+++ .
T Consensus 150 ~~l~~-~~~~~~~LSgGqkqrv~la~al~~-------~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~----------- 208 (552)
T TIGR03719 150 LRCPP-WDADVTKLSGGERRRVALCRLLLS-------KPDMLLLDEPTNHLDAESVAWLEQHLQEY--P----------- 208 (552)
T ss_pred CCCCc-ccCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCCCCChHHHHHHHHHHHhC--C-----------
Confidence 88854 688999999999999999999996 69999999999999999999999998875 2
Q ss_pred eEEEEEcCCHHHHHhhcCEEEEEeCCeEE-Eeecccccc
Q 018638 294 ASYVVVTHQHSTIRRAVDRLIFLYEGKIV-WQGMTHEFT 331 (352)
Q Consensus 294 ~tvIivTHdl~~i~~~aDrv~vL~~G~iv-~~g~~~~~~ 331 (352)
.|||+||||++.+..+||+|++|++|+++ ..|+.+++.
T Consensus 209 ~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 209 GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred CeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 28999999999999999999999999975 678776643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=330.96 Aligned_cols=192 Identities=23% Similarity=0.335 Sum_probs=166.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++|++++|+++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++... . ...++
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----~--~~~~~ 73 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI----A--KPYCT 73 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh----h--hhhEE
Confidence 588999999998766665 9999999999999999999999999999999999999999999876431 1 22589
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|++|++.+++.+||+||+.+....+. ..+++.++++.+++.+..++.+.+||||||||++||||++.
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~------- 140 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYN------SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIAC------- 140 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcc------cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhc-------
Confidence 99999887778999999988543211 13356788999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
+|+++||||||++||+.++..+.++|++..+++ .|+|++||+++.+.. +|-|
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSG----------GIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCccccch-hhee
Confidence 599999999999999999999999998776555 599999999999887 4654
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=344.30 Aligned_cols=210 Identities=25% Similarity=0.389 Sum_probs=171.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
....|+++|+++. ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------------- 98 (282)
T cd03291 36 DDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------------- 98 (282)
T ss_pred CCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------------
Confidence 3456999999985 46799999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-----------ccccCCCCCChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-----------VEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~~~~~~LSGGqrQRva 236 (352)
+|+|++|++.+++. ||+||+.+... .... .+.++++.+++.+ ..++.+.+||||||||++
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~----~~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~ 169 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVS----YDEY----RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARIS 169 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhcccc----cCHH----HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHH
Confidence 28999999998874 99999987531 1111 1233444445433 233456799999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll-~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
|||||+. +|++|||||||++||+.++..+.+.+ +++. ++ .|||++||+++.+. .||++++
T Consensus 170 lAraL~~-------~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~----------~tIiiisH~~~~~~-~~d~i~~ 230 (282)
T cd03291 170 LARAVYK-------DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-AN----------KTRILVTSKMEHLK-KADKILI 230 (282)
T ss_pred HHHHHhc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CC----------CEEEEEeCChHHHH-hCCEEEE
Confidence 9999997 69999999999999999999998754 5554 34 49999999999985 7999999
Q ss_pred EeCCeEEEeecccccccCCcHHHHHHh
Q 018638 316 LYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|++|+++..|++.++.....+....++
T Consensus 231 l~~G~i~~~g~~~~~~~~~~~~~~~~~ 257 (282)
T cd03291 231 LHEGSSYFYGTFSELQSLRPDFSSKLM 257 (282)
T ss_pred EECCEEEEECCHHHHHhcchHHHHHHh
Confidence 999999999988887654344444443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=327.12 Aligned_cols=209 Identities=32% Similarity=0.506 Sum_probs=183.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
.++++++.+.-++.++|+++||++.+||+++|+||||||||||+|+++-|..|++|+++|.|++++.+..+. .+.+|+
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea--~Rq~Vs 80 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA--YRQQVS 80 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHH--HHHHHH
Confidence 467777777778889999999999999999999999999999999999999999999999999988764333 345799
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+.|.|.||+. ||++|+.|+...+..... ..+..++++++++. ..+++.+.+||||||||++|+|-|..
T Consensus 81 Y~~Q~paLfg~-tVeDNlifP~~~r~rr~d---r~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~------ 150 (223)
T COG4619 81 YCAQTPALFGD-TVEDNLIFPWQIRNRRPD---RAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQF------ 150 (223)
T ss_pred HHHcCcccccc-chhhccccchHHhccCCC---hHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhc------
Confidence 99999999985 999999998754332222 23467889999996 47899999999999999999999986
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
-|+|||||||||+||+.+++.+.++|.++.++.. ..+++||||.+++.+++|+++-+..|++
T Consensus 151 -~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~---------vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 151 -MPKILLLDEITSALDESNKRNIEEMIHRYVREQN---------VAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred -CCceEEecCchhhcChhhHHHHHHHHHHHhhhhc---------eEEEEEecChHHHhhhhheEEEeccCcc
Confidence 5999999999999999999999999999874321 6999999999999999999999999986
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=374.00 Aligned_cols=208 Identities=30% Similarity=0.473 Sum_probs=178.8
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~------------~~ 388 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T------------VK 388 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c------------eE
Confidence 4689999999999988999999999999999999999999999999999999999999999853 1 15
Q ss_pred EEEEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 169 IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 169 ig~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
|||+||++ .+++.+||+||+.++..... .... ...+.++++.+++.. ..++++.+|||||||||+|||||+.
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~--- 462 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIK-VGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQ--- 462 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccc-cccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhc---
Confidence 99999997 77888999999988642111 1111 123457899999964 6799999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC-CeEE-Ee
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE-GKIV-WQ 324 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~-G~iv-~~ 324 (352)
+|++|||||||+|||+.++..+.++|.++ .+ |||+||||++++..+||||++|++ |++. ..
T Consensus 463 ----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-----------tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~ 525 (556)
T PRK11819 463 ----GGNVLLLDEPTNDLDVETLRALEEALLEF--PG-----------CAVVISHDRWFLDRIATHILAFEGDSQVEWFE 525 (556)
T ss_pred ----CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-----------eEEEEECCHHHHHHhCCEEEEEECCCeEEEec
Confidence 69999999999999999999999999886 23 799999999999999999999986 7876 46
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+..++.+
T Consensus 526 g~~~~~~~ 533 (556)
T PRK11819 526 GNFQEYEE 533 (556)
T ss_pred CCHHHHHH
Confidence 76666543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=407.10 Aligned_cols=243 Identities=26% Similarity=0.397 Sum_probs=190.1
Q ss_pred hhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeEE
Q 018638 37 FYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSFK 113 (352)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~y~~---~~~L~~vsl~ 113 (352)
...+...+.+++......++....... . .. .+... .|+++||+|+|++ +++|+|+||+
T Consensus 347 ~~~~a~~a~~ri~~ii~~~~~~~~~~~------~--------~~---~~~~~--~I~~~nVsf~Y~~~~~~~vL~~isl~ 407 (1466)
T PTZ00265 347 EYMKSLEATNSLYEIINRKPLVENNDD------G--------KK---LKDIK--KIQFKNVRFHYDTRKDVEIYKDLNFT 407 (1466)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCC------C--------cc---CCCCC--cEEEEEEEEEcCCCCCCceeccceEE
Confidence 455677788888888776643211000 0 00 11111 4999999999975 3699999999
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE-CCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI-RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i-~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
|++||++||+||||||||||+++|+|+++|++|+|++ +|.++... ...+. +.+||||+|++.+|+ .||+|||.++.
T Consensus 408 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~-~~~~l-r~~Ig~V~Q~~~LF~-~TI~eNI~~g~ 484 (1466)
T PTZ00265 408 LTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI-NLKWW-RSKIGVVSQDPLLFS-NSIKNNIKYSL 484 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC-CHHHH-HHhccEecccccchh-ccHHHHHHhcC
Confidence 9999999999999999999999999999999999999 56776543 22332 346999999999998 59999999864
Q ss_pred hhcCC---------C-----------------------------------------CHHHHHHHHHHHHHHcCCCccc--
Q 018638 193 YENSK---------M-----------------------------------------RDEQISELVKENLAAVGLKGVE-- 220 (352)
Q Consensus 193 ~~~~~---------~-----------------------------------------~~~~~~~~v~~~l~~~gL~~~~-- 220 (352)
..... . ......+.+.++++.++++++.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~ 564 (1466)
T PTZ00265 485 YSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSA 564 (1466)
T ss_pred CCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHh
Confidence 21000 0 0011235578888888887664
Q ss_pred ---------ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCC
Q 018638 221 ---------DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANP 290 (352)
Q Consensus 221 ---------~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~ 290 (352)
.+.+.+|||||||||+|||||++ +|+||||||||++||+.++..+++.|+++++ +|
T Consensus 565 lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~-------~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g------- 630 (1466)
T PTZ00265 565 LPDKYETLVGSNASKLSGGQKQRISIARAIIR-------NPKILILDEATSSLDNKSEYLVQKTINNLKGNEN------- 630 (1466)
T ss_pred CccccCceeCCCCCcCCHHHHHHHHHHHHHhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCC-------
Confidence 34567999999999999999997 5999999999999999999999999999975 35
Q ss_pred CCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 291 GNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 291 ~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
.|+|+|||+++++. .||+|++|++|
T Consensus 631 ---~TvIiIsHrls~i~-~aD~Iivl~~g 655 (1466)
T PTZ00265 631 ---RITIIIAHRLSTIR-YANTIFVLSNR 655 (1466)
T ss_pred ---CEEEEEeCCHHHHH-hCCEEEEEeCC
Confidence 59999999999985 79999999986
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=319.25 Aligned_cols=162 Identities=29% Similarity=0.437 Sum_probs=146.7
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+++
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-------------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-------------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-------------ceEE
Confidence 47899999996 467999999999999999999999999999999999999999999999863 2699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|++|++.++ ..|++||+.+. .+.+||||||||++|||||+.
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~-------------------------------~~~~LS~G~~~rv~laral~~------- 108 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP-------------------------------WDDVLSGGEQQRLAFARLLLH------- 108 (166)
T ss_pred EECCCCccc-cccHHHHhhcc-------------------------------CCCCCCHHHHHHHHHHHHHHc-------
Confidence 999999876 47999999652 468999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
+|+++||||||++||+.++..+.++|+++ + .|+|++|||++.+ .+||++++|+++
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~----------~tiiivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL---G----------ITVISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh---C----------CEEEEEeCChhHH-hhCCEEEEEcCC
Confidence 69999999999999999999999999876 3 4999999999875 589999999876
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=373.41 Aligned_cols=207 Identities=31% Similarity=0.492 Sum_probs=177.4
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|++++ + .
T Consensus 319 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~------------~ 385 (552)
T TIGR03719 319 GDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T------------V 385 (552)
T ss_pred CCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c------------e
Confidence 34689999999999988899999999999999999999999999999999999999999999843 1 1
Q ss_pred eEEEEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 168 RIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 168 ~ig~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+|||+||++ .+++.+||.||+.++..... .... ...+.++++.+|+.. ..++++.+|||||||||+|||||+.
T Consensus 386 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~-- 460 (552)
T TIGR03719 386 KLAYVDQSRDALDPNKTVWEEISGGLDIIQ-LGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS-- 460 (552)
T ss_pred EEEEEeCCccccCCCCcHHHHHHhhccccc-cCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh--
Confidence 599999997 47888999999988642111 1111 123557899999964 6799999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC-CeEE-E
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE-GKIV-W 323 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~-G~iv-~ 323 (352)
+|++|||||||++||+.++..+.++|+++. + |||+||||++++..+||||++|++ |+++ +
T Consensus 461 -----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-----------~viivsHd~~~~~~~~d~i~~l~~~~~~~~~ 522 (552)
T TIGR03719 461 -----GGNVLLLDEPTNDLDVETLRALEEALLEFA--G-----------CAVVISHDRWFLDRIATHILAFEGDSHVEWF 522 (552)
T ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-----------eEEEEeCCHHHHHHhCCEEEEEECCCeEEEe
Confidence 699999999999999999999999999872 3 799999999999999999999986 5876 5
Q ss_pred eeccccc
Q 018638 324 QGMTHEF 330 (352)
Q Consensus 324 ~g~~~~~ 330 (352)
.|+..++
T Consensus 523 ~g~~~~~ 529 (552)
T TIGR03719 523 EGNYSEY 529 (552)
T ss_pred CCCHHHH
Confidence 5655444
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-45 Score=321.51 Aligned_cols=238 Identities=31% Similarity=0.524 Sum_probs=210.5
Q ss_pred ceEEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC
Q 018638 90 VLIDCRNVYKSFGE---------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 90 ~~l~~~nls~~y~~---------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~ 160 (352)
+.++++|++|+|.. ..+++.|||++++|+.+||||.||||||||.|+|+|.++|++|+|.|||+.+.. .
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~--~ 80 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHF--G 80 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccc--c
Confidence 46899999999842 358999999999999999999999999999999999999999999999998643 2
Q ss_pred hhhhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CcccccCCCCCChHHHHHHHH
Q 018638 161 DEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL-~~~~~~~~~~LSGGqrQRvaI 237 (352)
+...+.++|-++||+| .+.|.+.+.+-+..++.....+..++..+++.+.|+.+|| .+..+-+|..||-||||||||
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaL 160 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVAL 160 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHH
Confidence 2333445799999998 4677888888888888777677778888899999999999 468899999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
||||+- +|+|+|.||..++||...+.++.+++.+|.++ | .+.|+|+.++..+..++|.|+||
T Consensus 161 ARALIL-------~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~G----------iSyiYV~QhlG~iKHi~D~viVM 223 (267)
T COG4167 161 ARALIL-------RPKIIIADEALASLDMSMRSQLINLMLELQEKQG----------ISYIYVTQHIGMIKHISDQVLVM 223 (267)
T ss_pred HHHHhc-------CCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhC----------ceEEEEechhhHhhhhcccEEEE
Confidence 999995 69999999999999999999999999999876 4 69999999999999999999999
Q ss_pred eCCeEEEeecccccc-cCCcHHHHHHhcCCC
Q 018638 317 YEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 346 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~-~~~~~~~~~~~~~~~ 346 (352)
++|++++.|++++++ .+.++.++.+++...
T Consensus 224 ~EG~vvE~G~t~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 224 HEGEVVERGSTADVLASPLHELTKRLIESHF 254 (267)
T ss_pred ecCceeecCChhhhhcCCccHHHHHHHHHHh
Confidence 999999999999976 567888888876543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=373.02 Aligned_cols=200 Identities=30% Similarity=0.392 Sum_probs=177.9
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+.++|+++|++++|++. .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ +
T Consensus 337 ~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~------------ 400 (590)
T PRK13409 337 RETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L------------ 400 (590)
T ss_pred CceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e------------
Confidence 45689999999999875 4999999999999999999999999999999999999999999985 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|+|+||++.+++.+||+||+.++... ... ...+.++++.++|.+..++++.+|||||||||+|||||+.
T Consensus 401 ~i~y~~Q~~~~~~~~tv~e~l~~~~~~---~~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~---- 470 (590)
T PRK13409 401 KISYKPQYIKPDYDGTVEDLLRSITDD---LGS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR---- 470 (590)
T ss_pred eEEEecccccCCCCCcHHHHHHHHhhh---cCh---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhc----
Confidence 489999999888889999999875321 111 1246789999999989999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..+.++|++++++ | .|||+||||++++..+|||+++|++ ++...|.
T Consensus 471 ---~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 471 ---DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEERE----------ATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred ---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 69999999999999999999999999999765 4 5999999999999999999999964 8887775
Q ss_pred c
Q 018638 327 T 327 (352)
Q Consensus 327 ~ 327 (352)
.
T Consensus 537 ~ 537 (590)
T PRK13409 537 A 537 (590)
T ss_pred c
Confidence 3
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=376.74 Aligned_cols=203 Identities=27% Similarity=0.497 Sum_probs=177.7
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+.++|+++||++.|+++.+|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+++. .
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~ 375 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-------------I 375 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-------------E
Confidence 456899999999999989999999999999999999999999999999999999999999999631 1
Q ss_pred eEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 168 RIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 168 ~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
+|||++|+. .+.+..|+.+++... . .....+.+.++|+.+++. +..++++++|||||||||+|||+|+.
T Consensus 376 ~igy~~Q~~~~~l~~~~~~~~~~~~~---~----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~- 447 (638)
T PRK10636 376 KLGYFAQHQLEFLRADESPLQHLARL---A----PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQ- 447 (638)
T ss_pred EEEEecCcchhhCCccchHHHHHHHh---C----chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhc-
Confidence 599999975 455667888876421 1 112245678899999996 47899999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE-E
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV-W 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv-~ 323 (352)
+|++|||||||++||+.++..+.++|.++ .| |||+||||++++..+||||++|++|+++ .
T Consensus 448 ------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-----------tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~ 508 (638)
T PRK10636 448 ------RPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-----------ALVVVSHDRHLLRSTTDDLYLVHDGKVEPF 508 (638)
T ss_pred ------CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-----------eEEEEeCCHHHHHHhCCEEEEEECCEEEEc
Confidence 69999999999999999999999999987 33 8999999999999999999999999997 7
Q ss_pred eeccccc
Q 018638 324 QGMTHEF 330 (352)
Q Consensus 324 ~g~~~~~ 330 (352)
.|+.+++
T Consensus 509 ~g~~~~~ 515 (638)
T PRK10636 509 DGDLEDY 515 (638)
T ss_pred CCCHHHH
Confidence 7877766
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=336.20 Aligned_cols=180 Identities=28% Similarity=0.400 Sum_probs=155.7
Q ss_pred eeeEeeeEEEe-----CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCC
Q 018638 105 HILRGVSFKIR-----HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179 (352)
Q Consensus 105 ~~L~~vsl~i~-----~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~ 179 (352)
..+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.++|+ +|+|++|++.++
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--------------~i~~~~q~~~~~ 73 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--------------TVSYKPQYIKAD 73 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--------------eEEEecccccCC
Confidence 35666666665 79999999999999999999999999999999999873 489999998876
Q ss_pred CCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeC
Q 018638 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259 (352)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDE 259 (352)
+.+||+||+.+...... .. ...+.++++.+++.+..++.+.+|||||||||+|||||+. +|+++||||
T Consensus 74 ~~~tv~e~l~~~~~~~~--~~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~-------~p~llllDE 141 (246)
T cd03237 74 YEGTVRDLLSSITKDFY--TH---PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSK-------DADIYLLDE 141 (246)
T ss_pred CCCCHHHHHHHHhhhcc--cc---HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc-------CCCEEEEeC
Confidence 67899999976432111 11 1235678999999988999999999999999999999997 699999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 260 PTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 260 PtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
||++||+.++..+.++|++++++ + .|||+||||++++..+||+|++|+++.
T Consensus 142 Pt~~LD~~~~~~l~~~l~~~~~~~~----------~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 142 PSAYLDVEQRLMASKVIRRFAENNE----------KTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999764 4 599999999999999999999997653
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=339.66 Aligned_cols=204 Identities=28% Similarity=0.437 Sum_probs=172.6
Q ss_pred EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE-----------ECCEeCCCCCChh
Q 018638 95 RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDE 162 (352)
Q Consensus 95 ~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~-----------i~G~~~~~~~~~~ 162 (352)
.||+|+|+.+ .+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|+ ++|+++.... ..
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~-~~ 81 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYF-TK 81 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhh-HH
Confidence 4789999865 59999995 999999999999999999999999999999999996 7787754321 11
Q ss_pred hhc-cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 163 EIS-GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 163 ~~~-~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
... ...++|++|.+.+++ .++.+++.+.+ ......+.+.++++.+|+.+..++.+.+||||||||++|||||
T Consensus 82 ~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l------~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 154 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIP-KAVKGKVGELL------KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAAL 154 (255)
T ss_pred hhhcccceeeecchhccCc-hHHHHHHHHHh------chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 111 124899999998888 48888887643 1223345678999999999889999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|+++||||||++||+.++..+.++|+++++++ .|||++|||++.+..+||+|++|+ |++
T Consensus 155 ~~-------~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~----------~tIIiiSHd~~~~~~~ad~i~~l~-~~~ 216 (255)
T cd03236 155 AR-------DADFYFFDEPSSYLDIKQRLNAARLIRELAEDD----------NYVLVVEHDLAVLDYLSDYIHCLY-GEP 216 (255)
T ss_pred Hh-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEEEEEC-CCC
Confidence 97 599999999999999999999999999998765 599999999999999999999995 667
Q ss_pred EEee
Q 018638 322 VWQG 325 (352)
Q Consensus 322 v~~g 325 (352)
++.|
T Consensus 217 ~~~~ 220 (255)
T cd03236 217 GAYG 220 (255)
T ss_pred Ccce
Confidence 6554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=357.39 Aligned_cols=264 Identities=28% Similarity=0.471 Sum_probs=211.7
Q ss_pred HHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEE
Q 018638 14 LATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLID 93 (352)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (352)
+.+.....|++.+-..+ ...-.++.+-+|+......-+.....-.. |.+.+ .|.
T Consensus 283 Il~gRaLaPid~aI~~W-----kq~~~Ar~s~~Rl~~lL~~~p~~~~~m~L-------------------P~P~g--~L~ 336 (580)
T COG4618 283 ILSGRALAPIDLAIANW-----KQFVAARQSYKRLNELLAELPAAAERMPL-------------------PAPQG--ALS 336 (580)
T ss_pred HHhhhhhccHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCccccCCCCC-------------------CCCCc--eee
Confidence 33445567777654445 46667788888888877664422211111 22223 499
Q ss_pred EEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 94 CRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 94 ~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
+++|++.=++ +++|+++||++.+||.+|||||||||||||.|+|.|.++|.+|.|++||-++..+..+. ..++|||
T Consensus 337 Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~--lG~hiGY 414 (580)
T COG4618 337 VERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ--LGRHIGY 414 (580)
T ss_pred EeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH--hccccCc
Confidence 9999986543 57999999999999999999999999999999999999999999999999987764332 3458999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHH
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARS 240 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArA 240 (352)
+||+..||+. ||.|||+-.- ...+ .+.+-++.+..|.+++.-+.| ..||||||||++||||
T Consensus 415 LPQdVeLF~G-TIaeNIaRf~---~~~d----~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 415 LPQDVELFDG-TIAENIARFG---EEAD----PEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARA 486 (580)
T ss_pred CcccceecCC-cHHHHHHhcc---ccCC----HHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHH
Confidence 9999999985 9999996421 1122 234667777788777766665 6899999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|.. +|.+++||||-|+||.+.+..+.+.|.+++++| .|+|+|||+.+.+.. +|+|++|++|+
T Consensus 487 lYG-------~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG----------~~vvviaHRPs~L~~-~Dkilvl~~G~ 548 (580)
T COG4618 487 LYG-------DPFLVVLDEPNSNLDSEGEAALAAAILAAKARG----------GTVVVIAHRPSALAS-VDKILVLQDGR 548 (580)
T ss_pred HcC-------CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHhh-cceeeeecCCh
Confidence 997 599999999999999999999999999999887 599999999998764 69999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
+...|+.+|+.
T Consensus 549 ~~~FG~r~eVL 559 (580)
T COG4618 549 IAAFGPREEVL 559 (580)
T ss_pred HHhcCCHHHHH
Confidence 99999877764
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=373.18 Aligned_cols=208 Identities=26% Similarity=0.389 Sum_probs=178.2
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+..+|+++||+++|+++.+|+++||+|.+|+++||+||||||||||+|+|+|+++|++|+|++ |.++
T Consensus 315 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------- 382 (635)
T PRK11147 315 SGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------- 382 (635)
T ss_pred CCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-----------
Confidence 3457899999999999888999999999999999999999999999999999999999999998 4321
Q ss_pred ceEEEEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 167 LRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 167 ~~ig~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
+|||++|++ .+++.+||.||+.++.... ... .....+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 383 -~i~y~~q~~~~l~~~~tv~e~l~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~- 457 (635)
T PRK11147 383 -EVAYFDQHRAELDPEKTVMDNLAEGKQEV-MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK- 457 (635)
T ss_pred -EEEEEeCcccccCCCCCHHHHHHhhcccc-ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc-
Confidence 599999986 5888899999998753211 011 1134577889999996 57899999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe-CCeEEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY-EGKIVW 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~-~G~iv~ 323 (352)
+|++|||||||++||+.++..+.++|+++ . .|||+||||.+++..+||++++|+ +|+++.
T Consensus 458 ------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~-----------~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 458 ------PSNLLILDEPTNDLDVETLELLEELLDSY--Q-----------GTVLLVSHDRQFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred ------CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--C-----------CeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence 69999999999999999999999999876 3 389999999999999999999998 899866
Q ss_pred e-eccccc
Q 018638 324 Q-GMTHEF 330 (352)
Q Consensus 324 ~-g~~~~~ 330 (352)
. |+-.++
T Consensus 519 ~~g~y~~y 526 (635)
T PRK11147 519 YVGGYHDA 526 (635)
T ss_pred ccCCHHHH
Confidence 4 444444
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=398.08 Aligned_cols=221 Identities=25% Similarity=0.455 Sum_probs=187.3
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|+++||+++|+. ..+|+||||+|++||.+||+|+||||||||+++|+|+++ ++|+|+|||.++..... ... +.+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~-~~l-R~~ 1293 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTL-QTW-RKA 1293 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCH-HHH-Hhc
Confidence 4999999999963 679999999999999999999999999999999999997 79999999999876532 222 347
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaI 237 (352)
|+||||+|.+|+. ||++||... ...+ ++++.++|+.++|.++..+.| ..||||||||++|
T Consensus 1294 is~IpQdp~LF~G-TIR~NLdp~----~~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~L 1364 (1490)
T TIGR01271 1294 FGVIPQKVFIFSG-TFRKNLDPY----EQWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCL 1364 (1490)
T ss_pred eEEEeCCCccCcc-CHHHHhCcc----cCCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHH
Confidence 9999999999985 999999542 1122 345778899999877665554 3799999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||++ +|+|||||||||+||+.+...+++.|++..++ +|||+|||+++.+.. ||||++|+
T Consensus 1365 ARALLr-------~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~-----------~TvI~IaHRl~ti~~-~DrIlvL~ 1425 (1490)
T TIGR01271 1365 ARSILS-------KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSN-----------CTVILSEHRVEALLE-CQQFLVIE 1425 (1490)
T ss_pred HHHHhC-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCC-----------CEEEEEecCHHHHHh-CCEEEEEE
Confidence 999997 59999999999999999999999999986543 599999999999987 69999999
Q ss_pred CCeEEEeecccccccCCcHHHHHHhc
Q 018638 318 EGKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
+|+|++.|+++++... +....+++.
T Consensus 1426 ~G~ivE~g~p~~Ll~~-~~~f~~l~~ 1450 (1490)
T TIGR01271 1426 GSSVKQYDSIQKLLNE-TSLFKQAMS 1450 (1490)
T ss_pred CCEEEEeCCHHHHHcC-CcHHHHHHH
Confidence 9999999999888753 334444444
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=323.25 Aligned_cols=189 Identities=21% Similarity=0.283 Sum_probs=159.7
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE-ECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~-i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+ .+.+.+.+++.+|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~---------------~~~~~~~l~~~lt 65 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL---------------PLGANSFILPGLT 65 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee---------------ccccccccCCcCc
Confidence 379999999999999999999999999999999999999999997 776431 1224567888999
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
++||+.+....+. ...++.. ..+.+.+++....++++.+||||||||++|||||+. +|+++||||||++
T Consensus 66 v~enl~~~~~~~~-~~~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~-------~p~llllDEP~~~ 134 (213)
T PRK15177 66 GEENARMMASLYG-LDGDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLL-------PCRLYIADGKLYT 134 (213)
T ss_pred HHHHHHHHHHHcC-CCHHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhc-------CCCEEEECCCCcc
Confidence 9999998654332 3333322 234466788888899999999999999999999997 6999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 264 LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|+.++..+.+.+.+..++ .|+|++||+++++..+||++++|++|++++.++.++.
T Consensus 135 lD~~~~~~~~~~l~~~~~~-----------~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 135 GDNATQLRMQAALACQLQQ-----------KGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred CCHHHHHHHHHHHHHHhhC-----------CcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence 9999999999988664443 3799999999999999999999999999999977665
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=325.01 Aligned_cols=223 Identities=30% Similarity=0.426 Sum_probs=190.6
Q ss_pred CCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 86 DDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
...+++|+++||+++|+++++|+|+|++|++||..+|+|||||||||||++++|.++|++|.+.+.|+.........+ .
T Consensus 26 ~~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~e-l 104 (257)
T COG1119 26 EINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFE-L 104 (257)
T ss_pred CCCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHH-H
Confidence 345678999999999999999999999999999999999999999999999999999999999999998654322122 3
Q ss_pred cceEEEEecC--CCCCCCCCHHHHHHhhhhhcCC----CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHH
Q 018638 166 GLRIGLVFQS--AALFDSLTVRENVGFLLYENSK----MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 166 ~~~ig~v~Q~--~~l~~~lTV~eni~~~~~~~~~----~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIAr 239 (352)
+++||||.-. ..+.+..+|+|-+.-+.+...+ ...++..+++..+++.+|+.+..+++..+||-||||||.|||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHH
Confidence 4579999753 3344567898888765532211 123445677889999999999999999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
||++ +|++|||||||+|||...++.+.+.|.++... +. .++|+|||..+++....++++.+++
T Consensus 185 ALv~-------~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~---------~~ll~VtHh~eEi~~~~th~lll~~ 248 (257)
T COG1119 185 ALVK-------DPELLILDEPAQGLDLIAREQLLNRLEELAASPGA---------PALLFVTHHAEEIPPCFTHRLLLKE 248 (257)
T ss_pred HHhc-------CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCC---------ceEEEEEcchhhcccccceEEEeeC
Confidence 9997 59999999999999999999999999999754 21 5899999999999999999999999
Q ss_pred CeEEEee
Q 018638 319 GKIVWQG 325 (352)
Q Consensus 319 G~iv~~g 325 (352)
|+++.+|
T Consensus 249 g~v~~~g 255 (257)
T COG1119 249 GEVVAQG 255 (257)
T ss_pred Cceeecc
Confidence 9999887
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=368.25 Aligned_cols=206 Identities=25% Similarity=0.377 Sum_probs=170.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+|+|+++.+|+||||+|.+|+++||+||||||||||||+|+|+++|++|+|.++|.. +|+
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-------------~i~ 67 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-------------QLA 67 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-------------EEE
Confidence 5899999999999999999999999999999999999999999999999999999999998731 478
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhh-----------------------c---CCCCHHHHHHHHHHHHHHcCCC-cccccC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYE-----------------------N---SKMRDEQISELVKENLAAVGLK-GVEDRL 223 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~-----------------------~---~~~~~~~~~~~v~~~l~~~gL~-~~~~~~ 223 (352)
|++|++..+. .|+.+++...... . ......+...++.++++.+|+. +..+++
T Consensus 68 ~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 8888654332 4665554311000 0 0000112345688899999997 578999
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH
Q 018638 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (352)
Q Consensus 224 ~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl 303 (352)
+.+|||||||||+|||||+. +|+||||||||++||+.++..+.+.|+++ + .|||+||||+
T Consensus 147 ~~~LSgGerqRv~LA~aL~~-------~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~----------~tviivsHd~ 206 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALIC-------RSDLLLLDEPTNHLDLDAVIWLEKWLKSY---Q----------GTLILISHDR 206 (638)
T ss_pred hhhcCHHHHHHHHHHHHHcc-------CCCEEEEcCCCCcCCHHHHHHHHHHHHhC---C----------CeEEEEeCCH
Confidence 99999999999999999996 69999999999999999999999998775 2 3899999999
Q ss_pred HHHHhhcCEEEEEeCCeEE-Eeeccccc
Q 018638 304 STIRRAVDRLIFLYEGKIV-WQGMTHEF 330 (352)
Q Consensus 304 ~~i~~~aDrv~vL~~G~iv-~~g~~~~~ 330 (352)
+++..+||+|++|++|+++ ..|+.+.+
T Consensus 207 ~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 207 DFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 9999999999999999996 45655544
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=390.38 Aligned_cols=219 Identities=26% Similarity=0.440 Sum_probs=190.9
Q ss_pred CcceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC---CCceEEEECCEeCCCCCC
Q 018638 88 GDVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 88 ~~~~l~~~nls~~y~----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~---p~~G~I~i~G~~~~~~~~ 160 (352)
+..+|+++||+++|+ ++.+|+|||++|++||++||+|||||||||||++|+|+.+ |++|+|++||+++..
T Consensus 756 ~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--- 832 (1394)
T TIGR00956 756 GEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--- 832 (1394)
T ss_pred CCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---
Confidence 345799999999995 4679999999999999999999999999999999999998 789999999998631
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC--CCCHHHHHHHHHHHHHHcCCCcccccCCC----CCChHHHHH
Q 018638 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGVEDRLPS----ELSGGMKKR 234 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~l~~~gL~~~~~~~~~----~LSGGqrQR 234 (352)
.. ++++|||+|++.+++.+||+||+.|....+. ..+.++..++++++++.+||.+..++.++ +||||||||
T Consensus 833 --~~-~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqR 909 (1394)
T TIGR00956 833 --SF-QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKR 909 (1394)
T ss_pred --hh-hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhH
Confidence 12 3369999999888888999999998754321 23445556788999999999998898887 799999999
Q ss_pred HHHHHHHhccCCCCCCCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH-HHhhcCE
Q 018638 235 VALARSIIFDNTKESVEPE-VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST-IRRAVDR 312 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~-llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~-i~~~aDr 312 (352)
|+|||+|+. +|+ ||||||||+|||+.++..+++.|++++++| .|||+++|+++. +.+.+|+
T Consensus 910 l~Ia~aL~~-------~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g----------~tvI~t~H~~~~~~~~~~D~ 972 (1394)
T TIGR00956 910 LTIGVELVA-------KPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHG----------QAILCTIHQPSAILFEEFDR 972 (1394)
T ss_pred HHHHHHHHc-------CCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC----------CEEEEEecCCCHHHHHhcCE
Confidence 999999997 597 999999999999999999999999998776 599999999986 4577999
Q ss_pred EEEEeCC-eEEEeecccc
Q 018638 313 LIFLYEG-KIVWQGMTHE 329 (352)
Q Consensus 313 v~vL~~G-~iv~~g~~~~ 329 (352)
+++|++| ++++.|++.+
T Consensus 973 vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 973 LLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred EEEEcCCCEEEEECCccc
Confidence 9999997 9999997643
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=310.65 Aligned_cols=242 Identities=31% Similarity=0.485 Sum_probs=195.7
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE-----eCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR-----KRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~-----~~~~~~~~~~ 163 (352)
.|.+++++++|.||.....++|||++.+||+.||+|+|||||||||+||++-+.|+.|+|.+.-. ++......++
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 36799999999999999999999999999999999999999999999999999999999998643 2222222211
Q ss_pred --hccceEEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHH
Q 018638 164 --ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 164 --~~~~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIA 238 (352)
..+-..|||.|+|. |-...+..-||..-+..........+.+.+.++|+++.++ ...+..|.++|||||||+.||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiA 163 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHH
Confidence 11224899999983 3333344455533221111111234556678899999996 578999999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|-|+. .|+++++||||.|||...+..++++++.|..+-. .++|+||||+..+.-++||.++|++
T Consensus 164 RnLVt-------~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~---------la~viVTHDl~VarLla~rlmvmk~ 227 (258)
T COG4107 164 RNLVT-------RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG---------LAVVIVTHDLAVARLLADRLMVMKQ 227 (258)
T ss_pred HHhcc-------CCceEEecCCCCCcchhhHHHHHHHHHHHHHhcC---------ceEEEEechhHHHHHhhhcceeecC
Confidence 99996 6999999999999999999999999999987631 6899999999999999999999999
Q ss_pred CeEEEeecccccc-cCCcHHHHHHhcCCC
Q 018638 319 GKIVWQGMTHEFT-SSSNPIVQQFASGSL 346 (352)
Q Consensus 319 G~iv~~g~~~~~~-~~~~~~~~~~~~~~~ 346 (352)
|++++.|-+..++ .+.+|+++-+.+..+
T Consensus 228 g~vve~GLTDrvLDDP~hPYTQLLVSsvL 256 (258)
T COG4107 228 GQVVESGLTDRVLDDPHHPYTQLLVSSVL 256 (258)
T ss_pred CCEeccccccccccCCCCchHHHHHHHhc
Confidence 9999999888866 567899988876544
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=366.44 Aligned_cols=207 Identities=29% Similarity=0.482 Sum_probs=182.1
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 102 ~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
+++.+|+|||++|++||+++|+|||||||||||++|+|..+|. +|+|.++|+++.. ... ++.+|||+|++.+
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~----~~~-~~~i~yv~Q~~~~ 110 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA----KEM-RAISAYVQQDDLF 110 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH----HHH-hhhceeecccccc
Confidence 3567999999999999999999999999999999999999885 8999999998631 222 3369999999999
Q ss_pred CCCCCHHHHHHhhhhhcC--CCCHHHHHHHHHHHHHHcCCCcccccCCC------CCChHHHHHHHHHHHHhccCCCCCC
Q 018638 179 FDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGVEDRLPS------ELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~l~~~gL~~~~~~~~~------~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
++.+||+|||.|+..... ..+.++..++++++++.+||.+..+..++ .|||||||||+|||+|+.
T Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~------- 183 (617)
T TIGR00955 111 IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT------- 183 (617)
T ss_pred CccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc-------
Confidence 999999999999764321 23455667789999999999988888876 599999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++++|||||+|||+.+...+++.|++++++| .|||+++|+++ .+.+++|++++|++|++++.|++++
T Consensus 184 ~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g----------~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~ 253 (617)
T TIGR00955 184 DPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG----------KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ 253 (617)
T ss_pred CCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCC----------CEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHH
Confidence 599999999999999999999999999998766 59999999995 7888999999999999999998876
Q ss_pred c
Q 018638 330 F 330 (352)
Q Consensus 330 ~ 330 (352)
+
T Consensus 254 ~ 254 (617)
T TIGR00955 254 A 254 (617)
T ss_pred H
Confidence 5
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=315.53 Aligned_cols=221 Identities=32% Similarity=0.448 Sum_probs=186.0
Q ss_pred eEEEEeEEEEeC-----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFG-----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~-----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
|+.+.|+.+.|. .+++|+++||+|++|+++.|||.||||||||+++|+|-+.|++|+|.|+|.++......+ +
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~--R 78 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK--R 78 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHH--H
Confidence 567888888884 367999999999999999999999999999999999999999999999999997653322 2
Q ss_pred cceEEEEecCC--CCCCCCCHHHHHHhhhhhc--CCCCH---HHHHHHHHHHHHHc--CCCcccccCCCCCChHHHHHHH
Q 018638 166 GLRIGLVFQSA--ALFDSLTVRENVGFLLYEN--SKMRD---EQISELVKENLAAV--GLKGVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 166 ~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~--~~~~~---~~~~~~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRva 236 (352)
...++-|||+| ..++.+||+||+++...+. ++... ....+...+.++.+ ||++.++.++.-|||||||-++
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals 158 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence 33589999998 5699999999998865431 12221 22233345556665 4578899999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|+.|.++ .|+||+|||-|++|||.....++++=.++.++.+ .|.+||||+|+.+.+|.+|.++|
T Consensus 159 L~MAtl~-------~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~k---------lTtlMVTHnm~~Al~yG~RlImL 222 (263)
T COG1101 159 LLMATLH-------PPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK---------LTTLMVTHNMEDALDYGNRLIML 222 (263)
T ss_pred HHHHhcC-------CCcEEEecchhhcCCcchHHHHHHHHHHHHHhcC---------CceEEEeccHHHHHhhCCeEEEE
Confidence 9999997 6999999999999999999999999999987754 69999999999999999999999
Q ss_pred eCCeEEEeecccc
Q 018638 317 YEGKIVWQGMTHE 329 (352)
Q Consensus 317 ~~G~iv~~g~~~~ 329 (352)
++|+|+.+-.-++
T Consensus 223 h~G~IvlDv~g~~ 235 (263)
T COG1101 223 HSGKIVLDVTGEE 235 (263)
T ss_pred eCCeEEEEccccc
Confidence 9999998764433
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=363.67 Aligned_cols=202 Identities=28% Similarity=0.475 Sum_probs=170.1
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 89 ~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.++|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|++++. .
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-------------~ 572 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-------------V 572 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-------------e
Confidence 468999999999964 56999999999999999999999999999999999999999999998642 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhh-cCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYE-NSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~-~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+|||++|++. +.+++.+|..+.... ..... .+.+.++|+.+|+. +..++++.+|||||||||+|||||+.
T Consensus 573 ~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~-- 644 (718)
T PLN03073 573 RMAVFSQHHV--DGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-- 644 (718)
T ss_pred eEEEEecccc--ccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc--
Confidence 5999999862 345666665432211 11112 34578899999997 47899999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE-Ee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV-WQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv-~~ 324 (352)
+|++|||||||++||+.++..+.+.|.++ ++ |||+||||++++..+|||+++|++|+++ +.
T Consensus 645 -----~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-----------tvIivSHd~~~i~~~~drv~~l~~G~i~~~~ 706 (718)
T PLN03073 645 -----KPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-----------GVLMVSHDEHLISGSVDELWVVSEGKVTPFH 706 (718)
T ss_pred -----CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-----------EEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 69999999999999999999988877664 33 8999999999999999999999999998 56
Q ss_pred ecccc
Q 018638 325 GMTHE 329 (352)
Q Consensus 325 g~~~~ 329 (352)
|+..+
T Consensus 707 g~~~~ 711 (718)
T PLN03073 707 GTFHD 711 (718)
T ss_pred CCHHH
Confidence 75544
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=362.17 Aligned_cols=193 Identities=23% Similarity=0.299 Sum_probs=163.2
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-------------~~~ 516 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-------------KGK 516 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-------------CCc
Confidence 3699999999995 56799999999999999999999999999999999999999999998753 125
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC---------CCCChHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP---------SELSGGMKKRVALAR 239 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~---------~~LSGGqrQRvaIAr 239 (352)
++||||++.+++. |++||+.++.............+++.++++.++++++.+++. .+||||||||++|||
T Consensus 517 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR 595 (659)
T TIGR00954 517 LFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR 595 (659)
T ss_pred EEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence 9999999999986 999999886421100001111345778899999987776643 799999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||++ +|+++||||||++||+.++..+.+.+++. | .|+|+|||+++.+ +.||++++|+
T Consensus 596 al~~-------~p~illLDEpts~LD~~~~~~l~~~l~~~---~----------~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 596 LFYH-------KPQFAILDECTSAVSVDVEGYMYRLCREF---G----------ITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred HHHc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHc---C----------CEEEEEeCchHHH-HhCCEEEEEe
Confidence 9997 69999999999999999999999988763 4 5999999999987 5689999996
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=361.23 Aligned_cols=205 Identities=30% Similarity=0.430 Sum_probs=167.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-------------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-------------IVA 69 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-------------EEE
Confidence 6999999999999899999999999999999999999999999999999999999999998631 266
Q ss_pred EEecCCCCCCCCCHHHHHHhhh------------------------------hh---cCCCCHHHHHHHHHHHHHHcCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLL------------------------------YE---NSKMRDEQISELVKENLAAVGLK 217 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~------------------------------~~---~~~~~~~~~~~~v~~~l~~~gL~ 217 (352)
|++|++......+|.+++..+. .. ...........++.++++.+|+.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 7777653322345655542110 00 00000112345678899999996
Q ss_pred cccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEE
Q 018638 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297 (352)
Q Consensus 218 ~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvI 297 (352)
.++++.+|||||||||+|||||+. +|+||||||||++||+.++..+.++|+++. + |||
T Consensus 150 --~~~~~~~LSgGekqRv~LAraL~~-------~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~-----------tvl 207 (635)
T PRK11147 150 --PDAALSSLSGGWLRKAALGRALVS-------NPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--G-----------SII 207 (635)
T ss_pred --CCCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCCccCHHHHHHHHHHHHhCC--C-----------EEE
Confidence 388999999999999999999997 699999999999999999999999998872 2 899
Q ss_pred EEcCCHHHHHhhcCEEEEEeCCeEEE-eeccccc
Q 018638 298 VVTHQHSTIRRAVDRLIFLYEGKIVW-QGMTHEF 330 (352)
Q Consensus 298 ivTHdl~~i~~~aDrv~vL~~G~iv~-~g~~~~~ 330 (352)
+||||.+++..+||+|++|++|+++. .|+..++
T Consensus 208 ivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 208 FISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 99999999999999999999999974 5766554
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=347.23 Aligned_cols=214 Identities=29% Similarity=0.492 Sum_probs=181.6
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
-|+++||+|.|+ ++++|+||||++.+|+.+|||||||+||||++|+|.++.+.++|.|.|||+|+....... .|..|
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~S--LRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSS--LRSSI 614 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHH--HHHhc
Confidence 399999999995 688999999999999999999999999999999999999999999999999986432111 23479
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIA 238 (352)
|.||||..||++ |+..||.|+. ...+. +++.++.+..++++..-..| -.||||||||||||
T Consensus 615 GVVPQDtvLFNd-TI~yNIryak---~~Asn----eevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 615 GVVPQDTVLFND-TILYNIRYAK---PSASN----EEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred CcccCcceeecc-eeeeheeecC---CCCCh----HHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 999999999985 9999998853 11223 33555566666655444333 48999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|++++ .|.+++|||.||+||..+++.++..|.++... .|-|+|.|+++++-+ ||.|+++++
T Consensus 687 RtiLK-------~P~iIlLDEATSALDT~tER~IQaaL~rlca~-----------RTtIVvAHRLSTivn-AD~ILvi~~ 747 (790)
T KOG0056|consen 687 RTILK-------APSIILLDEATSALDTNTERAIQAALARLCAN-----------RTTIVVAHRLSTIVN-ADLILVISN 747 (790)
T ss_pred HHHhc-------CCcEEEEcchhhhcCCccHHHHHHHHHHHhcC-----------CceEEEeeeehheec-ccEEEEEeC
Confidence 99998 49999999999999999999999999999875 388999999999987 699999999
Q ss_pred CeEEEeecccccccC
Q 018638 319 GKIVWQGMTHEFTSS 333 (352)
Q Consensus 319 G~iv~~g~~~~~~~~ 333 (352)
|+|++.|.-+|+...
T Consensus 748 G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 748 GRIVERGRHEELLKR 762 (790)
T ss_pred CeEeecCcHHHHHhc
Confidence 999999976676544
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=295.87 Aligned_cols=144 Identities=38% Similarity=0.648 Sum_probs=135.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|++..+|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+ ..++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-------------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-------------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-------------EEEEE
Confidence 47899999998888999999999999999999999999999999999999999999999984 15999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+|| ||+||+||++|||||+. +
T Consensus 68 ~~~----------------------------------------------------lS~G~~~rv~laral~~-------~ 88 (144)
T cd03221 68 FEQ----------------------------------------------------LSGGEKMRLALAKLLLE-------N 88 (144)
T ss_pred Ecc----------------------------------------------------CCHHHHHHHHHHHHHhc-------C
Confidence 999 99999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+++||||||++||+.++..+.+.|+++ + .|+|++||+++++..+||++++|++||
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~---~----------~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY---P----------GTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc---C----------CEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999886 2 389999999999999999999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=305.14 Aligned_cols=157 Identities=29% Similarity=0.412 Sum_probs=140.0
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEec
Q 018638 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 174 (352)
Q Consensus 95 ~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q 174 (352)
.||+|+|+++.+++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ .++|++|
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--------------~i~~~~q 68 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI--------------TPVYKPQ 68 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE--------------EEEEEcc
Confidence 5899999999999985 999999999999999999999999999999999999999985 2789998
Q ss_pred CCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcE
Q 018638 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254 (352)
Q Consensus 175 ~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~l 254 (352)
++. ||||||||++|||||+. +|++
T Consensus 69 ~~~-------------------------------------------------LSgGq~qrv~laral~~-------~p~l 92 (177)
T cd03222 69 YID-------------------------------------------------LSGGELQRVAIAAALLR-------NATF 92 (177)
T ss_pred cCC-------------------------------------------------CCHHHHHHHHHHHHHhc-------CCCE
Confidence 643 99999999999999997 6999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe--ecccccc
Q 018638 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ--GMTHEFT 331 (352)
Q Consensus 255 lLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~--g~~~~~~ 331 (352)
+||||||++||+.++..+.+.|++++++++ .|||++||+++++..+||++++|+++-.+.+ |.|....
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~~~~---------~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGK---------KTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCC---------CEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999999999999999999999976631 4999999999999999999999998865543 5454333
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=383.79 Aligned_cols=234 Identities=29% Similarity=0.445 Sum_probs=187.1
Q ss_pred hhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeE
Q 018638 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSF 112 (352)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~y~~---~~~L~~vsl 112 (352)
.....+..+.+|+......+......+. +.......|+++|++++|+. +++|+|+||
T Consensus 579 ~~~~~a~~s~~RI~~~L~~~e~~~~~~~--------------------~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl 638 (1622)
T PLN03130 579 TQAVNANVSLKRLEELLLAEERVLLPNP--------------------PLEPGLPAISIKNGYFSWDSKAERPTLSNINL 638 (1622)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccccCC--------------------cccCCCCceEEEeeEEEccCCCCCceeeceeE
Confidence 4556677888888888776543211100 00001124999999999964 569999999
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc-eEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhh
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL 191 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~-G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~ 191 (352)
+|++|+.++|+||+|||||||+++|+|+++|++ |+|.+.| +|+||+|+|.+|+ .||+|||.|+
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~---------------~Iayv~Q~p~Lfn-gTIreNI~fg 702 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG---------------TVAYVPQVSWIFN-ATVRDNILFG 702 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC---------------eEEEEcCccccCC-CCHHHHHhCC
Confidence 999999999999999999999999999999999 8998532 5999999999997 5999999996
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC
Q 018638 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (352)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP 260 (352)
.. .+ ++++.++++.++|.+..+..| ..|||||||||+||||+++ +|+|+|||||
T Consensus 703 ~~----~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~-------~~~IlLLDEp 767 (1622)
T PLN03130 703 SP----FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS-------NSDVYIFDDP 767 (1622)
T ss_pred Cc----cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC-------CCCEEEECCC
Confidence 31 22 345677788888866554443 5799999999999999997 5999999999
Q ss_pred CCCCCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 261 TAGLDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 261 tsgLD~~~~~~l~-~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
||+||+...+.+. +.++.+. ++ +|+|+|||+++.+.. ||+|++|++|+|++.|+.+++..
T Consensus 768 tSALD~~~~~~I~~~~l~~~l-~~----------kTvIlVTH~l~~l~~-aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 768 LSALDAHVGRQVFDKCIKDEL-RG----------KTRVLVTNQLHFLSQ-VDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred ccccCHHHHHHHHHHHhhHHh-cC----------CEEEEEECCHhHHHh-CCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999988775 5566553 33 599999999998765 79999999999999998777653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=377.65 Aligned_cols=216 Identities=26% Similarity=0.425 Sum_probs=186.8
Q ss_pred eEEEEeEEEEeC-------------CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CceEEEECCEeC
Q 018638 91 LIDCRNVYKSFG-------------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKR 155 (352)
Q Consensus 91 ~l~~~nls~~y~-------------~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p--~~G~I~i~G~~~ 155 (352)
.+.++||++..+ .+.+|+|||++|++|++++|+|||||||||||++|+|+.++ .+|+|.++|++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 599999999873 24699999999999999999999999999999999999874 789999999874
Q ss_pred CCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHcCCCcccccCC-----CCCC
Q 018638 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLP-----SELS 228 (352)
Q Consensus 156 ~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LS 228 (352)
. .... ++.+|||+|++.+++.+||+||+.|..... ...+.++..+.++++++.+||.+..++.+ ..||
T Consensus 947 ~----~~~~-~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 947 K----QETF-ARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred C----hHHh-hhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 2 1112 235999999999999999999999875332 12344455667899999999998888886 5899
Q ss_pred hHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHH
Q 018638 229 GGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIR 307 (352)
Q Consensus 229 GGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~ 307 (352)
|||||||+||++|+. +|+||+|||||+|||+.++..+++.|++++++| .|||+++|+++ .+.
T Consensus 1022 gGerkRvsIa~aL~~-------~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g----------~tVI~t~Hq~~~~i~ 1084 (1470)
T PLN03140 1022 TEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG----------RTVVCTIHQPSIDIF 1084 (1470)
T ss_pred HHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCCCHHHH
Confidence 999999999999997 699999999999999999999999999998876 59999999998 577
Q ss_pred hhcCEEEEEeC-CeEEEeeccc
Q 018638 308 RAVDRLIFLYE-GKIVWQGMTH 328 (352)
Q Consensus 308 ~~aDrv~vL~~-G~iv~~g~~~ 328 (352)
+.+|++++|++ |+++..|++.
T Consensus 1085 ~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1085 EAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HhCCEEEEEcCCCEEEEECCcc
Confidence 89999999996 8999999764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=381.86 Aligned_cols=248 Identities=27% Similarity=0.387 Sum_probs=191.0
Q ss_pred HhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeE
Q 018638 18 SVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNV 97 (352)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl 97 (352)
.+..|+..+.... .....+..+.+|+......|+...... . ........|+++|+
T Consensus 566 ~l~~pl~~l~~~~-----~~~~~a~~s~~Ri~~~L~~~~~~~~~~--------~------------~~~~~~~~I~~~~v 620 (1495)
T PLN03232 566 VLRSPLNMLPNLL-----SQVVNANVSLQRIEELLLSEERILAQN--------P------------PLQPGAPAISIKNG 620 (1495)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCcccccccc--------C------------CcCCCCCcEEEEee
Confidence 3344554444433 456677888899988887764211000 0 00011124999999
Q ss_pred EEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEec
Q 018638 98 YKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 174 (352)
Q Consensus 98 s~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q 174 (352)
+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|.+.. + +.+|+||+|
T Consensus 621 sF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~----~----------~~~Iayv~Q 686 (1495)
T PLN03232 621 YFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV----I----------RGSVAYVPQ 686 (1495)
T ss_pred EEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE----e----------cCcEEEEcC
Confidence 999964 56999999999999999999999999999999999999999987631 1 225999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHhc
Q 018638 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIF 243 (352)
Q Consensus 175 ~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~~ 243 (352)
+|.+|+ .||+|||.|+.. .++ +++.++++.++|.+..+..| ..|||||||||+||||+++
T Consensus 687 ~p~Lf~-gTIreNI~fg~~----~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 757 (1495)
T PLN03232 687 VSWIFN-ATVRENILFGSD----FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1495)
T ss_pred cccccc-ccHHHHhhcCCc----cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc
Confidence 999997 599999998631 232 34666777778765544443 4799999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVED-LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~-ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|+|+|||||||+||+.+.+.+++ ++..+. ++ +|+|+|||+++.+. .||+|++|++|+|+
T Consensus 758 -------~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~----------kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 758 -------NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KG----------KTRVLVTNQLHFLP-LMDRIILVSEGMIK 818 (1495)
T ss_pred -------CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cC----------CEEEEEECChhhHH-hCCEEEEEeCCEEE
Confidence 599999999999999999988865 455443 33 59999999999876 58999999999999
Q ss_pred Eeeccccccc
Q 018638 323 WQGMTHEFTS 332 (352)
Q Consensus 323 ~~g~~~~~~~ 332 (352)
+.|+.+++..
T Consensus 819 ~~Gt~~eL~~ 828 (1495)
T PLN03232 819 EEGTFAELSK 828 (1495)
T ss_pred EecCHHHHHh
Confidence 9998777653
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=304.86 Aligned_cols=222 Identities=27% Similarity=0.455 Sum_probs=195.2
Q ss_pred ceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCceEEEECCEeCCCCCChhhhcc
Q 018638 90 VLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 90 ~~l~~~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+|+++||+.+-+++ .+|++|||+|++||+++|+||||||||||.++|+|.- ++++|+|.|+|+++..+. ..++++
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~-~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS-PDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC-HhHHHh
Confidence 479999999999985 9999999999999999999999999999999999986 679999999999998864 455566
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCC--HHHHHHHHHHHHHHcCCCc-ccccCCC-CCChHHHHHHHHHHHHh
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMR--DEQISELVKENLAAVGLKG-VEDRLPS-ELSGGMKKRVALARSII 242 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~--~~~~~~~v~~~l~~~gL~~-~~~~~~~-~LSGGqrQRvaIArAL~ 242 (352)
..|.+.||.|.=+|..|+.+.+........+.. ..+..+++++.++.+++++ +++|.+. .+|||||+|..|+.+++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 789999999999999999999987664322211 2355677899999999976 8888885 69999999999999998
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc-CEEEEEeCCeE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV-DRLIFLYEGKI 321 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a-Drv~vL~~G~i 321 (352)
. +|++.|||||-||||..+-+.+-+.+.+++.+| .++++|||....+..+- |+|.||-+|+|
T Consensus 161 l-------ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~----------~~~liITHy~rll~~i~pD~vhvl~~GrI 223 (251)
T COG0396 161 L-------EPKLAILDEPDSGLDIDALKIVAEGINALREEG----------RGVLIITHYQRLLDYIKPDKVHVLYDGRI 223 (251)
T ss_pred c-------CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCC----------CeEEEEecHHHHHhhcCCCEEEEEECCEE
Confidence 5 799999999999999999999999999999887 58999999988776553 99999999999
Q ss_pred EEeeccccc
Q 018638 322 VWQGMTHEF 330 (352)
Q Consensus 322 v~~g~~~~~ 330 (352)
+.+|.+ ++
T Consensus 224 v~sG~~-el 231 (251)
T COG0396 224 VKSGDP-EL 231 (251)
T ss_pred EecCCH-HH
Confidence 999988 54
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=319.18 Aligned_cols=206 Identities=30% Similarity=0.513 Sum_probs=175.7
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe-cCCCCCCCCC
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF-QSAALFDSLT 183 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~-Q~~~l~~~lT 183 (352)
.+++||||+|++|++++++|||||||||+||+|+|++.|++|.|.++|.+.... .+.. -+++++|+ |-..++-.+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~--~~~~-~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR--REEY-LRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh--HHHH-HHHHHHHhhhhheeeeech
Confidence 488999999999999999999999999999999999999999999999876431 1111 12588876 4445554566
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
+.+-+......+ ..+.++..++...+.+.++|+++++.+++.||-|||.|+.||.||++ +|+||+|||||-|
T Consensus 115 ~~ds~~v~~~Iy-~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh-------~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY-EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLH-------PPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH-hCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcC-------CCcEEEecCCccC
Confidence 666654432222 35677888899999999999999999999999999999999999998 5999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 264 LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
||..++..+.+.+++..++.. +||+++||+++.+..+||||++|+.|+++.+|+..++
T Consensus 187 LDV~aq~~ir~Flke~n~~~~---------aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l 244 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQ---------ATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhC---------ceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHH
Confidence 999999999999999976532 7999999999999999999999999999999877665
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=376.83 Aligned_cols=238 Identities=24% Similarity=0.330 Sum_probs=186.6
Q ss_pred hhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEEeCC--eeeeEeeeEE
Q 018638 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE--KHILRGVSFK 113 (352)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~y~~--~~~L~~vsl~ 113 (352)
........+.+|+......+..+...... .. ........|+++|++++|++ +++|+|+||+
T Consensus 598 ~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~--------------~~---~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~ 660 (1522)
T TIGR00957 598 SSIVQASVSLKRLRIFLSHEELEPDSIER--------------RT---IKPGEGNSITVHNATFTWARDLPPTLNGITFS 660 (1522)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccccccc--------------cc---cCCCCCCcEEEEEeEEEcCCCCCceeeeeEEE
Confidence 45566778888998888766432110000 00 00011125999999999974 5799999999
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~ 193 (352)
|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||+|++.+|+ .||+|||.|+..
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~i~yv~Q~~~l~~-~Ti~eNI~~g~~ 724 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------------SVAYVPQQAWIQN-DSLRENILFGKA 724 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---------------EEEEEcCCccccC-CcHHHHhhcCCc
Confidence 999999999999999999999999999999999999986 3899999999886 699999998642
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCC-----------CcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 194 ENSKMRDEQISELVKENLAAVGL-----------KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 194 ~~~~~~~~~~~~~v~~~l~~~gL-----------~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
.+.+.. +++++.+++ +....+.+.+|||||||||+||||++. +|+++||||||+
T Consensus 725 ----~~~~~~----~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~-------~~~illLDEp~s 789 (1522)
T TIGR00957 725 ----LNEKYY----QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS-------NADIYLFDDPLS 789 (1522)
T ss_pred ----cCHHHH----HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEcCCcc
Confidence 222222 222333222 223456788999999999999999997 599999999999
Q ss_pred CCCHHHHHHHHHHHHHHH--HcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 263 GLDPIASTVVEDLIRSVH--KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 263 gLD~~~~~~l~~ll~~l~--~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
+||+.+++.+++.+.+.. .++ +|+|+|||+++.+.. ||+|++|++|+|++.|+.+++..
T Consensus 790 aLD~~~~~~i~~~l~~~~~~~~~----------~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIGPEGVLKN----------KTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred ccCHHHHHHHHHHHhhhhhhhcC----------CEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHh
Confidence 999999999999887532 233 599999999999876 89999999999999998877653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=307.10 Aligned_cols=196 Identities=33% Similarity=0.463 Sum_probs=175.6
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
..+|+||||++++||.+||||+||||||||+|+|+|.++||+|+|.++|+-.. .. .+| ..+-|.+|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~-------li--~lg-----~Gf~pelT 105 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP-------LI--ELG-----AGFDPELT 105 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEeh-------hh--hcc-----cCCCcccc
Confidence 46999999999999999999999999999999999999999999999996311 01 112 23457799
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
.+|||.+.... .++..+++++++++..+..+|.++.++++.++|-||+-|+++|.|... +|+|||+||-.+.
T Consensus 106 GreNi~l~~~~-~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~-------~pdILllDEvlav 177 (249)
T COG1134 106 GRENIYLRGLI-LGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHV-------EPDILLLDEVLAV 177 (249)
T ss_pred hHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhc-------CCCEEEEehhhhc
Confidence 99999886543 357789999999999999999999999999999999999999999975 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 264 LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
.|+.-++.-.+.+.++.+++ .|+|+||||++.+.++|||+++|++|+|...|+++++.
T Consensus 178 GD~~F~~K~~~rl~e~~~~~----------~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKN----------KTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcC----------CEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 99999999999999997775 49999999999999999999999999999999998864
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=351.01 Aligned_cols=195 Identities=29% Similarity=0.434 Sum_probs=163.4
Q ss_pred EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE-----------ECCEeCCCCCChh
Q 018638 95 RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDE 162 (352)
Q Consensus 95 ~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~-----------i~G~~~~~~~~~~ 162 (352)
++++++||.. .+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|+++.......
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 3489999874 6999999 9999999999999999999999999999999999997 8998764211000
Q ss_pred hhccceEEEEecC----CCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHH
Q 018638 163 EISGLRIGLVFQS----AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 163 ~~~~~~ig~v~Q~----~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIA 238 (352)
.....++++.+|. +.+|. .||.||+.+. +..+++.++++.++|....++.+.+|||||||||+||
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia 224 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV----------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIA 224 (590)
T ss_pred hccCcceeecccchhhhhhhhc-chHHHHHHhh----------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 0111235665654 44443 3999998641 1234578899999999899999999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
+||+. +|++|||||||++||+..+..+.++|+++++ | .|||+||||++++..+||+|++|++
T Consensus 225 ~al~~-------~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g----------~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 225 AALLR-------DADFYFFDEPTSYLDIRQRLNVARLIRELAE-G----------KYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred HHHhc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-C----------CEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99997 6999999999999999999999999999977 6 5999999999999999999999987
Q ss_pred C
Q 018638 319 G 319 (352)
Q Consensus 319 G 319 (352)
+
T Consensus 287 ~ 287 (590)
T PRK13409 287 E 287 (590)
T ss_pred C
Confidence 3
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=286.24 Aligned_cols=156 Identities=44% Similarity=0.746 Sum_probs=141.7
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|.++.... ... ...+++|+|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~-~~~-~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-LEE-LRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC-HHH-HHhceEEEe
Confidence 689999998888999999999999999999999999999999999999999999999998765321 111 123699999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
| |||||+||++||||++. +|+
T Consensus 80 q----------------------------------------------------lS~G~~~r~~l~~~l~~-------~~~ 100 (157)
T cd00267 80 Q----------------------------------------------------LSGGQRQRVALARALLL-------NPD 100 (157)
T ss_pred e----------------------------------------------------CCHHHHHHHHHHHHHhc-------CCC
Confidence 9 99999999999999996 599
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
++||||||++||+.++..+.+.|.++.+++ .|+|++||+++++..+||++++|++|+
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEG----------RTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999987764 599999999999999999999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=327.53 Aligned_cols=214 Identities=32% Similarity=0.506 Sum_probs=182.7
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+.++||+|.|+ .+++|+++||++++|+.++|+||+|+||||++++|.+++++++|.|.+||+++....... .++-|
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~s--lR~aI 339 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQS--LRRAI 339 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHH--HHHHh
Confidence 388999999995 578999999999999999999999999999999999999999999999999986542222 23359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIA 238 (352)
|.|||+..||.+ |++.|+.++.. ... .+.+..+++.+.+.++....| -.|||||||||+||
T Consensus 340 g~VPQDtvLFND-ti~yni~ygr~---~at----~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaia 411 (497)
T COG5265 340 GIVPQDTVLFND-TIAYNIKYGRP---DAT----AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA 411 (497)
T ss_pred CcCcccceehhh-hHHHHHhccCc---ccc----HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHH
Confidence 999999999975 99999998531 122 334566677777766666655 47999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|++++ +|+||+|||.||+||..++++++..|+++.+. .|-++|.|+++++.. ||.|+||++
T Consensus 412 r~ilk-------~p~il~~deatsaldt~te~~iq~~l~~~~~~-----------rttlviahrlsti~~-adeiivl~~ 472 (497)
T COG5265 412 RTILK-------NPPILILDEATSALDTHTEQAIQAALREVSAG-----------RTTLVIAHRLSTIID-ADEIIVLDN 472 (497)
T ss_pred HHHhc-------CCCEEEEehhhhHhhhhHHHHHHHHHHHHhCC-----------CeEEEEeehhhhccC-CceEEEeeC
Confidence 99998 59999999999999999999999999998743 489999999999998 599999999
Q ss_pred CeEEEeecccccccC
Q 018638 319 GKIVWQGMTHEFTSS 333 (352)
Q Consensus 319 G~iv~~g~~~~~~~~ 333 (352)
|+|++.|+-++++..
T Consensus 473 g~i~erg~h~~ll~~ 487 (497)
T COG5265 473 GRIVERGTHEELLAA 487 (497)
T ss_pred CEEEecCcHHHHHHc
Confidence 999999966666544
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=370.02 Aligned_cols=208 Identities=23% Similarity=0.294 Sum_probs=176.5
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC----CCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL----APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~----~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
.+.+|+|||+++++||+++|+||||||||||||+|+|+. +|++|+|.++|+++... . ...+..++||+|+..+
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~--~-~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI--K-KHYRGDVVYNAETDVH 149 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHH--H-hhcCceeEEecccccc
Confidence 467999999999999999999999999999999999996 57999999999976321 1 1123359999999999
Q ss_pred CCCCCHHHHHHhhhhhcC------CCCHHHHHHH-HHHHHHHcCCCcccccC-----CCCCChHHHHHHHHHHHHhccCC
Q 018638 179 FDSLTVRENVGFLLYENS------KMRDEQISEL-VKENLAAVGLKGVEDRL-----PSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~------~~~~~~~~~~-v~~~l~~~gL~~~~~~~-----~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
++.+||+||+.|+..... ...+++..++ ++++++.+||++..+++ +..|||||||||+||++|+.
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--- 226 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--- 226 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh---
Confidence 999999999999764321 1233333333 46689999998777654 57899999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCH-HHHHhhcCEEEEEeCCeEEEe
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH-STIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl-~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|+|++|||||+|||+.++..+.+.|++++++ | .|||+++|++ +.+.+++|+|++|++|+++..
T Consensus 227 ----~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g----------~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~ 292 (1394)
T TIGR00956 227 ----GAKIQCWDNATRGLDSATALEFIRALKTSANILD----------TTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF 292 (1394)
T ss_pred ----CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCCCHHHHHhhceEEEEeCCeEEEE
Confidence 69999999999999999999999999999875 5 5999999996 789999999999999999999
Q ss_pred eccccc
Q 018638 325 GMTHEF 330 (352)
Q Consensus 325 g~~~~~ 330 (352)
|+++++
T Consensus 293 G~~~~~ 298 (1394)
T TIGR00956 293 GPADKA 298 (1394)
T ss_pred CCHHHH
Confidence 988765
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=285.59 Aligned_cols=202 Identities=33% Similarity=0.507 Sum_probs=173.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCEeCCCCCChhhhccc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
++.++||+.+.++...|-+|||+|.+||++-|+||||||||||+.-+.|.+.++ +|+++++++++..+.. .++
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa----~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA----AQR 77 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch----hhh
Confidence 588999999999999999999999999999999999999999999999999986 8999999999865432 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
++|++||++.|||+++|.+|+.|.+-.. ..-++.+..+..+|++.||.+..++.|.+||||||-||++-|+|+.
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~--~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla---- 151 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPAT--LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA---- 151 (213)
T ss_pred heeeeecccccccccccccceEEecCcc--cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh----
Confidence 7999999999999999999999976321 2223445567889999999999999999999999999999999996
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV-HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l-~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
+|+.+|||||+|.||..-+.++.+.+-.- +..| ...|+||||+..+. ...||+-|
T Consensus 152 ---~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~ag----------iPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 152 ---QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAG----------IPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred ---CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcC----------CCeEEEecccccCC-CCCeeeee
Confidence 69999999999999999999999887654 4445 57899999999876 44455433
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=364.90 Aligned_cols=197 Identities=25% Similarity=0.433 Sum_probs=162.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
++++|+++. .+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| +|+|
T Consensus 429 ~~~~~~s~~--~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---------------~iay 491 (1490)
T TIGR01271 429 LFFSNFSLY--VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------------RISF 491 (1490)
T ss_pred ccccccccc--cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------------EEEE
Confidence 556666553 35689999999999999999999999999999999999999999999987 3899
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-----------ccccCCCCCChHHHHHHHHHHH
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-----------VEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~~~~~~LSGGqrQRvaIArA 240 (352)
++|++.+|+ .||+|||.|+.. .+.+. ..++++.++|.+ .....+.+|||||||||+||||
T Consensus 492 v~Q~~~l~~-~Ti~eNI~~g~~----~~~~~----~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARA 562 (1490)
T TIGR01271 492 SPQTSWIMP-GTIKDNIIFGLS----YDEYR----YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARA 562 (1490)
T ss_pred EeCCCccCC-ccHHHHHHhccc----cchHH----HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHH
Confidence 999999998 499999998742 12111 122222223221 2345678999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL-IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~l-l~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
++. +|+++||||||++||+..+..+++. +.++.+ + +|+|+|||+++.+.. ||+|++|++|
T Consensus 563 l~~-------~~~illLDep~saLD~~~~~~i~~~~l~~~~~-~----------~tvilvtH~~~~~~~-ad~ii~l~~g 623 (1490)
T TIGR01271 563 VYK-------DADLYLLDSPFTHLDVVTEKEIFESCLCKLMS-N----------KTRILVTSKLEHLKK-ADKILLLHEG 623 (1490)
T ss_pred HHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-C----------CeEEEEeCChHHHHh-CCEEEEEECC
Confidence 997 5999999999999999999999974 666643 4 599999999999875 8999999999
Q ss_pred eEEEeecccccccC
Q 018638 320 KIVWQGMTHEFTSS 333 (352)
Q Consensus 320 ~iv~~g~~~~~~~~ 333 (352)
++++.|+.+++...
T Consensus 624 ~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 624 VCYFYGTFSELQAK 637 (1490)
T ss_pred EEEEEcCHHHHHhc
Confidence 99999988887643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=334.00 Aligned_cols=207 Identities=34% Similarity=0.522 Sum_probs=176.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|+++||+++||++.+|+++||+|.+|+.+||||+||||||||||+|+|.+.|++|+|.+.+. .+|
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-------------~~v 68 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-------------LRV 68 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-------------ceE
Confidence 4699999999999999999999999999999999999999999999999999999999987642 169
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCC-----------------------------CHHHHHHHHHHHHHHcCCCccc
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKM-----------------------------RDEQISELVKENLAAVGLKGVE 220 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~-----------------------------~~~~~~~~v~~~l~~~gL~~~~ 220 (352)
+|++|++.+.+..||.+.+..+....... ..-+.+.++..+|..+|+...
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999998889999887654211000 001123456778888888877
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 018638 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (352)
Q Consensus 221 ~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivT 300 (352)
++++++||||||.||+||+||+. +|++|||||||++||..+...+.+.|.+. +| |+|+||
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~-------~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-----------tviiVS 207 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLE-------EPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-----------TVIVVS 207 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-----------cEEEEe
Confidence 99999999999999999999997 69999999999999999999999998753 33 899999
Q ss_pred CCHHHHHhhcCEEEEEeCCeEEE-eeccccc
Q 018638 301 HQHSTIRRAVDRLIFLYEGKIVW-QGMTHEF 330 (352)
Q Consensus 301 Hdl~~i~~~aDrv~vL~~G~iv~-~g~~~~~ 330 (352)
||-+++.++|++|+.++.|++.. .|.-+.+
T Consensus 208 HDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 208 HDRYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred CCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 99999999999999999998754 4544443
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=289.69 Aligned_cols=156 Identities=25% Similarity=0.297 Sum_probs=134.8
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
+++|+|+||+|++|++++|+||||||||||||++. +++|+|.++|... . . .+.+++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~-~---~---~~~~~~~~~q--------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP-K---F---SRNKLIFIDQ--------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc-c---c---ccccEEEEhH---------
Confidence 57999999999999999999999999999999985 3799999987631 1 1 1224788877
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCCCC--CcEEEEeCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVE--PEVLLYDEP 260 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~--p~llLLDEP 260 (352)
.++++.++|.. ..++++.+||||||||++|||||+. + |+++|||||
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~-------~~~p~llLlDEP 116 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFS-------EPPGTLFILDEP 116 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhh-------CCCCCEEEEeCC
Confidence 24678889876 4789999999999999999999996 7 999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 261 tsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
|++||+.++..+.+.|++++++| .|||+|||+++++ ..||++++|++|+.
T Consensus 117 t~~LD~~~~~~l~~~l~~~~~~g----------~tvIivSH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 117 STGLHQQDINQLLEVIKGLIDLG----------NTVILIEHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence 99999999999999999997665 5999999999987 57999999977654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=364.98 Aligned_cols=206 Identities=25% Similarity=0.370 Sum_probs=174.9
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCEeCCCCCChhhhccceEEEEecCCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~ 179 (352)
.+.+|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .++.++||+|+..++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~-----~~~~i~yv~Q~d~~~ 251 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV-----PRKTSAYISQNDVHV 251 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc-----ccceeEEecccccCC
Confidence 356999999999999999999999999999999999999998 999999999864321 133699999999999
Q ss_pred CCCCHHHHHHhhhhhcCC---------CCHHHH------------------------HHHHHHHHHHcCCCccc-----c
Q 018638 180 DSLTVRENVGFLLYENSK---------MRDEQI------------------------SELVKENLAAVGLKGVE-----D 221 (352)
Q Consensus 180 ~~lTV~eni~~~~~~~~~---------~~~~~~------------------------~~~v~~~l~~~gL~~~~-----~ 221 (352)
+.+||+||+.|+...... ...++. ...++++++.+||++.. +
T Consensus 252 ~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~ 331 (1470)
T PLN03140 252 GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD 331 (1470)
T ss_pred CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC
Confidence 999999999997642210 011110 11356789999997654 5
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEc
Q 018638 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVT 300 (352)
Q Consensus 222 ~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivT 300 (352)
+.++.|||||||||+||++|+. +|++++|||||+|||+.+..++.+.|++++++ | .|+|+++
T Consensus 332 ~~~rglSGGerkRVsia~aL~~-------~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g----------~Tviis~ 394 (1470)
T PLN03140 332 EMIRGISGGQKKRVTTGEMIVG-------PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTE----------ATVLMSL 394 (1470)
T ss_pred ccccCCCcccceeeeehhhhcC-------CCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcC----------CEEEEEe
Confidence 6778999999999999999997 69999999999999999999999999999764 4 5999999
Q ss_pred CCH-HHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 301 HQH-STIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 301 Hdl-~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+. +++.+++|+|++|++|+++..|+++++
T Consensus 395 Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~ 425 (1470)
T PLN03140 395 LQPAPETFDLFDDIILLSEGQIVYQGPRDHI 425 (1470)
T ss_pred cCCCHHHHHHhheEEEeeCceEEEeCCHHHH
Confidence 996 688899999999999999999987765
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=351.65 Aligned_cols=223 Identities=29% Similarity=0.475 Sum_probs=203.0
Q ss_pred ceEEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~-~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
..+.++|++|.|+.+. +++++||.|++||+.|+.|+|||||||++|+|.|..+|++|+++++|.++..... ....++.
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~-~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD-FQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc-hhhhhhh
Confidence 4689999999999877 9999999999999999999999999999999999999999999999998754322 2223446
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
+||+||...+++.+|.+|++.+... .++.+..++.+.++.+++.++|.+..+++.+.+|||+|+|+++|.|++.
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~ar-lrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig----- 715 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYAR-LRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG----- 715 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHH-HcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc-----
Confidence 9999999999999999999998764 4456777888889999999999999999999999999999999999996
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++++|||||+|+||.+++.+++++.+++++| ..||++||.+++++.+|||+.+|.+|++...|++.
T Consensus 716 --~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g----------~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 716 --DPSVILLDEPSTGLDPKARRHLWDIIARLRKNG----------KAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQ 783 (885)
T ss_pred --CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHHhhhhheeecCeeEEecChH
Confidence 599999999999999999999999999999876 38999999999999999999999999999999887
Q ss_pred ccc
Q 018638 329 EFT 331 (352)
Q Consensus 329 ~~~ 331 (352)
++.
T Consensus 784 ~LK 786 (885)
T KOG0059|consen 784 ELK 786 (885)
T ss_pred HHH
Confidence 763
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=342.80 Aligned_cols=221 Identities=24% Similarity=0.315 Sum_probs=168.1
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC---CCCceEEEECCEeCCCCC-Ch---
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL---APDKGEVYIRGRKRAGLI-SD--- 161 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~---~p~~G~I~i~G~~~~~~~-~~--- 161 (352)
..+|+++|++++|+++.+|+|+||+|.+|+++|||||||||||||||+|+|.. .|++|+|.+.++.+.... ..
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 35799999999999888999999999999999999999999999999999964 588999987655432110 00
Q ss_pred -----hh---hccceEEEEecCCCCCCCCCHHHHHHhh-----------------hhhcCCCCHHHHHHHHHHHHHHcCC
Q 018638 162 -----EE---ISGLRIGLVFQSAALFDSLTVRENVGFL-----------------LYENSKMRDEQISELVKENLAAVGL 216 (352)
Q Consensus 162 -----~~---~~~~~ig~v~Q~~~l~~~lTV~eni~~~-----------------~~~~~~~~~~~~~~~v~~~l~~~gL 216 (352)
.+ ..+..++|++|++.+... ++.+|.... +...........++++.++|..+|+
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 00 011236788887644221 222222110 0000001111334567788888999
Q ss_pred C-cccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE
Q 018638 217 K-GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295 (352)
Q Consensus 217 ~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~t 295 (352)
. +..++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.+.|+++ + .|
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~-------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~----------~t 393 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFI-------EPDLLLLDEPTNHLDLHAVLWLETYLLKW---P----------KT 393 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHc---C----------CE
Confidence 5 56788999999999999999999996 69999999999999999999999999886 3 49
Q ss_pred EEEEcCCHHHHHhhcCEEEEEeCCeEE-Eeeccccc
Q 018638 296 YVVVTHQHSTIRRAVDRLIFLYEGKIV-WQGMTHEF 330 (352)
Q Consensus 296 vIivTHdl~~i~~~aDrv~vL~~G~iv-~~g~~~~~ 330 (352)
||+||||++++..+||+|++|++|+++ ..|+..++
T Consensus 394 viivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 394 FIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999996 56655443
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=285.55 Aligned_cols=193 Identities=32% Similarity=0.488 Sum_probs=167.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+++.+|++...+++.++.++||++.+||++-|.||||||||||||+|+||++|++|+|+|+|..+..... .. ...+-
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~--~~-~~~l~ 78 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE--SY-HQALL 78 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh--hH-HHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999987654211 11 22477
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+-.++.+=+.+||+||+.|....+...+ ...+.++++.+||.++.|.++.+||-|||+||||||-++.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~----~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls------- 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGN----AATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLS------- 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCc----hhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcC-------
Confidence 88888888889999999999765444322 2347889999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
.++++||||||++||+..+..+..++..-..+|+ .||.+||+.--+.
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GG----------iVllttHq~l~~~ 194 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGG----------IVLLTTHQPLPIA 194 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCC----------EEEEecCCccCCC
Confidence 6999999999999999999999999998777762 7999999976654
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=330.51 Aligned_cols=219 Identities=36% Similarity=0.572 Sum_probs=192.5
Q ss_pred ceEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC---CceEEEECCEeCCCCCCh
Q 018638 90 VLIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP---DKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 90 ~~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p---~~G~I~i~G~~~~~~~~~ 161 (352)
..+.++|++....+ +++|+|||.++++||++||+|||||||||||++|+|.... .+|+|++||+....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~---- 99 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS---- 99 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch----
Confidence 34788888887743 6799999999999999999999999999999999999975 68999999965321
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC--CCCHHHHHHHHHHHHHHcCCCcccccCCC-----CCChHHHHH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGVEDRLPS-----ELSGGMKKR 234 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSGGqrQR 234 (352)
+ ..++..|||.|+..+++.+||+|++.|.....- ..+.++..++|+++++.+||....|..++ .+|||||+|
T Consensus 100 ~-~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkR 178 (613)
T KOG0061|consen 100 R-SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKR 178 (613)
T ss_pred h-hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhH
Confidence 1 123369999999999999999999999765432 23668888999999999999988888886 599999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHHhhcCEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRL 313 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~~~aDrv 313 (352)
|+||.-|++ +|.||+|||||+|||..+..++.+.|++++++| +|||++=|++. .+.++.|++
T Consensus 179 vsia~Ell~-------~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~g----------rtVi~tIHQPss~lf~lFD~l 241 (613)
T KOG0061|consen 179 VSIALELLT-------DPSILFLDEPTSGLDSFSALQVVQLLKRLARSG----------RTVICTIHQPSSELFELFDKL 241 (613)
T ss_pred HHHHHHHHc-------CCCEEEecCCCCCcchhhHHHHHHHHHHHHhCC----------CEEEEEEeCCcHHHHHHHhHh
Confidence 999999997 599999999999999999999999999999887 59999999995 778888999
Q ss_pred EEEeCCeEEEeeccccc
Q 018638 314 IFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~ 330 (352)
++|.+|+++..|++.+.
T Consensus 242 ~lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 242 LLLSEGEVVYSGSPREL 258 (613)
T ss_pred hhhcCCcEEEecCHHHH
Confidence 99999999999988653
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=350.61 Aligned_cols=221 Identities=28% Similarity=0.510 Sum_probs=189.5
Q ss_pred CCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 86 DDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
..+. |+++|++.+|.. ..||+||||+|++||.+||||..|||||||+.+|-++..|.+|+|.|||.|+.... -.+
T Consensus 1135 ~~G~--I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ig-L~d 1211 (1381)
T KOG0054|consen 1135 SKGE--IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIG-LHD 1211 (1381)
T ss_pred CCCe--EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccccc-HHH
Confidence 3444 999999999964 47999999999999999999999999999999999999999999999999988753 333
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMK 232 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqr 232 (352)
+ |.+++.+||+|.||.+ |||.|+.= . ...+ ++.+.++|++++|.+...+.| .++|-|||
T Consensus 1212 L-RsrlsIIPQdPvLFsG-TvR~NLDP-f---~e~s----D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1212 L-RSRLSIIPQDPVLFSG-TVRFNLDP-F---DEYS----DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred H-HhcCeeeCCCCceecC-ccccccCc-c---cccC----HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 3 3479999999999985 99999842 1 1122 344778889888876665554 58999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
|-++|||||++ +++||+|||+||++|+++-..+++.|++--++ +|||.|.|+++++.+. ||
T Consensus 1282 QLlCLARALLr-------~skILvLDEATAsVD~~TD~lIQ~tIR~~F~d-----------cTVltIAHRl~TVmd~-Dr 1342 (1381)
T KOG0054|consen 1282 QLLCLARALLR-------KSKILVLDEATASVDPETDALIQKTIREEFKD-----------CTVLTIAHRLNTVMDS-DR 1342 (1381)
T ss_pred HHHHHHHHHhc-------cCCEEEEecccccCChHHHHHHHHHHHHHhcC-----------CeEEEEeeccchhhhc-Ce
Confidence 99999999997 69999999999999999999999999986554 6999999999999985 99
Q ss_pred EEEEeCCeEEEeecccccccCCcHHH
Q 018638 313 LIFLYEGKIVWQGMTHEFTSSSNPIV 338 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~~~~~~~ 338 (352)
|+||++|+|++.|+|++++++.+...
T Consensus 1343 VlVld~G~v~EfdsP~~Ll~~~~S~f 1368 (1381)
T KOG0054|consen 1343 VLVLDAGRVVEFDSPAELLSDKDSLF 1368 (1381)
T ss_pred EEEeeCCeEeecCChHHHHhCCcchH
Confidence 99999999999999999886654433
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=287.30 Aligned_cols=199 Identities=28% Similarity=0.343 Sum_probs=141.7
Q ss_pred EeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHH-HHHHcCCCCCceEEEECC-------EeCCCCCCh--hhhccceE
Q 018638 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTIL-KIIAGLLAPDKGEVYIRG-------RKRAGLISD--EEISGLRI 169 (352)
Q Consensus 100 ~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLl-k~l~Gl~~p~~G~I~i~G-------~~~~~~~~~--~~~~~~~i 169 (352)
...+..+|++|||+|++||++||+||||||||||+ ..|. .+|++.+.. ......... ........
T Consensus 4 ~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 4 RGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred ccchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 33456799999999999999999999999999995 4443 134432210 000000000 01111234
Q ss_pred EEEecCCC--CCCCCCHHH---HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhc
Q 018638 170 GLVFQSAA--LFDSLTVRE---NVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 170 g~v~Q~~~--l~~~lTV~e---ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
++.+|++. +.+..+|.. ...+.... .......++ .++++.+++.+ ..++++.+|||||||||+|||||+.
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLL---FARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHH---hhhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 55555542 344445543 22221111 112222333 56899999986 5899999999999999999999997
Q ss_pred cCCCCCCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE-----
Q 018638 244 DNTKESVEP--EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL----- 316 (352)
Q Consensus 244 ~~~~~a~~p--~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL----- 316 (352)
+| ++|||||||++||+..+..+.++|++++++| .|+|+||||++++ .+|||+++|
T Consensus 155 -------~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g----------~tii~itH~~~~~-~~~d~i~~l~~~~~ 216 (226)
T cd03270 155 -------GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLG----------NTVLVVEHDEDTI-RAADHVIDIGPGAG 216 (226)
T ss_pred -------CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEEeCHHHH-HhCCEEEEeCCCcc
Confidence 46 6999999999999999999999999997766 5999999999987 589999999
Q ss_pred -eCCeEEEee
Q 018638 317 -YEGKIVWQG 325 (352)
Q Consensus 317 -~~G~iv~~g 325 (352)
++|+|+++|
T Consensus 217 ~~~G~iv~~g 226 (226)
T cd03270 217 VHGGEIVAQG 226 (226)
T ss_pred ccCCEEEecC
Confidence 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=353.02 Aligned_cols=194 Identities=28% Similarity=0.442 Sum_probs=158.8
Q ss_pred EeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCC
Q 018638 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179 (352)
Q Consensus 100 ~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~ 179 (352)
.++++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+. .+|+|++|++.+|
T Consensus 669 ~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~---------------~~i~yv~Q~~~l~ 733 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---------------RSIAYVPQQAWIM 733 (1560)
T ss_pred ccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC---------------CeEEEEeCCCccC
Confidence 3456679999999999999999999999999999999999999999999863 1599999999988
Q ss_pred CCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 180 DSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
+ .||+|||.|+.. .+.+...+ .+.+.++.+ |+....++++.+|||||||||+|||||+. +|
T Consensus 734 ~-~Tv~enI~~~~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~-------~p 801 (1560)
T PTZ00243 734 N-ATVRGNILFFDE----EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA-------NR 801 (1560)
T ss_pred C-CcHHHHHHcCCh----hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc-------CC
Confidence 6 699999998531 11111111 122334444 66666778899999999999999999997 59
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll-~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
+++||||||++||+.....+++.+ .... +| +|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 802 ~illLDEP~saLD~~~~~~i~~~~~~~~~-~~----------~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 802 DVYLLDDPLSALDAHVGERVVEECFLGAL-AG----------KTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHhh-CC----------CEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999988887643 3322 34 59999999999985 58999999999999999888765
Q ss_pred c
Q 018638 332 S 332 (352)
Q Consensus 332 ~ 332 (352)
.
T Consensus 870 ~ 870 (1560)
T PTZ00243 870 R 870 (1560)
T ss_pred h
Confidence 3
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=310.07 Aligned_cols=202 Identities=30% Similarity=0.485 Sum_probs=173.7
Q ss_pred CCcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 87 DGDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
.+..+++++|+++.|++ +.+++++||.|.+|+.+|||||||+|||||||+|+|...|.+|+|.+.-.
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~------------ 384 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET------------ 384 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc------------
Confidence 45678999999999966 68999999999999999999999999999999999999999999987531
Q ss_pred cceEEEEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhc
Q 018638 166 GLRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 166 ~~~ig~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
.+|||..|+. .+++..|+.|++.-.. .... +..+...|.++++. +...+++..||||||-|+.||+.++.
T Consensus 385 -v~igyf~Q~~~~l~~~~t~~d~l~~~~---~~~~----e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 385 -VKIGYFDQHRDELDPDKTVLEELSEGF---PDGD----EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred -eEEEEEEehhhhcCccCcHHHHHHhhC---cccc----HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc
Confidence 1699999987 4567789999986532 1111 45688899999996 46688999999999999999999996
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|.+|||||||++||..+...+.+.|.++ +| |||+||||..++.++|++++.+.+ ++.+
T Consensus 457 -------~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~G-----------tvl~VSHDr~Fl~~va~~i~~~~~-~~~~ 515 (530)
T COG0488 457 -------PPNLLLLDEPTNHLDIESLEALEEALLDF--EG-----------TVLLVSHDRYFLDRVATRIWLVED-KVEE 515 (530)
T ss_pred -------CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CC-----------eEEEEeCCHHHHHhhcceEEEEcC-ceeE
Confidence 69999999999999999999999999876 34 899999999999999999999998 6655
Q ss_pred e-ecccc
Q 018638 324 Q-GMTHE 329 (352)
Q Consensus 324 ~-g~~~~ 329 (352)
. |...+
T Consensus 516 ~~g~y~~ 522 (530)
T COG0488 516 FEGGYED 522 (530)
T ss_pred cCCCHHH
Confidence 5 54333
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=325.62 Aligned_cols=237 Identities=28% Similarity=0.419 Sum_probs=193.8
Q ss_pred hhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeE
Q 018638 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSF 112 (352)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~y~~---~~~L~~vsl 112 (352)
+....+..+.+|+......+..+...... .+..+.+..++++|.+++.+. .+.|+||||
T Consensus 481 ~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~------------------~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~ 542 (1381)
T KOG0054|consen 481 SQLVQAKVSLKRLKEFLLSEELDPDSVER------------------SPDEAGENAIEIKNGSFSWDSESPEPTLKDINF 542 (1381)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcccccc------------------CCCCCCCceEEEeeeeEecCCCCCcccccceeE
Confidence 44556788899999999888654433311 122234456999999999864 348999999
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
+|++|+.+||+||-|||||+||.+|.|-++..+|+|.++|. ++||+|.|.+++ .||+|||.|+.
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs---------------iaYv~Q~pWI~n-gTvreNILFG~ 606 (1381)
T KOG0054|consen 543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS---------------VAYVPQQPWIQN-GTVRENILFGS 606 (1381)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe---------------EEEeccccHhhC-CcHHHhhhcCc
Confidence 99999999999999999999999999999999999999883 899999999997 59999999975
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 193 YENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
. .++ ++.++.++.+.|+..++-.| -+|||||||||+||||+.+ +++|+|||.|+
T Consensus 607 ~----~d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~-------~adIYLLDDpl 671 (1381)
T KOG0054|consen 607 P----YDE----ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ-------DADIYLLDDPL 671 (1381)
T ss_pred c----ccH----HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc-------cCCEEEEcCcc
Confidence 2 232 34667788888876655555 5999999999999999998 59999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 262 sgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
|++|....+.+++-.-...-++ +|+|+|||+++.+.. ||+|++|++|+|++.|+.+|+.+
T Consensus 672 SAVDahvg~~if~~ci~~~L~~----------KT~ILVTHql~~L~~-ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 672 SAVDAHVGKHIFEECIRGLLRG----------KTVILVTHQLQFLPH-ADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred hhhhHhhhHHHHHHHHHhhhcC----------CEEEEEeCchhhhhh-CCEEEEecCCeEecccCHHHHHh
Confidence 9999999888875443322223 599999999998776 69999999999999998888764
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=264.98 Aligned_cols=210 Identities=31% Similarity=0.450 Sum_probs=178.2
Q ss_pred ceEEEEeEEEEe-----CC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe----CCCC
Q 018638 90 VLIDCRNVYKSF-----GE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK----RAGL 158 (352)
Q Consensus 90 ~~l~~~nls~~y-----~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~----~~~~ 158 (352)
..|.++||+|+| ++ -++|++|||+++.||++++=||||||||||||+|.|-+.||+|+|++..+. +...
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 358999999999 33 369999999999999999999999999999999999999999999996542 1111
Q ss_pred CChh---hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHH
Q 018638 159 ISDE---EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKR 234 (352)
Q Consensus 159 ~~~~---~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQR 234 (352)
.+. ..++.-||||.|--...|..+..|.++.++.. .+.+.+....++.++|.++++.+. ..-.|.++|||||||
T Consensus 83 -~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~-~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQR 160 (235)
T COG4778 83 -EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQR 160 (235)
T ss_pred -ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhee
Confidence 111 22334599999988778888888988888754 346777788889999999999754 455689999999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
|.|||.++. +-+||||||||++||..++..+.++|.+-+..| +.+|=|-||-+.=..+|||++
T Consensus 161 VNIaRgfiv-------d~pILLLDEPTasLDa~Nr~vVveli~e~Ka~G----------aAlvGIFHDeevre~vadR~~ 223 (235)
T COG4778 161 VNIARGFIV-------DYPILLLDEPTASLDATNRAVVVELIREAKARG----------AALVGIFHDEEVREAVADRLL 223 (235)
T ss_pred hhhhhhhhc-------cCceEEecCCcccccccchHHHHHHHHHHHhcC----------ceEEEeeccHHHHHHHhhhee
Confidence 999999997 589999999999999999999999999988887 689999999999899999998
Q ss_pred EEeC
Q 018638 315 FLYE 318 (352)
Q Consensus 315 vL~~ 318 (352)
-|..
T Consensus 224 ~~~~ 227 (235)
T COG4778 224 DVSA 227 (235)
T ss_pred eccc
Confidence 7753
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=269.23 Aligned_cols=228 Identities=25% Similarity=0.379 Sum_probs=192.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+++++||..+- -|-.+|.++..||++-+|||||||||||+-.++|+. |-+|+|.++|.++..+. ..+..+ +-
T Consensus 2 ~l~qln~v~~~t----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~-~~eLAr-hR 74 (248)
T COG4138 2 ILMQLNDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWS-ATELAR-HR 74 (248)
T ss_pred ceeeeccccccc----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHh-HhHHHH-HH
Confidence 368889887642 377899999999999999999999999999999976 67899999999876542 333333 45
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+.|+......|.|+.++.+. .+.++....+.++...++|++.+.|..++|||||.|||-+|-..++-+++..
T Consensus 75 AYLsQqq~p~f~mpV~~YL~L~------qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~N 148 (248)
T COG4138 75 AYLSQQQTPPFAMPVWHYLTLH------QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDAN 148 (248)
T ss_pred HHHhhccCCcchhhhhhhhhhc------CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCC
Confidence 7998876544458999998763 2345556678889999999999999999999999999999999988777666
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
...++||+|||.++||...+..+..+|.++.++| .+|||++||++.-.+.||++++++.|++...|..+|
T Consensus 149 P~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G----------~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~e 218 (248)
T COG4138 149 PAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQG----------LAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREE 218 (248)
T ss_pred ccceeEEecCCCcchhHHHHHHHHHHHHHHHhCC----------cEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhh
Confidence 6678999999999999999999999999999998 699999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHh
Q 018638 330 FTSSSNPIVQQFA 342 (352)
Q Consensus 330 ~~~~~~~~~~~~~ 342 (352)
++++ +.+.+.+
T Consensus 219 Vlt~--~vL~q~f 229 (248)
T COG4138 219 VLTP--PVLAQAY 229 (248)
T ss_pred hcCh--HHHHHHh
Confidence 8754 4444444
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=274.70 Aligned_cols=202 Identities=25% Similarity=0.322 Sum_probs=155.3
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH-----c-CC----CCCce-----------EEEECCEeCCCCCCh-
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-----G-LL----APDKG-----------EVYIRGRKRAGLISD- 161 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~-----G-l~----~p~~G-----------~I~i~G~~~~~~~~~- 161 (352)
..-|+|||++|+.|.+++|.|+||||||||++.+. . +. .|..+ -|.++..++......
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34699999999999999999999999999999662 1 11 12211 356665544321110
Q ss_pred -h-------hhc----------c-----ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc
Q 018638 162 -E-------EIS----------G-----LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218 (352)
Q Consensus 162 -~-------~~~----------~-----~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~ 218 (352)
. ..+ + ..+.|..++...+..+||.|++.|.... . . .+++.++|+.+||..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~----~--~-~~~~~~~L~~vgL~~ 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI----P--K-IARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh----h--h-HHHHHHHHHHcCCch
Confidence 0 000 0 1256666666666789999999885421 1 1 234678999999987
Q ss_pred -ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEE
Q 018638 219 -VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297 (352)
Q Consensus 219 -~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvI 297 (352)
.+++++.+||||||||++|||+|+.+ ..+|+++||||||+|||+..+..+.++|+++.++| .|||
T Consensus 161 l~l~~~~~~LSgGe~QRl~LAraL~~~----~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g----------~tvI 226 (261)
T cd03271 161 IKLGQPATTLSGGEAQRIKLAKELSKR----STGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKG----------NTVV 226 (261)
T ss_pred hhhcCccccCCHHHHHHHHHHHHHhcC----CCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEE
Confidence 58999999999999999999999963 11379999999999999999999999999998776 5999
Q ss_pred EEcCCHHHHHhhcCEEEEE------eCCeEEEeecc
Q 018638 298 VVTHQHSTIRRAVDRLIFL------YEGKIVWQGMT 327 (352)
Q Consensus 298 ivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~ 327 (352)
+|||+++.+. .||++++| ++|+|+++|++
T Consensus 227 iitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 227 VIEHNLDVIK-CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999986 69999999 89999999863
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=251.02 Aligned_cols=133 Identities=50% Similarity=0.774 Sum_probs=115.3
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++... .....+..++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI--DIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS--HHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc--cccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999999999999999998652 22223346999999999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC----CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP----SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~----~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
| ...+++.++++.+++.+..++.+ .+||+||||||+|||||++ +|++|||||||+
T Consensus 79 ~--------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~-------~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N--------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLK-------NPKLLLLDEPTN 137 (137)
T ss_dssp H--------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT-------TSSEEEEESTTT
T ss_pred c--------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHc-------CCCEEEEeCCCC
Confidence 9 12344778888888866555555 9999999999999999997 699999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=286.55 Aligned_cols=222 Identities=26% Similarity=0.411 Sum_probs=191.3
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+.+.++++|++..- .++||||++++||++||.|-=|||+|-|+++|.|..++++|+|+++|+++... ++.+..+
T Consensus 259 ~~~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~-sp~~Ai~ 333 (500)
T COG1129 259 IGEPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIR-SPRDAIK 333 (500)
T ss_pred CCCcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCC-CHHHHHH
Confidence 356789999988532 58999999999999999999999999999999999999999999999987643 3444445
Q ss_pred ceEEEEecCC---CCCCCCCHHHHHHhh-hhhcC---CCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHH
Q 018638 167 LRIGLVFQSA---ALFDSLTVRENVGFL-LYENS---KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 167 ~~ig~v~Q~~---~l~~~lTV~eni~~~-~~~~~---~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIA 238 (352)
..|+|||.|- .++..++|.+|+.++ +.... -.+.....+.++++.+.+++. .-.+..+.+||||.||||.||
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence 5799999874 688899999999887 22211 245556667788899999995 466789999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|.|.. +|++|||||||.|+|.-++.+++++|++|+++| .+|||+|-++.++..+||||+||++
T Consensus 414 rwL~~-------~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G----------~ail~iSSElpEll~~~DRIlVm~~ 476 (500)
T COG1129 414 RWLAT-------DPKVLILDEPTRGIDVGAKAEIYRLIRELAAEG----------KAILMISSELPELLGLSDRILVMRE 476 (500)
T ss_pred HHHhc-------CCCEEEECCCCcCcccchHHHHHHHHHHHHHCC----------CEEEEEeCChHHHHhhCCEEEEEEC
Confidence 99986 699999999999999999999999999999998 5999999999999999999999999
Q ss_pred CeEEEeeccccc
Q 018638 319 GKIVWQGMTHEF 330 (352)
Q Consensus 319 G~iv~~g~~~~~ 330 (352)
|+|+.+-+.+++
T Consensus 477 Gri~~e~~~~~~ 488 (500)
T COG1129 477 GRIVGELDREEA 488 (500)
T ss_pred CEEEEEeccccC
Confidence 999987755553
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=260.04 Aligned_cols=168 Identities=26% Similarity=0.334 Sum_probs=133.6
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc---------eEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---------GEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~---------G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
++++|++++| +++|+||||||||||+++|+|+++|.. |++.++|++... . ....+|+|+||++..
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~v~~vfq~~~~ 87 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---P--ANFAEVTLTFDNSDG 87 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---C--CceEEEEEEEEcCCC
Confidence 6889999999 999999999999999999999987653 467777765432 1 112469999999976
Q ss_pred CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEe
Q 018638 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLD 258 (352)
+ |+. .. .+++.++++. .+..++.+.+||||||||++|||+|+.. ...+|+++|||
T Consensus 88 ~----------~~~-----~~----~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~---~~~~~~illlD 142 (197)
T cd03278 88 R----------YSI-----IS----QGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIF---RVRPSPFCVLD 142 (197)
T ss_pred c----------eeE-----Ee----hhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHh---ccCCCCEEEEe
Confidence 6 211 01 2345666766 5567889999999999999999999620 00147999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 259 EPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||++||+..+..+.+.|+++++ + .|||+|||+++.+ ++||+++.|..
T Consensus 143 EP~~~LD~~~~~~l~~~l~~~~~-~----------~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 143 EVDAALDDANVERFARLLKEFSK-E----------TQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred CCcccCCHHHHHHHHHHHHHhcc-C----------CEEEEEECCHHHH-hhcceEEEEEe
Confidence 99999999999999999999865 3 4899999999987 57999999864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=267.48 Aligned_cols=205 Identities=21% Similarity=0.264 Sum_probs=149.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-ceEEEECCE-eCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGR-KRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-~G~I~i~G~-~~~~~~~~~~~~~~~i 169 (352)
|+++|. ++|.+..++.+ +. ..+++||||||||||||+++|++++.|+ .|++++.|. ++............+|
T Consensus 6 ~~~~~f-~~~~~~~~~~~----~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVISG----FD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeecc----CC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence 667775 66755433322 22 5599999999999999999999999987 468888776 3221111111123369
Q ss_pred EEEecCC---------CCCCCCCHHHHHHhhhhhcCCC-CHHHHHHHHHHHHHHcCCC--------------------cc
Q 018638 170 GLVFQSA---------ALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLK--------------------GV 219 (352)
Q Consensus 170 g~v~Q~~---------~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~l~~~gL~--------------------~~ 219 (352)
+++||++ .+.+.+||.+|+.++....... ......+++.++|+.+|+. +.
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~ 159 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGV 159 (251)
T ss_pred EEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHh
Confidence 9999985 3456789998886643211101 1223346788999999986 45
Q ss_pred cccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 018638 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (352)
Q Consensus 220 ~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIiv 299 (352)
.++++.+||||||||++|||||+.- -..+|+++|+||||++||+..+..+.+.|+++.+ | .|+|+|
T Consensus 160 ~~~~~~~lS~G~~qr~~la~al~~~---~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g----------~~ii~i 225 (251)
T cd03273 160 WKESLTELSGGQRSLVALSLILALL---LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-G----------SQFIVV 225 (251)
T ss_pred hcccccccCHHHHHHHHHHHHHHHh---hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-C----------CEEEEE
Confidence 5788999999999999999999720 0015899999999999999999999999999853 4 489999
Q ss_pred cCCHHHHHhhcCEEEEEe
Q 018638 300 THQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 300 THdl~~i~~~aDrv~vL~ 317 (352)
||+. ++.+.||+++-+.
T Consensus 226 SH~~-~~~~~~d~v~~~~ 242 (251)
T cd03273 226 SLKE-GMFNNANVLFRTR 242 (251)
T ss_pred ECCH-HHHHhCCEEEEEE
Confidence 9995 4555799998775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=260.70 Aligned_cols=200 Identities=22% Similarity=0.303 Sum_probs=143.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH----------------cCCCCCce--------E
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA----------------GLLAPDKG--------E 147 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~----------------Gl~~p~~G--------~ 147 (352)
|+++| -|+|++..++++++ |++++|+||||||||||+++|+ +++.+++| +
T Consensus 4 i~~~n-fksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 4 VIIQG-FKSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred EEEeC-ccCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 56666 35788888888887 8899999999999999999998 55566666 6
Q ss_pred EEECCEeCC-CCCChhhhccceEEEEecCCCCCC-CCCHHHHHHhhhhhcCCCCHHH-----HHHHHHHHHHHcCCCccc
Q 018638 148 VYIRGRKRA-GLISDEEISGLRIGLVFQSAALFD-SLTVRENVGFLLYENSKMRDEQ-----ISELVKENLAAVGLKGVE 220 (352)
Q Consensus 148 I~i~G~~~~-~~~~~~~~~~~~ig~v~Q~~~l~~-~lTV~eni~~~~~~~~~~~~~~-----~~~~v~~~l~~~gL~~~~ 220 (352)
|.+++.+.. .........++++++++|++.+++ ..|..|...+.. .. +..... .+. +..+.+++.+..
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~-~~-gl~~~~~~~~~~qg---~i~~l~~l~~~~ 152 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLE-SA-GFSRSNPYYIVPQG---KINSLTNMKQDE 152 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHH-Hc-CCCCCCCcEEEEcC---chHHhhhccccc
Confidence 676653211 001111112335999999988877 357766544432 22 221110 011 233345566667
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 018638 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (352)
Q Consensus 221 ~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivT 300 (352)
++++.+||||||||++|||||+... ..+|+++|+||||++||+.++..+++.|+++++ + +++|++|
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~---~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~----------~~ii~~~ 218 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQK---CDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-G----------AQFITTT 218 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhc---cCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEe
Confidence 8899999999999999999996200 014899999999999999999999999999865 4 4888888
Q ss_pred CCHHHHHhhcCEEEEEe
Q 018638 301 HQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 301 Hdl~~i~~~aDrv~vL~ 317 (352)
|+.+ +.++||++++|.
T Consensus 219 h~~~-~~~~~d~i~~l~ 234 (243)
T cd03272 219 FRPE-LLEVADKFYGVK 234 (243)
T ss_pred cCHH-HHhhCCEEEEEE
Confidence 8865 668999999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=252.68 Aligned_cols=201 Identities=22% Similarity=0.249 Sum_probs=143.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEe-CCcEEEEEcCCCchHHHHHHHHHc-CCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIR-HGEAVGIIGPSGTGKSTILKIIAG-LLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~-~Ge~~~IiGpNGsGKSTLlk~l~G-l~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|+++|.. +|.+. .+|+|+.. +|++++|+||||||||||+++|++ |+-+..+....+. ... ..... .....
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~-~~~-~~~~~-~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQEN-LRS-VFAPG-EDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchh-HHH-HhcCC-CccEE
Confidence 48899988 76554 56777654 589999999999999999999996 4444444444321 000 00111 11225
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC--
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT-- 246 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~-- 246 (352)
|+++||+.... .++..+. +.+.++..+.+ .++..++.++.++++.+||||||||++|||||+..+.
T Consensus 78 v~~~f~~~~~~--~~~~r~~--------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~ 145 (213)
T cd03279 78 VSFTFQLGGKK--YRVERSR--------GLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQ 145 (213)
T ss_pred EEEEEEECCeE--EEEEEec--------CCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhh
Confidence 99999987321 1221111 23333322211 3455567788899999999999999999999974100
Q ss_pred -CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 247 -KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 247 -~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
....+|+++||||||++||+..+..+.+.|.++++++ .|+|+|||+++.+..+||+++++++|.
T Consensus 146 ~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~----------~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 146 NRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN----------RMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred hccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEECchHHHHhhCcEEEEEecCC
Confidence 0002589999999999999999999999999997765 599999999999999999999999985
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-34 Score=261.47 Aligned_cols=190 Identities=19% Similarity=0.250 Sum_probs=145.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|.. +|+++.++++++| ++++|+||||||||||+++|. +++|.+.. .....++++
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~------~~~~~~i~~ 63 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS------KMRQKKLSD 63 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH------HhhhhhHHH
Confidence 7888876 8999999999988 899999999999999999997 33454321 111235899
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhc-------CCCCHHHHHH--HHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 172 VFQSAALFDSLTVRENVGFLLYEN-------SKMRDEQISE--LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~-------~~~~~~~~~~--~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
++|+..+++.+|+.+++.+..... .+...+.... ...++++.+++.+..++++..||+|||||++||||++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~ 143 (212)
T cd03274 64 LIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA 143 (212)
T ss_pred HhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence 999988888889988776543211 1111111000 0145667888888888999999999999999999996
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
... ..+|++++|||||+|||+.++..+.+.|++++++ .|+|++||+. ++.++|||+++|..
T Consensus 144 ~~~---~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~-----------~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 144 LHH---YKPTPLYVMDEIDAALDFRNVSIVANYIKERTKN-----------AQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred hcc---cCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCC-----------CEEEEEECcH-HHHHhCCEEEEEEe
Confidence 300 0147999999999999999999999999998644 3899999995 56789999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=256.83 Aligned_cols=229 Identities=26% Similarity=0.442 Sum_probs=198.9
Q ss_pred CCCCCcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC-CCCCCh
Q 018638 84 PEDDGDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR-AGLISD 161 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~-~~~~~~ 161 (352)
+..++++.|+++||+..-.. ...+++|||+|++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+++ ... +.
T Consensus 250 ~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~-~~ 328 (501)
T COG3845 250 PSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRL-SP 328 (501)
T ss_pred CCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccC-CH
Confidence 34456789999999987643 5789999999999999999999999999999999999999999999999996 332 34
Q ss_pred hhhccceEEEEecCC---CCCCCCCHHHHHHhhhhhc------CCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHH
Q 018638 162 EEISGLRIGLVFQSA---ALFDSLTVRENVGFLLYEN------SKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGM 231 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~---~l~~~lTV~eni~~~~~~~------~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGq 231 (352)
..+.+..++|||.|. .+.+.+|+.||+.+..+.. .-.+..++.+.+.++++.+++. .-...+..+||||+
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcc
Confidence 444555799999985 5778899999998865421 1246678888899999999996 45566789999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
+||+-+||=|.. +|++||+.+||-|||..+.+.+.+.|.+.+++| +.|+++|-|++++..+||
T Consensus 409 qQK~IlaREl~~-------~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G----------~AVLLiS~dLDEil~lsD 471 (501)
T COG3845 409 QQKLILARELAR-------RPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG----------KAVLLISEDLDEILELSD 471 (501)
T ss_pred eehhhhhhhhcc-------CCCEEEEcCCCccccHHHHHHHHHHHHHHHhcC----------CEEEEEehhHHHHHHhhh
Confidence 999999999986 699999999999999999999999999999988 589999999999999999
Q ss_pred EEEEEeCCeEEEeeccccc
Q 018638 312 RLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~ 330 (352)
||.||.+|+|+...++++.
T Consensus 472 rIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 472 RIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred eeeeeeCCceecccccccC
Confidence 9999999999998877764
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=240.49 Aligned_cols=239 Identities=24% Similarity=0.353 Sum_probs=189.9
Q ss_pred eEEEEeEEEEe----CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC----CceEEEECCEeCCCCCChh
Q 018638 91 LIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP----DKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 91 ~l~~~nls~~y----~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p----~~G~I~i~G~~~~~~~~~~ 162 (352)
++.++|++..+ |..+++++||+++.+||+-|+||.||||||-..|.|+|..+- +.-...|++.++..+...+
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 47788888887 346799999999999999999999999999999999998763 3456677877776654332
Q ss_pred hh--ccceEEEEecCCC--CCCCCCHHHHHHhh--hhhcCCCCH---HHHHHHHHHHHHHcCCCc---ccccCCCCCChH
Q 018638 163 EI--SGLRIGLVFQSAA--LFDSLTVRENVGFL--LYENSKMRD---EQISELVKENLAAVGLKG---VEDRLPSELSGG 230 (352)
Q Consensus 163 ~~--~~~~ig~v~Q~~~--l~~~lTV~eni~~~--~~~~~~~~~---~~~~~~v~~~l~~~gL~~---~~~~~~~~LSGG 230 (352)
++ ....|+++||+|. |-|.-+|...+.-. .+.+.+... .-.++++-++|.++|+.+ ....+|.+|--|
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeG 162 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEG 162 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccC
Confidence 21 1235999999984 56665665443221 111111100 011345678999999964 566899999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
|-|+|.||.|++. +|++||.||||+++|+.++.+++.+|.++.+... +||++++||+..+.+.|
T Consensus 163 E~QKVMIA~A~An-------qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~---------TtILL~s~Dl~~is~W~ 226 (330)
T COG4170 163 ECQKVMIAIALAN-------QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN---------TTILLISHDLQMISQWA 226 (330)
T ss_pred cceeeeeehhhcc-------CCceEeccCCCcccCccHHHHHHHHHHHhhccCC---------ceEEEEcccHHHHHHHh
Confidence 9999999999985 7999999999999999999999999999987642 69999999999999999
Q ss_pred CEEEEEeCCeEEEeecccccc-cCCcHHHHHHhcCC
Q 018638 311 DRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 345 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~~ 345 (352)
|+|-||..|+-++.++++++. .+.|||++.++...
T Consensus 227 d~i~VlYCGQ~~ESa~~e~l~~~PhHPYTqALi~a~ 262 (330)
T COG4170 227 DKINVLYCGQTVESAPSEELVTMPHHPYTQALIRAI 262 (330)
T ss_pred hheEEEEecccccccchhHHhcCCCCchHHHHHHhC
Confidence 999999999999999888865 57789999998763
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=280.45 Aligned_cols=138 Identities=27% Similarity=0.368 Sum_probs=116.4
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC---cEEEE
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEP---EVLLY 257 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p---~llLL 257 (352)
+||.|++.|.... . .+. ...+.|+.+||.. .+++.+.+||||||||++|||+|+. +| +++||
T Consensus 792 ltv~E~l~~f~~~----~--~i~-~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~-------~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAI----P--KIA-RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSK-------RSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhc----h--hhh-HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhc-------CCCCCeEEEE
Confidence 6888888774321 1 122 2457899999986 5799999999999999999999997 47 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeecccccc
Q 018638 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFT 331 (352)
Q Consensus 258 DEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~~ 331 (352)
||||+|||+..+..++++|+++.++| .|||+|||+++.+. .||+|++| ++|+|++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G----------~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKG----------NTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999998776 59999999999985 69999999 799999999999987
Q ss_pred cCCcHHHHHHhcC
Q 018638 332 SSSNPIVQQFASG 344 (352)
Q Consensus 332 ~~~~~~~~~~~~~ 344 (352)
......+.+++..
T Consensus 927 ~~~~s~t~~~l~~ 939 (943)
T PRK00349 927 KVEASYTGRYLKP 939 (943)
T ss_pred hCcccHHHHHHHH
Confidence 6555667777754
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=286.63 Aligned_cols=222 Identities=22% Similarity=0.350 Sum_probs=164.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHH---------HHHcCCCCCc----eE----EEECC
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK---------IIAGLLAPDK----GE----VYIRG 152 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk---------~l~Gl~~p~~----G~----I~i~G 152 (352)
..|+++|++. ..|+++||+|++||+++|+|+||||||||++ .|.|...+-. +. |.++-
T Consensus 599 ~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ 673 (1809)
T PRK00635 599 GTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR 673 (1809)
T ss_pred CeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence 3689998873 3799999999999999999999999999999 6666543311 11 22222
Q ss_pred EeCCCCCC--h-h------hhc---------c---c-eEEEEecC------------------C----------------
Q 018638 153 RKRAGLIS--D-E------EIS---------G---L-RIGLVFQS------------------A---------------- 176 (352)
Q Consensus 153 ~~~~~~~~--~-~------~~~---------~---~-~ig~v~Q~------------------~---------------- 176 (352)
.++..... . . ..+ + . ...|.|+. +
T Consensus 674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~ 753 (1809)
T PRK00635 674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP 753 (1809)
T ss_pred CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence 11110000 0 0 000 0 0 12223331 0
Q ss_pred ----CCCCCCCHHHHHHhhhhhcC--CCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 177 ----ALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 177 ----~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
..|...||.|++.+...... ....+++.+++ ++|+.+||.+. +++.+.+|||||||||+|||||+.. +
T Consensus 754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~----~ 828 (1809)
T PRK00635 754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAP----S 828 (1809)
T ss_pred HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhc----C
Confidence 24667899999988764321 12344566666 58999999886 7999999999999999999999730 1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe------CCeEEE
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY------EGKIVW 323 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~------~G~iv~ 323 (352)
.+|++|||||||+|||+..+..++++|++++++| .|||+|||+++.+ .+||++++|. +|++++
T Consensus 829 ~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G----------~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~ 897 (1809)
T PRK00635 829 KKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG----------HTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLA 897 (1809)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEE
Confidence 2699999999999999999999999999998776 5999999999999 7899999996 799999
Q ss_pred eeccccccc
Q 018638 324 QGMTHEFTS 332 (352)
Q Consensus 324 ~g~~~~~~~ 332 (352)
.|+++++..
T Consensus 898 ~Gtpeel~~ 906 (1809)
T PRK00635 898 SCSPEELIH 906 (1809)
T ss_pred eCCHHHHHh
Confidence 999988754
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-31 Score=254.45 Aligned_cols=248 Identities=24% Similarity=0.310 Sum_probs=186.9
Q ss_pred hhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEE
Q 018638 20 SSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYK 99 (352)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~ 99 (352)
-+|+..+...- -....++.+.+++.+.--.|+......+.. .|+ -..|+++||.+
T Consensus 276 r~pL~s~vgil-----P~l~~AqvA~~kiakle~~~~~a~~~~~q~------------------~p~--~~~lelrnvrf 330 (546)
T COG4615 276 RTPLLSAVGIL-----PTLLTAQVAFNKIAKLELAPYKADFPRPQA------------------FPD--WKTLELRNVRF 330 (546)
T ss_pred hhHHHHHHhhh-----hHHHHHHHHHHHHHHhhcCCccccCCCCCc------------------CCc--ccceeeeeeee
Confidence 44554443333 367788889999998887775433322111 111 12499999999
Q ss_pred EeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 100 SFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 100 ~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
.|... .-+..||++|++||++.|+|.||||||||++++.||++|++|+|++||+++.... .++. |.-++-||-|.+|
T Consensus 331 ay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~-ledY-R~LfSavFsDyhL 408 (546)
T COG4615 331 AYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQ-LEDY-RKLFSAVFSDYHL 408 (546)
T ss_pred ccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCC-HHHH-HHHHHHHhhhHhh
Confidence 99764 5689999999999999999999999999999999999999999999999886532 2222 2237889999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc---ccccC--CCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRL--PSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~---~~~~~--~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
|+.+--.|+- .+ .+.++.+|+++.+.+ ..+.. +-.||-|||+|+|+--||+. +.+
T Consensus 409 F~~ll~~e~~---------as----~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE-------eR~ 468 (546)
T COG4615 409 FDQLLGPEGK---------AS----PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE-------ERD 468 (546)
T ss_pred hHhhhCCccC---------CC----hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh-------hCC
Confidence 8853111110 12 233566677666643 33333 46899999999999999996 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIR-SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~-~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|+++||=-+--||.-++.+.+.+- .++++| +||+.||||-.-. .+|||++.|++|++++..
T Consensus 469 Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qG----------KTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 469 ILVLDEWAADQDPAFRREFYQVLLPLLKEQG----------KTIFAISHDDHYF-IHADRLLEMRNGQLSELT 530 (546)
T ss_pred eEEeehhhccCChHHHHHHHHHHhHHHHHhC----------CeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence 999999999999999999986554 456777 5999999997765 467999999999998875
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=237.94 Aligned_cols=166 Identities=24% Similarity=0.311 Sum_probs=129.1
Q ss_pred eeEEEeCCcEEEEEcCCCchHHHHHHHHH----cCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCC-----CCCC
Q 018638 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIA----GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA-----ALFD 180 (352)
Q Consensus 110 vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~----Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~-----~l~~ 180 (352)
.++++.+| +++|+||||||||||+++|. |...|++|.+..+.+.+.. . ..+..|+++||++ ....
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~--~~~~~v~~~f~~~~~~~~~v~r 89 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---G--EVRAQVKLAFENANGKKYTITR 89 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---C--CCcEEEEEEEEeCCCCEEEEEE
Confidence 34566677 99999999999999999995 9999988877622221111 1 1223699999987 3445
Q ss_pred CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHH------HHHHHHHhccCCCCCCCCcE
Q 018638 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKR------VALARSIIFDNTKESVEPEV 254 (352)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQR------vaIArAL~~~~~~~a~~p~l 254 (352)
.+|+++|+.+. ...+ +.+.+ ++.+.+||+||+|| ++||||++. +|++
T Consensus 90 ~~~~~~~~~~~-------~~~~----~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~-------~p~i 142 (204)
T cd03240 90 SLAILENVIFC-------HQGE----SNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGS-------NCGI 142 (204)
T ss_pred EhhHhhceeee-------chHH----HHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhcc-------CCCE
Confidence 56899998663 1121 22222 77899999999996 789999986 6999
Q ss_pred EEEeCCCCCCCHHHHH-HHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 255 LLYDEPTAGLDPIAST-VVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 255 lLLDEPtsgLD~~~~~-~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
+|+||||++||+..+. .+.++|++++++ + .|||++||+++.+. .||++++|++.
T Consensus 143 lllDEP~~~LD~~~~~~~l~~~l~~~~~~~~----------~~iiiitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 143 LALDEPTTNLDEENIEESLAEIIEERKSQKN----------FQLIVITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred EEEcCCccccCHHHHHHHHHHHHHHHHhccC----------CEEEEEEecHHHHh-hCCEEEEEeeC
Confidence 9999999999999999 999999999775 4 59999999999875 68999999643
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=261.79 Aligned_cols=203 Identities=28% Similarity=0.388 Sum_probs=166.7
Q ss_pred CcceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 88 GDVLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
+.|.|.+.||+|.|.+. .++++++|-|..++.+++|||||||||||||+++|.+.|..|.|.-.-..
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~------------ 453 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN------------ 453 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc------------
Confidence 45789999999999765 58899999999999999999999999999999999999999998654321
Q ss_pred ceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhc
Q 018638 167 LRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 167 ~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
++++.-|+. .+--+.++.|++.-.+ .. ....+.+..++.++||. +....+.++||+|||.||.+|+.+++
T Consensus 454 -~~~~y~Qh~~e~ldl~~s~le~~~~~~---~~---~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 454 -KLPRYNQHLAEQLDLDKSSLEFMMPKF---PD---EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred -cchhhhhhhHhhcCcchhHHHHHHHhc---cc---cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhc
Confidence 355555653 2322467777764321 11 22245578899999998 56678889999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE-E
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI-V 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i-v 322 (352)
+|.+|||||||+|||..+...+.+.|.++ .| +||+||||...+..++++|++..+|.+ .
T Consensus 527 -------qP~lLlLDEPtnhLDi~tid~laeaiNe~--~G-----------gvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 527 -------QPHLLLLDEPTNHLDIETIDALAEAINEF--PG-----------GVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred -------CCcEEEecCCCcCCCchhHHHHHHHHhcc--CC-----------ceeeeechhhHHHHHHHHhHhhccCceee
Confidence 69999999999999999999999999875 33 799999999999999999999999876 4
Q ss_pred Eeecccc
Q 018638 323 WQGMTHE 329 (352)
Q Consensus 323 ~~g~~~~ 329 (352)
+.|+...
T Consensus 587 ~~G~i~~ 593 (614)
T KOG0927|consen 587 WDGDIEI 593 (614)
T ss_pred cCccHHH
Confidence 5565443
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-30 Score=275.31 Aligned_cols=217 Identities=30% Similarity=0.442 Sum_probs=184.5
Q ss_pred eEEEEeEEEEe----CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCceEEEECCEeCCCCCChhhh
Q 018638 91 LIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--PDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 91 ~l~~~nls~~y----~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
+...+|+.+.- +.+++|+|||=-++||-.+||+|+|||||||||++|+|-.. ..+|+|+++|.+..+ ...
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q----~tF 862 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ----ETF 862 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch----hhh
Confidence 45556666554 45789999999999999999999999999999999999754 257999999987531 222
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHcCCCcccccCCCC----CChHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLPSE----LSGGMKKRVALA 238 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~----LSGGqrQRvaIA 238 (352)
++.+|||-|+....+.+||+|-+.|.+..+ ...+.++..+.|+++++.++|+++.+..++. ||..||+|+.||
T Consensus 863 -~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 863 -ARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIG 941 (1391)
T ss_pred -ccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEE
Confidence 336999999988789999999999987644 2345666678899999999999999888876 999999999999
Q ss_pred HHHhccCCCCCCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHHhhcCEEEEE
Q 018638 239 RSIIFDNTKESVEP-EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLIFL 316 (352)
Q Consensus 239 rAL~~~~~~~a~~p-~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~~~aDrv~vL 316 (352)
--|+. +| .||+|||||||||..+...+++.+++++..| .|||.+=|+++ .+.+..|++++|
T Consensus 942 VELvA-------~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tG----------qtIlCTIHQPS~~ife~FD~LLLL 1004 (1391)
T KOG0065|consen 942 VELVA-------NPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTG----------QTILCTIHQPSIDIFEAFDELLLL 1004 (1391)
T ss_pred EEEec-------CCceeEEecCCCCCccHHHHHHHHHHHHHHHhcC----------CeEEEEecCCcHHHHHHHhHHHHH
Confidence 99986 69 8999999999999999999999999999988 49999999996 566677999999
Q ss_pred e-CCeEEEeecccc
Q 018638 317 Y-EGKIVWQGMTHE 329 (352)
Q Consensus 317 ~-~G~iv~~g~~~~ 329 (352)
+ .|+.+..|+..+
T Consensus 1005 krGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 1005 KRGGQTVYFGPLGE 1018 (1391)
T ss_pred hcCCeEEEecCccc
Confidence 7 568999997644
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=256.37 Aligned_cols=190 Identities=27% Similarity=0.377 Sum_probs=156.8
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 89 ~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+..|+++||+..-++ +..|++.||+|++||.+-|.||||||||||+|+|+||+|.-+|+|.+-. ..
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-------------~~ 456 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-------------DS 456 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-------------CC
Confidence 467999999999865 6789999999999999999999999999999999999999999887531 11
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC------CCCChHHHHHHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP------SELSGGMKKRVALARSI 241 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~------~~LSGGqrQRvaIArAL 241 (352)
.+-|+||.|++.. .|.+|-|.++..... .++ +.+.++|.++||.++.++.- ..||+|||||+++||.|
T Consensus 457 ~~lflpQ~PY~p~-GtLre~l~YP~~~~~-~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil 530 (604)
T COG4178 457 ALLFLPQRPYLPQ-GTLREALCYPNAAPD-FSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL 530 (604)
T ss_pred ceEEecCCCCCCC-ccHHHHHhCCCCCCC-CCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH
Confidence 4789999999765 599999998753321 333 34778899999987665532 68999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
++ +|++++|||.|++||+.++..+++++++--. + +|||-|+|+.....-. ++.+-+
T Consensus 531 L~-------kP~~v~LDEATsALDe~~e~~l~q~l~~~lp-~----------~tvISV~Hr~tl~~~h-~~~l~l 586 (604)
T COG4178 531 LH-------KPKWVFLDEATSALDEETEDRLYQLLKEELP-D----------ATVISVGHRPTLWNFH-SRQLEL 586 (604)
T ss_pred Hc-------CCCEEEEecchhccChHHHHHHHHHHHhhCC-C----------CEEEEeccchhhHHHH-hhheee
Confidence 97 6999999999999999999999999976322 2 6999999997765544 554444
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=242.76 Aligned_cols=191 Identities=30% Similarity=0.449 Sum_probs=154.9
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+.+++..+++|.||+. .|+-=.=+|..||+++++||||-||||+.++|+|.++|++|+ ..+ .+
T Consensus 340 ~~lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~------------~~ 402 (591)
T COG1245 340 DTLVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED------------LK 402 (591)
T ss_pred ceeeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc------------ce
Confidence 4567777888888754 344445567788999999999999999999999999999998 211 15
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|+|=||--.--...||.+.+.-..... ..... .-.++++-++|++.+++++.+|||||.||||||.||.+
T Consensus 403 vSyKPQyI~~~~~gtV~~~l~~~~~~~--~~~s~---~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~r----- 472 (591)
T COG1245 403 VSYKPQYISPDYDGTVEDLLRSAIRSA--FGSSY---FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSR----- 472 (591)
T ss_pred EeecceeecCCCCCcHHHHHHHhhhhh--cccch---hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhcc-----
Confidence 889999643333579999875533211 11111 13467888999999999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
+++++|||||+|.||.+.+..+-+.|+++..+.+ +|.++|.||+-.+.-++||++|++
T Consensus 473 --eADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~---------kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 473 --EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNE---------KTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred --ccCEEEecCchhhccHHHHHHHHHHHHHHHhhcC---------ceEEEEecceehhhhhhceEEEEe
Confidence 6999999999999999999999999999987643 699999999999999999999885
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=245.07 Aligned_cols=212 Identities=26% Similarity=0.434 Sum_probs=155.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC--CEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR--GRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~--G~~~~~~~~~~~~~~~~i 169 (352)
+.+.|++++|.++.+++|++|++.+|+.+||+|+|||||||+|++|+|-..|..-.+-+. .+++.. +... -+
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~p--s~~~----av 149 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEP--SEKQ----AV 149 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCC--chHH----HH
Confidence 999999999999999999999999999999999999999999999999999866554432 222110 1100 01
Q ss_pred EEEec--------------CCCCC-CC--CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CcccccCCCCCChHH
Q 018638 170 GLVFQ--------------SAALF-DS--LTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLPSELSGGM 231 (352)
Q Consensus 170 g~v~Q--------------~~~l~-~~--lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL-~~~~~~~~~~LSGGq 231 (352)
-++++ +.... +. .--.+++.. +....+.+..+.++.++|.-+|. .+..++...+||||+
T Consensus 150 ~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~---r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 150 QAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYE---RLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHH---HHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 11111 00000 00 000011110 01113344455556667776765 468889999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|.|++|||||.. +|++|||||||++||+.+..-+.+.|.+..+ .++|+++|+.+++-.+|.
T Consensus 227 rmR~aLAr~Lf~-------kP~LLLLDEPtnhLDleA~~wLee~L~k~d~------------~~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 227 RMRAALARALFQ-------KPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR------------IILVIVSHSQDFLNGVCT 287 (614)
T ss_pred HHHHHHHHHHhc-------CCCEEEecCCccCCCHHHHHHHHHHHHhccC------------ceEEEEecchhhhhhHhh
Confidence 999999999996 6999999999999999999999988876532 279999999999999999
Q ss_pred EEEEEeCCe-EEEeecccccc
Q 018638 312 RLIFLYEGK-IVWQGMTHEFT 331 (352)
Q Consensus 312 rv~vL~~G~-iv~~g~~~~~~ 331 (352)
.|+.|++++ +.+.|+-+++.
T Consensus 288 ~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 288 NIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred hhheecccceeeecCCHHHHh
Confidence 999999999 67777666553
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-28 Score=220.34 Aligned_cols=180 Identities=21% Similarity=0.213 Sum_probs=129.1
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~ 185 (352)
.++++++++.+| +.+|+||||||||||+.+|...+..+.. ....|.....+.... .....|.+.||+..+++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~-~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDG-ESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCC-CCeEEEEEEEEcCCccC-----
Confidence 357788888887 8899999999999999999855433321 111232111110000 01225899999887665
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCC
Q 018638 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (352)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD 265 (352)
| . ... ..++.+.++++. .+..++++.+||+|||||++||+|++. ..+.+|+++||||||++||
T Consensus 83 -~---~------~~~-~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~---~~~~~p~illlDEP~~glD 145 (198)
T cd03276 83 -N---P------LCV-LSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSL---WEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred -C---c------CCH-HHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHH---hcccCCCEEEecCcccccC
Confidence 1 0 111 112446667766 667788999999999999999999941 0002699999999999999
Q ss_pred HHHHHHHHHHHHHHHHc--CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 266 PIASTVVEDLIRSVHKK--GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 266 ~~~~~~l~~ll~~l~~~--g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+..+..+.+.|.++.++ +. .|||++||+++.+..+ |+|.+|..++
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~~---------~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 146 MVNRKISTDLLVKEAKKQPGR---------QFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHHHhcCCCc---------EEEEEECCcccccccc-cceeEEEecC
Confidence 99999999999998653 21 5899999999999987 9999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=256.20 Aligned_cols=127 Identities=29% Similarity=0.379 Sum_probs=104.4
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP 260 (352)
+||.|.+.|.... . .+. ...++|+.+||.. .+++++.+|||||+||++||++|+.+ ..+|+++|||||
T Consensus 790 ~tv~e~~~f~~~~----~--~i~-~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~----~~~p~llILDEP 858 (924)
T TIGR00630 790 MTVEEAYEFFEAV----P--SIS-RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKR----STGRTLYILDEP 858 (924)
T ss_pred CcHHHHHHHHHhc----c--chh-HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhc----CCCCCEEEEECC
Confidence 5666666663211 1 111 2457899999976 57999999999999999999999852 124899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeeccccc
Q 018638 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEF 330 (352)
Q Consensus 261 tsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~ 330 (352)
|+|||+..+..++++|+++.++| .|||+|||+++.+. .||+|++| ++|+|++.|+++++
T Consensus 859 tsgLD~~~~~~L~~~L~~l~~~G----------~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 859 TTGLHFDDIKKLLEVLQRLVDQG----------NTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999998776 59999999999985 69999999 79999999987664
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-28 Score=229.81 Aligned_cols=202 Identities=19% Similarity=0.227 Sum_probs=131.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe-CCCCCCh--hhhccce
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-RAGLISD--EEISGLR 168 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~-~~~~~~~--~~~~~~~ 168 (352)
|+++|. ++|.+...+ .+.++ +++|+||||||||||+.+|++++.++.|++...+.+ +...... .......
T Consensus 4 i~l~nf-~~~~~~~~~-----~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~ 76 (247)
T cd03275 4 LELENF-KSYKGRHVI-----GPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAY 76 (247)
T ss_pred EEEECc-cccCCCeee-----cCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEE
Confidence 778886 667543333 33344 999999999999999999999999888887654421 1000000 0000113
Q ss_pred EEEEe--cCCCC-CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc--------------ccc--------cC
Q 018638 169 IGLVF--QSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG--------------VED--------RL 223 (352)
Q Consensus 169 ig~v~--Q~~~l-~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~--------------~~~--------~~ 223 (352)
|..+| |++.. +-..++.+.... + ...+. ....+.+.++++.+|+.. ..+ ++
T Consensus 77 v~~~f~~~~~~~~~~~~~~~~~~~~-~-~ingk--~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~ 152 (247)
T cd03275 77 VTAVYEDDDGEEKTFRRIITGGSSS-Y-RINGK--VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRD 152 (247)
T ss_pred EEEEEEcCCCcEEEEEEEEECCceE-E-EECCE--EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhh
Confidence 44444 44321 111122221111 0 01111 111234567888888842 222 33
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH
Q 018638 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (352)
Q Consensus 224 ~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl 303 (352)
+.+||+|||||++||||++.++ ..+|+++||||||++||+..+..+.+.|++++++| .+||+|||+.
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~---~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g----------~~vi~isH~~ 219 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHS---YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPN----------FQFIVISLKE 219 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhc---cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCC----------cEEEEEECCH
Confidence 4899999999999999998410 01389999999999999999999999999997665 5999999997
Q ss_pred HHHHhhcCEEEEEeC
Q 018638 304 STIRRAVDRLIFLYE 318 (352)
Q Consensus 304 ~~i~~~aDrv~vL~~ 318 (352)
+.+ ..||++++|.+
T Consensus 220 ~~~-~~~d~i~~~~~ 233 (247)
T cd03275 220 EFF-SKADALVGVYR 233 (247)
T ss_pred HHH-hhCCeEEEEEe
Confidence 765 67999999864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-27 Score=233.70 Aligned_cols=198 Identities=26% Similarity=0.358 Sum_probs=163.8
Q ss_pred CcceEEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 88 GDVLIDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~--~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
..|.|++.+|+|.|... ..+.++++.+..-+.++++|+||+||||++|++.|-+.|.+|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~------------- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP------------- 425 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-------------
Confidence 45789999999999654 489999999999999999999999999999999999999999887654
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
+.+|+|-+|+-.=+-.++|-+ +.+....+.+..+ +.++..|..+||+ +...+.+..||||||-||++|.+...
T Consensus 426 r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~pG~~~----ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~- 499 (582)
T KOG0062|consen 426 RLRIKYFAQHHVDFLDKNVNA-VDFMEKSFPGKTE----EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWN- 499 (582)
T ss_pred cceecchhHhhhhHHHHHhHH-HHHHHHhCCCCCH----HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcC-
Confidence 236999999753222344433 2232223344433 4467789999997 56677789999999999999999986
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|.+|+|||||+.||..+...+-+.|+.+ +| .||+||||.+++...|+.+|+.++|++..
T Consensus 500 ------~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~G-----------GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 500 ------NPHLLVLDEPTNHLDRDSLGALAKALKNF--NG-----------GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred ------CCcEEEecCCCccccHHHHHHHHHHHHhc--CC-----------cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 69999999999999999999998888876 34 69999999999999999999999999865
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-27 Score=234.98 Aligned_cols=200 Identities=26% Similarity=0.389 Sum_probs=150.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|.+.+.+..||++.+|++-++++..|..+||+|+||+|||||||+|+. |+|.....+ ++.+ =-+
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve-------qE~~---g~~ 144 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE-------QEVR---GDD 144 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch-------hhee---ccc
Confidence 889999999999999999999999999999999999999999999998 555544321 1111 112
Q ss_pred EecC-CCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 172 VFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 172 v~Q~-~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
++-. ..+..+.++.+.+.--....... ...+...++|.-+|.+ +...++..+||||.|.|++|||||..
T Consensus 145 t~~~~~~l~~D~~~~dfl~~e~~l~~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~------ 215 (582)
T KOG0062|consen 145 TEALQSVLESDTERLDFLAEEKELLAGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFA------ 215 (582)
T ss_pred hHHHhhhhhccHHHHHHHHhhhhhhccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhc------
Confidence 2211 12333334444332211111111 2223344488899996 46677889999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE-EEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI-VWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i-v~~g~~~ 328 (352)
+|+||||||||+.||..+..-+.+.|..+. .|+|+||||-.++..+|..|+.+++-|+ ...|.-+
T Consensus 216 -~pDlLLLDEPTNhLDv~av~WLe~yL~t~~-------------~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 216 -KPDLLLLDEPTNHLDVVAVAWLENYLQTWK-------------ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred -CCCEEeecCCcccchhHHHHHHHHHHhhCC-------------ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 699999999999999999999998887653 4999999999999999999999998776 4456555
Q ss_pred cc
Q 018638 329 EF 330 (352)
Q Consensus 329 ~~ 330 (352)
+|
T Consensus 282 ~F 283 (582)
T KOG0062|consen 282 QF 283 (582)
T ss_pred HH
Confidence 54
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-26 Score=230.01 Aligned_cols=199 Identities=22% Similarity=0.288 Sum_probs=160.2
Q ss_pred CcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 88 GDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
.+.+|++++|+..-++ ..+++|+||+|++|+-+-|.||||||||+|+|+++|||+-.+|++..-.+.- +
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-----~---- 500 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-----P---- 500 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-----C----
Confidence 3467999999998865 4567889999999999999999999999999999999999999998644311 1
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKR 234 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGqrQR 234 (352)
..+-|+||.|++-. .|.+|.+.|+........+....+++...|+.++|.+.+.+- ...||+|||||
T Consensus 501 -~~lfflPQrPYmt~-GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTL-GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred -CceEEecCCCCccc-cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH
Confidence 24889999998654 599999999854322222222234567777877776554442 26899999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
++.||-+.+ +|++-||||-||++|...+..+.+.+++. | +|.|-|+|+-+...-. |.++
T Consensus 579 La~ARLfy~-------kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---g----------iT~iSVgHRkSL~kfH-d~~L 637 (659)
T KOG0060|consen 579 LAFARLFYH-------KPKFAILDECTSAVTEDVEGALYRKCREM---G----------ITFISVGHRKSLWKFH-DYVL 637 (659)
T ss_pred HHHHHHHhc-------CCceEEeechhhhccHHHHHHHHHHHHHc---C----------CeEEEeccHHHHHhhh-hEEE
Confidence 999999997 69999999999999999998888877653 4 6999999999987765 9999
Q ss_pred EEeC
Q 018638 315 FLYE 318 (352)
Q Consensus 315 vL~~ 318 (352)
-|+.
T Consensus 638 ~~~g 641 (659)
T KOG0060|consen 638 RMDG 641 (659)
T ss_pred EecC
Confidence 8875
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=225.36 Aligned_cols=197 Identities=30% Similarity=0.443 Sum_probs=159.7
Q ss_pred CCCCCcceEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 84 PEDDGDVLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
++.-..|+|-+.||+|.| |.++.+++++|-|.=...+|||||||.||||||++|.|-+.|..|+.+-+.
T Consensus 579 p~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh---------- 648 (807)
T KOG0066|consen 579 PTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH---------- 648 (807)
T ss_pred CCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc----------
Confidence 334456889999999999 557789999999999999999999999999999999999999999875332
Q ss_pred hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc-cCCCCCChHHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-RLPSELSGGMKKRVALAR 239 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~-~~~~~LSGGqrQRvaIAr 239 (352)
+.+||+.-|+. .|-..-|..|++.-.+ +.+.. .+...|-.+||...++ -.+..|||||+-||++|-
T Consensus 649 ---rL~iG~FdQh~~E~L~~Eetp~EyLqr~F----Nlpyq----~ARK~LG~fGL~sHAHTikikdLSGGQKaRValae 717 (807)
T KOG0066|consen 649 ---RLRIGWFDQHANEALNGEETPVEYLQRKF----NLPYQ----EARKQLGTFGLASHAHTIKIKDLSGGQKARVALAE 717 (807)
T ss_pred ---eeeeechhhhhHHhhccccCHHHHHHHhc----CCChH----HHHHHhhhhhhhhccceEeeeecCCcchHHHHHHH
Confidence 33799999986 4544567777765432 23433 3567899999965444 367899999999999998
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
.-+. .|+||||||||++||.++...+-+.|.++. | .|||||||-..+.+..=.+||+++-
T Consensus 718 Lal~-------~PDvlILDEPTNNLDIESIDALaEAIney~--G-----------gVi~VsHDeRLi~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 718 LALG-------GPDVLILDEPTNNLDIESIDALAEAINEYN--G-----------GVIMVSHDERLIVETDCNLWVVENQ 777 (807)
T ss_pred HhcC-------CCCEEEecCCCCCcchhhHHHHHHHHHhcc--C-----------cEEEEecccceeeecCceEEEEccC
Confidence 7665 699999999999999999999999998863 3 6999999999887765567887765
Q ss_pred eE
Q 018638 320 KI 321 (352)
Q Consensus 320 ~i 321 (352)
.|
T Consensus 778 ~i 779 (807)
T KOG0066|consen 778 GI 779 (807)
T ss_pred Ch
Confidence 54
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-24 Score=191.48 Aligned_cols=210 Identities=21% Similarity=0.274 Sum_probs=162.2
Q ss_pred CcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 88 GDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
++..|+++++.|+|.. .+++-|+|++++.|....+||.||||||||||+|+|-.-.-.|.|.+.|.+......-. ..
T Consensus 10 ~~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~--~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE--SS 87 (291)
T ss_pred ccceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc--cc
Confidence 3456999999999964 57999999999999999999999999999999999987777799999998754311100 01
Q ss_pred ceEEEEec----------CCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHH
Q 018638 167 LRIGLVFQ----------SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 167 ~~ig~v~Q----------~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRva 236 (352)
-...|+-- +..+-.++++.+-| |+.. +... ++-+++++.++++ +..+.+.+|-|||+||.
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~---g~dp----~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQ 157 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG---GDDP----ERREKLIDILDID--LRWRMHKVSDGQRRRVQ 157 (291)
T ss_pred CceeEecccccccccccccccccccccHHHHH-hhcc---CCCh----hHhhhhhhheecc--ceEEEeeccccchhhhH
Confidence 12344332 12222356775544 5431 2222 2234566666664 55678899999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|++.|++ .=++|||||-|--||..++..+++.+++-.++.+ +|||+.||-.+-++....+++.|
T Consensus 158 icMGLL~-------PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rg---------atIVYATHIFDGLe~Wpthl~yi 221 (291)
T KOG2355|consen 158 ICMGLLK-------PFKVLLLDEVTVDLDVLARADLLEFLKEECEQRG---------ATIVYATHIFDGLETWPTHLVYI 221 (291)
T ss_pred HHHhccc-------ceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcC---------cEEEEEeeeccchhhcchhEEEe
Confidence 9999996 2499999999999999999999999999776521 79999999999999999999999
Q ss_pred eCCeEEEee
Q 018638 317 YEGKIVWQG 325 (352)
Q Consensus 317 ~~G~iv~~g 325 (352)
++|+|+..-
T Consensus 222 ~~Gkl~~~l 230 (291)
T KOG2355|consen 222 KSGKLVDNL 230 (291)
T ss_pred cCCeeeecc
Confidence 999998743
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=197.83 Aligned_cols=147 Identities=18% Similarity=0.272 Sum_probs=111.7
Q ss_pred eeEeeeEEEeCCc-EEEEEcCCCchHHHHHHHHH--------cCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCC
Q 018638 106 ILRGVSFKIRHGE-AVGIIGPSGTGKSTILKIIA--------GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (352)
Q Consensus 106 ~L~~vsl~i~~Ge-~~~IiGpNGsGKSTLlk~l~--------Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~ 176 (352)
.+-++||++.+|+ +++|+||||||||||+|+|+ |+.-|....+ .++|+.|..
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-------------------~~~~~~~~~ 76 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-------------------SLPVFENIF 76 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-------------------cCcCccEEE
Confidence 3568999999995 89999999999999999998 4333321000 123322221
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEE
Q 018638 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (352)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llL 256 (352)
. .++..+..++..+++|+||||++.|++++. +|+++|
T Consensus 77 ~-----------------------------------~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~--------~p~lll 113 (200)
T cd03280 77 A-----------------------------------DIGDEQSIEQSLSTFSSHMKNIARILQHAD--------PDSLVL 113 (200)
T ss_pred E-----------------------------------ecCchhhhhcCcchHHHHHHHHHHHHHhCC--------CCcEEE
Confidence 1 112222344556799999999999999863 699999
Q ss_pred EeCCCCCCCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 257 YDEPTAGLDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 257 LDEPtsgLD~~~~~~l~-~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+||||++||+..+..+. .+++++.+.+ .++|++||+. .+..+||++++|++|+++.++
T Consensus 114 lDEp~~glD~~~~~~i~~~~l~~l~~~~----------~~vi~~tH~~-~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 114 LDELGSGTDPVEGAALAIAILEELLERG----------ALVIATTHYG-ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEECCHH-HHHHHHhcCCCeEEEEEEEec
Confidence 99999999999999986 5788887665 5999999985 556789999999999998774
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-24 Score=194.85 Aligned_cols=189 Identities=20% Similarity=0.243 Sum_probs=114.2
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
++++.+++.+| +.+|+|||||||||||.+|.-.+-.+.... ........+.... .....|-..++...- .. ..+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~~~~~~i~~g-~~~~~v~~~~~~~~~--~~-~~~ 87 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAKKVGEFVKRG-CDEGTIEIELYGNPG--NI-QVD 87 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccccCHHHHhhCC-CCcEEEEEEEEeCCC--cc-ccC
Confidence 35667777665 789999999999999999986663222110 0110000000000 000123333332110 00 112
Q ss_pred HHHhhhhh-----cCCCCHHHHHHHHHHHHHHcCC-CcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC
Q 018638 187 NVGFLLYE-----NSKMRDEQISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (352)
Q Consensus 187 ni~~~~~~-----~~~~~~~~~~~~v~~~l~~~gL-~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP 260 (352)
|+.+.... ...+.. .+.+..++- .++.+..+.+||+|||||+.+|++|+.. ...+|+++|+|||
T Consensus 88 n~~~~~~q~~~~~~~~~~~-------~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~---~~~~p~llllDEP 157 (213)
T cd03277 88 NLCQFLPQDRVGEFAKLSP-------IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQ---ELTRCPFRVVDEI 157 (213)
T ss_pred CceEEEchHHHHHHHhCCh-------HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHH---hccCCCEEEEecc
Confidence 22211000 000111 122333332 3445678899999999999888665410 0126999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcC--EEEEEeCCe
Q 018638 261 TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVD--RLIFLYEGK 320 (352)
Q Consensus 261 tsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aD--rv~vL~~G~ 320 (352)
|++||+..+..+++.|.+++++ |. .|+|++||++..+...|| +|++|++|+
T Consensus 158 ~~~LD~~~~~~i~~~l~~~~~~~g~---------~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 158 NQGMDPTNERKVFDMLVETACKEGT---------SQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cccCCHHHHHHHHHHHHHHhhcCCC---------ceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999999999765 42 479999999988888877 788999886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-24 Score=211.75 Aligned_cols=194 Identities=31% Similarity=0.423 Sum_probs=141.0
Q ss_pred eEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE-----------ECCEeCCCCCChhh
Q 018638 96 NVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDEE 163 (352)
Q Consensus 96 nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~-----------i~G~~~~~~~~~~~ 163 (352)
++..+||.. ..|..+- ..++|.++||+||||-||||-+|+|+|.+.|.=|+-. |.|..+..+...-.
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 467888742 2333322 3578999999999999999999999999999866431 11111100000000
Q ss_pred hccceEEEEec----CCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQ----SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q----~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIAr 239 (352)
-...++..=+| -|..+. -+|.|-+.-. ......+++.++++|+..++|.+++|||||.||+|||.
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~K-G~v~elLk~~----------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa 226 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVK-GKVGELLKKV----------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA 226 (591)
T ss_pred cCCcceecchHHHHHHHHHhc-chHHHHHHhh----------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence 00012233333 233333 3666654321 11124678899999999999999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|+++ +++++++|||+|.||...+-...+++++|.+.+ ++||+|.||+..+.-++|-|.++..
T Consensus 227 ~l~r-------dADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~----------k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 227 ALLR-------DADVYFFDEPSSYLDIRQRLNAARVIRELAEDG----------KYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHhc-------cCCEEEEcCCcccccHHHHHHHHHHHHHHhccC----------CeEEEEechHHHHHHhhheeEEEec
Confidence 9997 599999999999999999999999999999875 4999999999999999999999874
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-23 Score=186.14 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=111.3
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
+.+++|++|+. |++++|+||||||||||+|+|+|... +.+.|.++.. -.+++|...+|+.+|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-----------~~~~~q~~~l~~~~~ 75 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-----------SSFELPPVKIFTSIR 75 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-----------CccCcccceEEEecc
Confidence 45788888775 79999999999999999999988553 2235554321 136778667899999
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
+.||+.++... ...+. +++.++++.+++ . +|+++|+||||+|
T Consensus 76 ~~d~l~~~~s~----~~~e~-~~~~~iL~~~~~--------------------------~-------~p~llllDEp~~g 117 (199)
T cd03283 76 VSDDLRDGISY----FYAEL-RRLKEIVEKAKK--------------------------G-------EPVLFLLDEIFKG 117 (199)
T ss_pred chhccccccCh----HHHHH-HHHHHHHHhccC--------------------------C-------CCeEEEEecccCC
Confidence 99999886521 12333 457788888763 3 5999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh--cCEEEEE
Q 018638 264 LDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA--VDRLIFL 316 (352)
Q Consensus 264 LD~~~~~~l~-~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~--aDrv~vL 316 (352)
+|+.....+. .+++++.+.+ .|+|++||+++.+..+ .++|-.+
T Consensus 118 lD~~~~~~l~~~ll~~l~~~~----------~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 118 TNSRERQAASAAVLKFLKNKN----------TIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred CCHHHHHHHHHHHHHHHHHCC----------CEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 9999988775 5788887655 5999999999998776 4555544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-22 Score=220.37 Aligned_cols=206 Identities=28% Similarity=0.418 Sum_probs=170.5
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC---CceEEEECCEeCCCCCChhhhccceEEEEecCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP---DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p---~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~ 180 (352)
..+|+|+|.-+++|+++.++||.|||||||+++++|-++- ..|+|.+||.+...... +..++|+.|+...+|
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~-----~~~~aY~~e~DvH~p 202 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP-----KKTVAYNSEQDVHFP 202 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc-----CceEEeccccccccc
Confidence 4699999999999999999999999999999999998754 25799999998654322 335999999999999
Q ss_pred CCCHHHHHHhhhhhcCC------CCHHHHH-HHHHHHHHHcCCCccccc-----CCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 181 SLTVRENVGFLLYENSK------MRDEQIS-ELVKENLAAVGLKGVEDR-----LPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 181 ~lTV~eni~~~~~~~~~------~~~~~~~-~~v~~~l~~~gL~~~~~~-----~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
.|||+|-+.|.+..... ..+.+.. ...+.+++.+||+.-.|. ..+..|||||+||++|-+++.
T Consensus 203 ~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~----- 277 (1391)
T KOG0065|consen 203 ELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG----- 277 (1391)
T ss_pred eeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeec-----
Confidence 99999999998743221 2222222 245679999999765554 457999999999999999996
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH-HHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl-~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+++++.+||+|.|||..+.-++.+.|+.+.+-.+ .|++++-|+. +++-++.|.|++|.+|+++..|+.
T Consensus 278 --~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~---------~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~ 346 (1391)
T KOG0065|consen 278 --PASILFWDEITRGLDSSTAFQIIKALRQLAHITG---------ATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPR 346 (1391)
T ss_pred --CcceeeeecccccccHHHHHHHHHHHHHHHhhhc---------ceEEEEeccCChHHHHhhhheeeeeccceEEeccH
Confidence 6999999999999999999999999999976532 5777777776 477778899999999999999988
Q ss_pred ccc
Q 018638 328 HEF 330 (352)
Q Consensus 328 ~~~ 330 (352)
++.
T Consensus 347 d~~ 349 (1391)
T KOG0065|consen 347 DEV 349 (1391)
T ss_pred HHH
Confidence 764
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-22 Score=177.67 Aligned_cols=78 Identities=31% Similarity=0.418 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHH
Q 018638 227 LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (352)
Q Consensus 227 LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i 306 (352)
||+|||||++|||+++.. ...+|+++|+|||+++||+..+..+.+.|.++.++| .|+|++||+++.+
T Consensus 95 LS~Ge~~r~~Laral~~~---~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g----------~tiIiiSH~~~~~ 161 (178)
T cd03239 95 LSGGEKSLSALALIFALQ---EIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHT----------SQFIVITLKKEMF 161 (178)
T ss_pred CCHHHHHHHHHHHHHHHh---cCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHH
Confidence 999999999999999620 002699999999999999999999999999987665 5999999999887
Q ss_pred HhhcCEEEEEeC
Q 018638 307 RRAVDRLIFLYE 318 (352)
Q Consensus 307 ~~~aDrv~vL~~ 318 (352)
. .+|+++.+.+
T Consensus 162 ~-~adrvi~i~~ 172 (178)
T cd03239 162 E-NADKLIGVLF 172 (178)
T ss_pred h-hCCeEEEEEE
Confidence 5 6899999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=185.24 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 226 ~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
.|||||+||++||++++.- ...+|+++|+||||++||+..+..+.+.|+++.+ + .|+|++||+++.
T Consensus 170 ~lS~G~~~r~~la~~~~~~---~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~----------~tii~isH~~~~ 235 (276)
T cd03241 170 IASGGELSRLMLALKAILA---RKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-S----------HQVLCITHLPQV 235 (276)
T ss_pred hcChhHHHHHHHHHHHHHh---cCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEechHHH
Confidence 4999999999999976530 0015999999999999999999999999999864 3 499999999986
Q ss_pred HHhhcCEEEEEeCCeE
Q 018638 306 IRRAVDRLIFLYEGKI 321 (352)
Q Consensus 306 i~~~aDrv~vL~~G~i 321 (352)
. .+||++++|.+|..
T Consensus 236 ~-~~~d~~~~l~~~~~ 250 (276)
T cd03241 236 A-AMADNHFLVEKEVE 250 (276)
T ss_pred H-HhcCcEEEEEEecC
Confidence 4 68999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-22 Score=203.93 Aligned_cols=186 Identities=24% Similarity=0.299 Sum_probs=144.0
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|.++||-.--+. ..++..++|+|++|-.+-|+||||||||+|+|+|.||||...|...+- + +.++-
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P--------~-----~~~mF 548 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP--------R-----PNNIF 548 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC--------C-----CcceE
Confidence 888888876654 457799999999999999999999999999999999999866655431 1 12589
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhh----cCCCCHHHHHHHHHHHHHHcCCCcccccCC---------CCCChHHHHHHHH
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYE----NSKMRDEQISELVKENLAAVGLKGVEDRLP---------SELSGGMKKRVAL 237 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~----~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~---------~~LSGGqrQRvaI 237 (352)
|+||.|++- .-|.+|.|.++-.. .++..++ ....+|..+.|+..+.|-. ..||||||||+++
T Consensus 549 YIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~----dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m 623 (728)
T KOG0064|consen 549 YIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQ----DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM 623 (728)
T ss_pred eccCCCccC-cCcccceeecCCcHHHHHhcCCCHH----HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH
Confidence 999999876 56899998776321 1223322 2455677777765555443 5899999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
||.+.+ +|+..+|||-|++..+..+..+.+..++. | .+.|-|||+.....-. ..++-.
T Consensus 624 ARm~yH-------rPkyalLDEcTsAvsidvE~~i~~~ak~~---g----------i~llsithrpslwk~h-~~ll~~ 681 (728)
T KOG0064|consen 624 ARMFYH-------RPKYALLDECTSAVSIDVEGKIFQAAKDA---G----------ISLLSITHRPSLWKYH-THLLEF 681 (728)
T ss_pred HHHHhc-------CcchhhhhhhhcccccchHHHHHHHHHhc---C----------ceEEEeecCccHHHHH-HHHHhc
Confidence 999997 69999999999999999888888776542 3 6899999999887644 444444
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=191.56 Aligned_cols=181 Identities=31% Similarity=0.433 Sum_probs=143.5
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--------CCCceEEEECCEeCCCCCChhhhccceEEEEecC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--------APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--------~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~ 175 (352)
..+|+||||+|++|++++|+|+|||||||||++|+|.. +||+|.|.+--..+ -+++|-.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-------------~a~iPge 462 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-------------SALIPGE 462 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-------------hhccCcc
Confidence 45899999999999999999999999999999999964 68899887632211 1344543
Q ss_pred CC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc--ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 176 AA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG--VEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 176 ~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~--~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
.- -|..-|+.|.+.-- . .+. ..+.++|.++|+.+ +..+.+++||-|||.|+.||+++.. .|
T Consensus 463 ~Ep~f~~~tilehl~s~----t-GD~----~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae-------rp 526 (593)
T COG2401 463 YEPEFGEVTILEHLRSK----T-GDL----NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE-------RP 526 (593)
T ss_pred cccccCchhHHHHHhhc----c-Cch----hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc-------CC
Confidence 21 13355676665321 1 111 12467899999965 5567889999999999999999986 69
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh-cCEEEEEeCCeEE
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLIFLYEGKIV 322 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~-aDrv~vL~~G~iv 322 (352)
.+++.||-.|.||+.+...+..-|.+++++-+ .|++++||+.+.+..+ -|.++.+.=|+..
T Consensus 527 n~~~iDEF~AhLD~~TA~rVArkiselaRe~g---------iTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 527 NVLLIDEFAAHLDELTAVRVARKISELAREAG---------ITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred CcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC---------CeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99999999999999999999999999987632 6999999999999888 6998888766653
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=213.96 Aligned_cols=122 Identities=21% Similarity=0.318 Sum_probs=105.7
Q ss_pred HHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 018638 207 VKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGEN 285 (352)
Q Consensus 207 v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~ 285 (352)
..+.|..+||.. .+.++..+|||||.||+-||.-|... ...+.++||||||.||++...+.++++|++|...|
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~----~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g-- 1752 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLP----PKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLG-- 1752 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcC----CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC--
Confidence 457889999975 57889999999999999999999752 12368999999999999999999999999999887
Q ss_pred CCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe------CCeEEEeecccccccCCcHHHHHHhc
Q 018638 286 GLANPGNIASYVVVTHQHSTIRRAVDRLIFLY------EGKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 286 ~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~------~G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
.|||+|.||++.+.. ||.|+-|- .|+|++.|+|+++....+.++..+++
T Consensus 1753 --------~tvivieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t~~~l~ 1807 (1809)
T PRK00635 1753 --------HSVIYIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLLKTYMC 1807 (1809)
T ss_pred --------CeEEEEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcHHHHhc
Confidence 499999999999987 89999984 57999999999987666667777664
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=181.57 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=114.7
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE-EEecCCCCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFDS 181 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig-~v~Q~~~l~~~ 181 (352)
...+.+|++++++++++++|.||||+|||||+++++-. .-.. ++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~---------------------~~la--~~g~~vpa~~~~~~- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI---------------------VLMA--QIGCFVPCDSADIP- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH---------------------HHHH--HhCCCcCcccEEEe-
Confidence 45689999999999999999999999999999999911 0011 344 5655432222
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH--hccCCCCCCCCcEEEEeC
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI--IFDNTKESVEPEVLLYDE 259 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL--~~~~~~~a~~p~llLLDE 259 (352)
+ +++++.++++.+. ....+|.|++|++.+++++ +. +|+++||||
T Consensus 72 --~----------------------~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~-------~~sLvLLDE 117 (222)
T cd03285 72 --I----------------------VDCILARVGASDS---QLKGVSTFMAEMLETAAILKSAT-------ENSLIIIDE 117 (222)
T ss_pred --c----------------------cceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCC-------CCeEEEEec
Confidence 1 1233455566543 3578999999999999999 54 699999999
Q ss_pred C---CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 260 P---TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 260 P---tsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
| |++||+..... ..++.+.++ + .++|++||+ .++.++||++..+++|++...+.
T Consensus 118 p~~gT~~lD~~~~~~--~il~~l~~~~~----------~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 118 LGRGTSTYDGFGLAW--AIAEYIATQIK----------CFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CcCCCChHHHHHHHH--HHHHHHHhcCC----------CeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9 99999988753 344555443 4 589999996 77788999999999999987663
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-21 Score=169.05 Aligned_cols=143 Identities=29% Similarity=0.375 Sum_probs=103.0
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE-EEecCCCCCCCCCHHH
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFDSLTVRE 186 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig-~v~Q~~~l~~~lTV~e 186 (352)
...++.+.++.++.|+|||||||||+++.+....-...|.+.... +. +.| ++++...-+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~------------~~g~~~~~~~~~~------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV------------KAGCIVAAVSAEL------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc------------cCCCcceeeEEEE-------
Confidence 444555566679999999999999999998877665555444311 10 011 111111001
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCH
Q 018638 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (352)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~ 266 (352)
+ +. ..+||+||+||++||++|.... ..+|+++|+|||++|+|+
T Consensus 72 -i-~~--------------------------------~~~lS~G~~~~~~la~~L~~~~---~~~~~llllDEp~~gld~ 114 (162)
T cd03227 72 -I-FT--------------------------------RLQLSGGEKELSALALILALAS---LKPRPLYILDEIDRGLDP 114 (162)
T ss_pred -e-hh--------------------------------eeeccccHHHHHHHHHHHHhcC---CCCCCEEEEeCCCCCCCH
Confidence 0 00 0019999999999999998520 015899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 267 ~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
..+..+.+.+.++.+++ .++|++||+++.+.. +|+++.|+.
T Consensus 115 ~~~~~l~~~l~~~~~~~----------~~vii~TH~~~~~~~-~d~~~~l~~ 155 (162)
T cd03227 115 RDGQALAEAILEHLVKG----------AQVIVITHLPELAEL-ADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHh-hhhEEEEEE
Confidence 99999999999986655 599999999998865 799999965
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-21 Score=207.08 Aligned_cols=135 Identities=28% Similarity=0.441 Sum_probs=112.3
Q ss_pred CCCCCHHHHHHhhhhhcCCCCH----------HHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 179 FDSLTVRENVGFLLYENSKMRD----------EQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~----------~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+..+||.|.+.|. ... ..+. .++.+++. +|+.+||.++ +++.+.+|||||+|||+||+||+.+
T Consensus 434 ~~~~~v~~~~~~~-~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~--- 507 (943)
T PRK00349 434 VSELSIGEALEFF-ENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSG--- 507 (943)
T ss_pred HhcCcHHHHHHHH-Hhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhC---
Confidence 3468999999883 222 1222 23445553 7889999876 7999999999999999999999863
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeE
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKI 321 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~i 321 (352)
.+|+++||||||+|||+.....+.++|++|+++| .|||+|+||++++. .||+|++| ++|+|
T Consensus 508 --~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G----------~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~i 574 (943)
T PRK00349 508 --LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLG----------NTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEV 574 (943)
T ss_pred --CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEE
Confidence 2249999999999999999999999999998776 59999999999986 59999999 99999
Q ss_pred EEeeccccccc
Q 018638 322 VWQGMTHEFTS 332 (352)
Q Consensus 322 v~~g~~~~~~~ 332 (352)
++.|+++++..
T Consensus 575 v~~g~~~e~~~ 585 (943)
T PRK00349 575 VASGTPEEIMK 585 (943)
T ss_pred eeccCHHHHhc
Confidence 99999888754
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-20 Score=190.28 Aligned_cols=122 Identities=26% Similarity=0.367 Sum_probs=103.9
Q ss_pred HHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCC
Q 018638 208 KENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENG 286 (352)
Q Consensus 208 ~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~ 286 (352)
.+.|..+||.. .+-++..+|||||.|||-||.-|.+. +...-++||||||+||-..-...+++.|.+|..+|
T Consensus 803 LqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~----~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~G--- 875 (935)
T COG0178 803 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKR----STGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKG--- 875 (935)
T ss_pred HHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhc----cCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC---
Confidence 45678899974 56788999999999999999999863 44568999999999999999999999999999987
Q ss_pred CCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeecccccccCCcHHHHHHhcC
Q 018638 287 LANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 287 ~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
-|||+|.|+|+.+.. ||.|+=| ..|+|++.|+|+++......++..|+..
T Consensus 876 -------nTViVIEHNLdVIk~-AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk~ 931 (935)
T COG0178 876 -------NTVIVIEHNLDVIKT-ADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKK 931 (935)
T ss_pred -------CEEEEEecccceEee-cCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHHH
Confidence 499999999999875 7999988 3679999999999875545566666543
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=204.47 Aligned_cols=135 Identities=28% Similarity=0.388 Sum_probs=108.3
Q ss_pred CCCHHHHHHhhhhhcCCCC--------HHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 181 SLTVRENVGFLLYENSKMR--------DEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~--------~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
.|||.|.+.|......... -.++.+++ +.|..+||..+ +++.+.+|||||+|||+||++|+.+ ..
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~-----~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSG-----LT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhC-----CC
Confidence 5788888777532110000 01223332 34778899765 7999999999999999999999963 23
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g 325 (352)
|+++||||||+|||+.....+.++|++|+++| .|||+|+||++++. .||+|++| ++|+|++.|
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G----------~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g 576 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLG----------NTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASG 576 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeecc
Confidence 58999999999999999999999999998876 59999999999986 89999999 999999999
Q ss_pred ccccccc
Q 018638 326 MTHEFTS 332 (352)
Q Consensus 326 ~~~~~~~ 332 (352)
+++++..
T Consensus 577 ~~~el~~ 583 (924)
T TIGR00630 577 TPEEILA 583 (924)
T ss_pred CHHHHhc
Confidence 8888743
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-22 Score=194.30 Aligned_cols=213 Identities=25% Similarity=0.381 Sum_probs=152.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--CCCCceEEEECCEeCCCCCChh-----h
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDE-----E 163 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--~~p~~G~I~i~G~~~~~~~~~~-----~ 163 (352)
-|.++|.+.+-.++..+.+.||.|-.|..+|||||||-||||||+.|+.- --|..=.|.+..+.+....... .
T Consensus 264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 38999999999889999999999999999999999999999999999853 2233344555544432110000 0
Q ss_pred hccceEEEEecCCC----C-CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAA----L-FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~----l-~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaI 237 (352)
...++..++-.... + -...|+.|-+.-.+...+.......+.++..+|.-+|.+ +.-+++...+|||.|.||+|
T Consensus 344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL 423 (807)
T KOG0066|consen 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL 423 (807)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence 00001111111110 0 123566665543332222121222344567788888886 46677778999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||.. +|-+|+|||||++||..+...+-..|..++ .|+++||||..++..+|..|+.|+
T Consensus 424 ARALfl-------EPTLLMLDEPTNHLDLNAVIWLdNYLQgWk-------------KTLLIVSHDQgFLD~VCtdIIHLD 483 (807)
T KOG0066|consen 424 ARALFL-------EPTLLMLDEPTNHLDLNAVIWLDNYLQGWK-------------KTLLIVSHDQGFLDSVCTDIIHLD 483 (807)
T ss_pred HHHHhc-------CceeeeecCCccccccceeeehhhHHhhhh-------------heeEEEecccchHHHHHHHHhhhh
Confidence 999984 799999999999999999988888887765 389999999999999999999999
Q ss_pred CCeEEE
Q 018638 318 EGKIVW 323 (352)
Q Consensus 318 ~G~iv~ 323 (352)
+-++..
T Consensus 484 ~qkLhy 489 (807)
T KOG0066|consen 484 NQKLHY 489 (807)
T ss_pred hhhhhh
Confidence 988743
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-21 Score=172.59 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=102.7
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~-~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
-..++++.+|++++|+||||||||||+++|++.. .+..|.... . . ...+++..|... .++..+
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~---------~---~~~i~~~dqi~~---~~~~~d 83 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A---------E---SASIPLVDRIFT---RIGAED 83 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c---------c---ccccCCcCEEEE---EecCcc
Confidence 3455666689999999999999999999999543 222232110 0 0 112444322211 111111
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCH
Q 018638 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (352)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~ 266 (352)
......+.++.+++| +..+.+++. +|+++|+||||+|+|+
T Consensus 84 --------------------------------~i~~~~s~~~~e~~~-l~~i~~~~~-------~~~llllDEp~~gld~ 123 (202)
T cd03243 84 --------------------------------SISDGRSTFMAELLE-LKEILSLAT-------PRSLVLIDELGRGTST 123 (202)
T ss_pred --------------------------------cccCCceeHHHHHHH-HHHHHHhcc-------CCeEEEEecCCCCCCH
Confidence 122233456777776 444455554 6999999999999999
Q ss_pred HHHHHHHH-HHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 267 IASTVVED-LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 267 ~~~~~l~~-ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
.....+.. +++.+.+.+ .++|++||+.+.+. .++++..++.|++..++...+
T Consensus 124 ~~~~~l~~~ll~~l~~~~----------~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 124 AEGLAIAYAVLEHLLEKG----------CRTLFATHFHELAD-LPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHHHHHHHHhcC----------CeEEEECChHHHHH-HhhcCCCeEEEEEEEEecCCe
Confidence 98887754 566666555 58999999987766 568999999999988876433
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-20 Score=166.94 Aligned_cols=143 Identities=21% Similarity=0.221 Sum_probs=107.1
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE-EEecCCCCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFDS 181 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig-~v~Q~~~l~~~ 181 (352)
...+.+|++|++++|++++|+||||+||||++++++++. + .. ++| +| |..+..
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------~-------------la--~~G~~v---pa~~~~ 68 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------I-------------MA--QIGCFV---PAEYAT 68 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------H-------------HH--HcCCCc---chhhcC
Confidence 456899999999999999999999999999999999984 0 01 222 22 444556
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
++++|+|.. .++..+...+..+++|+|++|+. .+.+++. +|+++|+|||+
T Consensus 69 l~~~d~I~~----------------------~~~~~d~~~~~~S~fs~e~~~~~-~il~~~~-------~~~lvllDE~~ 118 (204)
T cd03282 69 LPIFNRLLS----------------------RLSNDDSMERNLSTFASEMSETA-YILDYAD-------GDSLVLIDELG 118 (204)
T ss_pred ccChhheeE----------------------ecCCccccchhhhHHHHHHHHHH-HHHHhcC-------CCcEEEecccc
Confidence 677777733 12333345567788999999764 4444554 69999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 262 AGLDPIASTVV-EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 262 sgLD~~~~~~l-~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
+|+|+.....+ .++++.+.+.+ .++|++||+.+.+..+++
T Consensus 119 ~gt~~~~~~~l~~~il~~l~~~~----------~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 119 RGTSSADGFAISLAILECLIKKE----------STVFFATHFRDIAAILGN 159 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC----------CEEEEECChHHHHHHhhc
Confidence 99999776555 55677777665 599999999999887653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=169.11 Aligned_cols=84 Identities=23% Similarity=0.155 Sum_probs=65.6
Q ss_pred CCCCChHHHHHHHHHHHHhccC--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcC
Q 018638 224 PSELSGGMKKRVALARSIIFDN--TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301 (352)
Q Consensus 224 ~~~LSGGqrQRvaIArAL~~~~--~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTH 301 (352)
...||+||||+++|||+|+.-. .....+|+++|+||||++||+..+..+.+.|.++. .+++++|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~--------------q~ii~~~ 246 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV--------------QTFVTTT 246 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC--------------CEEEEeC
Confidence 4568999999999999985100 00002699999999999999999999998887642 3567777
Q ss_pred CHHHHHhhc---CEEEEEeCCeE
Q 018638 302 QHSTIRRAV---DRLIFLYEGKI 321 (352)
Q Consensus 302 dl~~i~~~a---Drv~vL~~G~i 321 (352)
+...+..+| ++++.+++|+|
T Consensus 247 ~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 247 DLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred CchhccchhccCccEEEEeCcEE
Confidence 777777777 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.1e-19 Score=172.60 Aligned_cols=184 Identities=27% Similarity=0.379 Sum_probs=142.6
Q ss_pred EEeCC-eeeeEeeeEEEeCCc-----EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEE
Q 018638 99 KSFGE-KHILRGVSFKIRHGE-----AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (352)
Q Consensus 99 ~~y~~-~~~L~~vsl~i~~Ge-----~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v 172 (352)
++|++ +.-+.+..|.|..|+ ++..+|.||.|||||+++++|.++|++|. ++. ...|+|=
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p---------~lnVSyk 407 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIP---------VLNVSYK 407 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccc---------ccceecc
Confidence 34543 456788999999885 68999999999999999999999999761 111 1248888
Q ss_pred ecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
||...--..-||++-+.--.+. ..+. .+.+.+.++-+.+++..++.+.+|||||+||||||.+|=+ .+
T Consensus 408 pqkispK~~~tvR~ll~~kIr~-ay~~----pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGK-------pA 475 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIRD-AYMH----PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGK-------PA 475 (592)
T ss_pred ccccCccccchHHHHHHHHhHh-hhcC----HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCC-------CC
Confidence 8876543345888866432110 0011 2346677888888999999999999999999999999976 58
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
++++.|||.+-||.+.+..--..++++.-+.+ .|-.+|.||+-.+--.+|||++.+.
T Consensus 476 dvYliDEpsAylDSeQRi~AskvikRfilhak---------ktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 476 DVYLIDEPSAYLDSEQRIIASKVIKRFILHAK---------KTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred ceEEecCchhhcChHHHHHHHHHHHHHHHhcc---------chhhhhhhHHHHHHhhcceeEEEec
Confidence 99999999999999999888888888643321 4899999999999889999988753
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-18 Score=160.06 Aligned_cols=159 Identities=21% Similarity=0.229 Sum_probs=108.2
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
...+.+|++|++.+ ++++|+||||||||||+|+++++.-. |+ .|..+. . ...+++++.| +|+.+
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp----~---~~~~i~~~~~---i~~~~ 80 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP----A---SKAEIGVVDR---IFTRI 80 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec----c---ccceecceee---EeccC
Confidence 34588999999887 99999999999999999999875421 11 121111 1 1225788865 56788
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC--
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP-- 260 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP-- 260 (352)
++.||+..+. |.=...+..|++++.. +.+|+++|||||
T Consensus 81 ~~~~~ls~g~-----------------------------------s~f~~e~~~l~~~l~~-----~~~~~llllDEp~~ 120 (216)
T cd03284 81 GASDDLAGGR-----------------------------------STFMVEMVETANILNN-----ATERSLVLLDEIGR 120 (216)
T ss_pred CchhhhccCc-----------------------------------chHHHHHHHHHHHHHh-----CCCCeEEEEecCCC
Confidence 8888886532 1112233334444432 236999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 261 -TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 261 -tsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+++|.... ...++..+.+. + .++|++||+.+ +.+++|++..+++|++...+..+++
T Consensus 121 gt~~lD~~~~--~~~il~~l~~~~~----------~~vi~~TH~~~-l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 121 GTSTYDGLSI--AWAIVEYLHEKIG----------AKTLFATHYHE-LTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CCChHHHHHH--HHHHHHHHHhccC----------CcEEEEeCcHH-HHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 888887552 34455555554 4 58999999975 4567898888888988877766554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-18 Score=164.05 Aligned_cols=144 Identities=26% Similarity=0.347 Sum_probs=103.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK 197 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~ 197 (352)
.-++|+||||||||||+++|+|+++|++|+|.++|+++.......+.. ..++++||+. +++.++|.+|..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~-~~~~~~~q~~-~~~r~~v~~~~~k------- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIA-GCVNGVPQHD-VGIRTDVLDGCPK------- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHH-HHhccccccc-ccccccccccchH-------
Confidence 578999999999999999999999999999999999975432223332 2478888864 4556677666311
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 018638 198 MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277 (352)
Q Consensus 198 ~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~ 277 (352)
. . |+ ..++|++ +|+++|+|||++ ...+..+++
T Consensus 183 ---~------~---------------------~~---~~~i~~~---------~P~villDE~~~------~e~~~~l~~ 214 (270)
T TIGR02858 183 ---A------E---------------------GM---MMLIRSM---------SPDVIVVDEIGR------EEDVEALLE 214 (270)
T ss_pred ---H------H---------------------HH---HHHHHhC---------CCCEEEEeCCCc------HHHHHHHHH
Confidence 0 0 00 3444443 699999999974 344555555
Q ss_pred HHHHcCCCCCCCCCCceEEEEEcCCHHH--H-----------HhhcCEEEEEeCCeEEEeecccccc
Q 018638 278 SVHKKGENGLANPGNIASYVVVTHQHST--I-----------RRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 278 ~l~~~g~~~~~~~~~~~tvIivTHdl~~--i-----------~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
.+. .| .++|++||+.+. + ..++||+++|++|+ ..|+++++.
T Consensus 215 ~~~-~G----------~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 215 ALH-AG----------VSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred HHh-CC----------CEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 554 45 599999997665 4 36689999999887 667666654
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-17 Score=147.86 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=63.2
Q ss_pred cCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCC
Q 018638 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKK-GENGLANPG 291 (352)
Q Consensus 214 ~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l-~~ll~~l~~~-g~~~~~~~~ 291 (352)
+++.+..++..+++|+|++|...+++.. .+|+++|+|||++|+|+.....+ ..+++.+.++ +
T Consensus 49 ~~~~d~~~~~~s~fs~~~~~l~~~l~~~--------~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~-------- 112 (185)
T smart00534 49 IGASDSLAQGLSTFMVEMKETANILKNA--------TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIG-------- 112 (185)
T ss_pred eCCCCchhccccHHHHHHHHHHHHHHhC--------CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC--------
Confidence 3444555677889999998854444432 36999999999999999977776 4666777664 4
Q ss_pred CceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 292 NIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 292 ~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
.++|++||+++ +.+++|+---++++++
T Consensus 113 --~~iii~TH~~~-l~~~~~~~~~v~~~~~ 139 (185)
T smart00534 113 --ALTLFATHYHE-LTKLADEHPGVRNLHM 139 (185)
T ss_pred --CeEEEEecHHH-HHHHhhcCccceEEEE
Confidence 58999999996 5567775333344443
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.5e-16 Score=141.20 Aligned_cols=141 Identities=22% Similarity=0.225 Sum_probs=95.5
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH--cCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCC-CC
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA--GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF-DS 181 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~--Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~-~~ 181 (352)
.+-+|+++.=..+.+++|+||||+|||||||.++ +++ +..|...... ..+++|..|...-+ ..
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------------~~~~~~~d~i~~~l~~~ 82 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------------SATIGLVDKIFTRMSSR 82 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------------CcEEeeeeeeeeeeCCc
Confidence 3455666542223799999999999999999998 444 5667655431 11478877764322 22
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
.++.+++. .+ .-+-||+++|++++. +|.++|+|||+
T Consensus 83 ~si~~~~S------------------------------------~f-~~el~~l~~~l~~~~-------~~slvllDE~~ 118 (213)
T cd03281 83 ESVSSGQS------------------------------------AF-MIDLYQVSKALRLAT-------RRSLVLIDEFG 118 (213)
T ss_pred cChhhccc------------------------------------hH-HHHHHHHHHHHHhCC-------CCcEEEecccc
Confidence 23322220 00 225689999999985 69999999999
Q ss_pred CCCCHHHH-HHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 262 AGLDPIAS-TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 262 sgLD~~~~-~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
+|+|+... ..+..+++++.+.+. +..++|++||+++.+....
T Consensus 119 ~gtd~~~~~~~~~ail~~l~~~~~-------~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 119 KGTDTEDGAGLLIATIEHLLKRGP-------ECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCC-------CCcEEEEEcChHHHHHhhh
Confidence 99999764 444678888876421 0037999999999988763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.9e-15 Score=145.18 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=67.0
Q ss_pred CCCChHHHHHHHHHHHHhccC--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC
Q 018638 225 SELSGGMKKRVALARSIIFDN--TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~--~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
..+|.||+|+++||++|+.-. .....+|+|+|||||+++||+..+..+.+.+.++ + ..++++||+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~----------~qv~it~~~ 338 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---G----------AQVFITTTD 338 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---C----------CEEEEEcCC
Confidence 589999999999999986100 0000269999999999999999999999888754 2 368999999
Q ss_pred HHHHHhhc--CEEEEEeCCeE
Q 018638 303 HSTIRRAV--DRLIFLYEGKI 321 (352)
Q Consensus 303 l~~i~~~a--Drv~vL~~G~i 321 (352)
.+.+...+ ++++.|++|+|
T Consensus 339 ~~~~~~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 339 LEDLADLLENAKIFHVEQGKI 359 (361)
T ss_pred hhhhhhhhccCcEEEEeCCEE
Confidence 88876663 58999999987
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-16 Score=146.64 Aligned_cols=181 Identities=25% Similarity=0.353 Sum_probs=101.4
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHH-cCC--CCCceEEEECCEeCCCCCCh----hhhccceEEEEecCCCCC-
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-GLL--APDKGEVYIRGRKRAGLISD----EEISGLRIGLVFQSAALF- 179 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~-Gl~--~p~~G~I~i~G~~~~~~~~~----~~~~~~~ig~v~Q~~~l~- 179 (352)
+...+.+.+ .++.|+|||||||||++.+|. .|- +..+.+ +.....+... .......|...+++..-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r----~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFR----GSKLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-----SSGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHccccccc----ccccccccccccccccccccccccccccccccc
Confidence 466667665 499999999999999999993 333 111111 1111111100 011111356666554321
Q ss_pred ---C-CCCHHHHHHh-h--hhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 180 ---D-SLTVRENVGF-L--LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 180 ---~-~lTV~eni~~-~--~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
. ...+...+.- . -+...+. ....+.+.+.+..+.+... .||||||.+++||--|+.. ...+.
T Consensus 91 ~~~~~~~~i~r~~~~~~~~~~~in~~--~~~~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~---~~~~~ 159 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRKGRSEYKINGK--KVRLKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQ---RYKPS 159 (220)
T ss_dssp SSSSSEEEEEEEEETTS-EEEEETTE--EE-HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHH---TCS--
T ss_pred cccccccccccccccccccccccccc--ccccccccccccccccccc------ccccccccccccccccccc---ccccc
Confidence 0 0000000000 0 0000001 1112335566666666432 9999999999999877532 23467
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
+++|||||.++||...+..+.++|+++.++ .-+|++||+..+... ||+.+.+
T Consensus 160 p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-----------~Q~ii~Th~~~~~~~-a~~~~~v 211 (220)
T PF02463_consen 160 PFLILDEVDAALDEQNRKRLADLLKELSKQ-----------SQFIITTHNPEMFED-ADKLIGV 211 (220)
T ss_dssp SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-----------SEEEEE-S-HHHHTT--SEEEEE
T ss_pred cccccccccccccccccccccccccccccc-----------ccccccccccccccc-ccccccc
Confidence 999999999999999999999999998654 369999999887665 5886655
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-16 Score=167.34 Aligned_cols=152 Identities=21% Similarity=0.265 Sum_probs=102.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCC-cEEEEEcCCCchHHHHHHHHHcC-CCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHG-EAVGIIGPSGTGKSTILKIIAGL-LAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~G-e~~~IiGpNGsGKSTLlk~l~Gl-~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|.++++..-+-...-.-.+|+++..+ ++++|+||||+|||||||+|+|+ +.+..|-
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------------- 353 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------------- 353 (771)
T ss_pred CEEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------------
Confidence 466666654221110112478888887 99999999999999999999987 3333331
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
+||..... .+.+++++.. .... ++......+++|+||+|++.|++++-
T Consensus 354 --~Vpa~~~~--~~~~~d~i~~------~i~~----------------~~si~~~LStfS~~m~~~~~il~~~~------ 401 (771)
T TIGR01069 354 --PIPANEHS--EIPYFEEIFA------DIGD----------------EQSIEQNLSTFSGHMKNISAILSKTT------ 401 (771)
T ss_pred --CccCCccc--cccchhheee------ecCh----------------HhHHhhhhhHHHHHHHHHHHHHHhcC------
Confidence 33333210 0111222210 0111 11122347789999999999998873
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l-~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
+|.++|+|||++|+|+.....+ ..++..+.+.| .++|++||+.+...
T Consensus 402 --~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g----------~~viitTH~~eL~~ 449 (771)
T TIGR01069 402 --ENSLVLFDELGAGTDPDEGSALAISILEYLLKQN----------AQVLITTHYKELKA 449 (771)
T ss_pred --CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEECChHHHHH
Confidence 5999999999999999999988 57888887766 58999999988644
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-15 Score=125.29 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=63.4
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
..+|++++|++++|++++|+||||||||||++++. +|+|.++|.++.... ... .++.++|++|+ +|+ .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~-~~~-~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIR-EDS-KDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhh-hhh-cCCEEEEechh--cch-hh
Confidence 56899999999999999999999999999999986 899999999876532 211 22346788787 564 59
Q ss_pred HHHHHHhhh
Q 018638 184 VRENVGFLL 192 (352)
Q Consensus 184 V~eni~~~~ 192 (352)
++|||.++.
T Consensus 71 i~~Ni~~~~ 79 (107)
T cd00820 71 LRLNIFLIT 79 (107)
T ss_pred HHhhceeee
Confidence 999998753
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=142.61 Aligned_cols=185 Identities=19% Similarity=0.261 Sum_probs=121.4
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC---C---hhhhccceEEEEecCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI---S---DEEISGLRIGLVFQSA 176 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~---~---~~~~~~~~ig~v~Q~~ 176 (352)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|++-.... . .....++.|.++.+..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45689999 999999999999999999999999999999999999999665432111 0 0111233588887642
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcE-E
Q 018638 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV-L 255 (352)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~l-l 255 (352)
.++.+-+.-+.. .-.+.|.+..-|-+-++ ...+|+ | .|+|+ .+| +
T Consensus 224 -----~~~~~r~~~~~~----------a~~iAEyfr~~g~~Vll--~~Dslt-----r--~A~A~----------rEisl 269 (438)
T PRK07721 224 -----QPALMRIKGAYT----------ATAIAEYFRDQGLNVML--MMDSVT-----R--VAMAQ----------REIGL 269 (438)
T ss_pred -----CCHHHHHHHHHH----------HHHHHHHHHHCCCcEEE--EEeChH-----H--HHHHH----------HHHHH
Confidence 122222211110 01123334333433211 123443 2 33333 111 4
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHH--cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 256 LYDEP--TAGLDPIASTVVEDLIRSVHK--KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 256 LLDEP--tsgLD~~~~~~l~~ll~~l~~--~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
.+.|| |+|+||.....+.+++.++.. +|. ++- ..||++.+||++. .+||++.+|.+|+|+.++...+
T Consensus 270 ~~ge~P~~~G~dp~~~~~l~~ller~~~~~~Gs--IT~---~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 270 AVGEPPTTKGYTPSVFAILPKLLERTGTNASGS--ITA---FYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred hcCCCCccccCCHHHHHHHHHHHHHhcCCCCCC--eee---EEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHH
Confidence 45675 679999999999999999864 230 000 0289999999995 7899999999999999987654
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.7e-15 Score=134.95 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=88.1
Q ss_pred EEEEEcCCCchHHHHH-HHHHcCCCC-----------------CceEEEECCEeCCCCCChhhhc------cceEEEEec
Q 018638 119 AVGIIGPSGTGKSTIL-KIIAGLLAP-----------------DKGEVYIRGRKRAGLISDEEIS------GLRIGLVFQ 174 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLl-k~l~Gl~~p-----------------~~G~I~i~G~~~~~~~~~~~~~------~~~ig~v~Q 174 (352)
.++|+|+||||||||+ +++.|..++ +.|.|.+.+.|........... ...+-+|+.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 90 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFD 90 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEE
Confidence 4899999999999999 689998764 5678888877764321111000 001223332
Q ss_pred CCCCCCCCCHHHHHHhhh----h---------hcCCCC--HHHHHHHHHHHHHHcCCCcccccCCCCCChH--HHHHHHH
Q 018638 175 SAALFDSLTVRENVGFLL----Y---------ENSKMR--DEQISELVKENLAAVGLKGVEDRLPSELSGG--MKKRVAL 237 (352)
Q Consensus 175 ~~~l~~~lTV~eni~~~~----~---------~~~~~~--~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGG--qrQRvaI 237 (352)
-.. . .-.+++.... . .....+ .........+..+..++. +. ..+.+||+ |++++.|
T Consensus 91 ~~~---~-~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 91 VTS---R-ITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ-YY--DISAKSNYNFEKPFLWL 163 (215)
T ss_pred CcC---H-HHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE-EE--EEeCCCCCCHHHHHHHH
Confidence 110 0 0111111000 0 000111 111111122334444432 22 23445555 9999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPT-----AGLDPIASTVVEDLIRSVHK 281 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPt-----sgLD~~~~~~l~~ll~~l~~ 281 (352)
||+++. +|+++++|||| ++||+..++.+.+.++++++
T Consensus 164 a~~l~~-------~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 164 ARRLTN-------DPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHhh-------cccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999997 69999999999 99999999999999999864
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-15 Score=147.27 Aligned_cols=176 Identities=27% Similarity=0.335 Sum_probs=123.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE--CCEeCCCCCChhhhccc-------------eEEEEecCCCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI--RGRKRAGLISDEEISGL-------------RIGLVFQSAALF 179 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i--~G~~~~~~~~~~~~~~~-------------~ig~v~Q~~~l~ 179 (352)
++|++.++||.||-||||-+++++|-++|.-|.--- +++.+.......++... +.-||-|-|...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 579999999999999999999999999998664311 01111000000000000 011111111111
Q ss_pred CCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeC
Q 018638 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259 (352)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDE 259 (352)
. .+|.+.+.- ....+...++++.+.|....+|-..+|||||.||.+||.+.++ +.++.++||
T Consensus 178 k-~~v~~~l~~----------~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq-------~advyMFDE 239 (592)
T KOG0063|consen 178 K-GTVGSLLDR----------KDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQ-------KADVYMFDE 239 (592)
T ss_pred H-HHHHHHHHH----------HhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhh-------hcceeEecC
Confidence 0 122222211 1112234567888889999999999999999999999999997 699999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 260 PtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|.+.||...+..-...|+.|..-. .=||+|.||++...-+.|-+.+|..
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~----------~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPD----------RYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCC----------CeEEEEEeechHHHhhhcceeEEec
Confidence 999999999999999999987653 3699999999999999999999974
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.6e-14 Score=128.81 Aligned_cols=139 Identities=13% Similarity=0.135 Sum_probs=91.0
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc-CCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG-LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G-l~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
..+.+|++|++.+|++++|+||||+||||+++++++ .+.++.|...+.- .. +++|..|- |-.+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~------------~~~~~~~i---~~~~ 81 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA------------TLSIFDSV---LTRM 81 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce------------EEeccceE---EEEe
Confidence 468999999999999999999999999999999999 6778888765532 11 24443332 1111
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
...|++.-+ +|-=+.....+++++-. +.+|.++|+|||.+
T Consensus 82 ~~~d~~~~~-----------------------------------~StF~~e~~~~~~il~~-----~~~~sLvllDE~~~ 121 (222)
T cd03287 82 GASDSIQHG-----------------------------------MSTFMVELSETSHILSN-----CTSRSLVILDELGR 121 (222)
T ss_pred cCccccccc-----------------------------------cchHHHHHHHHHHHHHh-----CCCCeEEEEccCCC
Confidence 122222111 11111111112222211 23699999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHh
Q 018638 263 GLDPIASTVV-EDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRR 308 (352)
Q Consensus 263 gLD~~~~~~l-~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~ 308 (352)
|.|+.....+ ..+++.+.+. + .++|++||+++...-
T Consensus 122 gT~~~d~~~i~~~il~~l~~~~~----------~~~i~~TH~~~l~~~ 159 (222)
T cd03287 122 GTSTHDGIAIAYATLHYLLEEKK----------CLVLFVTHYPSLGEI 159 (222)
T ss_pred CCChhhHHHHHHHHHHHHHhccC----------CeEEEEcccHHHHHH
Confidence 9997776664 5677777765 4 589999999998653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-14 Score=132.29 Aligned_cols=180 Identities=17% Similarity=0.119 Sum_probs=105.8
Q ss_pred eeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce--EEEECCEeCCCCCChhhhccc-eEEEEecCCCCCCCCCHHH
Q 018638 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRKRAGLISDEEISGL-RIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 110 vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G--~I~i~G~~~~~~~~~~~~~~~-~ig~v~Q~~~l~~~lTV~e 186 (352)
.=+.+.+|+.++|+||+|+|||||++.|++......+ .+++....-... ...++.+. .-.+|...... +...
T Consensus 9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~-ev~el~~~I~~~~v~~~~~~----~~~~ 83 (249)
T cd01128 9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPE-EVTDMQRSVKGEVIASTFDE----PPER 83 (249)
T ss_pred eecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCc-cHHHHHHHhccEEEEecCCC----CHHH
Confidence 3368899999999999999999999999998876533 323221100000 11111111 11222222111 1222
Q ss_pred HHHhh-------hhh-cCCCC----HHHHHHHHHHHHHHcCCCcccccCCCCCChHH--------HHHHHHHHHHhccCC
Q 018638 187 NVGFL-------LYE-NSKMR----DEQISELVKENLAAVGLKGVEDRLPSELSGGM--------KKRVALARSIIFDNT 246 (352)
Q Consensus 187 ni~~~-------~~~-~~~~~----~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGq--------rQRvaIArAL~~~~~ 246 (352)
.+... .+. ..+.+ -+++.+ ..+..+.+. -..-..+|||+ +||+++||++.+
T Consensus 84 ~~~~~~~~~~~a~~~~~~G~~vll~iDei~r-~a~a~~ev~-----~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~--- 154 (249)
T cd01128 84 HVQVAEMVLEKAKRLVEHGKDVVILLDSITR-LARAYNTVV-----PPSGKILSGGVDANALHKPKRFFGAARNIEE--- 154 (249)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHH-hhhhhhhcc-----ccCCCCCCCCcChhhhhhhHHHHHHhcCCCC---
Confidence 22111 000 00100 011111 112222222 22234579999 999999999876
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTV-VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~-l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+++|.+| ||+.+|..+... ++ +.++...+ .|.|++||++.....+ |.|.||+.|++.
T Consensus 155 ----~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~----------~~~ivls~~la~~~~~-paI~vl~s~sr~ 212 (249)
T cd01128 155 ----GGSLTII--ATALVDTGSRMDDVI--FEEFKGTG----------NMELVLDRRLAERRIF-PAIDILKSGTRK 212 (249)
T ss_pred ----CCceEEe--eeheecCCCcccchH--HHHHhcCC----------CcEEEEchHHhhCCCC-CeEEEcCCCCcc
Confidence 5999999 999999655443 44 45554333 3899999999998765 999999999984
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.6e-14 Score=154.14 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=79.4
Q ss_pred CCcccccCCCCCChHHHHHHHHHHHHhccC---CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 018638 216 LKGVEDRLPSELSGGMKKRVALARSIIFDN---TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGN 292 (352)
Q Consensus 216 L~~~~~~~~~~LSGGqrQRvaIArAL~~~~---~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~ 292 (352)
+....++.+.+|||||++||+||+||+.-. .....+|++||+||||++||+.+...+++.|.++...|
T Consensus 940 ~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g--------- 1010 (1042)
T TIGR00618 940 AYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGS--------- 1010 (1042)
T ss_pred CCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCC---------
Confidence 344567789999999999999999997300 00012699999999999999999999999999998766
Q ss_pred ceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 293 IASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 293 ~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
.+|+||||++++...++|+|+|++.|
T Consensus 1011 -~~i~iisH~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1011 -KMIGIISHVPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred -CEEEEEeCcHHHHHhhCCEEEEEECC
Confidence 58999999999999999999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.8e-13 Score=139.96 Aligned_cols=124 Identities=28% Similarity=0.425 Sum_probs=106.0
Q ss_pred HHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCC
Q 018638 211 LAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN 289 (352)
Q Consensus 211 l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~ 289 (352)
|-.+||.. -++|...+|||||.||+.||.-+=.. .--=+++||||+.||-+..-.++++.|++|+..|
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~-----LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlG------ 533 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSG-----LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLG------ 533 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhccc-----ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcC------
Confidence 44468865 46889999999999999999998542 2345789999999999999999999999999887
Q ss_pred CCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeecccccccCCcHHHHHHhcCCCCCCC
Q 018638 290 PGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPI 350 (352)
Q Consensus 290 ~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (352)
-|+|+|.||.++++. ||+|+=| +.|+|+++|++++++...+..+.++++|...-++
T Consensus 534 ----NTviVVEHDedti~~-AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~YLsg~~~i~v 595 (935)
T COG0178 534 ----NTVIVVEHDEDTIRA-ADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYLSGKKTIEV 595 (935)
T ss_pred ----CeEEEEecCHHHHhh-cCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHhhcCCcccCC
Confidence 399999999999875 7999987 4689999999999998878889999998776443
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-13 Score=146.11 Aligned_cols=149 Identities=19% Similarity=0.288 Sum_probs=103.4
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE-EEecCCCCCCCCCHHH
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFDSLTVRE 186 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig-~v~Q~~~l~~~lTV~e 186 (352)
+|+++. ..+.++.|.|||++||||+||.++... + .. ++| +||-... ..+++++
T Consensus 319 ndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~--------~-------------ma--q~G~~vpa~~~--~~i~~~~ 372 (782)
T PRK00409 319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA--------L-------------MA--KSGLPIPANEP--SEIPVFK 372 (782)
T ss_pred ceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH--------H-------------HH--HhCCCcccCCC--ccccccc
Confidence 444443 345789999999999999999996331 0 00 122 4444321 1123334
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCH
Q 018638 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (352)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~ 266 (352)
+|.. .+|-.+...+.++++|+||+|++.|++++- +|.++|+|||++|+||
T Consensus 373 ~i~~----------------------~ig~~~si~~~lStfS~~m~~~~~Il~~~~--------~~sLvLlDE~~~GtDp 422 (782)
T PRK00409 373 EIFA----------------------DIGDEQSIEQSLSTFSGHMTNIVRILEKAD--------KNSLVLFDELGAGTDP 422 (782)
T ss_pred eEEE----------------------ecCCccchhhchhHHHHHHHHHHHHHHhCC--------cCcEEEecCCCCCCCH
Confidence 4311 122233445678899999999999999983 5999999999999999
Q ss_pred HHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 267 IASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 267 ~~~~~l~-~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
.....+. .++..+.+.| .++|++||+.+.....+++..++ ++.+..
T Consensus 423 ~eg~ala~aile~l~~~~----------~~vIitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 423 DEGAALAISILEYLRKRG----------AKIIATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred HHHHHHHHHHHHHHHHCC----------CEEEEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 9988885 4677777665 58999999999988887776654 455544
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=143.41 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=70.6
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH
Q 018638 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~ 304 (352)
..|||||+||++||++++..++ .+|++|||||||+|||+.....+.+.|+++.+ + .+||+|||++.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~---~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~----------~~vi~iTH~~~ 504 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSS---AAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-R----------HQVLCVTHLPQ 504 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-C----------CEEEEEEChHH
Confidence 4789999999999999986210 13699999999999999999999999999974 4 59999999998
Q ss_pred HHHhhcCEEEEEeCCe
Q 018638 305 TIRRAVDRLIFLYEGK 320 (352)
Q Consensus 305 ~i~~~aDrv~vL~~G~ 320 (352)
.+. +||++++|++|.
T Consensus 505 ~~~-~ad~~~~l~k~~ 519 (563)
T TIGR00634 505 VAA-HADAHFKVEKEG 519 (563)
T ss_pred HHH-hcCeEEEEEEcc
Confidence 885 799999999875
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=142.43 Aligned_cols=86 Identities=22% Similarity=0.374 Sum_probs=68.9
Q ss_pred CCCCCChHHHHHHHHHHHHhccC---CCCCCCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 018638 223 LPSELSGGMKKRVALARSIIFDN---TKESVEPEVLLYDEPT-AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (352)
Q Consensus 223 ~~~~LSGGqrQRvaIArAL~~~~---~~~a~~p~llLLDEPt-sgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi 298 (352)
.+.+||||||||++||+||+... .....+|+++|||||| ++||+.....+.+.|.++ ++ .|||+
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~----------~~iii 532 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KD----------TNVFV 532 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CC----------CeEEE
Confidence 56899999999999999986100 0000159999999998 789999999999999998 44 48999
Q ss_pred EcCCHHHHHhhcCEEEEEeC-CeE
Q 018638 299 VTHQHSTIRRAVDRLIFLYE-GKI 321 (352)
Q Consensus 299 vTHdl~~i~~~aDrv~vL~~-G~i 321 (352)
|||+.+... .||++++|.+ |+.
T Consensus 533 ish~~~~~~-~~d~~~~l~~~~~~ 555 (562)
T PHA02562 533 ISHKDHDPQ-KFDRHLKMEKVGRF 555 (562)
T ss_pred EECchhchh-hhhcEEEEEEECCe
Confidence 999977664 5799999986 554
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.3e-13 Score=123.05 Aligned_cols=164 Identities=21% Similarity=0.235 Sum_probs=99.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHH-HHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTI-LKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTL-lk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+.++++.+.+++. +++|+++.|+|+|||||||| +++++++.++....+
T Consensus 8 ~~~~~ld~~l~gg---------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~---------------------- 56 (230)
T PRK08533 8 LSRDELHKRLGGG---------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVS---------------------- 56 (230)
T ss_pred EEEeeeehhhCCC---------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEE----------------------
Confidence 6677777777552 79999999999999999999 799999876433323
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+..+ .+..+.+..... . +.+.+ +.... +.-...+-.| .+|+++.++-.+++.+-.. ...
T Consensus 57 yi~~e------~~~~~~~~~~~~-~-g~~~~-------~~~~~-~~l~~~~~~~-~~~~~~~~~~~l~~il~~~---~~~ 116 (230)
T PRK08533 57 YVSTQ------LTTTEFIKQMMS-L-GYDIN-------KKLIS-GKLLYIPVYP-LLSGNSEKRKFLKKLMNTR---RFY 116 (230)
T ss_pred EEeCC------CCHHHHHHHHHH-h-CCchH-------HHhhc-CcEEEEEecc-cccChHHHHHHHHHHHHHH---Hhc
Confidence 33211 133333332211 0 11111 11110 1101112222 3677776666666554320 013
Q ss_pred CCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH--------HHhhcCEEEEEe
Q 018638 251 EPEVLLYDEPTAGL----DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST--------IRRAVDRLIFLY 317 (352)
Q Consensus 251 ~p~llLLDEPtsgL----D~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~--------i~~~aDrv~vL~ 317 (352)
+|+++++||||+++ |+...+.+.++++.++++| .|+ ++||+... +..+||-|+.|+
T Consensus 117 ~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g----------~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 117 EKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLN----------KVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred CCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCC----------CEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 69999999999999 8888889999999998776 344 55666543 244567777776
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.8e-13 Score=136.96 Aligned_cols=80 Identities=26% Similarity=0.391 Sum_probs=69.4
Q ss_pred CCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 226 ~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
.|||||+|||+||++++... ..+|+++|+|||++|||+.+...+.+.|+++.+. .+||+|||++..
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~---~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~-----------~qvi~iTH~~~~ 495 (553)
T PRK10869 430 VASGGELSRIALAIQVITAR---KMETPALIFDEVDVGISGPTAAVVGKLLRQLGES-----------TQVMCVTHLPQV 495 (553)
T ss_pred hCCHHHHHHHHHHHHHHhcc---CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcC-----------CEEEEEecCHHH
Confidence 47999999999999999520 1258999999999999999999999999999643 489999999987
Q ss_pred HHhhcCEEEEEeCCe
Q 018638 306 IRRAVDRLIFLYEGK 320 (352)
Q Consensus 306 i~~~aDrv~vL~~G~ 320 (352)
+ .+||+++++.++.
T Consensus 496 ~-~~ad~~~~v~k~~ 509 (553)
T PRK10869 496 A-GCGHQHFFVSKET 509 (553)
T ss_pred H-HhCCEEEEEeccc
Confidence 6 6899999998864
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=117.28 Aligned_cols=142 Identities=17% Similarity=0.191 Sum_probs=91.2
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-ceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~ 181 (352)
+..+-+|++|++++|++++|.||||+||||+++++++..--. .|- .+. .. ..+++++. .+|..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vp----a~---~~~i~~~~---~i~~~ 79 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVP----AK---SMRLSLVD---RIFTR 79 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccC----cc---ccEecccc---EEEEe
Confidence 456889999999999999999999999999999999864221 121 110 00 01233221 12333
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
+...|++..+.. .+. -|-+++ ++.+-. +.+|.++|+|||+
T Consensus 80 ~~~~d~~~~~~S--------------------------------tF~-~e~~~~--~~il~~-----~~~~sLvLlDE~~ 119 (218)
T cd03286 80 IGARDDIMKGES--------------------------------TFM-VELSET--ANILRH-----ATPDSLVILDELG 119 (218)
T ss_pred cCcccccccCcc--------------------------------hHH-HHHHHH--HHHHHh-----CCCCeEEEEeccc
Confidence 333444432210 000 011222 222211 1369999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 262 AGLDPIASTVVEDL-IRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 262 sgLD~~~~~~l~~l-l~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
+|+|+.....+... ++.|.+. + .++|++||+++.+..++
T Consensus 120 ~Gt~~~dg~~la~ail~~L~~~~~----------~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 120 RGTSTHDGYAIAHAVLEYLVKKVK----------CLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CCCCchHHHHHHHHHHHHHHHhcC----------CcEEEEeccHHHHHHhh
Confidence 99999998888877 7777764 4 58999999999988875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-12 Score=113.99 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=72.9
Q ss_pred HHcCCCcccccCCCCCChHHHH-----HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcC
Q 018638 212 AAVGLKGVEDRLPSELSGGMKK-----RVALARSIIFDNTKESVEPEVLLYDEPTAGLD---PIASTVVEDLIRSVHKKG 283 (352)
Q Consensus 212 ~~~gL~~~~~~~~~~LSGGqrQ-----RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD---~~~~~~l~~ll~~l~~~g 283 (352)
...|.....+..+..+|+|++| +..+.+++.. .+|+++++|||++.+| ...+..+.++++.+++.|
T Consensus 57 ~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~------~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g 130 (187)
T cd01124 57 EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEE------FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFG 130 (187)
T ss_pred HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHH------hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCC
Confidence 3445556678889999999998 3444444432 3799999999999999 888888999999998776
Q ss_pred CCCCCCCCCceEEEEEcCCHHH---------HHhhcCEEEEEe
Q 018638 284 ENGLANPGNIASYVVVTHQHST---------IRRAVDRLIFLY 317 (352)
Q Consensus 284 ~~~~~~~~~~~tvIivTHdl~~---------i~~~aDrv~vL~ 317 (352)
.|+|+++|+... +..+||.|+.|+
T Consensus 131 ----------~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 131 ----------VTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ----------CEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 599999998875 678899999997
|
A related protein is found in archaea. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-13 Score=121.01 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=62.7
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 018638 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP--TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (352)
Q Consensus 222 ~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP--tsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIiv 299 (352)
+....|||+++-++.+++..+. +|+++|+||| +.++|+. +.+.+.++.+.+ .++|++
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~-------~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~----------~~~i~v 132 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALE-------EADVIIIDEIGKMELKSPK----FVKAVEEVLDSE----------KPVIAT 132 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccC-------CCCEEEEECCCcchhhhHH----HHHHHHHHHhCC----------CeEEEE
Confidence 4455799999999999988875 6999999995 4455544 455666655555 489999
Q ss_pred cCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 300 THQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 300 THdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|+. .+...+|+|..+.+|+|....
T Consensus 133 ~h~~-~~~~~~~~i~~~~~~~i~~~~ 157 (174)
T PRK13695 133 LHRR-SVHPFVQEIKSRPGGRVYELT 157 (174)
T ss_pred ECch-hhHHHHHHHhccCCcEEEEEc
Confidence 9994 555678999999999997663
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=115.54 Aligned_cols=68 Identities=26% Similarity=0.396 Sum_probs=53.3
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC
Q 018638 224 PSELSGGMKKRVALARSIIFDNTKESVEP-EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 224 ~~~LSGGqrQRvaIArAL~~~~~~~a~~p-~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
...+|.|+||.+.|+.+|... .+. .++++|||-++|+|..+..+.+.|.++.+.+ .-+|++||.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~-----~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~----------~QviitTHS 298 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSA-----KKNGSILLIDEPENHLHPSWQRKLIELLKELSKKN----------IQVIITTHS 298 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTT-----TTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGS----------SEEEEEES-
T ss_pred eccCCHHHHHHHHHHHHHhCc-----CCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccC----------CEEEEeCcc
Confidence 467799999999999988863 233 8999999999999999999999998876633 479999999
Q ss_pred HHHH
Q 018638 303 HSTI 306 (352)
Q Consensus 303 l~~i 306 (352)
+..+
T Consensus 299 p~il 302 (303)
T PF13304_consen 299 PFIL 302 (303)
T ss_dssp GGG-
T ss_pred chhc
Confidence 8654
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-12 Score=140.81 Aligned_cols=80 Identities=26% Similarity=0.315 Sum_probs=68.1
Q ss_pred ccCCCCCChHHHHHH------HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 018638 221 DRLPSELSGGMKKRV------ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (352)
Q Consensus 221 ~~~~~~LSGGqrQRv------aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~ 294 (352)
++++..|||||+|++ +||++++. +|+++|+||||++||+..+..+.++|..+...+ .
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~-------~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~----------~ 845 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAG-------NIPLLILDEPTPFLDEERRRKLVDIMERYLRKI----------P 845 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcC-------CCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcC----------C
Confidence 457789999999955 55556664 699999999999999999999999999987655 4
Q ss_pred EEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 295 SYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 295 tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
+||+|||+.+. ..+||++++|+.
T Consensus 846 ~iiiith~~~~-~~~~d~~~~l~~ 868 (880)
T PRK03918 846 QVIIVSHDEEL-KDAADYVIRVSL 868 (880)
T ss_pred EEEEEECCHHH-HHhCCeEEEEEe
Confidence 89999999975 568999999983
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-12 Score=113.21 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=69.9
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 018638 219 VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (352)
Q Consensus 219 ~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi 298 (352)
+..+..+..|-||-=---+.+.+- .--++|||||-++|.|.-+.+++..|+++.+.| .-+||
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~rf~--------~~GiYiLDEPEa~LSp~RQlella~l~~la~sG----------aQ~Ii 183 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNRFN--------GQGIYILDEPEAALSPSRQLELLAILRDLADSG----------AQIII 183 (233)
T ss_pred cCCcchhhhccchHHHHHHHHHhc--------cCceEEecCccccCCHHHHHHHHHHHHHHHhcC----------CeEEE
Confidence 445667789999988888888885 478999999999999999999999999999887 47999
Q ss_pred EcCCHHHHHhhcCEEEEEeCCeE
Q 018638 299 VTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 299 vTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+||.+=.+.-=--+|+-++.+-+
T Consensus 184 ATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 184 ATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred EecChhheeCCCcEEEEEecCCc
Confidence 99998665433456777776654
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=133.50 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=73.7
Q ss_pred ccccCCCCCChHHHHHHHHHHHHh--------------ccC-CCCCCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHc
Q 018638 219 VEDRLPSELSGGMKKRVALARSII--------------FDN-TKESVEPEVLLYDEPTAGL-DPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 219 ~~~~~~~~LSGGqrQRvaIArAL~--------------~~~-~~~a~~p~llLLDEPtsgL-D~~~~~~l~~ll~~l~~~ 282 (352)
+.+.....||+|+.|.+.|...+- +.- ..-..+|+++++|||+.+| |+..+..+.+.++.+++.
T Consensus 605 lfd~~~d~l~~~~~~~fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~ 684 (818)
T PRK13830 605 LLDAEEDGLALGAFQTFEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA 684 (818)
T ss_pred ecCCCccccCccceEEEEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc
Confidence 345555678887656554443320 000 0002479999999999999 799999999999999887
Q ss_pred CCCCCCCCCCceEEEEEcCCHHHHH---------hhcCEEEEEeCCeEEEeec
Q 018638 283 GENGLANPGNIASYVVVTHQHSTIR---------RAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 283 g~~~~~~~~~~~tvIivTHdl~~i~---------~~aDrv~vL~~G~iv~~g~ 326 (352)
| .++|++||+++.+. ..|+++++|.+|++...+.
T Consensus 685 ~----------~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 685 N----------CAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred C----------CEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 6 48999999999886 5799999999999877663
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-12 Score=127.83 Aligned_cols=175 Identities=21% Similarity=0.213 Sum_probs=120.8
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.++.+.++..|. +..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|++
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer--------------- 193 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER--------------- 193 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC---------------
Confidence 366777888785 45688885 9999999999999999999999999999999998877766642
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
..+|.|.+...+.. -++.. ..=...++.|.|+|+|++.+.+.+...--+
T Consensus 194 -----------g~ev~e~~~~~l~~-------------------~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~ 243 (432)
T PRK06793 194 -----------GREVKDFIRKELGE-------------------EGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRD 243 (432)
T ss_pred -----------cccHHHHHHHHhhh-------------------cccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 13566655432110 01110 112456789999999999988876100000
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
..++-+|++|+||...|+. +++-.++.+.-..| .+..+.||-.. +++|.-...+|.|....+.
T Consensus 244 ~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G----------~~~~~~s~l~~----L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 244 QGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGG----------KTLLMESYMKK----LLERSGKTQKGSITGIYTV 306 (432)
T ss_pred cCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCC----------eeeeeeccchh----HHHHhccCCCcceEEEEEE
Confidence 1368999999999999985 55555555543333 47777788433 3344445689999887754
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.5e-12 Score=140.11 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=75.7
Q ss_pred cccCCCCCChHHHHHHHHHHHHhccC-CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 018638 220 EDRLPSELSGGMKKRVALARSIIFDN-TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (352)
Q Consensus 220 ~~~~~~~LSGGqrQRvaIArAL~~~~-~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi 298 (352)
.++.+.+|||||+++++||+||+.-. .-...+|++||+||||++||+.+...+++.|..+++.| .||+|
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g----------~~v~i 1012 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASG----------KTIGV 1012 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC----------CEEEE
Confidence 45889999999999999999998300 00002599999999999999999999999999998776 59999
Q ss_pred EcCCHHHHHhhcCEEEEEeC
Q 018638 299 VTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 299 vTHdl~~i~~~aDrv~vL~~ 318 (352)
|||..+...++..+|.|-..
T Consensus 1013 isH~~~l~~~i~~qi~V~k~ 1032 (1047)
T PRK10246 1013 ISHVEAMKERIPVQIKVKKI 1032 (1047)
T ss_pred EecHHHHHHhccceEEEEEC
Confidence 99999999999888888865
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=135.17 Aligned_cols=80 Identities=29% Similarity=0.359 Sum_probs=67.4
Q ss_pred cCCCCCChHHHHHHHH------HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCce
Q 018638 222 RLPSELSGGMKKRVAL------ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIA 294 (352)
Q Consensus 222 ~~~~~LSGGqrQRvaI------ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~ 294 (352)
..+..||||||+|++| ||+|+. +|++++|||||++||+.....+.++|...... +. ..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~-------~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~--------~~ 861 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNN-------DKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSD--------IP 861 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhcc-------CCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC--------CC
Confidence 4688999999999976 488875 69999999999999999999999999865433 21 03
Q ss_pred EEEEEcCCHHHHHhhcCEEEEEe
Q 018638 295 SYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 295 tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
++|+||||++.+ .+||+++.+.
T Consensus 862 ~ii~ish~~~~~-~~~d~ii~~~ 883 (895)
T PRK01156 862 QVIMISHHRELL-SVADVAYEVK 883 (895)
T ss_pred eEEEEECchHHH-HhcCeEEEEE
Confidence 899999999977 5899999997
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=140.60 Aligned_cols=72 Identities=24% Similarity=0.340 Sum_probs=64.2
Q ss_pred cCCCCCChHHHH------HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCCCCCCC
Q 018638 222 RLPSELSGGMKK------RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-----KGENGLANP 290 (352)
Q Consensus 222 ~~~~~LSGGqrQ------RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-----~g~~~~~~~ 290 (352)
..++.||||||| |++|||||+. +|++|+|||||++||+.+...+.+.|..+.. .|
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~-------~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~------- 1260 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCL-------NCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN------- 1260 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhc-------CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccC-------
Confidence 355789999999 9999999996 6999999999999999999999999988742 13
Q ss_pred CCceEEEEEcCCHHHHHhhc
Q 018638 291 GNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 291 ~~~~tvIivTHdl~~i~~~a 310 (352)
.+||+||||++++..+|
T Consensus 1261 ---~~viiitHd~~~~~~~~ 1277 (1311)
T TIGR00606 1261 ---FQLLVITHDEDFVELLG 1277 (1311)
T ss_pred ---CeEEEEecCHHHHHHHh
Confidence 58999999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.3e-12 Score=121.10 Aligned_cols=143 Identities=18% Similarity=0.305 Sum_probs=96.0
Q ss_pred eeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC-CCCCCHHHHH
Q 018638 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL-FDSLTVRENV 188 (352)
Q Consensus 110 vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l-~~~lTV~eni 188 (352)
+++.++.|+.++|+||+|||||||+++|+++++|+.|.|.+... ..+.... ...+.++.+...- ....|..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~--~El~~~~---~~~~~l~~~~~~~~~~~~~~~--- 208 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDT--REIFLPH---PNYVHLFYSKGGQGLAKVTPK--- 208 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCc--cccCCCC---CCEEEEEecCCCCCcCccCHH---
Confidence 56788899999999999999999999999999999998888532 1111000 1123333221100 0001111
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHH
Q 018638 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (352)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~ 268 (352)
-.++.+|- ++|+++++|||.+
T Consensus 209 ----------------------------------------------~~l~~~Lr-------~~pd~ii~gE~r~------ 229 (308)
T TIGR02788 209 ----------------------------------------------DLLQSCLR-------MRPDRIILGELRG------ 229 (308)
T ss_pred ----------------------------------------------HHHHHHhc-------CCCCeEEEeccCC------
Confidence 12333454 3699999999996
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 269 ~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
.+++++++.+. .|. .+++.++|..+.. ...||++.|..|++...|.+.+..
T Consensus 230 -~e~~~~l~a~~-~g~---------~~~i~T~Ha~~~~-~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 230 -DEAFDFIRAVN-TGH---------PGSITTLHAGSPE-EAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred -HHHHHHHHHHh-cCC---------CeEEEEEeCCCHH-HHHHHHHHHhhccccccCCCHHHH
Confidence 34566777665 342 3679999999954 457999999999998888777654
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-12 Score=130.75 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=55.8
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce-EEEECCEeCCCCCChhhhccceEEEEecCC
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G-~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~ 176 (352)
.+|++|||+|++||+++|+|||||||||||+ +|+..|++| +|.++|+++... ........+ +|||+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~-~~~ai~~LR--~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSP-NKNAMETLD--EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCC-CHHHHHHHH--HHHHhh
Confidence 5899999999999999999999999999999 788899988 799999998653 233333223 888865
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.8e-12 Score=138.84 Aligned_cols=84 Identities=26% Similarity=0.312 Sum_probs=69.5
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 018638 219 VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (352)
Q Consensus 219 ~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi 298 (352)
..+..+..||||||||++||++|+.- ...+|+++||||||++||+.....+.++|.++.+. .+|||
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~---~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-----------~~~i~ 1147 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIF---KVKPAPFCILDEVDAPLDDANVERFANLLKEFSKN-----------TQFIV 1147 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHH---ccCCCCeEEecCccccccHHHHHHHHHHHHHhccC-----------CEEEE
Confidence 34567899999999999999998410 00257999999999999999999999999998654 38999
Q ss_pred EcCCHHHHHhhcCEEEEEe
Q 018638 299 VTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 299 vTHdl~~i~~~aDrv~vL~ 317 (352)
|||+++.+ .+||+++.+.
T Consensus 1148 ~sh~~~~~-~~~d~~~~~~ 1165 (1179)
T TIGR02168 1148 ITHNKGTM-EVADQLYGVT 1165 (1179)
T ss_pred EEcChhHH-HHhhhHeeee
Confidence 99999986 5699987654
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=103.81 Aligned_cols=131 Identities=16% Similarity=0.113 Sum_probs=77.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (352)
++.|.||||+|||||++.+++...+..|.|.+... +.... ...++... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~---------------------e~~~~---~~~~~~~~-------~ 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI---------------------EEEIE---ELTERLIG-------E 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC---------------------CcchH---HHHHHHhh-------h
Confidence 47899999999999999999988775555554332 21100 01111100 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC----------CCCHHH
Q 018638 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA----------GLDPIA 268 (352)
Q Consensus 199 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts----------gLD~~~ 268 (352)
.. ... .+...+........+.++.++++.+++... +|+++++||+++ +.|...
T Consensus 50 ~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lviDe~~~~~~~~~~~~~~~~~~~ 112 (165)
T cd01120 50 SL-------KGA---LDNLIIVFATADDPAAARLLSKAERLRERG-------GDDLIILDELTRLVRALREIREGYPGEL 112 (165)
T ss_pred hh-------ccc---cccEEEEEcCCCCCcHHHHHHHHHHHHhCC-------CCEEEEEEcHHHHHHHHHHHHhcCChHH
Confidence 00 000 001112222333445555667777777764 699999999995 445555
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 269 ~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
...+.+++..+.+.+ .|+|+++|......
T Consensus 113 ~~~l~~l~~~~~~~~----------~~vv~~~~~~~~~~ 141 (165)
T cd01120 113 DEELRELLERARKGG----------VTVIFTLQVPSGDK 141 (165)
T ss_pred HHHHHHHHHHHhcCC----------ceEEEEEecCCccc
Confidence 566666665554444 69999999876543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.8e-11 Score=132.25 Aligned_cols=83 Identities=25% Similarity=0.257 Sum_probs=69.5
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 018638 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (352)
Q Consensus 221 ~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivT 300 (352)
.+.+..||||||++++||++|+.. ...+|+++|||||+++||+..+..+.++|.++... ..+|+||
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~---~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-----------~~~i~~t 1134 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQ---RYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-----------AQFIVVS 1134 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHH---hcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-----------CeEEEEE
Confidence 345679999999999999999731 01257999999999999999999999999998654 3799999
Q ss_pred CCHHHHHhhcCEEEEEeC
Q 018638 301 HQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 301 Hdl~~i~~~aDrv~vL~~ 318 (352)
|+...+ .+||+++.+..
T Consensus 1135 ~~~~~~-~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1135 LRSPMI-EYADRAIGVTM 1151 (1164)
T ss_pred CcHHHH-HhcceeEeEEE
Confidence 998765 78999988764
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-10 Score=125.95 Aligned_cols=85 Identities=32% Similarity=0.433 Sum_probs=68.8
Q ss_pred CCCCCChHHHH------HHHHHHHHhccCCCCCCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE
Q 018638 223 LPSELSGGMKK------RVALARSIIFDNTKESVEP-EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295 (352)
Q Consensus 223 ~~~~LSGGqrQ------RvaIArAL~~~~~~~a~~p-~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~t 295 (352)
.+..||||||| |++||++++.... ...| +++|+||||++||+.....+.++|..+...|. .+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~--~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~---------~q 846 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIE--GDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGV---------EQ 846 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhccc--CCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCC---------Ce
Confidence 46799999999 9999999874100 0012 67999999999999999999999999876541 37
Q ss_pred EEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 296 YVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 296 vIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+||||.+.+. .||++++|.+.
T Consensus 847 viiish~~~~~~-~ad~~~~~~~~ 869 (880)
T PRK02224 847 IVVVSHDDELVG-AADDLVRVEKD 869 (880)
T ss_pred EEEEECChHHHH-hcCeeEEeecC
Confidence 999999999985 68999999654
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=100.70 Aligned_cols=79 Identities=16% Similarity=0.071 Sum_probs=58.1
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC---CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcC
Q 018638 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG---LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg---LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTH 301 (352)
...|.++++.+..++.++.. .+|+++++||||+. .|......+++.++.+++++ .|+++++|
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~-----~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g----------~tvllt~~ 163 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKS-----KREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLG----------KTILITLH 163 (234)
T ss_pred ccCcchHHHHHHHHHHHHHh-----cCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCC----------CEEEEEec
Confidence 34567889999999999862 47999999999964 44555555555566666665 58999999
Q ss_pred CHHH-------HHhhcCEEEEEeC
Q 018638 302 QHST-------IRRAVDRLIFLYE 318 (352)
Q Consensus 302 dl~~-------i~~~aDrv~vL~~ 318 (352)
+... +..++|-++.|+.
T Consensus 164 ~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 164 PYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CCcCCHHHHHHHHhheEEEEEEEe
Confidence 7654 5667787777763
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-10 Score=114.43 Aligned_cols=144 Identities=15% Similarity=0.254 Sum_probs=91.7
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~ 185 (352)
++++.++.+++|+++++|||||+||||++..|++.+.+..|. .+|++|.+|+ | ..++.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-------------------~kV~LI~~Dt--~-RigA~ 302 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-------------------SKVALLTTDS--Y-RIGGH 302 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-------------------CeEEEEeCCc--c-chhHH
Confidence 566777888899999999999999999999999877655442 1488999887 3 36899
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHH-HHHHHHHHhccCCCCCCCC--cEEEEeCCCC
Q 018638 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKK-RVALARSIIFDNTKESVEP--EVLLYDEPTA 262 (352)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQ-RvaIArAL~~~~~~~a~~p--~llLLDEPts 262 (352)
|++.+....+. .+.....+..+......++.+.....+.+...+++- .+.-+.+++.+. ..| .+|+||.++.
T Consensus 303 EQLr~~AeilG-Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~----~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 303 EQLRIYGKILG-VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGA----GAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHHHHhC-CCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhcc----CCCCeeEEEEeCCCc
Confidence 99988654332 222111222334455567766656667775444432 223444444320 012 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHc
Q 018638 263 GLDPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 263 gLD~~~~~~l~~ll~~l~~~ 282 (352)
+ ..+.+.++.+...
T Consensus 378 ~------~~l~~i~~~f~~~ 391 (484)
T PRK06995 378 G------DTLNEVVQAYRGP 391 (484)
T ss_pred H------HHHHHHHHHhccC
Confidence 7 3344445554433
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-11 Score=125.41 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=105.2
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHH--HcCCCCCceEEEECCEeCCCCCChhhhc--cceEEEEecCCCCCCCCCHHHHH
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKII--AGLLAPDKGEVYIRGRKRAGLISDEEIS--GLRIGLVFQSAALFDSLTVRENV 188 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l--~Gl~~p~~G~I~i~G~~~~~~~~~~~~~--~~~ig~v~Q~~~l~~~lTV~eni 188 (352)
=+++|..+.|.|++|||||||..-+ .|+.++.+.-+++..+. ...... ...+||-+++..-- +++
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE-----~~~~l~~~~~~~G~~~~~~~~~------g~l 85 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE-----SPQDIIKNARSFGWDLQKLVDE------GKL 85 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-----CHHHHHHHHHHcCCCHHHHhhc------Cce
Confidence 4789999999999999999999866 57666566667776543 122221 11356555432100 011
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHH--HHHhccCCCCCCCCcEEEEeCCCCCCCH
Q 018638 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA--RSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (352)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIA--rAL~~~~~~~a~~p~llLLDEPtsgLD~ 266 (352)
.+ .. ..... ....+++.+++++..++.+.++|+|++|||.|+ .+|.. .|+.+ .
T Consensus 86 ~~-~~----~~~~~---~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~-------~~~~~----------~ 140 (484)
T TIGR02655 86 FI-LD----ASPDP---EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQ-------QYDAV----------S 140 (484)
T ss_pred EE-Ee----cCchh---ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhh-------hcCch----------H
Confidence 11 00 00000 011245566777788888999999999999999 55543 23333 5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH---------HHhhcCEEEEEe
Q 018638 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST---------IRRAVDRLIFLY 317 (352)
Q Consensus 267 ~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~---------i~~~aDrv~vL~ 317 (352)
..++.+.++++.+++.| +|+|+++|+.+. ...+||.|+.|+
T Consensus 141 ~~r~~l~~Li~~L~~~g----------~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 141 VVRREIFRLVARLKQIG----------VTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHHHHCC----------CEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 67888999999998776 699999999764 266889999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.6e-10 Score=99.21 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=61.2
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCC--CCCCCCCH
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA--ALFDSLTV 184 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~--~l~~~lTV 184 (352)
.+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-... . .+..+++++|.. ..++..++
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~---~~~~~~~~~~~~~~~~~~~~~~ 89 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--P---HPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--C---CCCEEEEEEecCCCCCCCccCH
Confidence 3445677899999999999999999999999999999999999977432211 1 122466766654 34566788
Q ss_pred HHHHHhhhh
Q 018638 185 RENVGFLLY 193 (352)
Q Consensus 185 ~eni~~~~~ 193 (352)
.+.+...+.
T Consensus 90 ~~~l~~~lR 98 (186)
T cd01130 90 ADLLRSALR 98 (186)
T ss_pred HHHHHHHhc
Confidence 888877553
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-09 Score=110.49 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=68.3
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC---EeCCCCCChh--h
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG---RKRAGLISDE--E 163 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G---~~~~~~~~~~--~ 163 (352)
..++.+++++.|. +..+++.++ .|.+|++++|+||||||||||+++|+++.+|+.|.|.+.| +++....... .
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~ 216 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLAD 216 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHH
Confidence 3589999999995 567999996 9999999999999999999999999999999999998865 4443221111 1
Q ss_pred hccceEEEEecCC
Q 018638 164 ISGLRIGLVFQSA 176 (352)
Q Consensus 164 ~~~~~ig~v~Q~~ 176 (352)
..++.|+||+|..
T Consensus 217 ~r~rtI~vV~qsd 229 (450)
T PRK06002 217 NLKKAVAVVATSD 229 (450)
T ss_pred hhCCeEEEEEcCC
Confidence 1234699999964
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-09 Score=106.05 Aligned_cols=189 Identities=18% Similarity=0.204 Sum_probs=115.4
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-h-hc---cceEEEEecCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-E-IS---GLRIGLVFQSAA 177 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~-~~---~~~ig~v~Q~~~ 177 (352)
+..+++++ |.|.+|+.++|+|+||+|||||+++|+|+.+|+.|.+.+.|++-....... . .. ..+..+|.....
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 46789999 999999999999999999999999999999999998877666432111000 0 00 012223332211
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEE
Q 018638 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257 (352)
Q Consensus 178 l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLL 257 (352)
.++.+-..-+.. --.+.|.+...|-+-++ ...+|+- .|+|+=. ==+.+
T Consensus 229 ----~~p~~r~~~~~~----------a~t~AE~frd~G~~Vll--~~DslTr-------~A~A~RE---------isl~~ 276 (440)
T TIGR01026 229 ----QSPLLRLKGAYV----------ATAIAEYFRDQGKDVLL--LMDSVTR-------FAMAQRE---------IGLAA 276 (440)
T ss_pred ----CCHHHHHHHHHH----------HHHHHHHHHHCCCCEEE--EEeChHH-------HHHHHHH---------HHHhc
Confidence 122222211110 00122333333433211 2344442 4444410 01566
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 258 DEP--TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 258 DEP--tsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
.|| +.|+||.....+.+++.+....++-.++-. -||++.+||+. ..++|++..+.+|+|+.+....+
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i---~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGASGKGSITAF---YTVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccCCCCeeeEE---EEEEccCcCCC--cchhhhhccccceEEEEecchhh
Confidence 786 449999999999999999865431111111 16788899984 56889999999999999886655
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.2e-08 Score=79.24 Aligned_cols=100 Identities=30% Similarity=0.433 Sum_probs=69.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCc-eEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhh
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDK-GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE 194 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~-G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~ 194 (352)
.+..+.|+||+|+||||+++.|+..+.... +-++++....... +..+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE------------------------VLDQLL------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcccc------------------------CHHHHH------
Confidence 367899999999999999999999987665 4555555432110 000000
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 018638 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274 (352)
Q Consensus 195 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ 274 (352)
............+++..+..++++--. +|.++++||+..-.+.........
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~viiiDei~~~~~~~~~~~~~~ 101 (148)
T smart00382 51 ----------------------LIIVGGKKASGSGELRLRLALALARKL-------KPDVLILDEITSLLDAEQEALLLL 101 (148)
T ss_pred ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhc-------CCCEEEEECCcccCCHHHHHHHHh
Confidence 111222344677888888888888764 479999999999999988776654
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-09 Score=109.66 Aligned_cols=89 Identities=21% Similarity=0.283 Sum_probs=67.0
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE---ECCEeCCCCCCh----hhhccceEEEEecC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY---IRGRKRAGLISD----EEISGLRIGLVFQS 175 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~---i~G~~~~~~~~~----~~~~~~~ig~v~Q~ 175 (352)
+..+++++ |+|.+|++++|+|+||+|||||+++|+|+.+|+.+.+- .+|+++...... ....+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 99999999999999999999999999999999864333 333333211101 11122359999999
Q ss_pred CCCCCCCCHHHHHHhhh
Q 018638 176 AALFDSLTVRENVGFLL 192 (352)
Q Consensus 176 ~~l~~~lTV~eni~~~~ 192 (352)
...+..+++.+++.+..
T Consensus 221 ~s~~~rl~a~e~a~~iA 237 (434)
T PRK07196 221 ESPLMRIKATELCHAIA 237 (434)
T ss_pred CChhhhHHHHHHHHHHH
Confidence 98888899999986644
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-09 Score=109.19 Aligned_cols=175 Identities=21% Similarity=0.289 Sum_probs=109.2
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECC---EeCCCCCChhhh-ccceEEEE-----e
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRG---RKRAGLISDEEI-SGLRIGLV-----F 173 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G---~~~~~~~~~~~~-~~~~ig~v-----~ 173 (352)
..+++++ |++.+|+.++|+|+||+|||||+++|+|+.++ +.|.|.+.| +++......... ...+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5689998 99999999999999999999999999999854 557777745 443222111111 12245666 9
Q ss_pred cCCC--CCCCCCHHHHHHhhhhhcCC--CCHHHHHHHHHHHHHHcCCC-----cccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 174 QSAA--LFDSLTVRENVGFLLYENSK--MRDEQISELVKENLAAVGLK-----GVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 174 Q~~~--l~~~lTV~eni~~~~~~~~~--~~~~~~~~~v~~~l~~~gL~-----~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
|+|. +.+.+ +...++..+..+.. ....+...++.++++.++|. .....+|+.||. +++-+=+
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~-------l~~llER- 301 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST-------LPKLLER- 301 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH-------hHHHHHH-
Confidence 9873 44444 55555554432221 12244567788999999993 467788888882 5554421
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
|. +. .+|. ++-. -||++..+|++.. ++|.+.-+-||.|+-+
T Consensus 302 ----ag-~~---------------------------~~GS--ITai---~tVl~~gdD~~dp--i~d~~~~i~dg~ivLs 342 (442)
T PRK06315 302 ----SG-AS---------------------------DKGT--ITAF---YTVLVAGDDMNEP--VADEVKSILDGHIVLS 342 (442)
T ss_pred ----hc-CC---------------------------CCcc--eeee---EEEEecCCCCCcc--cHHHhhhhcceEEEEe
Confidence 11 10 0110 1100 2667777777653 5677777788888776
Q ss_pred ecc
Q 018638 325 GMT 327 (352)
Q Consensus 325 g~~ 327 (352)
-..
T Consensus 343 r~l 345 (442)
T PRK06315 343 NAL 345 (442)
T ss_pred ccH
Confidence 533
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-08 Score=108.86 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=47.9
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHh
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGL-DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgL-D~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~ 308 (352)
|++++. .+|+++++|||+.+| |+..+..+.+.++.+++.| .+++++||+++.+..
T Consensus 680 i~~~l~-------~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g----------~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALK-------GQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKAN----------CLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhc-------CCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHhh
Confidence 456654 379999999999999 7999999999999998876 489999999999875
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-09 Score=94.77 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=27.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRG 152 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G 152 (352)
++.|+||+||||||+++.|++.+.+ ..|.|....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 6899999999999999999888764 356666544
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.2e-10 Score=102.74 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=31.5
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHH-cCCCCCceEEEECCE
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIA-GLLAPDKGEVYIRGR 153 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~-Gl~~p~~G~I~i~G~ 153 (352)
=+++|+++.|.||+|||||||...++ ....+..+-+++..+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 47899999999999999999988654 223455566777654
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.7e-09 Score=95.79 Aligned_cols=136 Identities=24% Similarity=0.332 Sum_probs=80.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC-EeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhc
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG-RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN 195 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G-~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~ 195 (352)
|.+..|+||.|+|||||+-.++=- ..+|.=++++ .... ...++-|+.=+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~--va~G~~~~g~~~~~~--------~~~~Vlyi~~E-------------------- 50 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALA--MALGKNLFGGGLKVT--------EPGRVVYLSAE-------------------- 50 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHH--HhcCccccCCccccC--------CCceEEEEECC--------------------
Confidence 678899999999999998887632 1223211111 1000 01123343311
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHH----------------HHhccCCCCCCCCcEEEEeC
Q 018638 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR----------------SIIFDNTKESVEPEVLLYDE 259 (352)
Q Consensus 196 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIAr----------------AL~~~~~~~a~~p~llLLDE 259 (352)
.+..++.+++..+...+++.+..++.... +|+.|++.+++ +.. .+|+++|+|
T Consensus 51 --d~~~~i~~Rl~~i~~~~~~~~~~~rl~~~--~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~-------~~~~lvviD- 118 (239)
T cd01125 51 --DPREEIHRRLEAILQHLEPDDAGDRLFID--SGRIQPISIAREGRIIVVPEFERIIEQLLI-------RRIDLVVID- 118 (239)
T ss_pred --CCHHHHHHHHHHHHhhcCCcCcccceEEe--ccCCCceecccCCcccccHHHHHHHHHHHh-------cCCCEEEEC-
Confidence 11222333444455555444333333222 45556555443 222 379999999
Q ss_pred CCCC------CCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHH
Q 018638 260 PTAG------LDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 260 Ptsg------LD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~ 304 (352)
|+++ +|+.....+++.|.+++++ | ++||+++|...
T Consensus 119 pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g----------~avl~v~H~~K 160 (239)
T cd01125 119 PLVSFHGVSENDNGAMDAVIKALRRIAAQTG----------AAILLVHHVRK 160 (239)
T ss_pred ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhC----------CEEEEEeccCc
Confidence 7764 7999999999999998765 4 69999999864
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-09 Score=96.36 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=68.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (352)
++||+||||||||||.++|++++ ..|.+.+.+.| .... .++..+........+. .
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D---------------------~~~~-~~~~~~~~~~~~~~~~-~ 55 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD---------------------SYYK-DLSHEELEERKNNNYD-H 55 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec---------------------cccc-ccccccHHHhccCCCC-C
Confidence 58999999999999999999998 33444443333 1111 1111111111000000 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHH
Q 018638 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (352)
Q Consensus 199 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~ 267 (352)
......+...+.+..+...+..+.+..++|.|++++..+ .+. +++++|+|+|+.+.++.
T Consensus 56 ~~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~-------~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 56 PDAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVY-------PADVIILEGILALYDKE 114 (198)
T ss_pred CCcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecC-------CCCEEEEechhhccchh
Confidence 000011223455666666666777888999999887655 343 58999999999999873
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.8e-08 Score=105.04 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=43.6
Q ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHh
Q 018638 250 VEPEVLLYDEPTAGLD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD-~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~ 308 (352)
.+|.++++|||...|| +.....+.+.++.+++.| ..++++||+++.+..
T Consensus 641 g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~----------~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 641 GTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLN----------TFVIFATQSVEDASK 690 (800)
T ss_pred CCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHh
Confidence 4799999999999999 889999999999998776 489999999987654
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-08 Score=101.05 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=56.4
Q ss_pred CCCChHHHHHHHHHHHHhccC--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC
Q 018638 225 SELSGGMKKRVALARSIIFDN--TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~--~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
..+|.||||+++||.+|+.-. .+...+|+|||||||+++||+..+..+++.|.+. | ..|+++||+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~----------~qv~it~~~ 340 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---G----------VQVFVTAIS 340 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---C----------CEEEEEecC
Confidence 489999999999999998500 0000149999999999999999999999998754 3 479999999
Q ss_pred HHHHH
Q 018638 303 HSTIR 307 (352)
Q Consensus 303 l~~i~ 307 (352)
++.+.
T Consensus 341 ~~~~~ 345 (365)
T TIGR00611 341 LDHLK 345 (365)
T ss_pred hhhcc
Confidence 87654
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.8e-09 Score=93.93 Aligned_cols=70 Identities=26% Similarity=0.377 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
+||+++|+|+||||||||+++|+|++.+ +.++|.++.. .....+...|+.+|+...++..++..|+.+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~---~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP---AKNIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC---HhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 5999999999999999999999999987 5889887642 11112223577777765556667777776643
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-08 Score=109.86 Aligned_cols=86 Identities=21% Similarity=0.291 Sum_probs=70.3
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCCCCCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 018638 222 RLPSELSGGMKKRVALARSIIFDNTKESVE--PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (352)
Q Consensus 222 ~~~~~LSGGqrQRvaIArAL~~~~~~~a~~--p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIiv 299 (352)
+.+.+|||||+=.++||.+|+-.... +.+ -++++|||||..||+.....+.+.|..+...+ .+|+||
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~-~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~----------~qiiII 879 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLL-QGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDG----------RQIIII 879 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHH-hcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcC----------CeEEEE
Confidence 67899999999999888887542111 123 58999999999999999999999999998876 489999
Q ss_pred cCCHHHHHhhcCEEEEEeCC
Q 018638 300 THQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 300 THdl~~i~~~aDrv~vL~~G 319 (352)
||+-++.. .+|.++.++..
T Consensus 880 SH~eel~e-~~~~~i~V~k~ 898 (908)
T COG0419 880 SHVEELKE-RADVRIRVKKD 898 (908)
T ss_pred eChHHHHH-hCCeEEEEEec
Confidence 99988765 46888887653
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.3e-08 Score=97.68 Aligned_cols=84 Identities=25% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCCChHHHHHHHHHHHHhccC--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC
Q 018638 225 SELSGGMKKRVALARSIIFDN--TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~--~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
.-+|+|||++++||+.|+.-. .+...+|+++|||||+++||+..+..+.+.|.... + ++|..|+.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~-q------------~~it~t~~ 328 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP-Q------------AIVAGTEA 328 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC-c------------EEEEcCCC
Confidence 478999999999999997100 00002699999999999999999999988886432 1 45555543
Q ss_pred HHHHHhhcCEEEEEeCCeEEEee
Q 018638 303 HSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 303 l~~i~~~aDrv~vL~~G~iv~~g 325 (352)
...+|+++.+.+|++.-+.
T Consensus 329 ----~~~~~~~~~~~~~~~~~~~ 347 (349)
T PRK14079 329 ----PPGAALTLRIEAGVFTPEA 347 (349)
T ss_pred ----CCCCceEEEEeccEecCCC
Confidence 3468999999999875443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.2e-08 Score=108.19 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=36.5
Q ss_pred eeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCceEEEECC
Q 018638 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRG 152 (352)
Q Consensus 110 vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~-~p~~G~I~i~G 152 (352)
+++...++++++|+|++|+|||||++.+++.+ ....|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 56778899999999999999999999996554 45689998875
|
syringae 6; Provisional |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-07 Score=102.12 Aligned_cols=140 Identities=22% Similarity=0.305 Sum_probs=88.6
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~-~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
..+-+|++|. ..+.++.|.|||.+||||+||.++-.. -..-| .|||-... .+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G-----------------------~~VPa~~a---~i 647 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG-----------------------SFVPAESA---RI 647 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC-----------------------Cceeccce---Ee
Confidence 3466888888 778899999999999999999987542 11112 12222110 01
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC--
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP-- 260 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP-- 260 (352)
++.+.| | .++|- .+.....+|-=+.....++++|-. |.++.++|+|||
T Consensus 648 ~~~d~I-~---------------------triga---~d~i~~g~STF~~E~~~~~~il~~-----at~~sLvllDE~Gr 697 (854)
T PRK05399 648 GIVDRI-F---------------------TRIGA---SDDLASGRSTFMVEMTETANILNN-----ATERSLVLLDEIGR 697 (854)
T ss_pred cccCee-e---------------------eccCc---ccccccCcccHHHHHHHHHHHHHh-----CCCCcEEEEecCCC
Confidence 111222 1 01111 122334567777777788887764 457999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 261 -TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 261 -tsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
|+.+|..+ ..+.++..+.+.++ .++|++||+.+ +..++++
T Consensus 698 GTs~~dg~a--ia~aile~l~~~~~---------~~~l~aTH~~e-l~~l~~~ 738 (854)
T PRK05399 698 GTSTYDGLS--IAWAVAEYLHDKIG---------AKTLFATHYHE-LTELEEK 738 (854)
T ss_pred CCCcchhHH--HHHHHHHHHHhcCC---------ceEEEEechHH-HHHHhhh
Confidence 99999443 45677777776531 58999999955 4456665
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.61 E-value=6e-08 Score=110.53 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=54.5
Q ss_pred cccCCCCCChHHHHHHH----HHHHHhccC-CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 018638 220 EDRLPSELSGGMKKRVA----LARSIIFDN-TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (352)
Q Consensus 220 ~~~~~~~LSGGqrQRva----IArAL~~~~-~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~ 294 (352)
.++..+.||||||||++ +|++++.=. .--..+|+++||||||++||+.....++++|.++ + .
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~----------~ 1307 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---D----------L 1307 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---C----------C
Confidence 34456899999999997 575532000 0012479999999999999999999999999887 3 4
Q ss_pred EEEEEcCCH
Q 018638 295 SYVVVTHQH 303 (352)
Q Consensus 295 tvIivTHdl 303 (352)
++||+||++
T Consensus 1308 ~~i~~s~~~ 1316 (1353)
T TIGR02680 1308 DFVMTSERE 1316 (1353)
T ss_pred CEEEEccch
Confidence 799999975
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=6e-08 Score=97.93 Aligned_cols=75 Identities=19% Similarity=0.366 Sum_probs=60.0
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc---eEEEECCEeCCCCCChhh--hccceEEEEecCC
Q 018638 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKRAGLISDEE--ISGLRIGLVFQSA 176 (352)
Q Consensus 102 ~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~---G~I~i~G~~~~~~~~~~~--~~~~~ig~v~Q~~ 176 (352)
.+..+++++ +++.+||+++|+|+||+|||||+++|+++..++. |.|.++|+++........ ....++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 456799999 9999999999999999999999999999999987 999999987654321111 1124689998865
Q ss_pred C
Q 018638 177 A 177 (352)
Q Consensus 177 ~ 177 (352)
.
T Consensus 216 d 216 (428)
T PRK08149 216 D 216 (428)
T ss_pred C
Confidence 3
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-08 Score=92.70 Aligned_cols=29 Identities=38% Similarity=0.540 Sum_probs=27.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999876
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-07 Score=79.32 Aligned_cols=146 Identities=14% Similarity=0.080 Sum_probs=77.4
Q ss_pred EEEEcCCCchHHHHHHHHH--cCCCCCceEEEECCEeCCCCCChhhhccceEEEEecC-CCCCC----------------
Q 018638 120 VGIIGPSGTGKSTILKIIA--GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS-AALFD---------------- 180 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~--Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~-~~l~~---------------- 180 (352)
++|+|++|||||||++.|+ +..++.+|++...- ..... .. .-.+++-+ |.+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~-~~~~~----~~---~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 73 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQ-LINFF----NV---NDKFRLVDLPGYGYAKVSKEVKEKWGKLIE 73 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcce-eEEEE----Ec---cCeEEEecCCCccccccCHHHHHHHHHHHH
Confidence 6899999999999999999 77777777643211 10000 00 00111111 11100
Q ss_pred -CCCHHHHHHhhhhhc-CCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEE
Q 018638 181 -SLTVRENVGFLLYEN-SKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257 (352)
Q Consensus 181 -~lTV~eni~~~~~~~-~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLL 257 (352)
.++..+|+...+... ...........+.+++..++.. -....+...++++++++........... ....++++
T Consensus 74 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~--~~~~~~~~-- 149 (170)
T cd01876 74 EYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL--FEIDPPII-- 149 (170)
T ss_pred HHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh--ccCCCceE--
Confidence 011222222111100 0011112233455667766643 2234456778999988876655422100 00245665
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH
Q 018638 258 DEPTAGLDPIASTVVEDLIRSV 279 (352)
Q Consensus 258 DEPtsgLD~~~~~~l~~ll~~l 279 (352)
|++++|.....++++.|.++
T Consensus 150 --~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 150 --LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred --EEecCCCCCHHHHHHHHHHh
Confidence 99999999999999888764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.7e-08 Score=100.15 Aligned_cols=63 Identities=25% Similarity=0.393 Sum_probs=58.7
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCC
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~ 156 (352)
+.|+++.||...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 458999999888999999999999999999999999999999999999999999999887653
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.1e-07 Score=96.44 Aligned_cols=48 Identities=25% Similarity=0.424 Sum_probs=42.6
Q ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 250 VEPEVLLYDEPTAGLD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD-~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
.+|+++++|||+..|| +..+..+.+.++.+++.| .+++++||+++.+.
T Consensus 634 ~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~----------~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 634 GRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKN----------VSVIFATQSLADID 682 (811)
T ss_pred CCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcC----------CEEEEEECCHHHHh
Confidence 4799999999999999 788999999999998776 48999999998654
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-07 Score=92.73 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=60.9
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
++.+.-.+++|++++|+|+||+|||||++.|+|...|+.|+|.+++..... .....++.+++|+..+++ .....
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~-----tt~~~~l~~l~~~~~l~D-tpG~~ 258 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH-----TTTHRELHPLPSGGLLID-TPGMR 258 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc-----hhhhccEEEecCCCeecC-CCchh
Confidence 555666778999999999999999999999999999999999998753211 112336899999988886 35666
Q ss_pred HHHh
Q 018638 187 NVGF 190 (352)
Q Consensus 187 ni~~ 190 (352)
++.+
T Consensus 259 ~~~l 262 (356)
T PRK01889 259 ELQL 262 (356)
T ss_pred hhcc
Confidence 6554
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-07 Score=82.88 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCC-cccccCCCCCChHHHHHHH--HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 018638 206 LVKENLAAVGLK-GVEDRLPSELSGGMKKRVA--LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 206 ~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRva--IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~ 282 (352)
.+.++++..++. -..-.++..+|+||+|++. +++.+-. .+++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~------~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKF------GDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh------cCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 345666666664 3445577889999999987 6666532 123443 99999999999999999887654
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.4e-08 Score=96.69 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=57.1
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe
Q 018638 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (352)
Q Consensus 91 ~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~ 154 (352)
.++.++++..| .+..+++++ |+|.+|+.++|+|+||+|||||+++|+|+.+|+.|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 47788888888 467899999 9999999999999999999999999999999999988887764
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-07 Score=81.65 Aligned_cols=66 Identities=33% Similarity=0.498 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE-----------CCEeCCCCCChhhhc----cceEEEEecCCCCCCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI-----------RGRKRAGLISDEEIS----GLRIGLVFQSAALFDS 181 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i-----------~G~~~~~~~~~~~~~----~~~ig~v~Q~~~l~~~ 181 (352)
|++++|+||||||||||++.|++++.+. |.+.+ +|.+.... ....+. ...++.++|...++..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIAL-STEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCcccccc-CHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65555 44433222 111211 2247888888776666
Q ss_pred CCH
Q 018638 182 LTV 184 (352)
Q Consensus 182 lTV 184 (352)
.++
T Consensus 79 ~~~ 81 (179)
T TIGR02322 79 IPA 81 (179)
T ss_pred ChH
Confidence 555
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-07 Score=84.32 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=41.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~ 176 (352)
|++++|+||||||||||+++|+++..| .+.+.+..+....... ....+++++|++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAG--SENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchh--HHhheeEcHHHH
Confidence 789999999999999999999999876 5778777654321111 122578888874
|
|
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-07 Score=95.12 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=63.1
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hhh--ccceEEEEecCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEI--SGLRIGLVFQSAAL 178 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~~--~~~~ig~v~Q~~~l 178 (352)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+|+..|+.|.+.+.|++-...... ... .....+++++++..
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~ 210 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSD 210 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEecccc
Confidence 46799999 99999999999999999999999999999999999998866543221100 000 01236788898877
Q ss_pred CCCCCHHHHHHh
Q 018638 179 FDSLTVRENVGF 190 (352)
Q Consensus 179 ~~~lTV~eni~~ 190 (352)
+|.++.. +..+
T Consensus 211 ~p~~~r~-~~~~ 221 (422)
T TIGR02546 211 RPSLERL-KAAY 221 (422)
T ss_pred CCHHHHH-HHHH
Confidence 7754433 4434
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.6e-08 Score=93.30 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=57.0
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC----ChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI----SDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~----~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~ 190 (352)
++|++++++||||+||||++..|++.+.+..|+|.+.+.|..... ...+..+..+.+++|.....|..++++++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 579999999999999999999999999998899999887753210 0112233468999997665665566677654
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.1e-07 Score=95.50 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=74.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCce--------EEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHH
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--------EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVREN 187 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G--------~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~en 187 (352)
..+.+.|+||||+|||||+++|.++.++..| -|.++|..+. . .. ....|
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~-d~---------------------~~i~~ 230 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-W-DP---------------------REVTN 230 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-C-CH---------------------HHHhH
Confidence 3457999999999999999999999866544 3555553321 0 00 00011
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHH
Q 018638 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (352)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~ 267 (352)
..++. . .+...+.+.+.++.+|+.+.....+.++||| +|+||| +..||+.
T Consensus 231 ~llg~-----~-~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG-----------------------vL~LDE-i~~Ld~~ 280 (615)
T TIGR02903 231 PLLGS-----V-HDPIYQGARRDLAETGVPEPKTGLVTDAHGG-----------------------VLFIDE-IGELDPL 280 (615)
T ss_pred HhcCC-----c-cHHHHHHHHHHHHHcCCCchhcCchhhcCCC-----------------------eEEEec-cccCCHH
Confidence 11211 1 1111223455688889988888888888888 499999 7999999
Q ss_pred HHHHHHHHHHH
Q 018638 268 ASTVVEDLIRS 278 (352)
Q Consensus 268 ~~~~l~~ll~~ 278 (352)
.+..+++.|.+
T Consensus 281 ~Q~~Ll~~Le~ 291 (615)
T TIGR02903 281 LQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHhh
Confidence 99999888865
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-07 Score=85.41 Aligned_cols=39 Identities=38% Similarity=0.613 Sum_probs=33.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC------------CCceEEEECCEeC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA------------PDKGEVYIRGRKR 155 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~------------p~~G~I~i~G~~~ 155 (352)
++|++++|+||||||||||+++|++.++ |..|+ ++|.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~ 53 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDY 53 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCee
Confidence 5899999999999999999999999985 67777 466654
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.4e-07 Score=88.32 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=31.3
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCC-CCceEEEECC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRG 152 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-p~~G~I~i~G 152 (352)
..++.++.|.||+||||||+++.+.+.+. +..|.|....
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE 158 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence 35688999999999999999999998765 4456666543
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-07 Score=90.48 Aligned_cols=56 Identities=27% Similarity=0.450 Sum_probs=48.9
Q ss_pred EEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe
Q 018638 98 YKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (352)
Q Consensus 98 s~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~ 154 (352)
+..|. +..+++++ |.+.+|+.++|+|+||+|||||+++|+|+..|+.|.+.+-|++
T Consensus 50 ~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 50 DEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred eeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 33443 46799999 9999999999999999999999999999999999988876654
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-07 Score=94.85 Aligned_cols=73 Identities=25% Similarity=0.424 Sum_probs=56.9
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc---eEEEECCEeCCCCCCh-hhhccceEEEEecCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKRAGLISD-EEISGLRIGLVFQSAA 177 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~---G~I~i~G~~~~~~~~~-~~~~~~~ig~v~Q~~~ 177 (352)
..+++.+ |+|.+|++++|+|+||+|||||+++|+|+.+|+. |.|.+.|+++...... .....++.++|+|+..
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 4466666 9999999999999999999999999999999986 9999999986432111 0111235899999864
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-07 Score=89.03 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=51.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC--CCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhh
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLA--PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL 191 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~--p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~ 191 (352)
.++||.||||||||||+++|.+++. |++|.|.+-+.|-... ...... +.+++ |...+.+.+++.+.+.+.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~-~~~~l~--~~g~~-~~~g~P~s~D~~~l~~~L 134 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH-PNQVLK--ERNLM-KKKGFPESYDMHRLVKFL 134 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc-cHHHHH--HcCCc-cccCCChhccHHHHHHHH
Confidence 5999999999999999999999998 7889988866654322 122221 35554 666666677888777664
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.5e-07 Score=91.48 Aligned_cols=42 Identities=36% Similarity=0.501 Sum_probs=33.2
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceE-EEECCEe
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE-VYIRGRK 154 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~-I~i~G~~ 154 (352)
=+.+|+++.|.|++|+|||||+..++.......+. +++.+++
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 58999999999999999999999998766554444 4556553
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.6e-07 Score=92.01 Aligned_cols=51 Identities=27% Similarity=0.524 Sum_probs=47.8
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~ 154 (352)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+..++.|.|.+.|+.
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 46689999 9999999999999999999999999999999999999988864
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.8e-07 Score=89.47 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=48.2
Q ss_pred eEEEEeEEEEeCC-eeeeE-----------eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 91 LIDCRNVYKSFGE-KHILR-----------GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 91 ~l~~~nls~~y~~-~~~L~-----------~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
-++++||++.|++ +.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+..
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 4999999999975 46897 99999999999999999999999999999997653
|
Members of this family differ in the specificity of RNA binding. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-07 Score=68.82 Aligned_cols=39 Identities=33% Similarity=0.587 Sum_probs=31.9
Q ss_pred eEeeeEEEeC-CcEEEEEcCCCchHHHHHHHHHcCCCCCc
Q 018638 107 LRGVSFKIRH-GEAVGIIGPSGTGKSTILKIIAGLLAPDK 145 (352)
Q Consensus 107 L~~vsl~i~~-Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~ 145 (352)
+++.++++.+ |+++.|.||||||||||+.+|.=++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4456677775 57999999999999999999987776654
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.5e-07 Score=83.11 Aligned_cols=69 Identities=28% Similarity=0.404 Sum_probs=47.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceE----EEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE----VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~----I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~ 190 (352)
.+..++||.||||||||||++.|++++++++|. |.+++... ...... ..|++++... ++.+++.+.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~----~~~~~~--~~g~~~~~~~-~~~~d~~~~~~~ 103 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL----DNAVLD--AHGLRPRKGA-PETFDVAGLAAL 103 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC----CHHHHH--hcccccccCC-CCCCCHHHHHHH
Confidence 456799999999999999999999999999998 44444211 111111 3577766433 345667666554
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.6e-07 Score=89.91 Aligned_cols=61 Identities=23% Similarity=0.356 Sum_probs=50.9
Q ss_pred EEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 94 CRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 94 ~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
-..++.-+. +..+++ .+|++.+|+.++|+|+||+|||||+++|+++.+|+.|.|.+.|+..
T Consensus 117 R~~i~~~l~tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~ 178 (418)
T TIGR03498 117 RARVGEPLDTGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG 178 (418)
T ss_pred ccCcccccCCccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence 334444443 456775 6999999999999999999999999999999999999999888753
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.2e-07 Score=89.26 Aligned_cols=57 Identities=30% Similarity=0.462 Sum_probs=50.4
Q ss_pred EEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 98 YKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 98 s~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
+..| .+..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.|.|.+.|++.
T Consensus 118 ~~~~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 118 RDPLETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred hhhccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 3444 346799999 99999999999999999999999999999999999998888753
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-06 Score=69.75 Aligned_cols=59 Identities=29% Similarity=0.314 Sum_probs=40.3
Q ss_pred cccCCCCCChHHHHH-HHHHHH--HhccCCC---CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 018638 220 EDRLPSELSGGMKKR-VALARS--IIFDNTK---ESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (352)
Q Consensus 220 ~~~~~~~LSGGqrQR-vaIArA--L~~~~~~---~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~ 278 (352)
..+....+||||||. +.+|.+ |..--.. ....|++++|||||++||+.....++++|++
T Consensus 26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 356778999999953 333333 2210011 1235899999999999999999999998864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 352 | ||||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-36 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-30 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-30 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-29 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-29 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 6e-29 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-28 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-28 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-27 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-27 | ||
| 1g29_1 | 372 | Malk Length = 372 | 5e-25 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-24 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-24 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-24 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 7e-24 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 9e-24 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-23 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-23 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-23 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-23 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-23 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-23 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 8e-23 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-22 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-22 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 3e-21 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-21 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-20 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 7e-20 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 8e-20 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 8e-20 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-19 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-19 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-19 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 8e-19 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 8e-19 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 9e-19 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-18 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-18 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 8e-18 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-17 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-17 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-17 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-16 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-16 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-15 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-14 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-14 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-14 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-14 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-14 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-13 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-13 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-13 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-13 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-13 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 5e-13 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-12 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 9e-12 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-12 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 3e-11 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-11 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 5e-11 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 6e-11 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 9e-11 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-10 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-10 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 8e-10 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-10 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-09 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 3e-09 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 6e-09 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-08 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-08 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 4e-08 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-07 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-07 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-07 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-07 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-07 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 2e-06 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-06 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-06 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-05 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-05 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 1e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 4e-04 |
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 3e-56
Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 25/246 (10%)
Query: 89 DVLIDCRNV-YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
D ++ + Y H L+G++ I+ GE I+G +G GKST+ + G+L P G
Sbjct: 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR 64
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQI 203
+ + S + I LR IG+VFQ LF + +V ++V F N K+ +++I
Sbjct: 65 ILFDNKPIDY--SRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGA-VNMKLPEDEI 120
Query: 204 SELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ V L G++ ++D+ LS G KKRVA+A ++ +EP+VL+ DEPTAG
Sbjct: 121 RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA-GVL------VMEPKVLILDEPTAG 173
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323
LDP+ + + L+ + K E G+ + ++ TH + D + + EG+++
Sbjct: 174 LDPMGVSEIMKLLVEMQK--ELGI-------TIIIATHDIDIVPLYCDNVFVMKEGRVIL 224
Query: 324 QGMTHE 329
QG E
Sbjct: 225 QGNPKE 230
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 4e-55
Identities = 77/236 (32%), Positives = 122/236 (51%), Gaps = 25/236 (10%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ N+ K IL+G+S ++ GE V IIG SG+GKST+L I+ L AP +G+V++
Sbjct: 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
Query: 151 RGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGF-LLYENSKMRDEQISEL 206
G++ +++E+S LR +G VFQ L LT ENV +L ++ E
Sbjct: 64 EGKEVDYT-NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLK--MGKPKKEAKER 120
Query: 207 VKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
+ L+ +GL R P ELSGG ++RVA+AR++ + P +L DEPT LD
Sbjct: 121 GEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANE-------PILLFADEPTGNLDS 173
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
+ V D+ +++ G S V+VTH+ R + + +GK+V
Sbjct: 174 ANTKRVMDIFLKINEGG----------TSIVMVTHERELAELT-HRTLEMKDGKVV 218
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 2e-54
Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 30/262 (11%)
Query: 84 PEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143
+LI + + K IL+ +S++I G+ + G +G GK+T+L I+
Sbjct: 14 VPRGSHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA 73
Query: 144 DKGEVYIRGRKRAGLISDEEISGLR--IGLVFQS--AALFDSLTVRENV--GFL----LY 193
G V + G+ +R IG V S + V + V G +Y
Sbjct: 74 TSGTVNLFGKMPGK--VGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVY 131
Query: 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
++ + L VG+ + LS G K+RV +AR+++ P+
Sbjct: 132 QDIDDEIR---NEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ-------PQ 181
Query: 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
VL+ DEP AGLD IA E L+ + L++ + + VTH I ++
Sbjct: 182 VLILDEPAAGLDFIA---RESLLSILDS-----LSDSYPTLAMIYVTHFIEEITANFSKI 233
Query: 314 IFLYEGKIVWQGMTHEFTSSSN 335
+ L +G+ + QG + +S N
Sbjct: 234 LLLKDGQSIQQGAVEDILTSEN 255
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 2e-54
Identities = 64/258 (24%), Positives = 124/258 (48%), Gaps = 32/258 (12%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +++ K G+K IL+G+SF+I GE G+IGP+G GK+T L+II+ L+ P G V +
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELVKE 209
G+ ++ + I + + A + ++ E + F+ Y +I E+V+
Sbjct: 76 GKN---VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVER 129
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
GL S S GM +++ +AR+++ V P + + DEPT+GLD + +
Sbjct: 130 ATEIAGLGEKIKDRVSTYSKGMVRKLLIARALM-------VNPRLAILDEPTSGLDVLNA 182
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
V +++ ++G + +V +H + DR+ ++ G IV G E
Sbjct: 183 REVRKILKQASQEG----------LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 232
Query: 330 FTSSSNPIVQQFASGSLE 347
+ +++ + ++E
Sbjct: 233 -------LKERYKAQNIE 243
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 1e-53
Identities = 79/250 (31%), Positives = 122/250 (48%), Gaps = 38/250 (15%)
Query: 92 IDCRNVY-----KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
I+ NV + EK L VS I GE + + G +G+GKST+L+I+AGL+ P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQ 202
+V G ++ +R IG+ FQ F V + V F + +N +
Sbjct: 63 DVLYDGE-------RKKGYEIRRNIGIAFQYPEDQFFAE-RVFDEVAFAV-KNFYPDRDP 113
Query: 203 ISELVKENLAAVGL--KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ LVK+ + VGL +DR+P LSGG K+RVA+A S+I EP++L+ DEP
Sbjct: 114 V-PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIA-SVI------VHEPDILILDEP 165
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
GLD T + ++ G + ++++H T+ VDR++ L +GK
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLG----------KTVILISHDIETVINHVDRVVVLEKGK 215
Query: 321 IVWQGMTHEF 330
V+ G EF
Sbjct: 216 KVFDGTRMEF 225
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 3e-53
Identities = 85/272 (31%), Positives = 140/272 (51%), Gaps = 30/272 (11%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+ + +++K +G +L+GVS + R G+ + IIG SG+GKST L+ I L P +G +
Sbjct: 4 ENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 149 YIRG---------RKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSK 197
+ G + + ++ LR + +VFQ L+ +TV ENV +
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 123
Query: 198 MRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256
+ E + LA VG+ + + P LSGG ++RV++AR++ ++EP+VLL
Sbjct: 124 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL-------AMEPDVLL 176
Query: 257 YDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316
+DEPT+ LDP V +++ LA G + VVVTH+ R +IFL
Sbjct: 177 FDEPTSALDPELVGEVLRIMQQ--------LAEEG--KTMVVVTHEMGFARHVSSHVIFL 226
Query: 317 YEGKIVWQGMTHE-FTSSSNPIVQQFASGSLE 347
++GKI +G + F + +P +QQF GSL+
Sbjct: 227 HQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLK 258
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 1e-52
Identities = 84/287 (29%), Positives = 143/287 (49%), Gaps = 25/287 (8%)
Query: 71 DSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPS 126
+ ++ +DD +I N+ K F + L VS + G+ G+IG S
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGAS 63
Query: 127 GTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTV 184
G GKST+++ + L P +G V + G++ L S+ E++ R IG++FQ L S TV
Sbjct: 64 GAGKSTLIRCVNLLERPTEGSVLVDGQELTTL-SESELTKARRQIGMIFQHFNLLSSRTV 122
Query: 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244
NV L E +++ V E L+ VGL D PS LSGG K+RVA+AR++ +
Sbjct: 123 FGNVALPL-ELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN 181
Query: 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304
P+VLL D+ T+ LDP + + +L++ +++ GL + +++TH+
Sbjct: 182 -------PKVLLCDQATSALDPATTRSILELLKDINR--RLGL-------TILLITHEMD 225
Query: 305 TIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPIVQQFASGSLEGPI 350
++R D + + G+++ Q E F+ P+ Q+F +L I
Sbjct: 226 VVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDI 272
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 2e-52
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+ ++ KSF +L +S + GE + IIG SG GK+T+L+ +AG PD GE+ +
Sbjct: 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63
Query: 151 RGRKRAGLISDEEISGL-----RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
G+ I + + L R+G + Q LF LTV N+ + L N K R Q +
Sbjct: 64 SGK----TIFSKN-TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGL-GNGKGRTAQERQ 117
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
++ L G+ + R P ELSGG ++R ALAR++ +PE++L DEP + LD
Sbjct: 118 RIEAMLELTGISELAGRYPHELSGGQQQRAALARALA-------PDPELILLDEPFSALD 170
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 3e-52
Identities = 88/256 (34%), Positives = 133/256 (51%), Gaps = 22/256 (8%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+ID + KSFG +L+G++ IR GE V +IGPSG+GKST L+ + L D+GE+ I
Sbjct: 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83
Query: 151 RGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G D ++ +R +G+VFQ LF +TV N+ + K E+
Sbjct: 84 DGINLKA--KDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM 141
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E L VGLK P LSGG +RVA+AR++ ++EP+++L+DEPT+ LDP
Sbjct: 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL-------AMEPKIMLFDEPTSALDPEM 194
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
V +++ LAN G + VVVTH+ R DR++F+ G I+ +G
Sbjct: 195 VGEVLSVMKQ--------LANEG--MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPE 244
Query: 329 E-FTSSSNPIVQQFAS 343
+ F + + F S
Sbjct: 245 DLFDRPQHERTKAFLS 260
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 3e-52
Identities = 76/184 (41%), Positives = 112/184 (60%), Gaps = 23/184 (12%)
Query: 88 GDVLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
G + I+ V K + G +RGVSF+IR GE VG++GPSG+GK+TIL++IAGL P KG
Sbjct: 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70
Query: 147 EVYIRGRKRAGLISDEEISGL-----RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE 201
+V+I G+ ++ L +GLVFQ+ ALF +TV +NV F L ++ +
Sbjct: 71 DVWIGGK---------RVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGL-REKRVPKD 120
Query: 202 QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
++ V+E L + L+ +R P ELSGG ++RVALAR++ P+VLL+DEP
Sbjct: 121 EMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA-------PRPQVLLFDEPF 173
Query: 262 AGLD 265
A +D
Sbjct: 174 AAID 177
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 5e-51
Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 44/242 (18%)
Query: 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I +NV + E+ L ++ ++ +GE V I+GP+G+GK+T+L+ I+GLL P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSG 58
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFD-SLTVRENVGFLLYENSKMRDEQI 203
++I G E+ +R I ++ +TV + V E + +
Sbjct: 59 NIFING---------MEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYE-ELKGLDRDLF 108
Query: 204 SELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
E++K + L + + R +LS G V + ++ +PE++ DEP
Sbjct: 109 LEMLKA----LKLGEEILRRKLYKLSAGQSVLVRTSLALA-------SQPEIVGLDEPFE 157
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
+D V+ I+ K ++VTH+ + + + G +
Sbjct: 158 NVDAARRHVISRYIKEYGK-------------EGILVTHELDMLNLYKEYKAYFLVGNRL 204
Query: 323 WQ 324
Sbjct: 205 QG 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 166 bits (424), Expect = 2e-50
Identities = 49/236 (20%), Positives = 100/236 (42%), Gaps = 36/236 (15%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ R++ + K +L ++ I G V GP+G GK+T+LK I+ L P KGE+
Sbjct: 11 LEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 69
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL--LYENSKMRDEQISELVKE 209
G + ++ G +I + + + ++V + + + LY K+ +I +
Sbjct: 70 G------VPITKVKG-KIFFLPEEIIVPRKISVEDYLKAVASLY-GVKVNKNEIMDA--- 118
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
L +V + ++ +L ELS G +RV LA +++ V E+ + D+P +D +
Sbjct: 119 -LESVEVLDLKKKL-GELSQGTIRRVQLASTLL-------VNAEIYVLDDPVVAIDEDSK 169
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
V I + K+ ++ + + + D L++
Sbjct: 170 HKVLKSILEILKEK----------GIVIISSREELSY---CDVNENLHKYSTKIDK 212
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 6e-50
Identities = 80/242 (33%), Positives = 129/242 (53%), Gaps = 28/242 (11%)
Query: 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
++ +NV K++ + L+ V+ I+ GE V I+GPSG+GKST+L II L P +G
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR---IGLVFQSAALFDSLTVRENVGF-LLY-ENSKMRDE 201
EVYI K L D+E++ +R IG VFQ L LT ENV L++ M E
Sbjct: 61 EVYIDNIKTNDL-DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 202 QISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ + E L L+ + P++LSGG ++RVA+AR++ + P ++L D+P
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN-------PPIILADQP 172
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
T LD + L++ +++ E+G + VVVTH + R +R+I+L +G+
Sbjct: 173 TWALDSKTGEKIMQLLKKLNE--EDG-------KTVVVVTHDINVARFG-ERIIYLKDGE 222
Query: 321 IV 322
+
Sbjct: 223 VE 224
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 6e-50
Identities = 52/180 (28%), Positives = 96/180 (53%), Gaps = 26/180 (14%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ ++ + + L +S K+ GE I+GP+G GK+ L++IAG PD G + +
Sbjct: 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 151 RGRKRAGLISDEEISGLR-----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
G+ +++ L I V+Q+ +LF + V++N+ F + +M+ + +
Sbjct: 60 DGK---------DVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGM----RMKKIKDPK 106
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V + + ++ + DR P LSGG ++RVALAR+++ P++LL DEP + LD
Sbjct: 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT-------NPKILLLDEPLSALD 159
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 4e-45
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 27/175 (15%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
K G + V F++ + ++GP+G GKS L++IAG++ PD+GEV + G
Sbjct: 6 RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA-- 60
Query: 156 AGLISDEEISGLR-----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
+I+ L IG V Q ALF L+V N+ + L + + V+E
Sbjct: 61 -------DITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL---RNVERVERDRRVREM 110
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+G+ + DR P+ LSGG ++RVALAR+++ ++P +LL DEP + +D
Sbjct: 111 AEKLGIAHLLDRKPARLSGGERQRVALARALV-------IQPRLLLLDEPLSAVD 158
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 4e-44
Identities = 71/181 (39%), Positives = 102/181 (56%), Gaps = 19/181 (10%)
Query: 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
I +NV K F G+ L V+ I +GE GI+GPSG GK+T ++IIAGL P GE+Y
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 150 IRGRKRAGLISDEEISGLR-----IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
R L++ + IG+VFQ+ AL+ +LT EN+ F L N KM E+I
Sbjct: 64 FDDR----LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL-TNMKMSKEEIR 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
+ V+E + + V + P ELSG ++RVALAR+++ +P +LL DEP + L
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV-------KDPSLLLLDEPFSNL 171
Query: 265 D 265
D
Sbjct: 172 D 172
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 1e-42
Identities = 70/266 (26%), Positives = 123/266 (46%), Gaps = 32/266 (12%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
D ++ N+ K FGE L GVS + G+ IIGP+G+GKST++ +I G L D+G
Sbjct: 3 DTMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG 62
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV----------GF--LLYE 194
VY + E+ I FQ+ +TV EN+ L Y+
Sbjct: 63 RVYFENKDITNKEPA-ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK 121
Query: 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254
++E++ E + L + L + DR ELSGG K V + R+++ P++
Sbjct: 122 KWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM-------TNPKM 174
Query: 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314
++ DEP AG+ P + + + + + KG +++++ H+ + +D L
Sbjct: 175 IVMDEPIAGVAPGLAHDIFNHVLELKAKG----------ITFLIIEHRLDIVLNYIDHLY 224
Query: 315 FLYEGKIVWQGMTHEFTSS--SNPIV 338
++ G+I+ +G E + S+P V
Sbjct: 225 VMFNGQIIAEGRGEEEIKNVLSDPKV 250
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-42
Identities = 55/240 (22%), Positives = 108/240 (45%), Gaps = 23/240 (9%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+++ ++V E L +S ++R GE + ++GP+G GKST+L +AG+ KG +
Sbjct: 3 IVMQLQDV----AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQ 57
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
G+ S +++ L + Q + V + + D+ +EL+ +
Sbjct: 58 FAGQPLEAW-SATKLA-LHRAYLSQQQTPPFATPVWHYLTLHQH------DKTRTELLND 109
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
A+ L R ++LSGG +RV LA ++ + + ++LL DEP LD
Sbjct: 110 VAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 169
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ ++ ++ ++ ++G + V+ +H + R R L GK++ G E
Sbjct: 170 SALDKILSALSQQG----------LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 219
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 2e-41
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 42/252 (16%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
+ + + L++ + K +G L +IR GE +GI+GP+G GK+T +K++AG+
Sbjct: 349 RVDVERETLVEYPRLVKDYG-SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE 407
Query: 143 PDKGEVYIRGRKRAGLIS--DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
P +G+V ++ + I ++ TV E L
Sbjct: 408 PTEGKVEWDLT-----VAYKPQYIK-----AEYE-------GTVYE-----LLSKIDSSK 445
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ E L +G+ + DR +LSGG +RVA+A +++ + ++ L DEP
Sbjct: 446 LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLL-------RDADIYLLDEP 498
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
+A LD V IR + +K E + +VV H I DRLI EG+
Sbjct: 499 SAYLDVEQRLAVSRAIRHLMEKNE---------KTALVVEHDVLMIDYVSDRLIVF-EGE 548
Query: 321 IVWQGMTHEFTS 332
G
Sbjct: 549 PGRHGRALPPMG 560
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 55/241 (22%), Positives = 96/241 (39%), Gaps = 25/241 (10%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+ +G + ++ G VGI+GP+GTGK+T +KI+AG L P+ E
Sbjct: 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154
Query: 155 RAGLISDEEIS----GLRIGLVFQSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKE 209
E+ L+ G + + L + G ++ +E
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK---VRELLKKVDEVGKFEE 211
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
+ + L+ V DR +LSGG +RVA+A +++ + +DEP++ LD
Sbjct: 212 VVKELELENVLDRELHQLSGGELQRVAIAAALL-------RKAHFYFFDEPSSYLDIRQR 264
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
V +IR LAN G + +VV H + + D + +Y V+ +
Sbjct: 265 LKVARVIRR--------LANEGK--AVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 314
Query: 330 F 330
Sbjct: 315 K 315
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 3e-40
Identities = 48/255 (18%), Positives = 103/255 (40%), Gaps = 36/255 (14%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
+ D + + K G L + + + GE +GI+GP+G GK+T +I+ G +
Sbjct: 261 DLSKDLKTKMKWTKIIKKLG-DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT 319
Query: 143 PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 202
D+G V + +S + +F + +D TV++ + +
Sbjct: 320 ADEGSVTPEKQI----LS------YKPQRIFPN---YDG-TVQQYLENASKDALSTSSWF 365
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
E+ K + L + + ++LSGG +++ +A ++ E ++ + D+P++
Sbjct: 366 FEEVTKR----LNLHRLLESNVNDLSGGELQKLYIAATLA-------KEADLYVLDQPSS 414
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
LD +V I+ V ++ + A ++ H S DR+I +G+
Sbjct: 415 YLDVEERYIVAKAIKRVTRERK---------AVTFIIDHDLSIHDYIADRIIVF-KGEPE 464
Query: 323 WQGMTHEFTSSSNPI 337
G+ + +
Sbjct: 465 KAGLATSPVTLKTGM 479
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 33/235 (14%)
Query: 107 LRGVSFKI-RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165
+ ++ +G++G +G GK+T+LKI+AG + P+ G+ + K L +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVL---KRFR 70
Query: 166 GLRIGLVFQSAA---------LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 216
G I F+ + + + N + E + +
Sbjct: 71 GKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT--VNEILTKIDERGKKDEVKELLNM 128
Query: 217 KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI 276
+ ++ + LSGG +R+ +A S++ E +V ++D+P++ LD + I
Sbjct: 129 TNLWNKDANILSGGGLQRLLVAASLL-------READVYIFDQPSSYLDVRERMNMAKAI 181
Query: 277 RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331
R + K +VV H + D + +Y V+ ++ +
Sbjct: 182 RELLKNK-----------YVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYA 225
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 6e-40
Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 43/243 (17%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
D ++ K+ G +L + E + ++G +GTGK+T++K++AG L
Sbjct: 345 LQNDSASRAFSYPSLKKTQG-DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK 403
Query: 143 PDKGEVYIRGRKRAGLISDEEISGL--RIGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
PD+G+ + +S +I F TVR+ L ++ K+R
Sbjct: 404 PDEGQDIPKLN----------VSMKPQKIAPKFP-------GTVRQ----LFFK--KIRG 440
Query: 201 EQIS-ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
+ ++ + + + + + + D+ LSGG +RVA+ ++ + ++ L DE
Sbjct: 441 QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALG-------IPADIYLIDE 493
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319
P+A LD + +IR N + +V H D++I
Sbjct: 494 PSAYLDSEQRIICSKVIRRFIL--HNKK-------TAFIVEHDFIMATYLADKVIVFEGI 544
Query: 320 KIV 322
Sbjct: 545 PSK 547
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 3e-39
Identities = 55/248 (22%), Positives = 94/248 (37%), Gaps = 30/248 (12%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+V + R G+ +G++G +G GKST LKI+AG P+ G
Sbjct: 81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEW 140
Query: 155 RAGL--ISDEEISGLRIGLVFQSAA--------LFDSLTVRENVGFLLYENSKMRDEQIS 204
+ + E+ ++ ++ V + E K+R E+
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVG-ELLKLRMEKSP 199
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
E VK + + L+ V R +LSGG +R A+ S + E +V ++DEP++ L
Sbjct: 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCV-------QEADVYMFDEPSSYL 252
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYV-VVTHQHSTIRRAVDRLIFLYEGKIVW 323
D +IRS+ YV V H S + D + +Y V+
Sbjct: 253 DVKQRLNAAQIIRSLLAPT-----------KYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
Query: 324 QGMTHEFT 331
+T +
Sbjct: 302 GVVTLPAS 309
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-39
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 42/252 (16%)
Query: 83 EPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142
E + + L+ + K +G L +I+ GE +GI+GP+G GK+T +K++AG+
Sbjct: 279 RVEIERETLVTYPRLVKDYG-SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE 337
Query: 143 PDKGEVYIRGRKRAGLIS--DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
P +G++ ++ + I ++ TV E L
Sbjct: 338 PTEGKIEWDLT-----VAYKPQYIK-----ADYE-------GTVYE-----LLSKIDASK 375
Query: 201 EQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
+ E L +G+ + DR +ELSGG +RVA+A +++ + ++ L DEP
Sbjct: 376 LNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLL-------RDADIYLLDEP 428
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
+A LD V IR + +K E + +VV H I DRL+ EG+
Sbjct: 429 SAYLDVEQRLAVSRAIRHLMEKNE---------KTALVVEHDVLMIDYVSDRLMVF-EGE 478
Query: 321 IVWQGMTHEFTS 332
G
Sbjct: 479 PGKYGRALPPMG 490
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-31
Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 31/243 (12%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD------KGEVY 149
+ +G + ++ G VGI+GP+GTGKST +KI+AG L P+ +
Sbjct: 26 DCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV 85
Query: 150 IRGRKRAGL-ISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
IR + L E++ I V + + L + G ++ + ++
Sbjct: 86 IRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLIPKAVKGK---VIELLKKADETGKLE 140
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E + A+ L+ V +R LSGG +RVA+A +++ +DEP++ LD
Sbjct: 141 EVVKALELENVLEREIQHLSGGELQRVAIAAALL-------RNATFYFFDEPSSYLDIRQ 193
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYV-VVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
IR + ++G V VV H + + D + +Y V+ +
Sbjct: 194 RLNAARAIRRLSEEG-----------KSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFS 242
Query: 328 HEF 330
Sbjct: 243 QPK 245
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 2e-39
Identities = 65/174 (37%), Positives = 102/174 (58%), Gaps = 12/174 (6%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I N+ K FG L ++ KI+ GE + ++GPSG+GKST+L IAG+ P G++Y
Sbjct: 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD 63
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
+ +++ +GLVFQ+ AL+ +TV +N+ F L E K E+I + V+E
Sbjct: 64 EK----DVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPL-ELRKAPREEIDKKVREVA 118
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ + + +R P +LSGG ++RVA+AR+++ EPEVLL DEP + LD
Sbjct: 119 KMLHIDKLLNRYPWQLSGGQQQRVAIARALV-------KEPEVLLLDEPLSNLD 165
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 3e-38
Identities = 64/174 (36%), Positives = 105/174 (60%), Gaps = 12/174 (6%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
I N+ K FG+ + GVSF+++ GE V ++GPSG GK+T L ++AG+ P GE+Y
Sbjct: 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
L++D +G+VFQ+ AL+ +TV EN+ F L ++ +++ + V E
Sbjct: 64 DV----LVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPL-RARRISKDEVEKRVVEIA 118
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ + + DR P++LSGG ++RVALAR+++ +P+VLL+DEP + LD
Sbjct: 119 RKLLIDNLLDRKPTQLSGGQQQRVALARALV-------KQPKVLLFDEPLSNLD 165
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 1e-37
Identities = 68/180 (37%), Positives = 109/180 (60%), Gaps = 18/180 (10%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +V+K FGE +R +S +++ GE + ++GPSG GK+T L++IAGL P +G++YI
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 152 GRKRAGLISDEEISGL-----R-IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ L++D E R I +VFQS AL+ +TV +N+ F L + K+ ++I +
Sbjct: 64 DK----LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL-KLRKVPRQEIDQ 118
Query: 206 LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
V+E +GL + +R P ELSGG ++RVAL R+I+ +P+V L DEP + LD
Sbjct: 119 RVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIV-------RKPQVFLMDEPLSNLD 171
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 2e-37
Identities = 49/250 (19%), Positives = 103/250 (41%), Gaps = 46/250 (18%)
Query: 89 DVLIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
+ + N+ + ++ + + ++F + G+ + ++G +G GKST+L ++ G+ P +G+
Sbjct: 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV--------GFLLYENSKMR 199
+ + IG V Q + + +V + V S
Sbjct: 62 IEVYQ---------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH-- 104
Query: 200 DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
D Q+ + L + L + R + LSGG ++ + +AR+I E +++L DE
Sbjct: 105 DYQV---AMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIA-------SECKLILLDE 154
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319
PT+ LD +V L+ + + + + V THQ + + ++ + L +
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQ--SQNM-------TVVFTTHQPNQVVAIANKTLLLNKQ 205
Query: 320 KIVWQGMTHE 329
G T
Sbjct: 206 NFK-FGETRN 214
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-37
Identities = 61/174 (35%), Positives = 101/174 (58%), Gaps = 12/174 (6%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ N+ K FG + ++ I+ GE + ++GPSG GK+T L++IAGL P +G +Y
Sbjct: 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
R ++ I +VFQS A++ +TV EN+ F L + K ++I + V+
Sbjct: 72 DR----DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPL-KIKKFPKDEIDKRVRWAA 126
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ ++ + +R P++LSGG ++RVA+AR+I+ VEP+VLL DEP + LD
Sbjct: 127 ELLQIEELLNRYPAQLSGGQRQRVAVARAIV-------VEPDVLLMDEPLSNLD 173
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-36
Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 52/256 (20%)
Query: 92 IDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
++ +N+ Y S E IL+G++ K++ G+ V ++G SG GKST ++++ L P G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
I G+ I + LR IG+V Q LF + T+ EN+ Y + ++I +
Sbjct: 448 SIDGQD----IRTINVRYLREIIGVVSQEPVLFAT-TIAENI---RYGREDVTMDEIEKA 499
Query: 207 VKENLAA-------------VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
VKE A VG +G +LSGG K+R+A+AR+++ + P+
Sbjct: 500 VKEANAYDFIMKLPHQFDTLVGERGA------QLSGGQKQRIAIARALVRN-------PK 546
Query: 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+LL DE T+ LD + VV+ + + + +V+ H+ ST+R A D +
Sbjct: 547 ILLLDEATSALDTESEAVVQAALDKAREG-----------RTTIVIAHRLSTVRNA-DVI 594
Query: 314 IFLYEGKIVWQGMTHE 329
G IV QG H+
Sbjct: 595 AGFDGGVIVEQG-NHD 609
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 1e-35
Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 50/256 (19%)
Query: 92 IDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+ V Y + +L+G+S +++ G+ + ++G SG GKST+++++ P G V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
++ G++ I + LR +G+V Q LFD ++ EN+ + + + E+I
Sbjct: 1091 FLDGKE----IKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGD-NSRVVSYEEIVRA 1144
Query: 207 VKENLA-------------AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
KE VG KG ++LSGG K+R+A+AR+++ P
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKG------TQLSGGQKQRIAIARALVRQ-------PH 1191
Query: 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313
+LL DE T+ LD + VV++ + + + +V+ H+ STI+ A D +
Sbjct: 1192 ILLLDEATSALDTESEKVVQEALDKAREG-----------RTCIVIAHRLSTIQNA-DLI 1239
Query: 314 IFLYEGKIVWQGMTHE 329
+ + GK+ G TH+
Sbjct: 1240 VVIQNGKVKEHG-THQ 1254
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-35
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 18/174 (10%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154
+NV K++GE + + ++ I GE V +GPSG GKST+L++IAGL G+++I +
Sbjct: 7 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK- 65
Query: 155 RAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAA- 213
++D + +G+VFQS AL+ L+V EN+ F L + + + E I++ V + A
Sbjct: 66 ---RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGL-KLAGAKKEVINQRVNQ--VAE 119
Query: 214 -VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV-EPEVLLYDEPTAGLD 265
+ L + DR P LSGG ++RVA+ R++ V EP V L DEP + LD
Sbjct: 120 VLQLAHLLDRKPKALSGGQRQRVAIGRTL--------VAEPSVFLLDEPLSNLD 165
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-33
Identities = 68/272 (25%), Positives = 113/272 (41%), Gaps = 57/272 (20%)
Query: 83 EPEDDGDVL------IDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTI 133
P + ++V Y + +L+G++F + G+ ++GP+G+GKST+
Sbjct: 2 SPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 134 LKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFL 191
++ L P G+V + G + + L + V Q LF + REN+ +
Sbjct: 62 AALLQNLYQPTGGKVLLDGEP----LVQYDHHYLHTQVAAVGQEPLLF-GRSFRENIAYG 116
Query: 192 LYENSKMRDEQISELVKENLA-------------AVGLKGVEDRLPSELSGGMKKRVALA 238
L M E+I+ + E+ A VG G +LSGG ++ VALA
Sbjct: 117 LTRTPTM--EEITAVAMESGAHDFISGFPQGYDTEVGETGN------QLSGGQRQAVALA 168
Query: 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED-LIRSVHKKGENGLANPGNIASYV 297
R++I P +L+ D T+ LD V+ L S + +
Sbjct: 169 RALIRK-------PRLLILDNATSALDAGNQLRVQRLLYESPEWASR----------TVL 211
Query: 298 VVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
++T Q S RA ++FL EG + QG TH
Sbjct: 212 LITQQLSLAERA-HHILFLKEGSVCEQG-THL 241
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 4e-32
Identities = 72/265 (27%), Positives = 123/265 (46%), Gaps = 71/265 (26%)
Query: 92 IDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
I RN+ + IL ++ I+ GE +GI+G SG+GKST+ K+I P+ G+V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G ++ + + LR +G+V Q L + ++ +N+ N M E++
Sbjct: 68 IDGHD----LALADPNWLRRQVGVVLQDNVLLNR-SIIDNI---SLANPGMSVEKVIYAA 119
Query: 208 KENLAA-------------VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254
K A VG +G LSGG ++R+A+AR+++ + P++
Sbjct: 120 KLAGAHDFISELREGYNTIVGEQGA------GLSGGQRQRIAIARALVNN-------PKI 166
Query: 255 LLYDEPTAGLDPIASTVVEDLI----------RSVHKKGENGLANPGNIASYVVVTHQHS 304
L++DE T+ LD E +I R+V +++ H+ S
Sbjct: 167 LIFDEATSALD----YESEHVIMRNMHKICKGRTV-----------------IIIAHRLS 205
Query: 305 TIRRAVDRLIFLYEGKIVWQGMTHE 329
T++ A DR+I + +GKIV QG H+
Sbjct: 206 TVKNA-DRIIVMEKGKIVEQG-KHK 228
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 5e-30
Identities = 71/268 (26%), Positives = 117/268 (43%), Gaps = 75/268 (27%)
Query: 91 LIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
++ R+V F + ILR +SF+ + + GPSG GKSTI ++ P GE
Sbjct: 1 MLSARHV--DFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLY-ENSKMRDEQIS 204
+ I G+ I + + R IG V Q +A+ T+REN L Y DE +
Sbjct: 59 ITIDGQP----IDNISLENWRSQIGFVSQDSAIMAG-TIREN---LTYGLEGDYTDEDLW 110
Query: 205 ELVKENLA-------------AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251
+++ A VG +GV ++SGG ++R+A+AR+ + +
Sbjct: 111 QVLDLAFARSFVENMPDQLNTEVGERGV------KISGGQRQRLAIARAFLRN------- 157
Query: 252 PEVLLYDEPTAGLDPIASTVVEDLI----------RSVHKKGENGLANPGNIASYVVVTH 301
P++L+ DE TA LD + E ++ R+ +V+ H
Sbjct: 158 PKILMLDEATASLD----SESESMVQKALDSLMKGRTT-----------------LVIAH 196
Query: 302 QHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ STI A D++ F+ +G+I G H
Sbjct: 197 RLSTIVDA-DKIYFIEKGQITGSG-KHN 222
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-29
Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 62/260 (23%)
Query: 92 IDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
I+ NV F + L+ VSF + G+ + ++GPSG GKSTIL+++ G +
Sbjct: 54 IEFENV--HFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
I G+ IS + LR IG+V Q LF+ T+ +N+ Y ++++
Sbjct: 112 RIDGQD----ISQVTQASLRSHIGVVPQDTVLFND-TIADNIR---YGRVTAGNDEVEAA 163
Query: 207 VKENLAA----------------VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250
+ AA VG +G+ +LSGG K+RVA+AR+I+
Sbjct: 164 AQ---AAGIHDAIMAFPEGYRTQVGERGL------KLSGGEKQRVAIARTILKA------ 208
Query: 251 EPEVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
P ++L DE T+ LD T E I S+ K N + +VV H+ ST+ A
Sbjct: 209 -PGIILLDEATSALD----TSNERAIQASLAKVCAN--------RTTIVVAHRLSTVVNA 255
Query: 310 VDRLIFLYEGKIVWQGMTHE 329
D+++ + +G IV +G HE
Sbjct: 256 -DQILVIKDGCIVERG-RHE 273
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 8e-29
Identities = 72/270 (26%), Positives = 129/270 (47%), Gaps = 57/270 (21%)
Query: 79 NTLFEPEDDGDVLIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK 135
T E + ++ +V Y L+ ++F I G ++G +G+GKSTI K
Sbjct: 7 LTSHEKKFGVNIEFS--DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAK 64
Query: 136 IIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLY 193
++ + G++ I G+ ++ + +R IG+V Q LF+ T++ N +LY
Sbjct: 65 LLYRFYDAE-GDIKIGGKN----VNKYNRNSIRSIIGIVPQDTILFNE-TIKYN---ILY 115
Query: 194 ENSKMRDEQISELVK--------ENL-----AAVGLKGVEDRLPSELSGGMKKRVALARS 240
DE++ + K E L VG KG+ +LSGG ++R+A+AR
Sbjct: 116 GKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGM------KLSGGERQRIAIARC 169
Query: 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVV 299
++ D P+++++DE T+ LD + E L ++V +N + +++
Sbjct: 170 LLKD-------PKIVIFDEATSSLD----SKTEYLFQKAVEDLRKN--------RTLIII 210
Query: 300 THQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
H+ STI A + +I L +GKIV +G TH+
Sbjct: 211 AHRLSTISSA-ESIILLNKGKIVEKG-THK 238
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 8e-27
Identities = 78/258 (30%), Positives = 111/258 (43%), Gaps = 57/258 (22%)
Query: 92 IDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
ID +V SF E IL+ ++ I GE V +G SG GKST++ +I G+
Sbjct: 340 IDIDHV--SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ I G I D LR IGLV Q LF S TV+EN +L DE++ E
Sbjct: 398 ILIDGHN----IKDFLTGSLRNQIGLVQQDNILF-SDTVKEN---ILLGRPTATDEEVVE 449
Query: 206 LVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEV 254
K LP +LSGG K+R+++AR + + P +
Sbjct: 450 AAK----MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN-------PPI 498
Query: 255 LLYDEPTAGLDPIASTVVEDLI-RSVHK--KGENGLANPGNIASYVVVTHQHSTIRRAVD 311
L+ DE T+ LD E +I ++ K L +V H+ STI A D
Sbjct: 499 LILDEATSALD----LESESIIQEALDVLSKDRTTL----------IVAHRLSTITHA-D 543
Query: 312 RLIFLYEGKIVWQGMTHE 329
+++ + G IV G TH
Sbjct: 544 KIVVIENGHIVETG-THR 560
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 4e-26
Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 29/206 (14%)
Query: 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
D++++ ++++ +G H ++G+ K+ G+ V +IG +G GK+T L IAGL+ KG+
Sbjct: 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVREN--VGFLLYENSKMRDEQISE 205
+ G+ I+ + I LV + +F LTV EN +G ++ +
Sbjct: 63 IIFNGQDITNK-PAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEG------- 114
Query: 206 LVKENLAAV-----GLKGVEDRLPSELSGG---MKKRVALARSIIFDNTKESVEPEVLLY 257
+K +L + LK +L LSGG M +A+ R+++ P++L+
Sbjct: 115 -IKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQM---LAIGRALM-------SRPKLLMM 163
Query: 258 DEPTAGLDPIASTVVEDLIRSVHKKG 283
DEP+ GL PI + V ++I+ ++++G
Sbjct: 164 DEPSLGLAPILVSEVFEVIQKINQEG 189
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 45/285 (15%)
Query: 71 DSSKSENVNTLFEPEDDGDVLIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPS 126
+ E N L P +G + NV F +L GV+F ++ G V ++G +
Sbjct: 323 KPAIEEADNALALPNVEGS--VSFENV--EFRYFENTDPVLSGVNFSVKPGSLVAVLGET 378
Query: 127 GTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTV 184
G+GKST++ +I L+ P++G V + + ++ LR I V Q LF S T+
Sbjct: 379 GSGKSTLMNLIPRLIDPERGRVEVDELD----VRTVKLKDLRGHISAVPQETVLF-SGTI 433
Query: 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-------LSGGMKKRVAL 237
+EN L + D++I E K + + + S SGG K+R+++
Sbjct: 434 KEN---LKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297
AR+++ +P+VL+ D+ T+ +D T E I GL +
Sbjct: 491 ARALV-------KKPKVLILDDCTSSVD--PIT--EKRILD-------GLKRYTKGCTTF 532
Query: 298 VVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342
++T + T A D+++ L+EGK+ G TH+ ++
Sbjct: 533 IITQKIPTALLA-DKILVLHEGKVAGFG-THKELLEHCKPYREIY 575
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 5e-26
Identities = 73/267 (27%), Positives = 118/267 (44%), Gaps = 74/267 (27%)
Query: 92 IDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
++ RNV +F E LR ++ KI G+ V ++G SG+GKSTI +I D+G
Sbjct: 342 LEFRNV--TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ + G + + ++ LR + LV Q+ LF+ TV N+ + E EQI E
Sbjct: 400 ILMDGHD----LREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTEEYS--REQIEE 452
Query: 206 LVK--------ENL-----AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252
+ + +G GV LSGG ++R+A+AR+++ D
Sbjct: 453 AARMAYAMDFINKMDNGLDTIIGENGV------LLSGGQRQRIAIARALLRD-------S 499
Query: 253 EVLLYDEPTAGLDPIASTVVEDLI----------RSVHKKGENGLANPGNIASYVVVTHQ 302
+L+ DE T+ LD T E I R+ +V+ H+
Sbjct: 500 PILILDEATSALD----TESERAIQAALDELQKNRTS-----------------LVIAHR 538
Query: 303 HSTIRRAVDRLIFLYEGKIVWQGMTHE 329
STI +A D ++ + +G IV +G TH
Sbjct: 539 LSTIEQA-DEIVVVEDGIIVERG-THS 563
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 9e-26
Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 70/265 (26%)
Query: 92 IDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
+D ++V +F EK L VSF I G+ V ++G SG+GKSTI + D G
Sbjct: 342 VDVKDV--TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS 399
Query: 148 VYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE 205
+ + G + D +++ LR LV Q+ LF+ T+ N+ + + EQI +
Sbjct: 400 ICLDGHD----VRDYKLTNLRRHFALVSQNVHLFND-TIANNIAY--AAEGEYTREQIEQ 452
Query: 206 LVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEV 254
+ + +P + LSGG ++RVA+AR+++ D V
Sbjct: 453 AAR----QAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD-------APV 501
Query: 255 LLYDEPTAGLDPIASTVVEDLI----------RSVHKKGENGLANPGNIASYVVVTHQHS 304
L+ DE T+ LD T E I ++V +V+ H+ S
Sbjct: 502 LILDEATSALD----TESERAIQAALDELQKNKTV-----------------LVIAHRLS 540
Query: 305 TIRRAVDRLIFLYEGKIVWQGMTHE 329
TI +A D ++ + EG+I+ +G H
Sbjct: 541 TIEQA-DEILVVDEGEIIERG-RHA 563
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 99.0 bits (246), Expect = 8e-23
Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 47/237 (19%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ ++G K +L +++ GI GP+G GKST+++ IA
Sbjct: 436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA------------- 482
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDS-LTVRENVGFLLYENSKMRDEQISELVKEN 210
+ G + EE R V S +V + V E +K+
Sbjct: 483 NGQVDGFPTQEEC---RTVYVEHDIDGTHSDTSVLDFV--------FESGVGTKEAIKDK 531
Query: 211 LAAVGLKGVE-DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
L G S LSGG K ++ALAR+++ ++LL DEPT LD +
Sbjct: 532 LIEFGFTDEMIAMPISALSGGWKMKLALARAVL-------RNADILLLDEPTNHLDTVNV 584
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV-WQG 325
+ + + + + + ++H + + +I K+ ++G
Sbjct: 585 AWLVNYLNTCGI-------------TSITISHDSVFLDNVCEYIINYEGLKLRKYKG 628
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 8e-13
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 15/166 (9%)
Query: 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161
K + ++F+ + +IGP+G GKST++ ++ G L P GEVY
Sbjct: 684 TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH---------- 733
Query: 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED 221
RI + Q A + + + + +++ E + + E
Sbjct: 734 ---ENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDR--ETMDRANRQINENDAEA 788
Query: 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267
G +R+A S E LL + +
Sbjct: 789 MNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERW 834
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 36/243 (14%), Positives = 78/243 (32%), Gaps = 41/243 (16%)
Query: 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163
++I + + I + + I R++ + E
Sbjct: 759 EYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818
Query: 164 ISGLRIGLVFQSAALFDSLTVREN----VGFLLYENSKMRDEQISEL------------- 206
S L + + + + +N G L+ +SKM E +
Sbjct: 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRK 878
Query: 207 -VKENLAAVGLKG--VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
++E+ + +GL V LSGG K ++ LA P +++ DEPT
Sbjct: 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTW-------QRPHLIVLDEPTNY 931
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV- 322
LD + + ++ G + +++TH + + + + +G++
Sbjct: 932 LDRDSLGALSKALKEF----------EGGV---IIITHSAEFTKNLTEEVWAVKDGRMTP 978
Query: 323 WQG 325
Sbjct: 979 SGH 981
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-20
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 36/202 (17%)
Query: 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+ +++ + G IL +SF I G+ VG++G +G+GKST+L LL + GE+
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQ 78
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G + R G++ Q +F S T R+N L N+ D++I
Sbjct: 79 IDGVS----WDSITLEQWRKAFGVIPQKVFIF-SGTFRKN----LDPNAAHSDQEI---- 125
Query: 208 KENLAAVGLKGVEDRLPSEL-----------SGGMKKRVALARSIIFDNTKESVEPEVLL 256
+ VGL+ V ++ P +L S G K+ + LARS++ + ++LL
Sbjct: 126 WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL-------SKAKILL 178
Query: 257 YDEPTAGLDPIASTVVEDLIRS 278
DEP+A LDP+ ++ ++
Sbjct: 179 LDEPSAHLDPVTYQIIRRTLKQ 200
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 6e-20
Identities = 63/290 (21%), Positives = 123/290 (42%), Gaps = 58/290 (20%)
Query: 66 ATKFNDSSKSENVNTLFEPEDD-----GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAV 120
T F + E + ++ GD + N S +L+ ++FKI G+ +
Sbjct: 10 VTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNF--SLLGTPVLKDINFKIERGQLL 67
Query: 121 GIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180
+ G +G GK+++L +I G L P +G++ G RI Q++ +
Sbjct: 68 AVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------------RISFCSQNSWIM- 111
Query: 181 SLTVRENVGFLLYENSKMR--------DEQISELVKENLAAVGLKGVEDRLPSELSGGMK 232
T++EN+ + Y+ + R +E IS+ +++ +G G+ LSGG +
Sbjct: 112 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI------TLSGGQR 165
Query: 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IASTVVEDLIRSVHKKGENGLANPG 291
R++LAR++ D ++ L D P LD + E + + +AN
Sbjct: 166 ARISLARAVYKDA-------DLYLLDSPFGYLDVLTEKEIFESCVCKL-------MAN-- 209
Query: 292 NIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQF 341
+ ++VT + +++A D+++ L+EG + G T + P
Sbjct: 210 --KTRILVTSKMEHLKKA-DKILILHEGSSYFYG-TFSELQNLRPDFSSK 255
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 5e-19
Identities = 54/253 (21%), Positives = 108/253 (42%), Gaps = 59/253 (23%)
Query: 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+V+++ + G +L+ ++FKI G+ + + G +G GK+++L +I G L P +G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
++ G RI Q + + T++EN+ F + + +
Sbjct: 64 KIKHSG---------------RISFCSQFSWIM-PGTIKENIIF----GVSYDEYRYRSV 103
Query: 207 VK--------ENLAA-----VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253
+K A +G G+ LSGG + R++LAR++ D +
Sbjct: 104 IKACQLEEDISKFAEKDNIVLGEGGI------TLSGGQRARISLARAVYKD-------AD 150
Query: 254 VLLYDEPTAGLDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312
+ L D P LD + E + + +AN + ++VT + +++A D+
Sbjct: 151 LYLLDSPFGYLDVLTEKEIFESCVCKL-------MAN----KTRILVTSKMEHLKKA-DK 198
Query: 313 LIFLYEGKIVWQG 325
++ L+EG + G
Sbjct: 199 ILILHEGSSYFYG 211
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-18
Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 59/247 (23%)
Query: 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162
+ L G++F I G V ++G G GKS++L + + +G V I+G
Sbjct: 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------- 66
Query: 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK--------ENLAA- 213
+ V Q A + + ++REN+ F ++ + +++ E L +
Sbjct: 67 -----SVAYVPQQAWIQ-NDSLRENILF----GCQLEEPYYRSVIQACALLPDLEILPSG 116
Query: 214 ----VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP-IA 268
+G KGV LSGG K+RV+LAR++ + ++ L+D+P + +D +
Sbjct: 117 DRTEIGEKGV------NLSGGQKQRVSLARAVYSNA-------DIYLFDDPLSAVDAHVG 163
Query: 269 STVVEDLIRSVHKKGENG-LANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327
+ E++I G G L N + ++VTH S + + D +I + GKI G
Sbjct: 164 KHIFENVI------GPKGMLKN----KTRILVTHSMSYLPQV-DVIIVMSGGKISEMGSY 212
Query: 328 HEFTSSS 334
E +
Sbjct: 213 QELLARD 219
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 7e-18
Identities = 72/264 (27%), Positives = 124/264 (46%), Gaps = 56/264 (21%)
Query: 84 PEDDGDVLIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140
E G++ NV F +K +L+ ++F I+ G+ V ++GP+G+GK+TI+ ++
Sbjct: 349 REVRGEIEFK--NV--WFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 141 LAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKM 198
D+G++ + G I + S LR IG+V Q LF + TV+EN L Y N
Sbjct: 405 YDVDRGQILVDGID----IRKIKRSSLRSSIGIVLQDTILFST-TVKEN---LKYGNPGA 456
Query: 199 RDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTK 247
DE+I E K LP +LS G ++ +A+ R+ + +
Sbjct: 457 TDEEIKEAAK----LTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN--- 509
Query: 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN--PGNIASYVVVTHQHST 305
P++L+ DE T+ +D T E I + + G + +++ H+ +T
Sbjct: 510 ----PKILILDEATSNVD----TKTEKSI-------QAAMWKLMEGKTS--IIIAHRLNT 552
Query: 306 IRRAVDRLIFLYEGKIVWQGMTHE 329
I+ A D +I L +G+IV G H+
Sbjct: 553 IKNA-DLIIVLRDGEIVEMG-KHD 574
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 8e-12
Identities = 64/265 (24%), Positives = 105/265 (39%), Gaps = 79/265 (29%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYI 150
R+++ S + IL+GV+ + GE ++GP+G GKST+ KI+AG P+ +GE+ +
Sbjct: 7 RDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERGEILL 64
Query: 151 RG----------RKRAGLI----SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196
G R R GL E+ G+ FL
Sbjct: 65 DGENILELSPDERARKGLFLAFQYPVEVPGVT------------------IANFLRLALQ 106
Query: 197 KMRDEQIS-----ELVKENLAAVGLKGVEDRLPSEL----SGGMKKR-----VALARSII 242
++ VK+ L + E L L SGG KKR + +
Sbjct: 107 AKLGREVGVAEFWTKVKKALELLDWD--ESYLSRYLNEGFSGGEKKRNEILQLLV----- 159
Query: 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302
+EP + DE +GLD I D ++ V +G N + P +V+TH
Sbjct: 160 -------LEPTYAVLDETDSGLD-I------DALKVV-ARGVNAMRGPNF--GALVITH- 201
Query: 303 HSTIRRAV--DRLIFLYEGKIVWQG 325
+ I + D++ + +G++V G
Sbjct: 202 YQRILNYIQPDKVHVMMDGRVVATG 226
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 3e-11
Identities = 65/234 (27%), Positives = 100/234 (42%), Gaps = 62/234 (26%)
Query: 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYI 150
++++ S +K ILRG+S + GE I+GP+G+GKST+ +AG D G V
Sbjct: 24 KDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGTVEF 81
Query: 151 RG----------RKRAGLI----SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196
+G R G+ EI G+ F AL VR G
Sbjct: 82 KGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSN-QFFLQTALN---AVRSYRG-----QE 132
Query: 197 KMRDEQISELVKENLAAVGLKGVEDRLPSEL----SGGMKKR-----VALARSIIFDNTK 247
+ +L++E +A + + ED L + SGG KKR +A+
Sbjct: 133 TLDRFDFQDLMEEKIALLKMP--EDLLTRSVNVGFSGGEKKRNDILQMAV---------- 180
Query: 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301
+EPE+ + DE +GLD I D ++ V G N L + S+++VTH
Sbjct: 181 --LEPELCILDESDSGLD-I------DALKVV-ADGVNSLRDGKR--SFIIVTH 222
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 3e-10
Identities = 53/363 (14%), Positives = 106/363 (29%), Gaps = 111/363 (30%)
Query: 68 KFNDSSKSENVNTLFE--------PEDDGDVLIDCR----NVYKSFGEKHI--------L 107
KF + N L P + I+ R N + F + ++ L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 108 RGVSFKIRHGEAVGIIGPSGTGKST--------------------------------ILK 135
R ++R + V I G G+GK+ +L+
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 136 IIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV------- 188
++ LL R + + + + +S + L V NV
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 189 GFLLYENSKM----RDEQISELVKENLAA-VGLKGVEDRLPSELSGGMKKRVALARSIIF 243
F L + K+ R +Q+++ + + L L + + L + +
Sbjct: 261 AFNL--SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----LLKYL-- 311
Query: 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303
+ + P +L +P +++ + IR +GLA N +V
Sbjct: 312 -DCRPQDLPREVL------TTNPRRLSIIAESIR-------DGLATWDNW-KHVNCDKLT 356
Query: 304 STIRRAVDRL-------------IFLYEGKI-------VWQGMTHEFTSSSNPIVQQFAS 343
+ I +++ L +F I +W + +V +
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV---VVNKLHK 413
Query: 344 GSL 346
SL
Sbjct: 414 YSL 416
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 4e-09
Identities = 40/332 (12%), Positives = 103/332 (31%), Gaps = 78/332 (23%)
Query: 24 STLANS--------GKKPINSFYYKAKE--------EQRKVVCACVAPPRDLGTDGFPAT 67
+ +A K F+ K E + + + P +D
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 68 KFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSF--KI----RHGEAVG 121
K S + L + + + L+ NV + KI R +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----NAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE------EISGLRIGLVFQS 175
+ + T ++ L + + + K + + R+ ++
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSII--- 333
Query: 176 AALFDSLTVRENVGFLLYENSKMRD-EQISELVKENLAAVGLKGVEDRLPSELSGGMKKR 234
A +R+ + ++N K + ++++ +++ +L L+ P+E +K
Sbjct: 334 AES-----IRDGLA--TWDNWKHVNCDKLTTIIESSLNV--LE------PAE----YRKM 374
Query: 235 -VALARSIIF-DNTKESVEPEVL--LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANP 290
L+ +F + + +L ++ + + V ++ +HK L
Sbjct: 375 FDRLS---VFPPSAH--IPTILLSLIWFDVI-------KSDVMVVVNKLHKY---SLVEK 419
Query: 291 GNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
S + + + ++ ++ L+ IV
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHR-SIV 450
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-06
Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 15/126 (11%)
Query: 190 FLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-LSGGMKKRVALARSIIFDNTKE 248
F + K + + EN + + P LSGG + + LA +
Sbjct: 22 FAEFTEGKYSEVVVRAE--ENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYL- 78
Query: 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308
+ E +L+ DEPT LD LI + + ++V+H
Sbjct: 79 AGEISLLILDEPTPYLD---EERRRKLITIMER-----YLKKIP--QVILVSHDEELKDA 128
Query: 309 AVDRLI 314
A D +I
Sbjct: 129 A-DHVI 133
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 2e-05
Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 13/127 (10%)
Query: 191 LLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-LSGGMKKRVALARSIIFDNTKES 249
+ E ++ + ++ +EN + + P LSGG + + LA + +
Sbjct: 212 IFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSL-YLA 270
Query: 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309
E +L+ DEPT LD LI + + + ++V+H ++ A
Sbjct: 271 GEISLLILDEPTPYLDEER---RRKLITIMERYLKKI-------PQVILVSH-DEELKDA 319
Query: 310 VDRLIFL 316
D +I +
Sbjct: 320 ADHVIRI 326
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 38/191 (19%), Positives = 67/191 (35%), Gaps = 13/191 (6%)
Query: 73 SKSENVNTLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKST 132
K ++ + L+ N ++ G I+ + K G AV + GP GTGK+
Sbjct: 21 VKGLGLDESGLAKQAASGLVGQENAREACGV--IVELIKSKKMAGRAVLLAGPPGTGKTA 78
Query: 133 ILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192
+ IA L + G + + EI + ++ +R +
Sbjct: 79 LALAIAQELGSKVPFCPMVGSE----VYSTEIKKTEV----LMENFRRAIGLRIKETKEV 130
Query: 193 YENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252
YE ++ EN K + + + K++ L SI KE VE
Sbjct: 131 YEGEVTE---LTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEA 187
Query: 253 EVLLYDEPTAG 263
++Y E +G
Sbjct: 188 GDVIYIEANSG 198
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 100.0 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.97 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.96 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.96 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.96 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.95 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.95 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.95 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.94 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.94 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.94 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.94 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.93 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.92 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.92 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.92 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.92 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.91 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.91 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.91 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.91 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.91 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.9 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.9 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.9 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.89 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.89 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.88 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.88 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.88 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.86 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.86 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.85 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.85 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.85 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.85 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.85 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.85 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.85 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.84 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.83 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.82 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.81 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.8 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.8 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.8 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.79 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.76 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.76 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.76 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.75 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.72 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.71 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.71 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.71 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.71 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.7 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.7 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.69 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.69 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.69 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.69 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.68 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.66 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.65 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.64 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.64 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.59 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.58 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.58 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.58 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.54 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.54 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.53 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.52 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.52 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.51 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.51 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.5 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.48 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.47 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.47 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.47 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.43 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.42 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.31 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.3 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.29 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.28 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.28 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.25 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.25 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.24 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.24 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.23 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.23 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.19 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.15 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.06 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.98 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.9 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.9 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.88 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.86 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.85 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.85 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.77 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.76 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.72 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.67 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.66 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.64 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.62 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.62 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.6 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.58 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.54 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.51 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.48 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.43 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.41 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.41 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.4 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.37 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.34 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.27 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.25 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.25 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.24 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.23 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.18 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.17 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.15 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.14 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.13 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 98.12 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 98.08 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 98.05 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.05 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.05 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.02 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.02 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.93 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.92 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.92 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.9 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.89 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.88 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.88 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.86 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.86 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.83 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.81 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.78 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.78 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.74 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.74 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.73 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.73 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.7 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.67 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.67 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.59 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.57 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.54 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.51 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.5 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.5 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.48 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.43 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.42 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.42 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.38 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.28 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.25 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.21 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.21 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.19 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.16 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.13 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.11 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.08 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.07 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.07 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.02 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.97 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.95 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.93 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.91 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.89 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.88 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.86 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.86 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.86 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.82 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.8 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.79 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.76 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.76 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.76 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.74 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.71 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.71 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.7 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.7 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.69 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.66 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.65 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.65 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.63 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.63 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.63 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.59 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.56 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.56 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.55 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.53 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.51 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.49 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.45 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.44 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.41 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.38 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.33 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.32 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.3 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.29 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.27 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.27 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.27 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.25 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.25 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.25 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.23 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.22 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.21 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.2 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.2 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.2 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.19 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.19 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.19 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.19 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.19 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.19 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.18 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.18 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.18 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.15 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.14 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.14 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.12 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.12 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.12 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.12 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.11 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.11 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.1 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.1 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.09 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.09 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.08 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.06 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.05 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.04 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.04 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.03 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.0 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.0 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.0 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.99 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.99 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.97 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.97 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.96 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.95 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.95 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.95 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.93 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.9 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.89 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.88 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.87 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.87 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.86 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.85 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.85 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.84 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.84 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.82 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.8 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.78 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.78 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.75 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.75 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.74 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.74 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.72 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.72 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.7 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.7 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.69 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.69 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.69 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.67 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.67 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.67 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.66 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.66 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.65 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.65 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.64 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.63 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.63 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.62 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.62 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.62 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.57 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.56 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.55 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.54 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.54 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.54 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.53 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.53 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.53 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.53 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.52 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.51 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.51 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.5 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.5 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.5 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.48 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.48 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.48 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.47 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.46 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.46 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.46 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.45 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.45 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.44 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.44 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.44 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.44 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.44 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.44 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.42 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.42 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.41 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.41 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.41 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.4 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.4 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.38 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.37 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.35 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.33 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.33 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.28 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.28 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.26 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.26 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.25 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.23 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.22 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.18 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.17 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.14 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.14 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.12 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.1 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.1 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.09 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.08 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.07 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.06 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.04 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.02 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 95.0 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.99 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.99 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.96 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.93 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.93 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.93 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 94.89 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 94.88 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 94.87 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 94.85 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 94.84 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.8 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 94.79 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.75 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.7 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 94.7 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.68 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.64 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.54 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.5 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.44 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.36 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.33 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.27 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.19 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.19 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.08 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.02 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.01 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.06 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 93.9 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 93.86 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 93.84 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 93.8 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.8 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 93.66 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 93.66 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 93.64 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 93.58 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 93.58 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 93.55 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 93.53 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.51 | |
| 1knx_A | 312 | Probable HPR(Ser) kinase/phosphatase; HPR kinase, | 93.51 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 93.51 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 93.5 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 93.44 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 93.43 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 93.39 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 93.31 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 93.31 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 93.3 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.26 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 93.22 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 93.21 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-61 Score=474.35 Aligned_cols=240 Identities=32% Similarity=0.545 Sum_probs=212.1
Q ss_pred CCcceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 87 DGDVLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
...+||+++||+|+|++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.......
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34568999999999963 46999999999999999999999999999999999999999999999999987643222
Q ss_pred h-hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 163 E-ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 163 ~-~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
. ..+++||||||++.+|+.+||+||+.+++... +.+.++..+++.++|+.+||.++.+++|.+|||||||||+|||||
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~-~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 1 12346999999999999999999999987543 456677788899999999999999999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||+|||+.++..++++|++++++ | .|||+||||++++.++||||++|++|+
T Consensus 179 ~~-------~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g----------~Tii~vTHdl~~~~~~aDrv~vl~~G~ 241 (366)
T 3tui_C 179 AS-------NPKVLLCDQATSALDPATTRSILELLKDINRRLG----------LTILLITHEMDVVKRICDCVAVISNGE 241 (366)
T ss_dssp TT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC----------CEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 96 69999999999999999999999999999865 5 699999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++.|++++++. +.+++++.|+..
T Consensus 242 iv~~g~~~ev~~~p~~~~~~~~~~~ 266 (366)
T 3tui_C 242 LIEQDTVSEVFSHPKTPLAQKFIQS 266 (366)
T ss_dssp EEECCBHHHHHSSCCSHHHHHHHHH
T ss_pred EEEEcCHHHHHhCCCcHHHHHHHhh
Confidence 999999999764 567777777654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-61 Score=471.40 Aligned_cols=236 Identities=30% Similarity=0.481 Sum_probs=207.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+|+|+++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..........+++|
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 36999999999999999999999999999999999999999999999999999999999999998732111111123469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+||.+||+|||.|++... ....++..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~------ 155 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNG-KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP------ 155 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTS-SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT------
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc------
Confidence 99999999999999999999987432 34455667889999999999999999999999999999999999996
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||++||+..+.++++.|.++.++ | +|+|+||||++++..+||||++|++|+|++.|+++
T Consensus 156 -~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g----------~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 156 -DPELILLDEPFSALDEQLRRQIREDMIAALRANG----------KSAVFVSHDREEALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp -CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHH
Confidence 69999999999999999999999988887654 5 69999999999999999999999999999999999
Q ss_pred cccc-CCcHHHHHHhc
Q 018638 329 EFTS-SSNPIVQQFAS 343 (352)
Q Consensus 329 ~~~~-~~~~~~~~~~~ 343 (352)
+++. +.+..+..|+.
T Consensus 225 el~~~p~~~~~a~~~g 240 (359)
T 3fvq_A 225 ELYRQPADLDAALFIG 240 (359)
T ss_dssp HHHHSCSCHHHHHHHS
T ss_pred HHHhCcccHHHHHhcc
Confidence 9764 44566666654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-60 Score=472.06 Aligned_cols=231 Identities=32% Similarity=0.530 Sum_probs=211.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++||
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~-~~---~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-PA---ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-GG---GSCEE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC-HH---HCCEE
Confidence 599999999999999999999999999999999999999999999999999999999999999986532 21 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+||.+||+|||.|++... +.++++..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~------- 150 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA------- 150 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHT-TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH-------
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc-------
Confidence 9999999999999999999987543 45677778889999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+..+.++++.|++++++ | .|+|+||||++++..+||||++|++|+|++.|++++
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g----------~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG----------RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC----------CEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 69999999999999999999999999999765 6 699999999999999999999999999999999999
Q ss_pred cc-cCCcHHHHHHhc
Q 018638 330 FT-SSSNPIVQQFAS 343 (352)
Q Consensus 330 ~~-~~~~~~~~~~~~ 343 (352)
++ .+.+.++..|+.
T Consensus 221 l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 221 LYHYPADRFVAGFIG 235 (381)
T ss_dssp HHHCCSBHHHHHHSS
T ss_pred HHhCCccHHHHHhcC
Confidence 76 466788888764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-60 Score=445.54 Aligned_cols=236 Identities=35% Similarity=0.556 Sum_probs=205.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCC-CCChhhhccce
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG-LISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~-~~~~~~~~~~~ 168 (352)
.+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....... +++
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~-~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV-REE 101 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHH-HHH
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHH-hCc
Confidence 47999999999998899999999999999999999999999999999999999999999999998741 0111111 236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||||||++.+|+.+||+||+.++.....+....+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~----- 176 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM----- 176 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-----
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC-----
Confidence 999999999999999999999864222234455556778999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||+|||+.++..++++|++++++| .|||+||||++++.++||||++|++|++++.|+++
T Consensus 177 --~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 244 (263)
T 2olj_A 177 --EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG----------MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPE 244 (263)
T ss_dssp --CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 699999999999999999999999999998766 59999999999999999999999999999999988
Q ss_pred cccc-CCcHHHHHHhc
Q 018638 329 EFTS-SSNPIVQQFAS 343 (352)
Q Consensus 329 ~~~~-~~~~~~~~~~~ 343 (352)
++.. +..+.++.++.
T Consensus 245 ~~~~~~~~~~~~~~~~ 260 (263)
T 2olj_A 245 DLFDRPQHERTKAFLS 260 (263)
T ss_dssp HHHHSCCSHHHHHHHT
T ss_pred HHHhCcccHHHHHHHH
Confidence 8764 34556666653
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-60 Score=445.06 Aligned_cols=236 Identities=33% Similarity=0.531 Sum_probs=204.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCC----------CC
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG----------LI 159 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~----------~~ 159 (352)
++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ..
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 47999999999999899999999999999999999999999999999999999999999999998741 11
Q ss_pred Chh-hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHH
Q 018638 160 SDE-EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 160 ~~~-~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaI 237 (352)
... ...+++||||||++.+|+.+||+||+.++.....+.+..+..+++.++++.+||.+. .++++.+|||||||||+|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 111 111236999999999999999999999864222234455556778999999999998 999999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||+|||+.++..++++|++++++| .|||+||||++++..+||||++|+
T Consensus 165 AraL~~-------~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~d~v~~l~ 227 (262)
T 1b0u_A 165 ARALAM-------EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG----------KTMVVVTHEMGFARHVSSHVIFLH 227 (262)
T ss_dssp HHHHHT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT----------CCEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999997 699999999999999999999999999998766 599999999999999999999999
Q ss_pred CCeEEEeeccccccc-CCcHHHHHHh
Q 018638 318 EGKIVWQGMTHEFTS-SSNPIVQQFA 342 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~-~~~~~~~~~~ 342 (352)
+|++++.|+++++.. +..+.+..++
T Consensus 228 ~G~i~~~g~~~~~~~~~~~~~~~~~~ 253 (262)
T 1b0u_A 228 QGKIEEEGDPEQVFGNPQSPRLQQFL 253 (262)
T ss_dssp TTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred CCEEEEeCCHHHHHhCcchHHHHHHH
Confidence 999999999888754 3345555554
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-59 Score=436.43 Aligned_cols=223 Identities=36% Similarity=0.544 Sum_probs=193.6
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--h
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~--~ 164 (352)
||+++||+|+|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++........ .
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 5899999999963 469999999999999999999999999999999999999999999999999865432221 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL 241 (352)
.+.+||||||++.+|+.+||+||+.+++... .....++..+++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 2235999999999999999999999976432 134556667788999999999875 5999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||+|||+.++..++++|++++++ | .|||+||||++.+ .+||||++|++|+
T Consensus 161 ~~-------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vtHd~~~~-~~~d~i~~l~~G~ 222 (235)
T 3tif_A 161 AN-------NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG----------KTVVVVTHDINVA-RFGERIIYLKDGE 222 (235)
T ss_dssp TT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC----------CEEEEECSCHHHH-TTSSEEEEEETTE
T ss_pred Hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEcCCHHHH-HhCCEEEEEECCE
Confidence 97 69999999999999999999999999999765 6 5999999999965 7899999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
|++.++++++.
T Consensus 223 i~~~~~~~~~~ 233 (235)
T 3tif_A 223 VEREEKLRGFD 233 (235)
T ss_dssp EEEEEECC---
T ss_pred EEEEcChhhhc
Confidence 99999877753
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-60 Score=448.01 Aligned_cols=225 Identities=30% Similarity=0.537 Sum_probs=198.5
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 89 ~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.++|+++||+|+|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..........++
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 358999999999975 4699999999999999999999999999999999999999999999999987421111111234
Q ss_pred eEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 168 RIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 168 ~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+||||||++ .+| .+||+||+.|+... .+.+.++..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 85 ~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~-- 160 (275)
T 3gfo_A 85 SIGIVFQDPDNQLF-SASVYQDVSFGAVN-MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM-- 160 (275)
T ss_dssp SEEEECSSGGGTCC-SSBHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT--
T ss_pred cEEEEEcCcccccc-cCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc--
Confidence 699999997 345 68999999998753 345667777889999999999999999999999999999999999996
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~-~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..++++|++++ ++| .|||+||||++++..+||||++|++|+++++
T Consensus 161 -----~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 161 -----EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG----------ITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp -----CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC----------CEEEEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred -----CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 699999999999999999999999999997 556 5999999999999999999999999999999
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 226 g~~~~~~~ 233 (275)
T 3gfo_A 226 GNPKEVFA 233 (275)
T ss_dssp ECHHHHTH
T ss_pred CCHHHHhc
Confidence 99988754
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-59 Score=458.99 Aligned_cols=234 Identities=40% Similarity=0.671 Sum_probs=209.8
Q ss_pred CcceEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 88 GDVLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 88 ~~~~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
+..+|+++||+|+| +++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~---~~ 86 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-P---QK 86 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-G---GG
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-h---hh
Confidence 34689999999999 8888999999999999999999999999999999999999999999999999975432 1 13
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
++||||||++.+|+.+||+||+.|++... +.+.++..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~--- 162 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLREK-RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP--- 162 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT---
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc---
Confidence 46999999999999999999999987533 34556667889999999999999999999999999999999999996
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||++||+..+..+++.|+++.++ | .|+|+||||++++..+||||++|++|+|++.|
T Consensus 163 ----~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 228 (355)
T 1z47_A 163 ----RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG----------VTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228 (355)
T ss_dssp ----CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT----------CEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred ----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 69999999999999999999999999999765 6 59999999999999999999999999999999
Q ss_pred ccccccc-CCcHHHHHHhc
Q 018638 326 MTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 326 ~~~~~~~-~~~~~~~~~~~ 343 (352)
++++++. +.+..+..|+.
T Consensus 229 ~~~~l~~~p~~~~~~~~~g 247 (355)
T 1z47_A 229 TPEEVYEKPGTLFVASFIG 247 (355)
T ss_dssp CHHHHHHSCSSHHHHHHTT
T ss_pred CHHHHHhCccchHHHHhcC
Confidence 9998764 44566776653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-59 Score=429.92 Aligned_cols=218 Identities=34% Similarity=0.490 Sum_probs=194.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--hhccc
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~~~~~ 167 (352)
++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... ..++.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 4799999999999889999999999999999999999999999999999999999999999999975432111 11123
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+||||||++.+|+.+||+||+.++.... +....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~---- 157 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKM-GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALAN---- 157 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT----
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc----
Confidence 6999999999999999999999876433 24445556778999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..++++|++++++| .|||+||||++++ .+||++++|++|+++++|+
T Consensus 158 ---~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g----------~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 158 ---EPILLFADEPTGNLDSANTKRVMDIFLKINEGG----------TSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp ---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 699999999999999999999999999998766 5999999999998 7899999999999999884
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-59 Score=458.67 Aligned_cols=231 Identities=33% Similarity=0.570 Sum_probs=206.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~---~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-PK---YREVG 78 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GG---GTTEE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-hh---hCcEE
Confidence 599999999999999999999999999999999999999999999999999999999999999976432 11 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+++||+||+.|++.. .+.+.++..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~------- 150 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRA-RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK------- 150 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSS-SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 999999999999999999997632 223344456778999999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+..+..+++.|++++++ | .|+|+||||++++..+||||++|++|+|++.|++++
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG----------ITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 69999999999999999999999999999765 6 599999999999999999999999999999999999
Q ss_pred ccc-CCcHHHHHHhc
Q 018638 330 FTS-SSNPIVQQFAS 343 (352)
Q Consensus 330 ~~~-~~~~~~~~~~~ 343 (352)
++. +.+.++..|+.
T Consensus 221 l~~~p~~~~~~~~~g 235 (359)
T 2yyz_A 221 VYDSPKNMFVASFIG 235 (359)
T ss_dssp HHHSCSBHHHHHHSS
T ss_pred HHhCcccHHHHHHhC
Confidence 764 45667777764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-59 Score=441.90 Aligned_cols=236 Identities=25% Similarity=0.363 Sum_probs=203.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... .... ++.+
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~-~~~~-~~~i 87 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ-PKAL-ARTR 87 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSC-HHHH-HHHE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCC-HHHH-hheE
Confidence 5899999999999999999999999999999999999999999999999999999999999999986542 2222 2359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+++.+||+||+.++...+ ...+..+++.++++.+++.++.++++.+|||||||||+|||||++.|+ ..
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~-~~ 163 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ-PQ 163 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC-SS
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc-cC
Confidence 99999998877899999999976432 222335678899999999999999999999999999999999996100 00
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
.+|++|||||||+|||+.++..++++|++++++++ +|||+||||++++..+||||++|++|++++.|++++
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~---------~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~ 234 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP---------LAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEE 234 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSS---------EEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCC---------CEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 14999999999999999999999999999987642 699999999999999999999999999999999988
Q ss_pred cccCCcHHHHHHh
Q 018638 330 FTSSSNPIVQQFA 342 (352)
Q Consensus 330 ~~~~~~~~~~~~~ 342 (352)
+.. .+.+.+++
T Consensus 235 ~~~--~~~l~~~~ 245 (266)
T 4g1u_C 235 VLN--AETLTQWY 245 (266)
T ss_dssp HCC--HHHHHHHC
T ss_pred HhC--cHHHHHHh
Confidence 764 23445554
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-59 Score=458.46 Aligned_cols=231 Identities=35% Similarity=0.566 Sum_probs=208.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~---~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-PK---DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GG---GTTEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-Hh---HCcEE
Confidence 599999999999888999999999999999999999999999999999999999999999999976432 21 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+++||+||+.|++... +.+.++..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~------- 150 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELR-KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK------- 150 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc-------
Confidence 9999999999999999999987433 34556667789999999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+..+..+.+.|++++++ | .|+|+||||++++..+||||++|++|+|++.|++++
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG----------ITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 69999999999999999999999999999765 6 599999999999999999999999999999999999
Q ss_pred ccc-CCcHHHHHHhc
Q 018638 330 FTS-SSNPIVQQFAS 343 (352)
Q Consensus 330 ~~~-~~~~~~~~~~~ 343 (352)
++. +.+.++..|+.
T Consensus 221 ~~~~p~~~~~~~~~g 235 (362)
T 2it1_A 221 VYYKPKYKFVGGFLG 235 (362)
T ss_dssp HHHSCSBHHHHHHSB
T ss_pred HHhCccchHHHHHcC
Confidence 764 45667777764
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-59 Score=441.33 Aligned_cols=223 Identities=29% Similarity=0.492 Sum_probs=197.9
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK-EPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHHHHT
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-CHHHHHhCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999987543 222222336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhh-cCC-----------CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYE-NSK-----------MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~-~~~-----------~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRva 236 (352)
||||||++.+|+.+||+||+.++... ..+ ....+..+++.++++.+||.+..++++.+|||||||||+
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~ 163 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH
Confidence 99999999999999999999987532 111 223344567889999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||+|||+.++..++++|++++++| .|||+||||++++..+||||++|
T Consensus 164 iAraL~~-------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 164 IGRALMT-------NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG----------ITFLIIEHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp HHHHHHT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCCSTTGGGCSEEEEE
T ss_pred HHHHHHc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEEEEE
Confidence 9999997 699999999999999999999999999998766 59999999999999999999999
Q ss_pred eCCeEEEeecccc
Q 018638 317 YEGKIVWQGMTHE 329 (352)
Q Consensus 317 ~~G~iv~~g~~~~ 329 (352)
++|++++.|++++
T Consensus 227 ~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 227 FNGQIIAEGRGEE 239 (257)
T ss_dssp ETTEEEEEEESHH
T ss_pred ECCEEEEEeCHHH
Confidence 9999999998888
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-59 Score=458.39 Aligned_cols=235 Identities=33% Similarity=0.537 Sum_probs=208.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~~~~~~ 168 (352)
+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...... ....+++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 59999999999999999999999999999999999999999999999999999999999999987430000 0011346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||||||++.+|+++||+||+.|++... +.+.++..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~----- 156 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR----- 156 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT-----
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999987433 34566667789999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+..+..+++.|++++++ | .|+|+||||++++..+||||++|++|+|++.|++
T Consensus 157 --~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~ 224 (372)
T 1g29_1 157 --KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG----------VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSP 224 (372)
T ss_dssp --CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred --CCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence 69999999999999999999999999999765 6 5999999999999999999999999999999999
Q ss_pred ccccc-CCcHHHHHHhc
Q 018638 328 HEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 328 ~~~~~-~~~~~~~~~~~ 343 (352)
++++. +.+.++..|+.
T Consensus 225 ~~l~~~p~~~~~~~~~g 241 (372)
T 1g29_1 225 DEVYDKPANTFVAGFIG 241 (372)
T ss_dssp HHHHHSCSBHHHHHHSS
T ss_pred HHHHhCcccHHHHHHhC
Confidence 99764 45667777764
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-59 Score=433.66 Aligned_cols=224 Identities=28% Similarity=0.483 Sum_probs=198.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.+||+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK-PAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHHHTT
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-CHHHHHhCC
Confidence 3589999999999998999999999999999999999999999999999999999999999999997543 222222335
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-CCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-LKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g-L~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
||||||++.+|+.+||+||+.++.... ...++..+++.++++.++ +.+..++++.+|||||||||+|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~---- 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS---- 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT----
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcC--CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc----
Confidence 999999999999999999999864211 223345567888999995 9888999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..++++|++++++| .|||+||||++++.++||||++|++|++++.|++
T Consensus 157 ---~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g----------~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 223 (240)
T 1ji0_A 157 ---RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG----------TTILLVEQNALGALKVAHYGYVLETGQIVLEGKA 223 (240)
T ss_dssp ---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 699999999999999999999999999997766 5999999999999999999999999999999988
Q ss_pred ccccc
Q 018638 328 HEFTS 332 (352)
Q Consensus 328 ~~~~~ 332 (352)
+++..
T Consensus 224 ~~~~~ 228 (240)
T 1ji0_A 224 SELLD 228 (240)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-59 Score=458.16 Aligned_cols=231 Identities=32% Similarity=0.525 Sum_probs=201.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++||
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~---~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PK---DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GG---GGTEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-hh---hCcEE
Confidence 599999999999989999999999999999999999999999999999999999999999999976432 11 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+++||+||+.|++... +.+.++..+++.++++.+||.++.+++|++|||||||||+|||||+.
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~------- 158 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV------- 158 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999976322 34556667789999999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+..+..+++.|++++++ | .|+|+||||++++..+||||++|++|+|++.|++++
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK----------VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 69999999999999999999999999999765 6 599999999999999999999999999999999999
Q ss_pred ccc-CCcHHHHHHhc
Q 018638 330 FTS-SSNPIVQQFAS 343 (352)
Q Consensus 330 ~~~-~~~~~~~~~~~ 343 (352)
++. +.+.++..|+.
T Consensus 229 l~~~p~~~~~a~~~g 243 (372)
T 1v43_A 229 VYLRPNSVFVATFIG 243 (372)
T ss_dssp HHHCCSBHHHHHHSS
T ss_pred HHhCcccHHHHHHhC
Confidence 764 45667777764
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-59 Score=456.12 Aligned_cols=235 Identities=36% Similarity=0.543 Sum_probs=207.1
Q ss_pred eEEEEeEEEEeCCee--eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC-hhhhccc
Q 018638 91 LIDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS-DEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~~~--~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~-~~~~~~~ 167 (352)
+|+++||+|+|+++. +|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .....++
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 599999999998887 9999999999999999999999999999999999999999999999998743100 0011134
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+||||||++.+|+++||+||+.|++... +.+.++..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~---- 157 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK---- 157 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT----
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh----
Confidence 6999999999999999999999986432 34556667789999999999999999999999999999999999996
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+..+..+++.|++++++ | .|+|+||||++++..+||||++|++|+|++.|+
T Consensus 158 ---~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~ 224 (353)
T 1oxx_K 158 ---DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG----------VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224 (353)
T ss_dssp ---CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred ---CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 69999999999999999999999999999765 6 599999999999999999999999999999999
Q ss_pred cccccc-CCcHHHHHHhc
Q 018638 327 THEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 327 ~~~~~~-~~~~~~~~~~~ 343 (352)
+++++. +.+..+..|+.
T Consensus 225 ~~~l~~~p~~~~~~~~~g 242 (353)
T 1oxx_K 225 PEDLYDNPVSIQVASLIG 242 (353)
T ss_dssp HHHHHHSCSSHHHHHHHS
T ss_pred HHHHHhCcccHHHHHhcC
Confidence 999764 44566777764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-58 Score=451.88 Aligned_cols=227 Identities=30% Similarity=0.556 Sum_probs=202.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+|+|+++ +|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++... ... +++||
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~-~~~---~r~ig 75 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL-SPE---KHDIA 75 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS-CHH---HHTCE
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC-chh---hCcEE
Confidence 58999999999988 99999999999999999999999999999999999999999999999997542 221 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+++||+||+.|++.... .... +++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~-~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~------- 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKK-IKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT------- 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHC-CCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcC-CCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 99999999999999999999874332 2222 568899999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+..+..+.+.|++++++ | .|+|+||||++++..+||||++|++|+|++.|++++
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g----------~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNK----------LTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 69999999999999999999999999999765 5 599999999999999999999999999999999999
Q ss_pred ccc-CCcHHHHHHhc
Q 018638 330 FTS-SSNPIVQQFAS 343 (352)
Q Consensus 330 ~~~-~~~~~~~~~~~ 343 (352)
++. +.+..+..|+.
T Consensus 215 ~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 215 IFEKPVEGRVASFVG 229 (348)
T ss_dssp HHSSCCTTHHHHHHC
T ss_pred HHhCcccHHHHHhcC
Confidence 764 44566777764
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-58 Score=433.06 Aligned_cols=221 Identities=28% Similarity=0.492 Sum_probs=198.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+|+|+++.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ..... +++|
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~--~~~~~-~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE--EPHEV-RKLI 90 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT--CHHHH-HTTE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc--cHHHH-hhcE
Confidence 46999999999999999999999999999999999999999999999999999999999999998753 12222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+|+.+||+||+.++...+ +...++..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~------ 163 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV------ 163 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT------
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc------
Confidence 99999999999999999999865332 23444455678899999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..++++|++++++| .|||++|||++++..+|||+++|++|++++.|++++
T Consensus 164 -~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 232 (256)
T 1vpl_A 164 -NPRLAILDEPTSGLDVLNAREVRKILKQASQEG----------LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 232 (256)
T ss_dssp -CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred -CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHH
Confidence 699999999999999999999999999998766 599999999999999999999999999999998888
Q ss_pred cc
Q 018638 330 FT 331 (352)
Q Consensus 330 ~~ 331 (352)
+.
T Consensus 233 ~~ 234 (256)
T 1vpl_A 233 LK 234 (256)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=423.71 Aligned_cols=225 Identities=32% Similarity=0.500 Sum_probs=196.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|++ +|+||||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++... .. .+++||
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~---~~~~i~ 73 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PP---ERRGIG 73 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CT---TTSCCB
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-ch---hhCcEE
Confidence 5899999999986 49999999999 99999999999999999999999999999999999987532 11 133699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+.+||+||+.++.... ......+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~------- 143 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNV---ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI------- 143 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTS---CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHc---CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 9999999999999999999865321 112225678899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..++++|++++++ | .|||++|||++++..+|||+++|++|++++.|++++
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 213 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD----------VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT----------CCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 69999999999999999999999999999754 6 599999999999999999999999999999998888
Q ss_pred cccCCcHHHHHHh
Q 018638 330 FTSSSNPIVQQFA 342 (352)
Q Consensus 330 ~~~~~~~~~~~~~ 342 (352)
+....++++..++
T Consensus 214 ~~~~~~~~~~~~~ 226 (240)
T 2onk_A 214 LFSAKNGEVAEFL 226 (240)
T ss_dssp HHHSCCSSHHHHG
T ss_pred HHhCchHHHHHHh
Confidence 7543244555554
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-57 Score=431.92 Aligned_cols=229 Identities=27% Similarity=0.410 Sum_probs=193.8
Q ss_pred CCCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCC--CCCChh
Q 018638 85 EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA--GLISDE 162 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~--~~~~~~ 162 (352)
|+...++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .. ...
T Consensus 15 ~~~~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~-~~~ 93 (279)
T 2ihy_A 15 PRGSHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGY-SAE 93 (279)
T ss_dssp ----CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---C-CHH
T ss_pred CCCCCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccC-CHH
Confidence 334556899999999999999999999999999999999999999999999999999999999999998764 22 122
Q ss_pred hhccceEEEEecCCCC-C-CCCCHHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAAL-F-DSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l-~-~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI 237 (352)
.. +++||||||++.+ + +.+||+||+.++.... .....++..+++.++++.+||.++.++++.+|||||||||+|
T Consensus 94 ~~-~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 94 TV-RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HH-HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HH-cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 22 3369999999754 3 3469999999864211 111123345678899999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEE--EEEcCCHHHHHhhcCEEEE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY--VVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tv--IivTHdl~~i~~~aDrv~v 315 (352)
||||+. +|++|||||||+|||+.++..++++|++++++| .|| |+||||++++..+||||++
T Consensus 173 AraL~~-------~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tv~~iivtHd~~~~~~~~d~v~~ 235 (279)
T 2ihy_A 173 ARALMG-------QPQVLILDEPAAGLDFIARESLLSILDSLSDSY----------PTLAMIYVTHFIEEITANFSKILL 235 (279)
T ss_dssp HHHHHT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHC----------TTCEEEEEESCGGGCCTTCCEEEE
T ss_pred HHHHhC-------CCCEEEEeCCccccCHHHHHHHHHHHHHHHHCC----------CEEEEEEEecCHHHHHHhCCEEEE
Confidence 999997 699999999999999999999999999997766 489 9999999999999999999
Q ss_pred EeCCeEEEeeccccccc
Q 018638 316 LYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~~ 332 (352)
|++|++++.|+++++..
T Consensus 236 l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 236 LKDGQSIQQGAVEDILT 252 (279)
T ss_dssp EETTEEEEEEEHHHHCS
T ss_pred EECCEEEEECCHHHHhc
Confidence 99999999998888753
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-57 Score=424.97 Aligned_cols=217 Identities=37% Similarity=0.590 Sum_probs=191.4
Q ss_pred eEEEEeEEEEeC--C---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFG--E---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~--~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
||+++||+++|+ + +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. . ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~---~-~~- 76 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---Y-EI- 76 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH---H-HH-
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch---H-Hh-
Confidence 699999999997 4 679999999999999999999999999999999999999999999999998642 1 22
Q ss_pred cceEEEEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--cccccCCCCCChHHHHHHHHHHHHh
Q 018638 166 GLRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK--GVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 166 ~~~ig~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+.+||||||++ .+++.+||+||+.++.... ...++..+++.++++.+||. ++.++++.+|||||||||+|||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~ 154 (266)
T 2yz2_A 77 RRNIGIAFQYPEDQFFAERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIV 154 (266)
T ss_dssp GGGEEEECSSGGGGCCCSSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred hhhEEEEeccchhhcCCCcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHH
Confidence 33699999996 4556689999999865321 12222345688899999999 9999999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||+|||+.++..++++|++++++| .|||+||||++.+..+|||+++|++|+++
T Consensus 155 ~-------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tii~vtHd~~~~~~~~d~v~~l~~G~i~ 217 (266)
T 2yz2_A 155 H-------EPDILILDEPLVGLDREGKTDLLRIVEKWKTLG----------KTVILISHDIETVINHVDRVVVLEKGKKV 217 (266)
T ss_dssp T-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCCTTTGGGCSEEEEEETTEEE
T ss_pred c-------CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7 699999999999999999999999999997666 59999999999999999999999999999
Q ss_pred Eeecccccc
Q 018638 323 WQGMTHEFT 331 (352)
Q Consensus 323 ~~g~~~~~~ 331 (352)
+.|+++++.
T Consensus 218 ~~g~~~~~~ 226 (266)
T 2yz2_A 218 FDGTRMEFL 226 (266)
T ss_dssp EEEEHHHHH
T ss_pred EeCCHHHHh
Confidence 999887764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-57 Score=420.69 Aligned_cols=220 Identities=26% Similarity=0.418 Sum_probs=188.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--CCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
||+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|+++|+++... ......+..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~-~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL-SPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTS-CHHHHHHTT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCC-CHHHHHhCc
Confidence 69999999999998999999999999999999999999999999999999 789999999999997543 222222335
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhc-C-CCCHHHHHHHHHHHHHHcCC-CcccccCCCC-CChHHHHHHHHHHHHhcc
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYEN-S-KMRDEQISELVKENLAAVGL-KGVEDRLPSE-LSGGMKKRVALARSIIFD 244 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~-~-~~~~~~~~~~v~~~l~~~gL-~~~~~~~~~~-LSGGqrQRvaIArAL~~~ 244 (352)
++|+||++.+|+.+||+||+.++.... . .....+..+++.++++.+|+ .++.++++.+ |||||||||+|||||+.
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~- 160 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL- 160 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH-
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc-
Confidence 899999999999999999998865321 1 12334445678899999999 5889999999 99999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh-cCEEEEEeCCeEEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLIFLYEGKIVW 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~-aDrv~vL~~G~iv~ 323 (352)
+|++|||||||+|||+.++..++++|++++++| .|||+||||++++..+ ||||++|++|++++
T Consensus 161 ------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 161 ------EPTYAVLDETDSGLDIDALKVVARGVNAMRGPN----------FGALVITHYQRILNYIQPDKVHVMMDGRVVA 224 (250)
T ss_dssp ------CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTT----------CEEEEECSSSGGGGTSCCSEEEEEETTEEEE
T ss_pred ------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhcCCEEEEEECCEEEE
Confidence 599999999999999999999999999996555 5999999999999988 59999999999999
Q ss_pred eeccc
Q 018638 324 QGMTH 328 (352)
Q Consensus 324 ~g~~~ 328 (352)
.|+++
T Consensus 225 ~g~~~ 229 (250)
T 2d2e_A 225 TGGPE 229 (250)
T ss_dssp EESHH
T ss_pred EeCHH
Confidence 99776
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-56 Score=420.56 Aligned_cols=224 Identities=29% Similarity=0.428 Sum_probs=192.4
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--CCCCceEEEECCEeCCCCCChhhhcc
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|+++|+++... ......+
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~-~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL-SPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGS-CHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcC-CHHHHhh
Confidence 4579999999999989999999999999999999999999999999999999 478999999999987543 2222222
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhh----cC--CCCHHHHHHHHHHHHHHcCCC-cccccCCC-CCChHHHHHHHHH
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYE----NS--KMRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALA 238 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~----~~--~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~-~LSGGqrQRvaIA 238 (352)
.+|+||||++.+|+.+||.||+.+.... .. ..+.++..+++.++++.+||. ...++++. +|||||||||+||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 3599999999999999999999875421 11 123445566788999999996 57888987 5999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh-cCEEEEEe
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLIFLY 317 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~-aDrv~vL~ 317 (352)
|||+. +|++|||||||+|||+.++..++++|++++++| .|||+||||++++..+ |||+++|+
T Consensus 177 raL~~-------~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tviivtHd~~~~~~~~~d~v~~l~ 239 (267)
T 2zu0_C 177 QMAVL-------EPELCILDESDSGLDIDALKVVADGVNSLRDGK----------RSFIIVTHYQRILDYIKPDYVHVLY 239 (267)
T ss_dssp HHHHH-------CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSS----------CEEEEECSSGGGGGTSCCSEEEEEE
T ss_pred HHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeeCHHHHHhhcCCEEEEEE
Confidence 99997 599999999999999999999999999986555 5999999999999886 89999999
Q ss_pred CCeEEEeeccccc
Q 018638 318 EGKIVWQGMTHEF 330 (352)
Q Consensus 318 ~G~iv~~g~~~~~ 330 (352)
+|++++.|+++++
T Consensus 240 ~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 240 QGRIVKSGDFTLV 252 (267)
T ss_dssp TTEEEEEECTTHH
T ss_pred CCEEEEEcCHHHH
Confidence 9999999987765
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-55 Score=411.95 Aligned_cols=210 Identities=22% Similarity=0.339 Sum_probs=188.4
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+||+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ +.+
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~---------------~~~ 67 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV---------------YQS 67 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE---------------CSC
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE---------------ecc
Confidence 4799999999998 888999999999999999999999999999999999999999999982 125
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
||||||++.+++.+||+||+.++.....+ .......+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 68 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~-- 145 (253)
T 2nq2_C 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS-- 145 (253)
T ss_dssp EEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT--
T ss_pred EEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc--
Confidence 99999999998889999999987532211 1123345678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..++++|++++++ | .|||++|||++++..+|||+++|++|+ ++.
T Consensus 146 -----~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~ 209 (253)
T 2nq2_C 146 -----ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQN----------MTVVFTTHQPNQVVAIANKTLLLNKQN-FKF 209 (253)
T ss_dssp -----TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSC----------CEEEEEESCHHHHHHHCSEEEEEETTE-EEE
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEEeCCe-Eec
Confidence 69999999999999999999999999999876 5 599999999999999999999999999 999
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 210 g~~~~~~~ 217 (253)
T 2nq2_C 210 GETRNILT 217 (253)
T ss_dssp EEHHHHCC
T ss_pred CCHHHHhC
Confidence 98888753
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-55 Score=412.13 Aligned_cols=214 Identities=31% Similarity=0.512 Sum_probs=183.5
Q ss_pred eEEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y--~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
-|+++||+|+| +++.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .... +.+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~-~~~~-~~~ 84 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD-PNWL-RRQ 84 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC-HHHH-HHH
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-HHHH-Hhc
Confidence 39999999999 4678999999999999999999999999999999999999999999999999976432 2222 236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccccc-----------CCCCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR-----------LPSELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSGGqrQRvaI 237 (352)
||||||++.+|+ .||+||+.++.. .... +++.++++.+++.++.++ ++.+|||||||||+|
T Consensus 85 i~~v~Q~~~l~~-~tv~enl~~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~i 156 (247)
T 2ff7_A 85 VGVVLQDNVLLN-RSIIDNISLANP---GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 156 (247)
T ss_dssp EEEECSSCCCTT-SBHHHHHTTTCT---TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHH
T ss_pred EEEEeCCCcccc-ccHHHHHhccCC---CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHH
Confidence 999999999987 699999988531 1222 345667777777665554 458999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||++||+.++..++++|+++. +| .|||+||||++.+.. ||||++|+
T Consensus 157 AraL~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g----------~tviivtH~~~~~~~-~d~v~~l~ 217 (247)
T 2ff7_A 157 ARALVN-------NPKILIFDEATSALDYESEHVIMRNMHKIC-KG----------RTVIIIAHRLSTVKN-ADRIIVME 217 (247)
T ss_dssp HHHHTT-------CCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TT----------SEEEEECSSGGGGTT-SSEEEEEE
T ss_pred HHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CC----------CEEEEEeCCHHHHHh-CCEEEEEE
Confidence 999997 699999999999999999999999999995 45 599999999999865 99999999
Q ss_pred CCeEEEeecccccccC
Q 018638 318 EGKIVWQGMTHEFTSS 333 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~ 333 (352)
+|++++.|+++++...
T Consensus 218 ~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 218 KGKIVEQGKHKELLSE 233 (247)
T ss_dssp TTEEEEEECHHHHHTS
T ss_pred CCEEEEECCHHHHHhC
Confidence 9999999988887654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-56 Score=419.76 Aligned_cols=226 Identities=25% Similarity=0.423 Sum_probs=190.8
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 90 ~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+|+++||+++|++ +.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ..... +
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~-~~~~~-~ 92 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY-DHHYL-H 92 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB-CHHHH-H
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccC-CHHHH-h
Confidence 47999999999986 7899999999999999999999999999999999999999999999999987532 22222 2
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHH-----HHHHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHH
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI-----SELVKENLAAV--GLKGVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~-----~~~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIAr 239 (352)
.+||||||++.+|+ .||+|||.++.... ...++. ...+.++++.+ |+....++++.+|||||||||+|||
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 93 TQVAAVGQEPLLFG-RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HHEEEECSSCCCCS-SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHH
T ss_pred ccEEEEecCCcccc-ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHH
Confidence 36999999999987 59999999864211 111211 12345678888 7888889999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
||+. +|+||||||||++||+.++..++++|+++.++ | .|||+||||++++.. ||||++|++
T Consensus 170 aL~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g----------~tviivtHd~~~~~~-~d~v~~l~~ 231 (271)
T 2ixe_A 170 ALIR-------KPRLLILDNATSALDAGNQLRVQRLLYESPEWAS----------RTVLLITQQLSLAER-AHHILFLKE 231 (271)
T ss_dssp HHTT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTT----------SEEEEECSCHHHHTT-CSEEEEEET
T ss_pred HHhc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcC----------CEEEEEeCCHHHHHh-CCEEEEEEC
Confidence 9997 69999999999999999999999999998643 5 599999999999875 999999999
Q ss_pred CeEEEeecccccccCCcHHH
Q 018638 319 GKIVWQGMTHEFTSSSNPIV 338 (352)
Q Consensus 319 G~iv~~g~~~~~~~~~~~~~ 338 (352)
|++++.|+++++......+.
T Consensus 232 G~i~~~g~~~~l~~~~~~~~ 251 (271)
T 2ixe_A 232 GSVCEQGTHLQLMERGGCYR 251 (271)
T ss_dssp TEEEEEECHHHHHHHTSHHH
T ss_pred CEEEEECCHHHHHhCcHHHH
Confidence 99999998888764444443
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-55 Score=423.66 Aligned_cols=214 Identities=29% Similarity=0.480 Sum_probs=183.6
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.|+++||+|+|+ ++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+|
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~-~~~~-r~~i 130 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT-QASL-RSHI 130 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC-HHHH-HHTE
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC-HHHH-hcce
Confidence 499999999995 578999999999999999999999999999999999999999999999999987643 2222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccc-----------ccCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSGGqrQRvaIA 238 (352)
|||||++.+|+ .||+|||.++... ... +++.++++.+++.++. .+.+.+|||||||||+||
T Consensus 131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~---~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 131 GVVPQDTVLFN-DTIADNIRYGRVT---AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTSTT---CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEEecCCccCc-ccHHHHHHhhccc---CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence 99999999996 5999999986421 222 2345566666665444 455579999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||++ +|+||||||||++||+.++..+++.|+++.+ + .|+|+||||++.+.. ||||++|++
T Consensus 203 RAL~~-------~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~----------~Tvi~itH~l~~~~~-aD~i~vl~~ 263 (306)
T 3nh6_A 203 RTILK-------APGIILLDEATSALDTSNERAIQASLAKVCA-N----------RTTIVVAHRLSTVVN-ADQILVIKD 263 (306)
T ss_dssp HHHHH-------CCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-T----------SEEEEECCSHHHHHT-CSEEEEEET
T ss_pred HHHHh-------CCCEEEEECCcccCCHHHHHHHHHHHHHHcC-C----------CEEEEEEcChHHHHc-CCEEEEEEC
Confidence 99998 5999999999999999999999999999865 3 499999999999987 999999999
Q ss_pred CeEEEeecccccccC
Q 018638 319 GKIVWQGMTHEFTSS 333 (352)
Q Consensus 319 G~iv~~g~~~~~~~~ 333 (352)
|+|++.|++++++..
T Consensus 264 G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 264 GCIVERGRHEALLSR 278 (306)
T ss_dssp TEEEEEECHHHHHHH
T ss_pred CEEEEECCHHHHHhc
Confidence 999999998887654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-55 Score=409.19 Aligned_cols=213 Identities=26% Similarity=0.397 Sum_probs=189.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.||+++||+++ .+|+||||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++... ..... +.+|
T Consensus 3 ~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~-~~~~~-~~~i 75 (249)
T 2qi9_C 3 IVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAW-SATKL-ALHR 75 (249)
T ss_dssp EEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGS-CHHHH-HHHE
T ss_pred cEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcC-CHHHH-hceE
Confidence 47999999987 6999999999999999999999999999999999999999 9999999987532 22222 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+|+.+||+||+.++... ... .+++.++++.+||.++.++++.+|||||||||+|||||+.+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~----- 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHD--KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI----- 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSS--TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHH-----
T ss_pred EEECCCCccCCCCcHHHHHHHhhcc--CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC-----
Confidence 9999999999889999999885311 112 45678899999999999999999999999999999999984
Q ss_pred CCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 250 VEPE-------VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 250 ~~p~-------llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
|+ +|||||||+|||+.++..+.++|+++.++| .|||++|||++++..+|||+++|++|+++
T Consensus 145 --p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tviivtHd~~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 145 --TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQG----------LAIVMSSHDLNHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp --CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred --CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 88 999999999999999999999999997666 59999999999999999999999999999
Q ss_pred Eeeccccccc
Q 018638 323 WQGMTHEFTS 332 (352)
Q Consensus 323 ~~g~~~~~~~ 332 (352)
+.|+++++..
T Consensus 213 ~~g~~~~~~~ 222 (249)
T 2qi9_C 213 ASGRREEVLT 222 (249)
T ss_dssp EEEEHHHHSC
T ss_pred EeCCHHHHhc
Confidence 9998888753
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-55 Score=407.33 Aligned_cols=224 Identities=29% Similarity=0.524 Sum_probs=189.1
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
||+++||+++| +++.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...... . .+.+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-~-~~~~i 78 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE-N-WRSQI 78 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCS-C-CTTTC
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHH-H-HHhhE
Confidence 58999999999 667899999999999999999999999999999999999999999999999987543211 1 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGqrQRvaIA 238 (352)
+||||++.+|+ .||+||+.+++. ..... +++.++++.+++.++.++. +.+|||||||||+||
T Consensus 79 ~~v~q~~~l~~-~tv~enl~~~~~--~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lA 151 (243)
T 1mv5_A 79 GFVSQDSAIMA-GTIRENLTYGLE--GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (243)
T ss_dssp CEECCSSCCCC-EEHHHHTTSCTT--SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEEcCCCcccc-ccHHHHHhhhcc--CCCCH----HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHH
Confidence 99999999987 599999988531 11222 3467788888887766554 579999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||++ +|++|||||||+|||+.++..+++.|+++. +| .|||+||||++.+. .||||++|++
T Consensus 152 ral~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~----------~tvi~vtH~~~~~~-~~d~v~~l~~ 212 (243)
T 1mv5_A 152 RAFLR-------NPKILMLDEATASLDSESESMVQKALDSLM-KG----------RTTLVIAHRLSTIV-DADKIYFIEK 212 (243)
T ss_dssp HHHHH-------CCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TT----------SEEEEECCSHHHHH-HCSEEEEEET
T ss_pred HHHhc-------CCCEEEEECCcccCCHHHHHHHHHHHHHhc-CC----------CEEEEEeCChHHHH-hCCEEEEEEC
Confidence 99997 599999999999999999999999999997 55 59999999999886 5999999999
Q ss_pred CeEEEeecccccccCCcHHHHHHhc
Q 018638 319 GKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 319 G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
|++++.|+++++... .....+++.
T Consensus 213 G~i~~~g~~~~~~~~-~~~~~~~~~ 236 (243)
T 1mv5_A 213 GQITGSGKHNELVAT-HPLYAKYVS 236 (243)
T ss_dssp TEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred CEEEEeCCHHHHHhc-cHHHHHHHH
Confidence 999999988887543 234455554
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-54 Score=396.04 Aligned_cols=202 Identities=21% Similarity=0.336 Sum_probs=178.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|+++||+++|++ .+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++. . .+.+|
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~--~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----K--VKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----G--GGGGE
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----h--hcCcE
Confidence 57999999999998 9999999999999999999999999999999999999999999999999863 1 13369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+||||++.+|+.+||+||+.++...+. .. .+ .+++.++++.+|+++. ++++.+|||||||||+|||||+.
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~-~~-~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~------ 150 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYG-VK-VN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLV------ 150 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTT-CC-CC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTS------
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcC-Cc-hH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHh------
Confidence 999999999999999999998753322 11 11 3567889999999988 99999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||++||+.++..++++|++++++| .|||++|||++++..+||+|+++ +|+|
T Consensus 151 -~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g----------~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 151 -NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK----------GIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp -CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH----------SEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred -CCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 699999999999999999999999999997665 59999999999999999997754 5665
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=402.09 Aligned_cols=219 Identities=26% Similarity=0.467 Sum_probs=183.8
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 90 ~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++| +|+|+++|+++... ..... +
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~-~~~~~-~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKY-NRNSI-R 92 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGB-CHHHH-H
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhc-CHHHH-h
Confidence 46999999999976 4699999999999999999999999999999999999987 89999999987532 22222 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-----------cccCCCCCChHHHHHH
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-----------EDRLPSELSGGMKKRV 235 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~~~~LSGGqrQRv 235 (352)
.+|+||||++.+|+ .||+||+.++.. .... +++.++++.+++.++ .++++.+|||||||||
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~---~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 93 SIIGIVPQDTILFN-ETIKYNILYGKL---DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp TTEEEECSSCCCCS-EEHHHHHHTTCT---TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred ccEEEEcCCCcccc-cCHHHHHhccCC---CCCH----HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 46999999999987 699999988531 1222 335667777777543 2467889999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
+|||||+. +|++|||||||++||+.++..++++|+++.+ + .|||+||||++.+. .||||++
T Consensus 165 ~lAraL~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~----------~tviivtH~~~~~~-~~d~i~~ 225 (260)
T 2ghi_A 165 AIARCLLK-------DPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-N----------RTLIIIAHRLSTIS-SAESIIL 225 (260)
T ss_dssp HHHHHHHH-------CCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-T----------SEEEEECSSGGGST-TCSEEEE
T ss_pred HHHHHHHc-------CCCEEEEECccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEcCCHHHHH-hCCEEEE
Confidence 99999997 5999999999999999999999999999854 4 59999999999986 4999999
Q ss_pred EeCCeEEEeecccccccCCcHHH
Q 018638 316 LYEGKIVWQGMTHEFTSSSNPIV 338 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~~~~~~~~ 338 (352)
|++|++++.|+++++......+.
T Consensus 226 l~~G~i~~~g~~~~l~~~~~~~~ 248 (260)
T 2ghi_A 226 LNKGKIVEKGTHKDLLKLNGEYA 248 (260)
T ss_dssp EETTEEEEEECHHHHHHHTSHHH
T ss_pred EECCEEEEECCHHHHHhcChHHH
Confidence 99999999998888764434443
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-53 Score=436.97 Aligned_cols=276 Identities=22% Similarity=0.353 Sum_probs=221.9
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+....+.+...+..++.++..++... ........+.+|+......|+.... . . . +
T Consensus 280 t~g~l~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~-~--------~---------~--~ 334 (582)
T 3b5x_A 280 TPGTFTVVFSAMFGLMRPLKALTSVT-----SEFQRGMAACQTLFGLMDLETERDN-G--------K---------Y--E 334 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcCCC-C--------C---------C--C
Confidence 34555566666667778887777666 6677788888998888776542110 0 0 0 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
......+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..
T Consensus 335 ~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-~~ 413 (582)
T 3b5x_A 335 AERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK-LT 413 (582)
T ss_pred CCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC-HH
Confidence 0111235999999999974 67999999999999999999999999999999999999999999999999976532 22
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGq 231 (352)
.. +.+||||||++.+|+ .||+|||.++.. ...+ ++++.++++.++++++.++.| .+|||||
T Consensus 414 ~~-~~~i~~v~Q~~~l~~-~tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 414 NL-RRHFALVSQNVHLFN-DTIANNIAYAAE--GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred HH-hcCeEEEcCCCcccc-ccHHHHHhccCC--CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 22 346999999999998 599999998531 1122 244677888888877666654 7999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|||++|||||++ +|++|||||||++||+.++..+.+.|+++.+ | +|+|+||||++.+. .||
T Consensus 486 ~qr~~iAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~~~~~~-~~d 546 (582)
T 3b5x_A 486 RQRVAIARALLR-------DAPVLILDEATSALDTESERAIQAALDELQK-N----------KTVLVIAHRLSTIE-QAD 546 (582)
T ss_pred HHHHHHHHHHHc-------CCCEEEEECccccCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHH-hCC
Confidence 999999999997 5999999999999999999999999999864 5 59999999999987 599
Q ss_pred EEEEEeCCeEEEeecccccccC
Q 018638 312 RLIFLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~~~~ 333 (352)
||++|++|++++.|+++++...
T Consensus 547 ~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 547 EILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred EEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999988887654
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-53 Score=402.04 Aligned_cols=207 Identities=25% Similarity=0.372 Sum_probs=184.5
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
||+++||+++|++ +.+|+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. +
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~----~~-~ 73 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI----RN-Y 73 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC----SC-C
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch----HH-h
Confidence 5899999999987 789999999999 9999999999999999999999999 9999999999987432 11 3
Q ss_pred ceEE-EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 167 LRIG-LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 167 ~~ig-~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
++|+ ||||++.+ .+||+||+.++.... ... .+++.++++.+||. +..++++.+|||||||||+|||||+.
T Consensus 74 ~~i~~~v~Q~~~l--~~tv~enl~~~~~~~-~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~- 145 (263)
T 2pjz_A 74 IRYSTNLPEAYEI--GVTVNDIVYLYEELK-GLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS- 145 (263)
T ss_dssp TTEEECCGGGSCT--TSBHHHHHHHHHHHT-CCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT-
T ss_pred hheEEEeCCCCcc--CCcHHHHHHHhhhhc-chH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh-
Confidence 4699 99999987 689999999865322 122 34578899999999 99999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC-EEEEEeCCeEEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD-RLIFLYEGKIVW 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD-rv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.++..++++|++++ .|||+||||++++..+|| |+++|++|++++
T Consensus 146 ------~p~lllLDEPts~LD~~~~~~l~~~L~~~~-------------~tviivtHd~~~~~~~~d~~i~~l~~G~i~~ 206 (263)
T 2pjz_A 146 ------QPEIVGLDEPFENVDAARRHVISRYIKEYG-------------KEGILVTHELDMLNLYKEYKAYFLVGNRLQG 206 (263)
T ss_dssp ------CCSEEEEECTTTTCCHHHHHHHHHHHHHSC-------------SEEEEEESCGGGGGGCTTSEEEEEETTEEEE
T ss_pred ------CCCEEEEECCccccCHHHHHHHHHHHHHhc-------------CcEEEEEcCHHHHHHhcCceEEEEECCEEEE
Confidence 699999999999999999999999998763 289999999999999999 999999999999
Q ss_pred eecccccc
Q 018638 324 QGMTHEFT 331 (352)
Q Consensus 324 ~g~~~~~~ 331 (352)
.|+++++.
T Consensus 207 ~g~~~~l~ 214 (263)
T 2pjz_A 207 PISVSELL 214 (263)
T ss_dssp EEEHHHHH
T ss_pred ecCHHHHH
Confidence 99888764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-53 Score=436.76 Aligned_cols=275 Identities=22% Similarity=0.346 Sum_probs=221.0
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+....+.+...+..++.++..+.... ........+.+|+......|+.... . . . +
T Consensus 280 t~g~l~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~-~--------~---------~--~ 334 (582)
T 3b60_A 280 TAGTITVVFSSMIALMRPLKSLTNVN-----AQFQRGMAACQTLFAILDSEQEKDE-G--------K---------R--V 334 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHSCCSCCC-C--------C---------B--C
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCccC-C--------C---------C--C
Confidence 33455566666667778887777666 6677788888999888877643210 0 0 0 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
......+|+++||+++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..
T Consensus 335 ~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~-~~ 413 (582)
T 3b60_A 335 IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT-LA 413 (582)
T ss_dssp CSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC-HH
T ss_pred CCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC-HH
Confidence 0111235999999999973 67999999999999999999999999999999999999999999999999986532 22
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGM 231 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGq 231 (352)
.. +.+||||||++.+|+ .||+|||.++.. ...+. +++.++++.++++++.++. +.+|||||
T Consensus 414 ~~-~~~i~~v~Q~~~l~~-~tv~eni~~~~~--~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 414 SL-RNQVALVSQNVHLFN-DTVANNIAYART--EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp HH-HHTEEEECSSCCCCS-SBHHHHHHTTTT--SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred HH-HhhCeEEccCCcCCC-CCHHHHHhccCC--CCCCH----HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 22 336999999999998 499999998641 11222 3467788888887665554 48999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|||++|||||++ +|++|||||||++||+.++..+.+.|+++.+ | +|+|+||||++.+. .||
T Consensus 486 ~qrl~iAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~~~~~~-~~d 546 (582)
T 3b60_A 486 RQRIAIARALLR-------DSPILILDEATSALDTESERAIQAALDELQK-N----------RTSLVIAHRLSTIE-QAD 546 (582)
T ss_dssp HHHHHHHHHHHH-------CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-T----------SEEEEECSCGGGTT-TCS
T ss_pred HHHHHHHHHHHh-------CCCEEEEECccccCCHHHHHHHHHHHHHHhC-C----------CEEEEEeccHHHHH-hCC
Confidence 999999999998 5999999999999999999999999999865 5 59999999999986 599
Q ss_pred EEEEEeCCeEEEeeccccccc
Q 018638 312 RLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~~~ 332 (352)
||++|++|++++.|+++++..
T Consensus 547 ~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 547 EIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEECCEEEEecCHHHHHH
Confidence 999999999999998888764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-53 Score=436.85 Aligned_cols=283 Identities=25% Similarity=0.357 Sum_probs=218.8
Q ss_pred cchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q 018638 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (352)
.....+...+..++.++..+.... ........+.+|+.+....|+........ .+.+
T Consensus 278 g~l~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~------------------~~~~ 334 (578)
T 4a82_A 278 GTLAAFVGYLELLFGPLRRLVASF-----TTLTQSFASMDRVFQLIDEDYDIKNGVGA------------------QPIE 334 (578)
T ss_dssp HHHHHHHHTHHHHTTHHHHHHHHH-----HHHHHHHHHHHHHHHHHTCCCSSCCCTTC------------------CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccCCCCc------------------cccC
Confidence 344444444555566666655555 56667778888998888776432111000 0001
Q ss_pred CCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhh
Q 018638 87 DGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.....|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ....
T Consensus 335 ~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-~~~~ 413 (578)
T 4a82_A 335 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL-TGSL 413 (578)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC-HHHH
T ss_pred CCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-HHHH
Confidence 11234999999999964 57999999999999999999999999999999999999999999999999986542 2222
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKK 233 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQ 233 (352)
+.+||||||++.+|+. ||+|||.++.. .... +++.++++.+++.++.++.| .+|||||||
T Consensus 414 -r~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 414 -RNQIGLVQQDNILFSD-TVKENILLGRP---TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp -HHTEEEECSSCCCCSS-BHHHHHGGGCS---SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred -hhheEEEeCCCccCcc-cHHHHHhcCCC---CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence 3369999999999985 99999988531 1222 34566777777766555554 689999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
||+|||||++ +|++|||||||++||+.++..+.+.++++.+ + .|+|+||||++.+.. ||||
T Consensus 485 rv~lAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~t~i~itH~l~~~~~-~d~i 545 (578)
T 4a82_A 485 RLSIARIFLN-------NPPILILDEATSALDLESESIIQEALDVLSK-D----------RTTLIVAHRLSTITH-ADKI 545 (578)
T ss_dssp HHHHHHHHHH-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-T----------SEEEEECSSGGGTTT-CSEE
T ss_pred HHHHHHHHHc-------CCCEEEEECccccCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHHc-CCEE
Confidence 9999999998 5999999999999999999999999998854 3 499999999999865 8999
Q ss_pred EEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 314 IFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
++|++|+|+++|+++|+...... ..+++
T Consensus 546 ~~l~~G~i~~~g~~~el~~~~~~-~~~~~ 573 (578)
T 4a82_A 546 VVIENGHIVETGTHRELIAKQGA-YEHLY 573 (578)
T ss_dssp EEEETTEEEEEECHHHHHHTTSH-HHHHH
T ss_pred EEEECCEEEEECCHHHHHhCCcH-HHHHH
Confidence 99999999999998888754433 34443
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-54 Score=425.00 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=194.0
Q ss_pred ceEEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y--~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..|+++||+|+| +++.+|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|+|+|+++.... .... ++
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~-~~~~-rr 94 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT-LEQW-RK 94 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSC-HHHH-HH
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCC-hHHH-hC
Confidence 359999999999 66789999999999999999999999999999999999998 9999999999986542 2222 23
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCC-----------CChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-----------LSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~-----------LSGGqrQRva 236 (352)
+||||||++.+|+ +||+||+.+.. ... .+++.++++.++|.++.+++|.+ |||||||||+
T Consensus 95 ~ig~v~Q~~~lf~-~tv~enl~~~~----~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRva 165 (390)
T 3gd7_A 95 AFGVIPQKVFIFS-GTFRKNLDPNA----AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC 165 (390)
T ss_dssp TEEEESCCCCCCS-EEHHHHHCTTC----CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHH
T ss_pred CEEEEcCCcccCc-cCHHHHhhhcc----ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHH
Confidence 6999999999998 69999997421 122 24577899999999999999998 9999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||++||+..+..+++.|+++.+ + .|+|+||||++.+ ..||||++|
T Consensus 166 lARAL~~-------~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~-~----------~tvi~vtHd~e~~-~~aDri~vl 226 (390)
T 3gd7_A 166 LARSVLS-------KAKILLLDEPSAHLDPVTYQIIRRTLKQAFA-D----------CTVILCEARIEAM-LECDQFLVI 226 (390)
T ss_dssp HHHHHHT-------TCCEEEEESHHHHSCHHHHHHHHHHHHTTTT-T----------SCEEEECSSSGGG-TTCSEEEEE
T ss_pred HHHHHhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEEcCHHHH-HhCCEEEEE
Confidence 9999997 6999999999999999999999999988643 3 5999999998765 469999999
Q ss_pred eCCeEEEeecccccc-cCCcHHHHHHhc
Q 018638 317 YEGKIVWQGMTHEFT-SSSNPIVQQFAS 343 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~-~~~~~~~~~~~~ 343 (352)
++|+|++.|++++++ .+.+.++..|+.
T Consensus 227 ~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 227 EENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp ETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred ECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 999999999999976 456788888874
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=387.50 Aligned_cols=201 Identities=24% Similarity=0.410 Sum_probs=170.6
Q ss_pred ceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.+|+++||+++|+ ++++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 4799999999995 57899999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccc-----------ccCCCCCChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSGGqrQRva 236 (352)
+|+|+||++.+|+. ||+||+.++.. .... .+.++++.+++.+.. ++.+.+|||||||||+
T Consensus 70 ~i~~v~q~~~~~~~-tv~enl~~~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~ 140 (229)
T 2pze_A 70 RISFCSQFSWIMPG-TIKENIIFGVS----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140 (229)
T ss_dssp CEEEECSSCCCCSB-CHHHHHHTTSC----CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHH
T ss_pred EEEEEecCCcccCC-CHHHHhhccCC----cChH----HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHH
Confidence 38999999999985 99999988531 1111 133445555554433 3345899999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL-IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~l-l~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
|||||++ +|++|||||||++||+.++..+++. +.++. ++ .|||+||||++++. .|||+++
T Consensus 141 lAral~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~----------~tvi~vtH~~~~~~-~~d~v~~ 201 (229)
T 2pze_A 141 LARAVYK-------DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-AN----------KTRILVTSKMEHLK-KADKILI 201 (229)
T ss_dssp HHHHHHS-------CCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TT----------SEEEEECCCHHHHH-HCSEEEE
T ss_pred HHHHHhc-------CCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CC----------CEEEEEcCChHHHH-hCCEEEE
Confidence 9999997 6999999999999999999999986 45553 34 59999999999986 4999999
Q ss_pred EeCCeEEEeecccccccC
Q 018638 316 LYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~~~ 333 (352)
|++|++++.|+++++...
T Consensus 202 l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 202 LHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EETTEEEEEECHHHHHTC
T ss_pred EECCEEEEECCHHHHHhc
Confidence 999999999988887643
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-52 Score=434.90 Aligned_cols=271 Identities=24% Similarity=0.385 Sum_probs=208.1
Q ss_pred HHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcc
Q 018638 11 LFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDV 90 (352)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (352)
.+......++.++..++... ........+.+|+......|+........ . .......
T Consensus 284 ~~~~~~~~~~~~l~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~----------------~--~~~~~~~ 340 (587)
T 3qf4_A 284 AYTNYLMQIMFSLMMIGNIL-----NFIVRASASAKRVLEVLNEKPAIEEADNA----------------L--ALPNVEG 340 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCSCCCCTTC----------------B--CCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCccCCCCCc----------------c--ccCCCCC
Confidence 33333444455555544444 45556677888888887766422111100 0 0011123
Q ss_pred eEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~-~~~~-r~~ 418 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK-LKDL-RGH 418 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC-HHHH-HHH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC-HHHH-Hhh
Confidence 499999999995 467999999999999999999999999999999999999999999999999986542 2222 336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-----------CcccccCCCCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-----------KGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL-----------~~~~~~~~~~LSGGqrQRvaI 237 (352)
|+||||++.+|+. ||+|||.++.. ....++ +.++++.+++ +...++.+.+||||||||++|
T Consensus 419 i~~v~Q~~~lf~~-tv~eni~~~~~---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 419 ISAVPQETVLFSG-TIKENLKWGRE---DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp EEEECSSCCCCSE-EHHHHHTTTCS---SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred eEEECCCCcCcCc-cHHHHHhccCC---CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 9999999999975 99999987531 122322 3344444444 445567788999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||++ +|++|||||||++||+.++..+++.|+++.+ | +|+|+||||++.+. .||||++|+
T Consensus 491 ARal~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~l~~~~-~~d~i~vl~ 551 (587)
T 3qf4_A 491 ARALVK-------KPKVLILDDCTSSVDPITEKRILDGLKRYTK-G----------CTTFIITQKIPTAL-LADKILVLH 551 (587)
T ss_dssp HHHHHT-------CCSEEEEESCCTTSCHHHHHHHHHHHHHHST-T----------CEEEEEESCHHHHT-TSSEEEEEE
T ss_pred HHHHHc-------CCCEEEEECCcccCCHHHHHHHHHHHHHhCC-C----------CEEEEEecChHHHH-hCCEEEEEE
Confidence 999997 5999999999999999999999999998743 4 59999999999986 799999999
Q ss_pred CCeEEEeecccccccC
Q 018638 318 EGKIVWQGMTHEFTSS 333 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~ 333 (352)
+|+|++.|+++|+...
T Consensus 552 ~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 552 EGKVAGFGTHKELLEH 567 (587)
T ss_dssp TTEEEEEECHHHHHHH
T ss_pred CCEEEEECCHHHHHhC
Confidence 9999999988887654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-53 Score=438.87 Aligned_cols=262 Identities=24% Similarity=0.433 Sum_probs=209.1
Q ss_pred hhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEE
Q 018638 20 SSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYK 99 (352)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~ 99 (352)
+.++..+.... ........+.+|+......|+....... . +.......|+++||+|
T Consensus 307 ~~~l~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~-----------------~--~~~~~~~~i~~~~v~~ 362 (598)
T 3qf4_B 307 TRPLNELSNQF-----NMIQMALASAERIFEILDLEEEKDDPDA-----------------V--ELREVRGEIEFKNVWF 362 (598)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTSCCCCCCSSC-----------------C--CCCSCCCCEEEEEEEC
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCCCCCC-----------------C--CCCCCCCeEEEEEEEE
Confidence 44554444443 4555667788888888877653211000 0 0011112499999999
Q ss_pred EeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 100 SFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 100 ~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... .... +.+||||||++.+
T Consensus 363 ~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~-~~~~-r~~i~~v~Q~~~l 440 (598)
T 3qf4_B 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK-RSSL-RSSIGIVLQDTIL 440 (598)
T ss_dssp CSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC-HHHH-HHHEEEECTTCCC
T ss_pred ECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC-HHHH-HhceEEEeCCCcc
Confidence 9964 67999999999999999999999999999999999999999999999999986543 2222 3369999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHhccCCC
Q 018638 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
|+ .||+|||.++.. ..+. +++.++++.++++++.++.| .+|||||||||+|||||++
T Consensus 441 f~-~tv~eni~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~---- 508 (598)
T 3qf4_B 441 FS-TTVKENLKYGNP---GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA---- 508 (598)
T ss_dssp CS-SBHHHHHHSSST---TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT----
T ss_pred cc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc----
Confidence 97 599999988531 1222 23567788888877777776 6999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+.++..+.+.|+++. +| +|+|+||||++.+.. ||||++|++|+|++.|++
T Consensus 509 ---~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~----------~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 573 (598)
T 3qf4_B 509 ---NPKILILDEATSNVDTKTEKSIQAAMWKLM-EG----------KTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKH 573 (598)
T ss_dssp ---CCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TT----------SEEEEESCCTTHHHH-CSEEEEECSSSEEECSCH
T ss_pred ---CCCEEEEECCccCCCHHHHHHHHHHHHHHc-CC----------CEEEEEecCHHHHHc-CCEEEEEECCEEEEECCH
Confidence 599999999999999999999999999986 34 599999999999876 899999999999999988
Q ss_pred cccccCC
Q 018638 328 HEFTSSS 334 (352)
Q Consensus 328 ~~~~~~~ 334 (352)
+++....
T Consensus 574 ~~l~~~~ 580 (598)
T 3qf4_B 574 DELIQKR 580 (598)
T ss_dssp HHHHHTT
T ss_pred HHHHhCC
Confidence 8876543
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-52 Score=385.90 Aligned_cols=207 Identities=27% Similarity=0.403 Sum_probs=171.3
Q ss_pred eEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+|+++||+++|+ ++.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------------~ 67 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------------S 67 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---------------C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---------------E
Confidence 599999999997 57899999999999999999999999999999999999999999999988 2
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHH---HHHHcCCC-----cccccCCCCCChHHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE---NLAAVGLK-----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~---~l~~~gL~-----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
||||||++.++ .+||+||+.++.. ...+.. +++.+ +++.+++. ...++++.+|||||||||+||||
T Consensus 68 i~~v~Q~~~~~-~~tv~enl~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 68 VAYVPQQAWIQ-NDSLRENILFGCQ----LEEPYY-RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp EEEECSSCCCC-SEEHHHHHHTTSC----CCTTHH-HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEEcCCCcCC-CcCHHHHhhCccc----cCHHHH-HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 89999998765 6899999988542 111111 11211 12233321 23578899999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR---SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~---~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
|+. +|++|||||||++||+.++..+++.|. ++. +| .|||+||||++.+. .||||++|+
T Consensus 142 L~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~----------~tviivtH~~~~~~-~~d~v~~l~ 202 (237)
T 2cbz_A 142 VYS-------NADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KN----------KTRILVTHSMSYLP-QVDVIIVMS 202 (237)
T ss_dssp HHH-------CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TT----------SEEEEECSCSTTGG-GSSEEEEEE
T ss_pred Hhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CC----------CEEEEEecChHHHH-hCCEEEEEe
Confidence 997 599999999999999999999999985 343 34 59999999999875 699999999
Q ss_pred CCeEEEeecccccccCCcHH
Q 018638 318 EGKIVWQGMTHEFTSSSNPI 337 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~~~~~ 337 (352)
+|++++.|+++++......+
T Consensus 203 ~G~i~~~g~~~~~~~~~~~~ 222 (237)
T 2cbz_A 203 GGKISEMGSYQELLARDGAF 222 (237)
T ss_dssp TTEEEEEECHHHHHHHTSHH
T ss_pred CCEEEEeCCHHHHhhccHHH
Confidence 99999999888876444433
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=453.14 Aligned_cols=216 Identities=30% Similarity=0.522 Sum_probs=188.0
Q ss_pred EEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 92 IDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 92 l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
|+++||+++|++ .++|+||||+|++||.+|||||||||||||+++|.|+++|++|+|++||.|+..+. ..+. |.+
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~-~~~l-R~~ 1154 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLN-PEHT-RSQ 1154 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBC-HHHH-HTT
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCC-HHHH-Hhh
Confidence 999999999964 36999999999999999999999999999999999999999999999999998753 3333 347
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaI 237 (352)
|+||||+|.||+ .||+|||.|++.. ...+ ++++.++++.++++++....| .+||||||||++|
T Consensus 1155 i~~V~Qdp~LF~-gTIreNI~~gld~-~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriai 1228 (1321)
T 4f4c_A 1155 IAIVSQEPTLFD-CSIAENIIYGLDP-SSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAI 1228 (1321)
T ss_dssp EEEECSSCCCCS-EEHHHHHSSSSCT-TTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHH
T ss_pred eEEECCCCEeeC-ccHHHHHhccCCC-CCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHH
Confidence 999999999998 4999999987522 1122 345788899999877766554 5799999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||++ +|+|||||||||+||+++++.+++.|+++.++ +|+|+|+|+++++.. ||||+||+
T Consensus 1229 ARAllr-------~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~-----------~TvI~IAHRLsTi~~-aD~I~Vld 1289 (1321)
T 4f4c_A 1229 ARALVR-------NPKILLLDEATSALDTESEKVVQEALDRAREG-----------RTCIVIAHRLNTVMN-ADCIAVVS 1289 (1321)
T ss_dssp HHHHHS-------CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSS-----------SEEEEECSSSSTTTT-CSEEEEES
T ss_pred HHHHHh-------CCCEEEEeCccccCCHHHHHHHHHHHHHHcCC-----------CEEEEeccCHHHHHh-CCEEEEEE
Confidence 999997 59999999999999999999999999886543 599999999999987 69999999
Q ss_pred CCeEEEeecccccccCC
Q 018638 318 EGKIVWQGMTHEFTSSS 334 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~~ 334 (352)
+|+|++.|+++|++...
T Consensus 1290 ~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp SSSEEEEECHHHHHHCC
T ss_pred CCEEEEECCHHHHHhCC
Confidence 99999999998887543
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-49 Score=439.91 Aligned_cols=276 Identities=24% Similarity=0.315 Sum_probs=216.8
Q ss_pred chhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 018638 8 GSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDD 87 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (352)
..+.++.....++.++..++... ........+.+|+......++........ . ..+..
T Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~---------------~--~~~~~ 411 (1321)
T 4f4c_A 354 DMLTTFSSVMMGSMALGLAGPQL-----AVLGTAQGAASGIYEVLDRKPVIDSSSKA---------------G--RKDMK 411 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTTSCCSSCSSSC---------------C--CCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCccccccccc---------------c--ccCCC
Confidence 33344444444556665555444 55667778888998888765422111100 0 01111
Q ss_pred CcceEEEEeEEEEeC---CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhh
Q 018638 88 GDVLIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 88 ~~~~l~~~nls~~y~---~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
....|+++||+|+|+ ++++|+||||+|++|+.+|||||||||||||+++|.|+++|++|+|.+||+++..+. ..+.
T Consensus 412 ~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~-~~~l 490 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDIN-LEFL 490 (1321)
T ss_dssp CCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSC-HHHH
T ss_pred CCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhcc-HHHH
Confidence 112399999999996 357999999999999999999999999999999999999999999999999998753 3333
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKK 233 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQ 233 (352)
+.+||||+|+|.+|+ .||+|||.|+.. ..+ ++++.++++.++++++.++.| ..|||||||
T Consensus 491 -r~~i~~v~Q~~~Lf~-~TI~eNI~~g~~---~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 561 (1321)
T 4f4c_A 491 -RKNVAVVSQEPALFN-CTIEENISLGKE---GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQ 561 (1321)
T ss_dssp -HHHEEEECSSCCCCS-EEHHHHHHTTCT---TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHH
T ss_pred -hhcccccCCcceeeC-CchhHHHhhhcc---cch----HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHH
Confidence 336999999999997 599999998641 123 345778888888877666655 589999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
|++||||+++ +|+|||||||||+||++++..+.+.|.++.+. +|+|+|||+++.+.. ||+|
T Consensus 562 RiaiARAl~~-------~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~-----------~T~iiiaHrls~i~~-aD~I 622 (1321)
T 4f4c_A 562 RIAIARALVR-------NPKILLLDEATSALDAESEGIVQQALDKAAKG-----------RTTIIIAHRLSTIRN-ADLI 622 (1321)
T ss_dssp HHHHHHHHTT-------CCSEEEEESTTTTSCTTTHHHHHHHHHHHHTT-----------SEEEEECSCTTTTTT-CSEE
T ss_pred HHHHHHHHcc-------CCCEEEEecccccCCHHHHHHHHHHHHHHhCC-----------CEEEEEcccHHHHHh-CCEE
Confidence 9999999997 59999999999999999999999999998653 499999999999875 7999
Q ss_pred EEEeCCeEEEeecccccccCC
Q 018638 314 IFLYEGKIVWQGMTHEFTSSS 334 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~~~~~ 334 (352)
++|++|+|++.|+.+|+....
T Consensus 623 ivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 623 ISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp EEEETTEEEEEECHHHHHTTT
T ss_pred EEeeCCeeeccCCHHHHHHhh
Confidence 999999999999877776543
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=377.46 Aligned_cols=197 Identities=23% Similarity=0.392 Sum_probs=155.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|+++||++.+ +.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++| +|
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------------RI 101 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---------------CE
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---------------EE
Confidence 469999999864 6799999999999999999999999999999999999999999999987 38
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc-----------cCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-----------RLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSGGqrQRvaIA 238 (352)
+||||++.+|+. ||+||+. +.. .... .+.++++.+++.+..+ +.+.+|||||||||+||
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GVS----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TTC----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Ccc----cchH----HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 999999999884 9999997 431 1211 2334555666644333 34589999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll-~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
|||+. +|++|||||||+|||+.++..+++.+ +++. +| .|||+||||++.+. .|||+++|+
T Consensus 172 raL~~-------~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~----------~tviivtHd~~~~~-~~d~i~~l~ 232 (290)
T 2bbs_A 172 RAVYK-------DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-AN----------KTRILVTSKMEHLK-KADKILILH 232 (290)
T ss_dssp HHHHS-------CCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TT----------SEEEEECCCHHHHH-HSSEEEEEE
T ss_pred HHHHC-------CCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CC----------CEEEEEecCHHHHH-cCCEEEEEE
Confidence 99997 69999999999999999999999864 4553 34 59999999999986 599999999
Q ss_pred CCeEEEeeccccccc
Q 018638 318 EGKIVWQGMTHEFTS 332 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~ 332 (352)
+|++++.|+++++..
T Consensus 233 ~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 233 EGSSYFYGTFSELQN 247 (290)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCeEEEeCCHHHHhh
Confidence 999999998888753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-48 Score=430.17 Aligned_cols=215 Identities=29% Similarity=0.475 Sum_probs=181.9
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 91 LIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..+. +.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~-~~~~-r~ 464 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN-VRYL-RE 464 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC-HHHH-HH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC-HHHH-Hh
Confidence 3999999999974 46999999999999999999999999999999999999999999999999987643 3333 33
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-----------cccCCCCCChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-----------EDRLPSELSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~~~~LSGGqrQRva 236 (352)
+||||||++.+|+. ||+|||.++.. ..+.++ +.++++.+++.++ ..+...+|||||||||+
T Consensus 465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qria 536 (1284)
T 3g5u_A 465 IIGVVSQEPVLFAT-TIAENIRYGRE---DVTMDE----IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIA 536 (1284)
T ss_dssp HEEEECSSCCCCSS-CHHHHHHHHCS---SCCHHH----HHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHH
T ss_pred heEEEcCCCccCCc-cHHHHHhcCCC---CCCHHH----HHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHH
Confidence 69999999999985 99999998642 123333 4455555555433 34455699999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||++ +|+|||||||||+||+.++..+.+.++++.+ | +|+|+|||+++++.. ||||++|
T Consensus 537 iARal~~-------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~----------~t~i~itH~l~~i~~-~d~i~vl 597 (1284)
T 3g5u_A 537 IARALVR-------NPKILLLDEATSALDTESEAVVQAALDKARE-G----------RTTIVIAHRLSTVRN-ADVIAGF 597 (1284)
T ss_dssp HHHHHHH-------CCSEEEEESTTCSSCHHHHHHHHHHHHHHHT-T----------SEEEEECSCHHHHTT-CSEEEEC
T ss_pred HHHHHhc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHHc-CCEEEEE
Confidence 9999998 5999999999999999999999999988754 4 599999999999976 8999999
Q ss_pred eCCeEEEeecccccccCC
Q 018638 317 YEGKIVWQGMTHEFTSSS 334 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~~~ 334 (352)
++|+|++.|+++++....
T Consensus 598 ~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 598 DGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp SSSCCCCEECHHHHHHTT
T ss_pred ECCEEEEECCHHHHHhCC
Confidence 999999999888876543
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=428.76 Aligned_cols=219 Identities=26% Similarity=0.520 Sum_probs=185.0
Q ss_pred eEEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 91 LIDCRNVYKSFGEK---HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~~---~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.|+++||+++|+++ ++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... .... +.
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~-r~ 1107 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN-VQWL-RA 1107 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSC-HHHH-TT
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCC-HHHH-Hh
Confidence 49999999999753 6999999999999999999999999999999999999999999999999987543 3333 44
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRva 236 (352)
+|+||||++.+|+ .||+|||.++.. ....+.+ .+.++++.+++.++.++.| .+|||||||||+
T Consensus 1108 ~i~~v~Q~~~l~~-~ti~eNi~~~~~-~~~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~ 1181 (1284)
T 3g5u_A 1108 QLGIVSQEPILFD-CSIAENIAYGDN-SRVVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181 (1284)
T ss_dssp SCEEEESSCCCCS-SBHHHHHTCCCS-SCCCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHH
T ss_pred ceEEECCCCcccc-ccHHHHHhccCC-CCCCCHH----HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHH
Confidence 7999999999886 699999988542 1112332 3556677777766655554 689999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||++ +|+||||||||++||+.++..+++.|+++. +| +|+|+||||++++.. ||||++|
T Consensus 1182 iARal~~-------~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~----------~tvi~isH~l~~i~~-~dri~vl 1242 (1284)
T 3g5u_A 1182 IARALVR-------QPHILLLDEATSALDTESEKVVQEALDKAR-EG----------RTCIVIAHRLSTIQN-ADLIVVI 1242 (1284)
T ss_dssp HHHHHHH-------CCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SS----------SCEEEECSCTTGGGS-CSEEEEE
T ss_pred HHHHHHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CC----------CEEEEEecCHHHHHc-CCEEEEE
Confidence 9999998 599999999999999999999999998853 34 599999999999865 9999999
Q ss_pred eCCeEEEeecccccccCCcH
Q 018638 317 YEGKIVWQGMTHEFTSSSNP 336 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~~~~~ 336 (352)
++|+|++.|+++++......
T Consensus 1243 ~~G~i~~~g~~~~l~~~~g~ 1262 (1284)
T 3g5u_A 1243 QNGKVKEHGTHQQLLAQKGI 1262 (1284)
T ss_dssp ETBEEEEEECHHHHHHSCSH
T ss_pred ECCEEEEECCHHHHHhCCCH
Confidence 99999999998888755433
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=379.87 Aligned_cols=207 Identities=28% Similarity=0.367 Sum_probs=181.5
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+.++++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. .
T Consensus 284 ~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~---------------~ 347 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD---------------L 347 (538)
T ss_dssp CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC---------------C
T ss_pred CCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC---------------c
Confidence 35689999999999875 6999999999999999999999999999999999999999999751 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|||+||++.+++.+||.|++....... .. ..+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~--~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~---- 418 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASK--LN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLR---- 418 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH--HT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTS----
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccC--CC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh----
Confidence 5999999998777789999886531111 01 12457789999999989999999999999999999999996
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC--CeEEEe
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE--GKIVWQ 324 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~--G~iv~~ 324 (352)
+|++|||||||+|||+.++..++++|+++.+ .| .|||+||||++++..+||||++|++ |+++..
T Consensus 419 ---~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~ 485 (538)
T 1yqt_A 419 ---DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE----------KTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRA 485 (538)
T ss_dssp ---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT----------CEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEeCCcceEeec
Confidence 6999999999999999999999999999974 45 5999999999999999999999986 788889
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 486 g~~~~~~~ 493 (538)
T 1yqt_A 486 LPPMGMRE 493 (538)
T ss_dssp CCCEEHHH
T ss_pred CCHHHHHh
Confidence 99888753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=383.13 Aligned_cols=207 Identities=29% Similarity=0.374 Sum_probs=182.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..++++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. .
T Consensus 354 ~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---------------~ 417 (607)
T 3bk7_A 354 RETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------------L 417 (607)
T ss_dssp CCEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC---------------C
T ss_pred CceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe---------------e
Confidence 35789999999999875 6999999999999999999999999999999999999999999761 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|||+||++.+++.+||.|++.+..... . ...+++.++++.+|+.+..++++.+|||||||||+|||||++
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~---- 488 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSK--L---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR---- 488 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH--H---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTS----
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccC--C---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh----
Confidence 5999999988777799999887641110 0 113457889999999999999999999999999999999996
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC--CeEEEe
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE--GKIVWQ 324 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~--G~iv~~ 324 (352)
+|++|||||||+|||+.++..++++|+++.+ +| .|||+||||++++..+||||++|++ |+++..
T Consensus 489 ---~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~ 555 (607)
T 3bk7_A 489 ---DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE----------KTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRA 555 (607)
T ss_dssp ---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred ---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEcCCcceEEec
Confidence 6999999999999999999999999999975 35 5999999999999999999999986 888889
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 556 g~p~~~~~ 563 (607)
T 3bk7_A 556 LPPMGMRE 563 (607)
T ss_dssp CCCEEHHH
T ss_pred CCHHHHHh
Confidence 98888753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=376.01 Aligned_cols=207 Identities=21% Similarity=0.276 Sum_probs=178.4
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..++++++|+++.|++. .|+.+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 266 ~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 330 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-------------- 330 (538)
T ss_dssp CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC--------------
T ss_pred ccceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe--------------
Confidence 45689999999999875 588899999999999999999999999999999999999999987542
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
.|+|++|+......+||+||+.+..... ... ....+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~---- 402 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASKDA--LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAK---- 402 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCSST--TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHS----
T ss_pred eeEeechhcccccCCCHHHHHHHhhhhc--cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc----
Confidence 4899999987666789999998742111 111 12346788999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC--CeEEEe
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE--GKIVWQ 324 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~--G~iv~~ 324 (352)
+|+||||||||+|||+.++..++++|++++++ | .|||+||||++++..+||||++|++ |.+...
T Consensus 403 ---~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g----------~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~ 469 (538)
T 3ozx_A 403 ---EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK----------AVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLA 469 (538)
T ss_dssp ---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred ---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEeCCcceeccC
Confidence 69999999999999999999999999999765 4 5999999999999999999999986 556666
Q ss_pred eccccc
Q 018638 325 GMTHEF 330 (352)
Q Consensus 325 g~~~~~ 330 (352)
+++.++
T Consensus 470 ~~~~~~ 475 (538)
T 3ozx_A 470 TSPVTL 475 (538)
T ss_dssp CCCEEH
T ss_pred CChHHH
Confidence 655544
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=368.53 Aligned_cols=213 Identities=22% Similarity=0.306 Sum_probs=179.4
Q ss_pred EeEEEEeCC-eeeeEeeeEEEeCC-----cEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 95 RNVYKSFGE-KHILRGVSFKIRHG-----EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 95 ~nls~~y~~-~~~L~~vsl~i~~G-----e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
++++++|++ ..+++++||++.+| |++||+||||||||||+|+|+|+++|++|+. +. +.+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~---------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP---------KLN 414 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC---------SCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc---------CCc
Confidence 567888876 46899999999999 7899999999999999999999999999962 11 225
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
++|+||+...+...||++|+..... ..... .+.+.++++.++|.+..++++.+|||||||||+|||||+.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~--~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~----- 484 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIR--GQFLN---PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGI----- 484 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCS--STTTS---HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTS-----
T ss_pred EEEecccccccCCccHHHHHHHHhh--ccccc---HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh-----
Confidence 9999999766555799998864321 11111 2346788999999999999999999999999999999996
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC--CeEEEee
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE--GKIVWQG 325 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~--G~iv~~g 325 (352)
+|+||||||||+|||+.++..++++|+++.+ .| .|||+||||++++..+||||++|++ |+++..|
T Consensus 485 --~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g----------~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g 552 (608)
T 3j16_B 485 --PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK----------KTAFIVEHDFIMATYLADKVIVFEGIPSKNAHAR 552 (608)
T ss_dssp --CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT----------CEEEEECSCHHHHHHHCSEEEECEEETTTEEECC
T ss_pred --CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecC
Confidence 6999999999999999999999999999864 46 5999999999999999999999996 8999999
Q ss_pred cccccccCCcHHHHHHhcC
Q 018638 326 MTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~ 344 (352)
+|+++++..+..++.+...
T Consensus 553 ~p~~~~~~~~~~~~~~~~~ 571 (608)
T 3j16_B 553 APESLLTGCNRFLKNLNVT 571 (608)
T ss_dssp CCEEHHHHHHHHHHHHTCC
T ss_pred ChHHHhhhhhHHHHhcCce
Confidence 9999876545556666533
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-44 Score=368.32 Aligned_cols=200 Identities=27% Similarity=0.365 Sum_probs=163.2
Q ss_pred EEE-EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE---------EECCEeCCCCCC
Q 018638 92 IDC-RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV---------YIRGRKRAGLIS 160 (352)
Q Consensus 92 l~~-~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I---------~i~G~~~~~~~~ 160 (352)
.++ +||+|+|+++ .+|++|| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++.....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 456 6999999876 4899999 999999999999999999999999999999999995 345543211000
Q ss_pred hhhhccceEEEEecCCCCCCC---CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH
Q 018638 161 DEEISGLRIGLVFQSAALFDS---LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~---lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI 237 (352)
.......++++++|...+++. .|+.+|+.... . .+++.++++.+|+.+..++++.+|||||||||+|
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-----~-----~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~i 169 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-----E-----TGKLEEVVKALELENVLEREIQHLSGGELQRVAI 169 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-----S-----SSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-----H-----HHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHH
Confidence 001112358999997644332 38999885310 1 1236789999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||++||+.++..++++|++++++| .|||+||||++++..+||||++|+
T Consensus 170 AraL~~-------~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g----------~tvi~vsHd~~~~~~~~dri~vl~ 232 (538)
T 1yqt_A 170 AAALLR-------NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG----------KSVLVVEHDLAVLDYLSDIIHVVY 232 (538)
T ss_dssp HHHHHS-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHhc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEc
Confidence 999996 699999999999999999999999999998766 599999999999999999999998
Q ss_pred CC
Q 018638 318 EG 319 (352)
Q Consensus 318 ~G 319 (352)
+|
T Consensus 233 ~~ 234 (538)
T 1yqt_A 233 GE 234 (538)
T ss_dssp EE
T ss_pred Cc
Confidence 65
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-44 Score=372.46 Aligned_cols=201 Identities=28% Similarity=0.406 Sum_probs=166.5
Q ss_pred eEEE--------EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE---------EECC
Q 018638 91 LIDC--------RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV---------YIRG 152 (352)
Q Consensus 91 ~l~~--------~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I---------~i~G 152 (352)
+|++ +||+++|+++ .+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4888 8999999876 4999999 999999999999999999999999999999999996 3455
Q ss_pred EeCCCCCChhhhccceEEEEecCCCCCC---CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCCh
Q 018638 153 RKRAGLISDEEISGLRIGLVFQSAALFD---SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG 229 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~ig~v~Q~~~l~~---~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSG 229 (352)
.++..........+.++++++|...+++ ..||.||+... .. .+++.++++.+||++..++++.+|||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-----~~-----~~~~~~~L~~lgL~~~~~~~~~~LSG 231 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-----DE-----VGKFEEVVKELELENVLDRELHQLSG 231 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-----CC-----SSCHHHHHHHTTCTTGGGSBGGGCCH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-----HH-----HHHHHHHHHHcCCCchhCCChhhCCH
Confidence 4321100000112235889999753322 23999998641 01 12367889999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh
Q 018638 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (352)
Q Consensus 230 GqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~ 309 (352)
||||||+|||||+. +|++|||||||++||+.++..+.++|+++.++| .|||+||||++++..+
T Consensus 232 GekQRvaIAraL~~-------~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g----------~tvIivsHdl~~~~~~ 294 (607)
T 3bk7_A 232 GELQRVAIAAALLR-------KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG----------KAVLVVEHDLAVLDYL 294 (607)
T ss_dssp HHHHHHHHHHHHHS-------CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEecChHHHHhh
Confidence 99999999999997 699999999999999999999999999998766 5999999999999999
Q ss_pred cCEEEEEeCC
Q 018638 310 VDRLIFLYEG 319 (352)
Q Consensus 310 aDrv~vL~~G 319 (352)
||||++|+++
T Consensus 295 adri~vl~~~ 304 (607)
T 3bk7_A 295 SDVIHVVYGE 304 (607)
T ss_dssp CSEEEEEESC
T ss_pred CCEEEEECCC
Confidence 9999999865
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=362.31 Aligned_cols=217 Identities=26% Similarity=0.380 Sum_probs=147.4
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHH---------------------HHHHcCCCCC-------ceEEEECCEe
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTIL---------------------KIIAGLLAPD-------KGEVYIRGRK 154 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLl---------------------k~l~Gl~~p~-------~G~I~i~G~~ 154 (352)
..++|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 9999999999 4566666654
Q ss_pred CCCCCChhhhccceEEEEecCC-------------------CCCCCCCHHHHHHhhhhhcC-CCCH-------HHHHHHH
Q 018638 155 RAGLISDEEISGLRIGLVFQSA-------------------ALFDSLTVRENVGFLLYENS-KMRD-------EQISELV 207 (352)
Q Consensus 155 ~~~~~~~~~~~~~~ig~v~Q~~-------------------~l~~~lTV~eni~~~~~~~~-~~~~-------~~~~~~v 207 (352)
.... .+..+|+|+|.+ ..++.+||+||+.+...... .... ++..++
T Consensus 110 ~~~~------~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (670)
T 3ux8_A 110 TSRN------PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR- 182 (670)
T ss_dssp -----------CCBHHHHTTCC-------------------------CC--------------------------CHHH-
T ss_pred hhcc------chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-
Confidence 3211 111244444432 23567899999987421110 0000 011111
Q ss_pred HHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 018638 208 KENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPE--VLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284 (352)
Q Consensus 208 ~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~--llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~ 284 (352)
.++++.+||.+. .++++.+|||||||||+|||||+. +|+ +|||||||+|||+..+..++++|++++++|
T Consensus 183 ~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~-------~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g- 254 (670)
T 3ux8_A 183 LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS-------RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG- 254 (670)
T ss_dssp HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHT-------CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTT-
T ss_pred HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhh-------CCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcC-
Confidence 245889999764 789999999999999999999997 476 999999999999999999999999998776
Q ss_pred CCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeecccccccCCcHHHHHHhcC
Q 018638 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 285 ~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
.|||+||||++.+. .||||++| ++|++++.|+++++..........++.+
T Consensus 255 ---------~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 310 (670)
T 3ux8_A 255 ---------NTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSG 310 (670)
T ss_dssp ---------CEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHHHTT
T ss_pred ---------CEEEEEeCCHHHHh-hCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHHhcc
Confidence 59999999999876 59999999 8999999999998875544444555543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=372.70 Aligned_cols=206 Identities=22% Similarity=0.373 Sum_probs=165.4
Q ss_pred CcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 88 GDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+.++|+++||+++|++ +++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~------------ 735 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN------------ 735 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT------------
T ss_pred CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc------------
Confidence 3578999999999975 67999999999999999999999999999999999999999999999762
Q ss_pred cceEEEEecCCCC----CCCCCHHHHHHhhhhhc----------------------------------------------
Q 018638 166 GLRIGLVFQSAAL----FDSLTVRENVGFLLYEN---------------------------------------------- 195 (352)
Q Consensus 166 ~~~ig~v~Q~~~l----~~~lTV~eni~~~~~~~---------------------------------------------- 195 (352)
.+|+|++|++.. ....|+.+++.+.....
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 137777776421 12346666664421000
Q ss_pred ------------------------------------------------------CCCCHHHHHHHHHHHHHHcCCCc-c-
Q 018638 196 ------------------------------------------------------SKMRDEQISELVKENLAAVGLKG-V- 219 (352)
Q Consensus 196 ------------------------------------------------------~~~~~~~~~~~v~~~l~~~gL~~-~- 219 (352)
.+.......+++.++|+.+||.. .
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 00000011345788999999975 4
Q ss_pred cccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 018638 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (352)
Q Consensus 220 ~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIiv 299 (352)
.++++.+|||||||||+|||||+. +|+||||||||+|||+.+...+.+.|+++ + .|||+|
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~-------~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g----------~tVIiI 954 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQ-------RPHLIVLDEPTNYLDRDSLGALSKALKEF---E----------GGVIII 954 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTT-------CCSEEEEECGGGTCCHHHHHHHHHHHHSC---S----------SEEEEE
T ss_pred cCCCccccCHHHHHHHHHHHHHHh-------CCCEEEEECCccCCCHHHHHHHHHHHHHh---C----------CEEEEE
Confidence 688999999999999999999996 69999999999999999999988888654 3 389999
Q ss_pred cCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 300 THQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 300 THdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
|||++++..+|||+++|++|+++..|+
T Consensus 955 SHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 955 THSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999988774
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=360.52 Aligned_cols=197 Identities=26% Similarity=0.386 Sum_probs=169.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
.|...|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+.. . ..+++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~-----~---~~~~~ 498 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ-----E---ECRTV 498 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT-----T---TSCEE
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc-----c---ceeEE
Confidence 4777799999999999999999999999999999999999999999995 544 453321 1 12478
Q ss_pred EEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 171 LVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 171 ~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|++|++ .+++.+||.||+.+. ..+. .+++.++++.+|+. +..++++.+|||||||||+|||||+.
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~---~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~----- 565 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFES---GVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLR----- 565 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTT---CSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHT-----
T ss_pred EEcccccccccCCcHHHHHHHh---hcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhc-----
Confidence 999985 678889999999761 1111 45688899999995 68899999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE-Eeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV-WQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv-~~g~~ 327 (352)
+|+||||||||++||+.++..+.++|++ .| .|||+||||++++..+||||++|++|+++ ..|++
T Consensus 566 --~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g----------~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~ 630 (986)
T 2iw3_A 566 --NADILLLDEPTNHLDTVNVAWLVNYLNT---CG----------ITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNF 630 (986)
T ss_dssp --TCSEEEEESTTTTCCHHHHHHHHHHHHH---SC----------SEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCH
T ss_pred --CCCEEEEECCccCCCHHHHHHHHHHHHh---CC----------CEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCH
Confidence 6999999999999999999999999987 44 59999999999999999999999999997 57877
Q ss_pred cccc
Q 018638 328 HEFT 331 (352)
Q Consensus 328 ~~~~ 331 (352)
+++.
T Consensus 631 ~e~~ 634 (986)
T 2iw3_A 631 TEFV 634 (986)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=347.92 Aligned_cols=216 Identities=25% Similarity=0.324 Sum_probs=160.8
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH----------------------cCCCCCceEEEECCEeCCCCCCh
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA----------------------GLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~----------------------Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
..+|+||||+|++||+++|+||||||||||+++|+ |+..+ .|.|.+++.++......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 45899999999999999999999999999998754 44444 46888888765432110
Q ss_pred hhh---------------------------------------ccceEEEEecCCCCCC----------------------
Q 018638 162 EEI---------------------------------------SGLRIGLVFQSAALFD---------------------- 180 (352)
Q Consensus 162 ~~~---------------------------------------~~~~ig~v~Q~~~l~~---------------------- 180 (352)
... .....|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 000 0001345555443332
Q ss_pred ----------CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 181 ----------SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 181 ----------~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
.+||+||+.+... .. . .+++.+.++.+|+.. ..++++.+|||||||||+|||||+++ .
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~-----~~-~-~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~----p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS-----IP-K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRR----S 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT-----CH-H-HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSC----C
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH-----hh-h-HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhC----C
Confidence 4789999987431 11 1 234567889999964 57899999999999999999999974 1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEE
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVW 323 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~ 323 (352)
.+|+||||||||+|||+.++..++++|++++++| .|||+||||++.+. .||||++| ++|+|++
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g----------~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~ 631 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG----------DTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVA 631 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEE
Confidence 1357999999999999999999999999998776 59999999999875 69999999 8999999
Q ss_pred eecccccccCCcHHHHHHh
Q 018638 324 QGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 324 ~g~~~~~~~~~~~~~~~~~ 342 (352)
+|+++++......+...++
T Consensus 632 ~g~~~~~~~~~~~~~~~~~ 650 (670)
T 3ux8_A 632 VGTPEEVAEVKESHTGRYL 650 (670)
T ss_dssp EECHHHHHTCTTCHHHHHH
T ss_pred ecCHHHHHhCCccHHHHHH
Confidence 9999988654444444444
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=338.30 Aligned_cols=201 Identities=26% Similarity=0.326 Sum_probs=152.8
Q ss_pred eEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE-----------ECCEeCCCCCChhh
Q 018638 96 NVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDEE 163 (352)
Q Consensus 96 nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~-----------i~G~~~~~~~~~~~ 163 (352)
|++++|+.. ..|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. +.|.++........
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 568899754 4677777 6899999999999999999999999999999999982 33322110000000
Q ss_pred hccceEEEEecCCCC------CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAAL------FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l------~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI 237 (352)
.......+.+|.... .+..++.+++... ... ..+++.++++.+||.+..++++.+|||||||||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~----~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR----MEK----SPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH----CCS----CHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh----hhh----HHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 001112334443211 1123555555431 111 12457889999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||++||+.++..+.++|++++++| .|||+||||++++..+||||++|+
T Consensus 233 AraL~~-------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g----------~tvi~vtHdl~~~~~~~drv~vl~ 295 (608)
T 3j16_B 233 GMSCVQ-------EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT----------KYVICVEHDLSVLDYLSDFVCIIY 295 (608)
T ss_dssp HHHHHS-------CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTT----------CEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHh-------CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999997 699999999999999999999999999998776 599999999999999999999999
Q ss_pred CCeEE
Q 018638 318 EGKIV 322 (352)
Q Consensus 318 ~G~iv 322 (352)
+|..+
T Consensus 296 ~~~~~ 300 (608)
T 3j16_B 296 GVPSV 300 (608)
T ss_dssp SCTTT
T ss_pred CCccc
Confidence 87543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=331.03 Aligned_cols=195 Identities=23% Similarity=0.334 Sum_probs=152.5
Q ss_pred eEEEEeCCeeeeEeeeEEE-eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE-----------EECCEeCCCCCChhh
Q 018638 96 NVYKSFGEKHILRGVSFKI-RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-----------YIRGRKRAGLISDEE 163 (352)
Q Consensus 96 nls~~y~~~~~L~~vsl~i-~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I-----------~i~G~~~~~~~~~~~ 163 (352)
+++.+||.. .++-..|.+ ++||++||+||||||||||+|+|+|+++|++|+| .++|+++........
T Consensus 4 ~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 567889753 245555544 4899999999999999999999999999999998 567765421100000
Q ss_pred hccceEEEEecCC----CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSA----ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~----~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIAr 239 (352)
.....+...+|.. .++. .++.+++.... . .+++.++++.+|+....++++.+|||||||||+|||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~~-----~-----~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~ 151 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLK-GTVNEILTKID-----E-----RGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAA 151 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCC-SBHHHHHHHHC-----C-----SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHH
T ss_pred hcccchhhccchhhhhhhhcc-CcHHHHhhcch-----h-----HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 1112355555543 3343 48888764310 1 123667899999999999999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||++||+.++..+.++|+++++ | .|||+||||++++..+||+|++|++|
T Consensus 152 aL~~-------~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g----------~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 152 SLLR-------EADVYIFDQPSSYLDVRERMNMAKAIRELLK-N----------KYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHS-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-T----------SEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHhC-C----------CEEEEEEeChHHHHhhCCEEEEecCC
Confidence 9997 6999999999999999999999999999965 5 59999999999999999999999876
Q ss_pred e
Q 018638 320 K 320 (352)
Q Consensus 320 ~ 320 (352)
.
T Consensus 214 ~ 214 (538)
T 3ozx_A 214 S 214 (538)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=324.93 Aligned_cols=227 Identities=22% Similarity=0.316 Sum_probs=172.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHH---------HHHHcCCCCC------ce------EEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTIL---------KIIAGLLAPD------KG------EVY 149 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLl---------k~l~Gl~~p~------~G------~I~ 149 (352)
.+++++++ ...|+||||+|++|++++|+||||||||||+ +++.+...+. +| .|.
T Consensus 589 ~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~ 663 (916)
T 3pih_A 589 SLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIA 663 (916)
T ss_dssp EEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEE
T ss_pred eEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEe
Confidence 46666653 3579999999999999999999999999997 4555544433 23 244
Q ss_pred ECCEeCCCCCC--hh-------------------h------------------hccceEEEEecCCCCCCC---------
Q 018638 150 IRGRKRAGLIS--DE-------------------E------------------ISGLRIGLVFQSAALFDS--------- 181 (352)
Q Consensus 150 i~G~~~~~~~~--~~-------------------~------------------~~~~~ig~v~Q~~~l~~~--------- 181 (352)
++..++..... .. . ......|+++|+..+++.
T Consensus 664 idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~ 743 (916)
T 3pih_A 664 IDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCK 743 (916)
T ss_dssp ECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTT
T ss_pred eccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccccc
Confidence 44433321100 00 0 001135788887766553
Q ss_pred -----------------------CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHH
Q 018638 182 -----------------------LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 182 -----------------------lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaI 237 (352)
+||.|++.|... . + ...++.++|+.+||.. .+++++.+|||||||||+|
T Consensus 744 g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~----~-~--~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~L 816 (916)
T 3pih_A 744 GKRYNRETLEITYKGKNISDILDMTVDEALEFFKN----I-P--SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKL 816 (916)
T ss_dssp TSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT----C-H--HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHH
T ss_pred ccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc----c-h--hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHH
Confidence 678888876321 1 1 1245678999999975 5689999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE-
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL- 316 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL- 316 (352)
||||+++ ..+|+||||||||+|||+..+..++++|++++++| .|||+||||++++.. ||+|++|
T Consensus 817 AraL~~~----p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G----------~TVIvI~HdL~~i~~-ADrIivLg 881 (916)
T 3pih_A 817 ASELRKR----DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG----------NTVIVIEHNLDVIKN-ADHIIDLG 881 (916)
T ss_dssp HHHHTSC----CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHTT-CSEEEEEE
T ss_pred HHHHhhC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHh-CCEEEEec
Confidence 9999863 12468999999999999999999999999998777 599999999999865 9999999
Q ss_pred -----eCCeEEEeecccccccCCcHHHHHHhcC
Q 018638 317 -----YEGKIVWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 317 -----~~G~iv~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
++|+|++.|+++++....+.++..++..
T Consensus 882 p~gg~~~G~Iv~~Gtpeel~~~~~syt~~~l~~ 914 (916)
T 3pih_A 882 PEGGKEGGYIVATGTPEEIAKNPHSYTGRFLKN 914 (916)
T ss_dssp SSSGGGCCEEEEEESHHHHHSCTTCHHHHHHTT
T ss_pred CCCCCCCCEEEEEcCHHHHHhCCchHHHHHHHh
Confidence 8999999999999887777888888753
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=328.74 Aligned_cols=231 Identities=19% Similarity=0.283 Sum_probs=167.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHH-HHcCC-------CC-----------------
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI-IAGLL-------AP----------------- 143 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~-l~Gl~-------~p----------------- 143 (352)
...|+++|+++ .+|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 500 AGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp SCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred CceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 46799999985 26999999999999999999999999999996 77554 23
Q ss_pred -Cce-------EEEECCEeCCCCCCh---------hhhc---------c---------------------ceEEEEecCC
Q 018638 144 -DKG-------EVYIRGRKRAGLISD---------EEIS---------G---------------------LRIGLVFQSA 176 (352)
Q Consensus 144 -~~G-------~I~i~G~~~~~~~~~---------~~~~---------~---------------------~~ig~v~Q~~ 176 (352)
.+| .|.+++.++...... ...+ + ...|++..+.
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 467 688888766422110 0000 0 0122222222
Q ss_pred CCCC------------------------CCCHHHHHHhhhh----hcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCC
Q 018638 177 ALFD------------------------SLTVRENVGFLLY----ENSKMRDEQISELVKENLAAVGLKG-VEDRLPSEL 227 (352)
Q Consensus 177 ~l~~------------------------~lTV~eni~~~~~----~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~L 227 (352)
.+++ ..++.||+.+... .... .. . .+++.++|+.+||.. ..++++.+|
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-~~-~-~~~~~~~L~~~gL~~~~l~~~~~~L 731 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-ES-A-IFRALDTLREVGLGYLRLGQPATEL 731 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-SH-H-HHHHHHHHHHTTCTTSBTTCCGGGC
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-ch-H-HHHHHHHHHHcCCCcccccCCcccC
Confidence 2222 2455555432211 0111 11 2 245788999999987 468999999
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 228 SGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
||||||||+|||+|+++ ..+|+||||||||+|||+..+..++++|++++++| .|||+||||++++
T Consensus 732 SGGekQRv~LAraL~~~----p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G----------~tVIvisHdl~~i- 796 (842)
T 2vf7_A 732 SGGEAQRIKLATELRRS----GRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG----------NTVIAVEHKMQVV- 796 (842)
T ss_dssp CHHHHHHHHHHHTTSSC----CSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHH-
T ss_pred CHHHHHHHHHHHHHHhC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHH-
Confidence 99999999999999962 00379999999999999999999999999998877 5999999999999
Q ss_pred hhcCEEEEE------eCCeEEEeecccccccCCcHHHHHHh
Q 018638 308 RAVDRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 308 ~~aDrv~vL------~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
..||||++| ++|+|++.|+++++......++..++
T Consensus 797 ~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~~~l 837 (842)
T 2vf7_A 797 AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYL 837 (842)
T ss_dssp TTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTTCSSHHHH
T ss_pred HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCchhHHHHHH
Confidence 689999999 79999999999988654333333333
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=328.17 Aligned_cols=226 Identities=25% Similarity=0.326 Sum_probs=169.9
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH-cCC-------CCCce-------------E
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-GLL-------APDKG-------------E 147 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~-Gl~-------~p~~G-------------~ 147 (352)
.+.|+++|++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .
T Consensus 627 ~~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 627 GRWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp SCEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred ceEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 35799999963 4799999999999999999999999999999864 221 12233 4
Q ss_pred EEECCEeCCCCCC--hh-------hh--------ccceEEEEecCCCCCC------------------------------
Q 018638 148 VYIRGRKRAGLIS--DE-------EI--------SGLRIGLVFQSAALFD------------------------------ 180 (352)
Q Consensus 148 I~i~G~~~~~~~~--~~-------~~--------~~~~ig~v~Q~~~l~~------------------------------ 180 (352)
|.+++.++..... .. .. ..+.+||++|.+.+.+
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 7888876532111 00 00 0113578777543211
Q ss_pred ------------------------CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHH
Q 018638 181 ------------------------SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRV 235 (352)
Q Consensus 181 ------------------------~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRv 235 (352)
.+||.|++.|.. .. . .. +++.++|+.+||.. ..++++.+|||||||||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~----~~-~-~~-~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv 854 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA----SI-P-KI-KRKLETLYDVGLGYMKLGQPATTLSGGEAQRV 854 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC----SC-H-HH-HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh----cc-h-hH-HHHHHHHHHcCCCcccccCchhhCCHHHHHHH
Confidence 357777776532 11 1 12 33568999999987 78999999999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
+|||+|+++ ..+|+||||||||+|||+..+..++++|+++.++| .|||+||||++++. .||||++
T Consensus 855 ~LAraL~~~----p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G----------~TVIvisHdl~~i~-~aDrIiv 919 (972)
T 2r6f_A 855 KLAAELHRR----SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG----------DTVLVIEHNLDVIK-TADYIID 919 (972)
T ss_dssp HHHHHHSSC----CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHT-TCSEEEE
T ss_pred HHHHHHhcC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHHH-hCCEEEE
Confidence 999999963 11369999999999999999999999999998776 59999999999974 7999999
Q ss_pred E------eCCeEEEeecccccccCCcHHHHHH
Q 018638 316 L------YEGKIVWQGMTHEFTSSSNPIVQQF 341 (352)
Q Consensus 316 L------~~G~iv~~g~~~~~~~~~~~~~~~~ 341 (352)
| ++|+|++.|+++++......++..+
T Consensus 920 L~p~gG~~~G~Iv~~g~~~el~~~~~~~t~~~ 951 (972)
T 2r6f_A 920 LGPEGGDRGGQIVAVGTPEEVAEVKESHTGRY 951 (972)
T ss_dssp ECSSSTTSCCSEEEEESHHHHHTCTTCHHHHH
T ss_pred EcCCCCCCCCEEEEecCHHHHHhCchhHHHHH
Confidence 9 7999999999988765433344433
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-41 Score=338.52 Aligned_cols=212 Identities=14% Similarity=0.121 Sum_probs=171.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce-E-EEECCEeCCCCCChhhhcc
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-E-VYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G-~-I~i~G~~~~~~~~~~~~~~ 166 (352)
.+|++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|. . +
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-~----------~ 178 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-P----------Q 178 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-T----------T
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-c----------c
Confidence 46799999999996 79999999999999999999999999999999999999 9 999982 1 2
Q ss_pred ceEEEEecCCCC---CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHH--H
Q 018638 167 LRIGLVFQSAAL---FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS--I 241 (352)
Q Consensus 167 ~~ig~v~Q~~~l---~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArA--L 241 (352)
++++|+||+..+ ++.+||+||+ |+.....+... .+++.++++.+|+.+..+ +.+|||||||||+|||| |
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~---~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL 252 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATL---LHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRL 252 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCS---SCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcch---HHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHh
Confidence 358999999853 4457999998 75432111111 123556788899988766 89999999999999999 9
Q ss_pred hccCCCCCCCCcE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH------HHHhhc
Q 018638 242 IFDNTKESVEPEV----LLYDE-PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS------TIRRAV 310 (352)
Q Consensus 242 ~~~~~~~a~~p~l----lLLDE-PtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~------~i~~~a 310 (352)
+. +|++ ||||| ||++||+. ...+.++++++ + .|+|+||||++ ++..+|
T Consensus 253 ~~-------~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~----------~tviiVth~~~~~l~~~~~~~~~ 311 (460)
T 2npi_A 253 HL-------DPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---N----------VNIMLVLCSETDPLWEKVKKTFG 311 (460)
T ss_dssp HH-------CHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---T----------CCEEEEECCSSCTHHHHHHHHHH
T ss_pred cc-------CcccCcceEEEeCCcccccChh-HHHHHHHHHHh---C----------CCEEEEEccCchhhhHHHHHHhc
Confidence 97 5999 99999 99999999 55555555443 3 48999999988 888999
Q ss_pred CE-----EEEEe-CCeEEEeecccccccCCcHHHHHHhcCC
Q 018638 311 DR-----LIFLY-EGKIVWQGMTHEFTSSSNPIVQQFASGS 345 (352)
Q Consensus 311 Dr-----v~vL~-~G~iv~~g~~~~~~~~~~~~~~~~~~~~ 345 (352)
|| |++|+ +|+++ .|+++++....+..+++++.|.
T Consensus 312 dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~i~~~f~g~ 351 (460)
T 2npi_A 312 PELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTSIREYFYGS 351 (460)
T ss_dssp HHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHHHHHHhCCC
Confidence 99 99999 99999 8987776444456677777654
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=280.46 Aligned_cols=199 Identities=21% Similarity=0.284 Sum_probs=146.6
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--------------------------------------CCce
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--------------------------------------PDKG 146 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--------------------------------------p~~G 146 (352)
.+|+++||+|.+| +++|+||||||||||+++|+++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5799999999999 999999999999999999988774 4578
Q ss_pred EEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC---------------------CC-------
Q 018638 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS---------------------KM------- 198 (352)
Q Consensus 147 ~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~---------------------~~------- 198 (352)
+++++|+++... .........+++++|+..++. .+..++..|.-.... ..
T Consensus 128 ~i~ing~~~~~~-~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 128 AARLSGEVVSVR-ELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEETTEEECHH-HHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred EEEECCEECCHH-HHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999986421 112222334899999987764 355544433110000 00
Q ss_pred -------------------------------CHHHHHHHHHHHHHHcCCCcc-----------------------cc---
Q 018638 199 -------------------------------RDEQISELVKENLAAVGLKGV-----------------------ED--- 221 (352)
Q Consensus 199 -------------------------------~~~~~~~~v~~~l~~~gL~~~-----------------------~~--- 221 (352)
......+.+.+.++.+++... ..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 001122344555666665320 11
Q ss_pred ----cCCCC-CChHHHHHHHHHHHHhccCCCCCCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 018638 222 ----RLPSE-LSGGMKKRVALARSIIFDNTKESVEP--EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (352)
Q Consensus 222 ----~~~~~-LSGGqrQRvaIArAL~~~~~~~a~~p--~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~ 294 (352)
+++.. |||||||||+||++|+. +| ++|||||||++||+..+..+.+.|+++. +| .
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~-------~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~----------~ 347 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVL-------GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DT----------R 347 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHH-------CCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TT----------S
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHh-------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CC----------C
Confidence 11222 79999999999999997 58 9999999999999999999999999997 45 4
Q ss_pred EEEEEcCCHHHHHhhcCEEEEE----eCCeEEEee
Q 018638 295 SYVVVTHQHSTIRRAVDRLIFL----YEGKIVWQG 325 (352)
Q Consensus 295 tvIivTHdl~~i~~~aDrv~vL----~~G~iv~~g 325 (352)
|||+||||++.+ .+|||+++| ++|+++...
T Consensus 348 ~vi~itH~~~~~-~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 348 QVLVVTHLAQIA-ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEECSCHHHH-TTCSEEEEEEEEEETTEEEEEE
T ss_pred EEEEEeCcHHHH-hhcCeEEEEEEeccCCceEEEE
Confidence 999999999776 579999999 999987764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=254.73 Aligned_cols=85 Identities=20% Similarity=0.327 Sum_probs=77.7
Q ss_pred ccCCCCCChHHHHHHHHHHHHh------ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 018638 221 DRLPSELSGGMKKRVALARSII------FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (352)
Q Consensus 221 ~~~~~~LSGGqrQRvaIArAL~------~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~ 294 (352)
++++.+|||||||||+|||||+ . +|++|||||||++||+..+..++++|+++.++| .
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~-------~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g----------~ 336 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASG-------RLDAFFIDEGFSSLDTENKEKIASVLKELERLN----------K 336 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTT-------TCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSS----------S
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccC-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------C
Confidence 5788999999999999999998 4 599999999999999999999999999997766 5
Q ss_pred EEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 295 SYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 295 tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
|||+||||++. ...|||+++|++|++++
T Consensus 337 tvi~itH~~~~-~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 337 VIVFITHDREF-SEAFDRKLRITGGVVVN 364 (365)
T ss_dssp EEEEEESCHHH-HTTCSCEEEEETTEEC-
T ss_pred EEEEEecchHH-HHhCCEEEEEECCEEEe
Confidence 99999999998 56789999999999975
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-34 Score=263.18 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=105.8
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 99 ~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
|+|+++.+|++| ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++.. .... .+.+|||+||++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~--~~~~-~~~~ig~v~q~~-- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR--PAVE-AGEKLGFLPGTL-- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE--CSCC-TTCCCCSSCC----
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC--Cchh-hhcceEEecCCH--
Confidence 356777899996 89999999999999999999999999 999999943 22211 1111 133699999986
Q ss_pred CCCCCHHHHH-Hhhh----hhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 179 FDSLTVRENV-GFLL----YENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 179 ~~~lTV~eni-~~~~----~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
+||+ .+.. ....... .+++.++++. ++ ||||||+|||||+. +|+
T Consensus 76 ------~enl~~~~~~~~~~~~~~~~----~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~-------~p~ 124 (208)
T 3b85_A 76 ------NEKIDPYLRPLHDALRDMVE----PEVIPKLMEA-GI-------------VEVAPLAYMRGRTL-------NDA 124 (208)
T ss_dssp ----------CTTTHHHHHHHTTTSC----TTHHHHHHHT-TS-------------EEEEEGGGGTTCCB-------CSE
T ss_pred ------HHHHHHHHHHHHHHHHHhcc----HHHHHHHHHh-CC-------------chHHHHHHHHHHhc-------CCC
Confidence 3444 2211 0001011 1235556665 44 99999999999997 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|||||||++ ++..++++|+++ ++| .||| ||||++++.. +..+++|..
T Consensus 125 lllLDEPts~----~~~~l~~~l~~l-~~g----------~tii-vtHd~~~~~~----~~~~~~G~~ 172 (208)
T 3b85_A 125 FVILDEAQNT----TPAQMKMFLTRL-GFG----------SKMV-VTGDITQVDL----PGGQKSGLR 172 (208)
T ss_dssp EEEECSGGGC----CHHHHHHHHTTB-CTT----------CEEE-EEEC----------------CCH
T ss_pred EEEEeCCccc----cHHHHHHHHHHh-cCC----------CEEE-EECCHHHHhC----cCCCCCcHH
Confidence 9999999999 888999999988 555 5899 9999987653 444567754
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-30 Score=250.86 Aligned_cols=205 Identities=24% Similarity=0.298 Sum_probs=130.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC------------------------------
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL------------------------------ 141 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~------------------------------ 141 (352)
|+++| .++|+ ++++|++.+| +++|+||||||||||+++|..++
T Consensus 6 L~i~n-fr~~~-----~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~ 78 (322)
T 1e69_A 6 LYLKG-FKSFG-----RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSA 78 (322)
T ss_dssp EEEES-BTTBC-----SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEE
T ss_pred EEEeC-ceeec-----CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceE
Confidence 66777 34553 3578889999 99999999999999999999654
Q ss_pred --------------------CCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCC----
Q 018638 142 --------------------APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK---- 197 (352)
Q Consensus 142 --------------------~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~---- 197 (352)
.+.+|++++||++... ...... ...+++.+|+..+++..++.+++.........
T Consensus 79 ~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~-~~~~~~-~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~ 156 (322)
T 1e69_A 79 YVELVFEENGEEITVARELKRTGENTYYLNGSPVRL-KDIRDR-FAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSK 156 (322)
T ss_dssp EEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECH-HHHHHH-TTTSSTTTTCCSEEEHHHHHHHHTC-----------
T ss_pred EEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccH-HHHHHH-HHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHH
Confidence 2345788899987521 111111 11355555554444323344433221100000
Q ss_pred --------CCHHHHHH---------------------HHHHHHHHcCC------CcccccCCCCCChHHHHHHHHHHHHh
Q 018638 198 --------MRDEQISE---------------------LVKENLAAVGL------KGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 198 --------~~~~~~~~---------------------~v~~~l~~~gL------~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
...+.+.+ ++.+.++. |+ .+..++++.+||||||||++|||||+
T Consensus 157 ~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~ 235 (322)
T 1e69_A 157 HPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFA 235 (322)
T ss_dssp ----------CHHHHHHHHHHHHHHHTSCEEEC---------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCchhhCCHHHHHHHHHHHHHH
Confidence 00000111 11122322 22 12356678899999999999999997
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEE--EEEeCCe
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL--IFLYEGK 320 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv--~vL~~G~ 320 (352)
.. ...+|++|||||||++||+..+..+.++|+++. ++ .|||+|||+.+ +..+||++ ++|.+|+
T Consensus 236 ~~---~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~----------~~vi~~tH~~~-~~~~~d~~~~v~~~~g~ 300 (322)
T 1e69_A 236 LM---EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KH----------TQFIVITHNKI-VMEAADLLHGVTMVNGV 300 (322)
T ss_dssp HT---TTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TT----------SEEEEECCCTT-GGGGCSEEEEEEESSSC
T ss_pred Hh---ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CC----------CeEEEEECCHH-HHhhCceEEEEEEeCCE
Confidence 20 001589999999999999999999999999984 34 58999999965 56789987 8888885
Q ss_pred E
Q 018638 321 I 321 (352)
Q Consensus 321 i 321 (352)
.
T Consensus 301 s 301 (322)
T 1e69_A 301 S 301 (322)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-30 Score=227.80 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=107.6
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC-CCCCCHHHH
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL-FDSLTVREN 187 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l-~~~lTV~en 187 (352)
||||+|++||+++|+||||||||||+|++.+ |...++ .... .|+++|++.- +...+++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~---------~d~~----~g~~~~~~~~~~~~~~~~~~ 61 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS---------SDFC----RGLMSDDENDQTVTGAAFDV 61 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE---------HHHH----HHHHCSSTTCGGGHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc---------cHHH----HHHhcCcccchhhHHHHHHH
Confidence 6899999999999999999999999999653 211121 1111 2678887531 111122222
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHH
Q 018638 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (352)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~ 267 (352)
+.. .. +.....|.....+. ....|||||||++||||++. +|++|+|||||++||+.
T Consensus 62 ~~~---------------~~-~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~-------~p~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 62 LHY---------------IV-SKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHC-------FPVAVVFNLPEKVCQER 117 (171)
T ss_dssp HHH---------------HH-HHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTC-------EEEEEEECCCHHHHHHH
T ss_pred HHH---------------HH-HHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCC-------cEEEEEEeCCHHHHHHH
Confidence 211 11 22233455544443 35569999999999999986 69999999999999999
Q ss_pred ----------------HHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 268 ----------------ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 268 ----------------~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
....+++.|++++++| .|+|+||||++++..+ ++
T Consensus 118 ~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g----------~tvi~vtH~~~~~~~~-~~ 167 (171)
T 4gp7_A 118 NKNRTDRQVEEYVIRKHTQQMKKSIKGLQREG----------FRYVYILNSPEEVEEV-VF 167 (171)
T ss_dssp HHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHT----------CSEEEEECSHHHHHHE-EE
T ss_pred HhcccCCCCCHHHHHHHHHHhhhhhhhHHhcC----------CcEEEEeCCHHHhhhh-hh
Confidence 5688999999998777 5999999999998764 44
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-32 Score=248.33 Aligned_cols=178 Identities=13% Similarity=0.144 Sum_probs=127.5
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
..+++| .+|++||+++|+||||||||||+|+|+|+++. |.+++..... .. ....+.+++|+||++.+|+.+|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~-~~-~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTR-AP-RPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESS-CC-CTTCCBTTTBEECCHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEccccccc-CC-cccccCCCeeEecCHHHHHHHH
Confidence 457888 79999999999999999999999999999963 4444422111 01 1111235899999998888888
Q ss_pred HHHHHHhhhh-----hcCCCCHHHHHHHHHHH------HHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 184 VRENVGFLLY-----ENSKMRDEQISELVKEN------LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 184 V~eni~~~~~-----~~~~~~~~~~~~~v~~~------l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
+.+|+.+... ...+.+.++..+++.+. ++.+|+..+.++++.+|| +|+. +|
T Consensus 81 ~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~-------~p 142 (207)
T 1znw_A 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLA-------PP 142 (207)
T ss_dssp HTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEE-------CS
T ss_pred hcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEE-------CC
Confidence 8887643211 11123445555666665 677778778888999999 7876 59
Q ss_pred cEEEEeCCCCCC----CHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 253 EVLLYDEPTAGL----DPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 253 ~llLLDEPtsgL----D~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
++++|||||+++ |+..+.++.++++++.++ | .|+|+||||++++..+||||++|.
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g----------~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQGD----------FDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGG----------SSEEEECSSHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc----------CcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999998 788999999999999754 4 599999999999999999999984
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-31 Score=265.72 Aligned_cols=187 Identities=15% Similarity=0.176 Sum_probs=144.7
Q ss_pred eeeeEeeeEEEeCCc--------------------EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 104 KHILRGVSFKIRHGE--------------------AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge--------------------~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
+.+|++|||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 458999999999999 99999999999999999999999999999999987531
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChH--HHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGG--MKKRVALARSI 241 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGG--qrQRvaIArAL 241 (352)
+ .+|++|++ .++.+|+.||+.++. . ...+.++++.+++.+.. ..+. ||+| ||||++||+||
T Consensus 109 --~--~~~v~q~~-~~~~ltv~D~~g~~~---~-------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 109 --M--ERHPYKHP-NIPNVVFWDLPGIGS---T-------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAI 171 (413)
T ss_dssp --C--CCEEEECS-SCTTEEEEECCCGGG---S-------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHH
T ss_pred --e--eEEecccc-ccCCeeehHhhcccc---h-------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHH
Confidence 1 27899985 567789999886642 1 12367789999987653 3344 9999 99999999999
Q ss_pred hccCCC---CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcCCCCCCCCCCceEEEEEcCCHHH--HHhhcC
Q 018638 242 IFDNTK---ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH-----KKGENGLANPGNIASYVVVTHQHST--IRRAVD 311 (352)
Q Consensus 242 ~~~~~~---~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~-----~~g~~~~~~~~~~~tvIivTHdl~~--i~~~aD 311 (352)
++.... -..+|++++|||||+|||+..+.++++.|+++. +.|. +. ..+|+++||+++. +.++||
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~-----~~-~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI-----AE-PPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC-----SS-CCEEECCTTCTTSTTHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC-----CC-CcEEEEecCcCCccCHHHHHH
Confidence 860000 000499999999999999999999999999985 2220 00 0478899999987 889999
Q ss_pred EEE-EEeCCe
Q 018638 312 RLI-FLYEGK 320 (352)
Q Consensus 312 rv~-vL~~G~ 320 (352)
+|. .|..|+
T Consensus 246 ~I~~~Lpeg~ 255 (413)
T 1tq4_A 246 KLISDLPIYK 255 (413)
T ss_dssp HHHHHSCGGG
T ss_pred HHHHhCccch
Confidence 885 454553
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-30 Score=248.21 Aligned_cols=187 Identities=17% Similarity=0.157 Sum_probs=145.8
Q ss_pred EEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC----hhhhccceEEEEe
Q 018638 98 YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLVF 173 (352)
Q Consensus 98 s~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~----~~~~~~~~ig~v~ 173 (352)
...++....++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+...... ..+..+.+|+|++
T Consensus 81 ~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~ 160 (302)
T 3b9q_A 81 LEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV 160 (302)
T ss_dssp HHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEE
Confidence 333444334567899999999999999999999999999999999999999999987643110 0111123599999
Q ss_pred cCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 174 QSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 174 Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
|++. +++.+|++||+.++... ... ..+++.+|+.+..++++.+|| |||++|||||+. +|
T Consensus 161 q~~~~~~~~~~v~e~l~~~~~~--~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~-------~P 220 (302)
T 3b9q_A 161 AEGDKAKAATVLSKAVKRGKEE--GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSG-------AP 220 (302)
T ss_dssp CC--CCCHHHHHHHHHHHHHHT--TCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTT-------CC
T ss_pred ecCCccCHHHHHHHHHHHHHHc--CCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhcc-------CC
Confidence 9998 88889999999886421 111 135677888888888999999 999999999986 69
Q ss_pred c--EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcC---------CHHHHHhhcCEEEEEeCCe
Q 018638 253 E--VLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTH---------QHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 253 ~--llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTH---------dl~~i~~~aDrv~vL~~G~ 320 (352)
+ +|+|| ||+|||+..+ +++++++ | .|+|++|| .++.+....+.|.++..|+
T Consensus 221 ~e~lLvLD-ptsglD~~~~------~~~~~~~~g----------~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge 283 (302)
T 3b9q_A 221 NEILLVLD-GNTGLNMLPQ------AREFNEVVG----------ITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 283 (302)
T ss_dssp SEEEEEEE-GGGGGGGHHH------HHHHHHHTC----------CCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CeeEEEEe-CCCCcCHHHH------HHHHHHhcC----------CCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCC
Confidence 9 99999 9999999865 3455543 4 58999999 7778888889999999997
Q ss_pred E
Q 018638 321 I 321 (352)
Q Consensus 321 i 321 (352)
.
T Consensus 284 ~ 284 (302)
T 3b9q_A 284 A 284 (302)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-29 Score=220.23 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=108.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (352)
.++|+||||||||||+|+|+|++. |.++|.+....... ..+.++||++|++ ++.+|+ +.. . ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~--~~~~~ig~~~~~~------~~~~~~-~~~--~-~~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDP--ETKKRTGFRIITT------EGKKKI-FSS--K-FF 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC--------CCEEEEEET------TCCEEE-EEE--T-TC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccc--cccceeEEEeecC------cHHHHH-HHh--h-cC
Confidence 589999999999999999999985 55666543111000 1133699999986 222332 110 0 00
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHH-----HhccCCCCCCCCcEEEEeC--CCCCCCHHHHHH
Q 018638 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS-----IIFDNTKESVEPEVLLYDE--PTAGLDPIASTV 271 (352)
Q Consensus 199 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArA-----L~~~~~~~a~~p~llLLDE--PtsgLD~~~~~~ 271 (352)
. -....++++.+||||||||++|||| |+. +|++||||| ||++||+..+..
T Consensus 65 ~----------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~-------~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 T----------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKD-------RRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp C----------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHC-------TTCEEEECCCSTTGGGCHHHHHH
T ss_pred C----------------ccccccccccCcCHHHHHHHHHHhhcccccccc-------CCCEEEEeCCCCcccCCHHHHHH
Confidence 0 0145778899999999999999996 886 699999999 999999999998
Q ss_pred HHHHHHHHHHcCCCCCCCCCCceEEEEEc---CCHHHHHhhcCEEEEEeCCeEEE
Q 018638 272 VEDLIRSVHKKGENGLANPGNIASYVVVT---HQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 272 l~~ll~~l~~~g~~~~~~~~~~~tvIivT---Hdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+.+++.+ .+ .|+|++| ||++++..+||| .+|++++
T Consensus 122 l~~~l~~---~~----------~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD---PN----------VNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC---TT----------SEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHHhc---CC----------CeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 8888865 23 4688888 599999999998 5677765
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-32 Score=262.22 Aligned_cols=208 Identities=15% Similarity=0.100 Sum_probs=150.4
Q ss_pred hhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEE
Q 018638 21 SRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKS 100 (352)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~ 100 (352)
.++..++.+. ..+.....+.+|+......|+...... . .......+|+++||+|+
T Consensus 56 ~~v~~~~~~~-----~~~~~a~~a~~ri~~~l~~~~~~~~~~-~-------------------~~~~~~~~i~~~~vs~~ 110 (305)
T 2v9p_A 56 KHVKDCATMV-----RHYLRAETQALSMPAYIKARCKLATGE-G-------------------SWKSILTFFNYQNIELI 110 (305)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHSCHHHHHHHHHHHCCSS-C-------------------CTHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccccccCCC-C-------------------cccccCCeEEEEEEEEE
Confidence 4555555555 566667777777777766543111000 0 00001125889999999
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCC
Q 018638 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180 (352)
Q Consensus 101 y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~ 180 (352)
|+ ..+|++|||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|++.+|+
T Consensus 111 y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------------------~~v~q~~~lf~ 166 (305)
T 2v9p_A 111 TF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------------------SFANHKSHFWL 166 (305)
T ss_dssp HH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE--------------------CGGGTTSGGGG
T ss_pred cC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE--------------------EEecCcccccc
Confidence 98 77999999999999999999999999999999999999 78883 46678888887
Q ss_pred CCCHHH-HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeC
Q 018638 181 SLTVRE-NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259 (352)
Q Consensus 181 ~lTV~e-ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDE 259 (352)
.|+++ ||.+... ... .+.+.++.+ |.+.++ +..|||||||| ||||++ +|+|||
T Consensus 167 -~ti~~~ni~~~~~----~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~-------~p~iLl--- 220 (305)
T 2v9p_A 167 -ASLADTRAALVDD----ATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIK-------APPLLV--- 220 (305)
T ss_dssp -GGGTTCSCEEEEE----ECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEEC-------CCCEEE---
T ss_pred -ccHHHHhhccCcc----ccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhC-------CCCEEE---
Confidence 48887 8876421 111 244555554 444444 88999999999 999997 599999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 260 PtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|++||+.++..+. . . ||+++.+ ..||+| +|++|+|++.|+++++
T Consensus 221 -Ts~LD~~~~~~i~--------~-----------l-----tH~~~~~-~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 -TSNIDVQAEDRYL--------Y-----------L-----HSRVQTF-RFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp -EESSCSTTCGGGG--------G-----------G-----TTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred -ECCCCHHHHHHHH--------H-----------H-----hCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence 9999999886664 1 1 7887765 478999 9999999999987765
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-30 Score=261.83 Aligned_cols=197 Identities=15% Similarity=0.174 Sum_probs=154.8
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE---eCCCCC---Chh
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR---KRAGLI---SDE 162 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~---~~~~~~---~~~ 162 (352)
++++++|+++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|.++|+ ++.... ...
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4588999999998 67899999 999999999999999999999999999999999999999997 332110 001
Q ss_pred hhccceEEEEecC-CCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 163 EISGLRIGLVFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 163 ~~~~~~ig~v~Q~-~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
...++.|+|++|+ ..+++.+|+.+|+.+....+... .-....+++ .+..||+|| |||+||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~--------------~~~v~~~ld-~l~~lS~g~-qrvslA--- 269 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR--------------GQHVLLIMD-SLTRYAMAQ-REIALA--- 269 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT--------------TCEEEEEEE-CHHHHHHHH-HHHHHH---
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC--------------CCCHHHHHH-hHHHHHHHH-HHHHHH---
Confidence 1123469999995 55677789999998754221100 001112222 367899999 999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CCCCCCCCCCce-----EEEEEcCCHHHHHhhcCE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK---K-GENGLANPGNIA-----SYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~---~-g~~~~~~~~~~~-----tvIivTHdl~~i~~~aDr 312 (352)
+. +|++ |+|||+..+..+.+++.++.+ + | . ||+++|||++ ..+||+
T Consensus 270 l~-------~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~G----------siT~~~tVlv~tHdl~--~~iad~ 324 (438)
T 2dpy_A 270 IG-------EPPA------TKGYPPSVFAKLPALVERAGNGIHGGG----------SITAFYTVLTEGDDQQ--DPIADS 324 (438)
T ss_dssp TT-------CCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSC----------EEEEEEEEECSSSCSC--CHHHHH
T ss_pred hC-------CCcc------cccCCHHHHHHHHHHHHHHHhccCCCC----------cccceeEEEEeCCCcc--chhhce
Confidence 43 6888 999999999999999998865 2 3 3 8999999999 678999
Q ss_pred EEEEeCCeEEEeecccccc
Q 018638 313 LIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~ 331 (352)
+++|.+|+|+.++++.++.
T Consensus 325 v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 325 ARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHSSEEEEECHHHHHTT
T ss_pred EEEEeCcEEEEeCCHHHcc
Confidence 9999999999999877653
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-28 Score=241.68 Aligned_cols=177 Identities=17% Similarity=0.161 Sum_probs=143.4
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC----hhhhccceEEEEecCCC-CCCCC
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLVFQSAA-LFDSL 182 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~----~~~~~~~~ig~v~Q~~~-l~~~l 182 (352)
..+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+..+.+|+|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 56899999999999999999999999999999999999999999988643110 01112236999999998 88889
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc--EEEEeCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE--VLLYDEP 260 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~--llLLDEP 260 (352)
|+++|+.++... ... ..+++.+|+.+..++++.+|| |||++|||||+. +|+ +|+|| |
T Consensus 228 tv~e~l~~~~~~--~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~-------~P~e~lLvLD-p 286 (359)
T 2og2_A 228 VLSKAVKRGKEE--GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSG-------APNEILLVLD-G 286 (359)
T ss_dssp HHHHHHHHHHHT--TCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTT-------CCSEEEEEEE-G
T ss_pred hHHHHHHHHHhC--CCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhc-------CCCceEEEEc-C
Confidence 999999886421 111 124667888888888899999 999999999986 699 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcC---------CHHHHHhhcCEEEEEeCCeE
Q 018638 261 TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTH---------QHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 261 tsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTH---------dl~~i~~~aDrv~vL~~G~i 321 (352)
|+|||+..+. +++.+. + .|+|++|| .++.+....+.|.++..|+.
T Consensus 287 ttglD~~~~~------~~~~~~~g----------~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 287 NTGLNMLPQA------REFNEVVG----------ITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGGHHHH------HHHHHHTC----------CCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCCHHHHH------HHHHHhcC----------CeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9999998652 445543 4 59999999 57788888899999999964
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-30 Score=238.48 Aligned_cols=189 Identities=11% Similarity=0.069 Sum_probs=120.4
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
...|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+........ ..+.+++|+||++.+|+.++
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKRE-KEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCS-SCCBTTTBEECCHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCc-ccccCCeEEECCHHHHHHhh
Confidence 34799999999999999999999999999999999999 6 99999 76653221111 11235899999987776443
Q ss_pred -HHHHHHhhhh--hcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH-----HHHHhccCCCCCCCCcEE
Q 018638 184 -VRENVGFLLY--ENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL-----ARSIIFDNTKESVEPEVL 255 (352)
Q Consensus 184 -V~eni~~~~~--~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI-----ArAL~~~~~~~a~~p~ll 255 (352)
+.+++.++.. ...+.+. ..++++++...+. ..+ .+|||||+||++| ||+|+. +|+++
T Consensus 85 ~~~~~l~~~~~~~~~~g~~~----~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~-------~~~~~ 149 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFYGTLK----SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIK-------PPSTD 149 (218)
T ss_dssp HTTCEEEEEEETTEEEEEEH----HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEE-------CSCHH
T ss_pred hccchhhhhhcccccCCCcH----HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEe-------CcCHH
Confidence 1122211100 0111122 2355666654432 222 6799999999999 899986 59999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 256 LLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
+|||||+++|..+...+.+.|.++.++-. .+.+ ...+.|+++||++++...+++++.
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~--~~h~-~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELH--EANL-LNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHH--HHTT-SCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH--hhcc-cCCCEEEECCCHHHHHHHHHHHHH
Confidence 99999999999999999888887654300 0000 004678888998888887777654
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-28 Score=228.71 Aligned_cols=149 Identities=21% Similarity=0.245 Sum_probs=98.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (352)
.++|+||||||||||+|+|+|+..|++|+|.++|+++... ..+..++|++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~-----~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT-----VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC-----CSCCEEEESCC----CCEEEEECCCC--CCSBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc-----eeeeeeEEEeecCCCcCCceEEechhhhhhcccHH
Confidence 3899999999999999999999999999999999876321 12346999999999999999999998865322211
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 018638 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (352)
Q Consensus 199 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~ 278 (352)
..+ .+.+.+. ..+.++++.+||||||||++||||++ .++++|||+.+||+.. .++++.
T Consensus 79 ~~~----~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~----------~lllldep~~gL~~lD----~~~l~~ 136 (270)
T 3sop_A 79 CWE----PIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHC----------CLYFISPTGHSLRPLD----LEFMKH 136 (270)
T ss_dssp CSH----HHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCE----------EEEEECCCSSSCCHHH----HHHHHH
T ss_pred HHH----HHHHHHH----HHHHhhhHHhcCcccchhhhhheeee----------eeEEEecCCCcCCHHH----HHHHHH
Confidence 112 2333332 45667778899999999999999985 4999999999999987 455666
Q ss_pred HHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 279 VHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 279 l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
+.+. .+||+|.|..+.
T Consensus 137 L~~~-----------~~vI~Vi~K~D~ 152 (270)
T 3sop_A 137 LSKV-----------VNIIPVIAKADT 152 (270)
T ss_dssp HHTT-----------SEEEEEETTGGG
T ss_pred HHhc-----------CcEEEEEecccc
Confidence 6544 378888777653
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-27 Score=232.10 Aligned_cols=141 Identities=16% Similarity=0.219 Sum_probs=113.2
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
++++++ | ..+++++||+|++|++++|+||||||||||+++|+|+++|++|.|+++|.+.... . . .+..+++++
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~--~-~-~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF--K-H-HKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC--S-S-CSSEEEEEC
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc--c-c-chhEEEEEe
Confidence 344444 4 4489999999999999999999999999999999999999999999998642211 1 0 122466654
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
| |||+||++|||||.. +|+
T Consensus 224 g------------------------------------------------------gg~~~r~~la~aL~~-------~p~ 242 (330)
T 2pt7_A 224 G------------------------------------------------------GNITSADCLKSCLRM-------RPD 242 (330)
T ss_dssp B------------------------------------------------------TTBCHHHHHHHHTTS-------CCS
T ss_pred C------------------------------------------------------CChhHHHHHHHHhhh-------CCC
Confidence 1 899999999999986 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+|||||||+ .++.++|+.+...+ .|+|+++|+++ +...|||+++|.+|+
T Consensus 243 ilildE~~~-------~e~~~~l~~~~~g~----------~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 243 RIILGELRS-------SEAYDFYNVLCSGH----------KGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp EEEECCCCS-------THHHHHHHHHHTTC----------CCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred EEEEcCCCh-------HHHHHHHHHHhcCC----------CEEEEEEcccH-HHHHhhhheehhcCC
Confidence 999999998 23567777775432 47999999999 667789999999885
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-29 Score=241.18 Aligned_cols=180 Identities=16% Similarity=0.145 Sum_probs=136.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEE-----------------------EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFK-----------------------IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~-----------------------i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~ 147 (352)
.|+++||++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|+.|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 589999999995 567777764 8999999999999999999999999999997553
Q ss_pred EEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCC
Q 018638 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSEL 227 (352)
Q Consensus 148 I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~L 227 (352)
.+++||+|++.+++. |+.||+.+.. ..+.+.....+.+.+.++.++ .+..+.++.+|
T Consensus 121 -------------------~~v~~v~qd~~~~~~-t~~e~~~~~~--~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~l 177 (312)
T 3aez_A 121 -------------------PRVDLVTTDGFLYPN-AELQRRNLMH--RKGFPESYNRRALMRFVTSVK-SGSDYACAPVY 177 (312)
T ss_dssp -------------------CCEEEEEGGGGBCCH-HHHHHTTCTT--CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEE
T ss_pred -------------------CeEEEEecCccCCcc-cHHHHHHHHH--hcCCChHHHHHHHHHHHHHhC-CCcccCCcccC
Confidence 158999999999987 9999986532 112222222345677888887 55566778899
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHH-
Q 018638 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI- 306 (352)
Q Consensus 228 SGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i- 306 (352)
||||+||+++|||++. +|+|||||||+..+|+.. ..+.+.- -..|+|+|+.+..
T Consensus 178 S~G~~qRv~~a~al~~-------~p~ilIlDep~~~~d~~~--------~~l~~~~----------D~~I~V~a~~~~~~ 232 (312)
T 3aez_A 178 SHLHYDIIPGAEQVVR-------HPDILILEGLNVLQTGPT--------LMVSDLF----------DFSLYVDARIEDIE 232 (312)
T ss_dssp ETTTTEEEEEEEEEEC-------SCSEEEEECTTTTCCCSS--------CCGGGGC----------SEEEEEEECHHHHH
T ss_pred ChhhhhhhhhHHHhcc-------CCCEEEECCccccCCcch--------HHHHHhc----------CcEEEEECCHHHHH
Confidence 9999999999999996 699999999999998621 1122221 1468888888764
Q ss_pred HhhcCEEEEEeCCe
Q 018638 307 RRAVDRLIFLYEGK 320 (352)
Q Consensus 307 ~~~aDrv~vL~~G~ 320 (352)
.++.+|.+.+.+|+
T Consensus 233 ~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 233 QWYVSRFLAMRTTA 246 (312)
T ss_dssp HHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHhcc
Confidence 44567766666664
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=213.31 Aligned_cols=84 Identities=29% Similarity=0.171 Sum_probs=75.1
Q ss_pred CCC-CCChHHHHHHHHHHHHh---------ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 018638 223 LPS-ELSGGMKKRVALARSII---------FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGN 292 (352)
Q Consensus 223 ~~~-~LSGGqrQRvaIArAL~---------~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~ 292 (352)
++. .||||||||++||++|+ . +|+||||||||++||+..+..+++.|.++.
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~-------~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~------------ 321 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFG-------EDPVLLLDDFTAELDPHRRQYLLDLAASVP------------ 321 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHS-------SCCEEEECCGGGCCCHHHHHHHHHHHHHSS------------
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccC-------CCCEEEEeCccccCCHHHHHHHHHHHHhcC------------
Confidence 445 79999999999999999 5 599999999999999999999999998764
Q ss_pred ceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 293 IASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 293 ~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
.|+|++||. +. .||++++|++|+|+..|+++++
T Consensus 322 -qt~i~~th~-~~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 322 -QAIVTGTEL-AP---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -EEEEEESSC-CT---TCSEEEEEETTEEEECCCTTTS
T ss_pred -cEEEEEEec-cc---cCCEEEEEECCEEEecCCHHHH
Confidence 289999994 44 7899999999999999988776
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-26 Score=250.00 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=127.0
Q ss_pred cceEEEEe-----EEEEe-CCeeeeEeeeEEEeC-------CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 89 DVLIDCRN-----VYKSF-GEKHILRGVSFKIRH-------GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 89 ~~~l~~~n-----ls~~y-~~~~~L~~vsl~i~~-------Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
..+|+++| |++.| ++..+++|++|++++ |++++|+||||||||||||+| |++.+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 45799999 99999 677899999999987 999999999999999999999 99864
Q ss_pred CCCCChhhhccceEE-EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHH
Q 018638 156 AGLISDEEISGLRIG-LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKR 234 (352)
Q Consensus 156 ~~~~~~~~~~~~~ig-~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQR 234 (352)
.. ++| ||||++. .+||.++|.. ++|+.+...+..+++|+++++
T Consensus 815 --------~a--qiG~~Vpq~~~---~l~v~d~I~~----------------------rig~~d~~~~~~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MA--QMGCYVPAEVC---RLTPIDRVFT----------------------RLGASDRIMSGESTFFVELSE- 858 (1022)
T ss_dssp --------HH--TTTCCEESSEE---EECCCSBEEE----------------------ECC---------CHHHHHHHH-
T ss_pred --------Hh--heeEEeccCcC---CCCHHHHHHH----------------------HcCCHHHHhhchhhhHHHHHH-
Confidence 01 355 9999863 3566666521 123333333455778888775
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS-TVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~-~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
+++|++++. +|+++||||||+|+|+... ..++++|+.++++ | .++|++||+++++..++|+
T Consensus 859 ~a~al~la~-------~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g----------~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 859 TASILMHAT-------AHSLVLVDELGRGTATFDGTAIANAVVKELAETIK----------CRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp HHHHHHHCC-------TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSC----------CEEEEECCCHHHHHHTSSC
T ss_pred HHHHHHhCC-------CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCC----------CEEEEEeCCHHHHHHhCCc
Confidence 999999986 6999999999999999884 5578999999876 5 5999999999999999999
Q ss_pred EEEEeCCeEE
Q 018638 313 LIFLYEGKIV 322 (352)
Q Consensus 313 v~vL~~G~iv 322 (352)
+.++ +|++.
T Consensus 922 ~~v~-~g~~~ 930 (1022)
T 2o8b_B 922 VAVR-LGHMA 930 (1022)
T ss_dssp SSEE-EEEEE
T ss_pred ceee-cCeEE
Confidence 9887 48876
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-27 Score=230.23 Aligned_cols=195 Identities=18% Similarity=0.208 Sum_probs=144.5
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCC------CChh
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL------ISDE 162 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~------~~~~ 162 (352)
++++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++.... ...
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~- 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ- 121 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH-
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh-
Confidence 4588999999998 67899999 99999999999999999999999999999999999999988752100 001
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL 241 (352)
......+.+++|.. .+..+.+...... -.+.+.+...+-+- ..-+.+..||+|| |||++|
T Consensus 122 ~~~~~~v~~~~~~~-----~~~~~r~~~~~~~----------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la--- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSD-----RPALERMKAAFTA----------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA--- 182 (347)
T ss_dssp HHHTTEEEEEECTT-----SCHHHHHHHHHHH----------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---
T ss_pred hhhhceEEEEECCC-----CCHHHHHHHHHHH----------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---
Confidence 11123578888753 2333433221100 00111111112110 1115688999999 899999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-c-CCCCCCCCCCce-----EEEEEcCCHHHHHhhcCEEE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-K-GENGLANPGNIA-----SYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~-g~~~~~~~~~~~-----tvIivTHdl~~i~~~aDrv~ 314 (352)
+. +|++ |+|||+.....+.+++.++.+ + | . ||+++|||++ ..+||+++
T Consensus 183 l~-------~p~~------t~Gldp~~~~~l~~ller~~~~~~G----------siT~~~tVl~~thdl~--~~i~d~v~ 237 (347)
T 2obl_A 183 SG-------EPDV------RGGFPPSVFSSLPKLLERAGPAPKG----------SITAIYTVLLESDNVN--DPIGDEVR 237 (347)
T ss_dssp TT-------CCCC------BTTBCHHHHHHHHHHHTTCEECSSS----------EEEEEEEEECCSSCCC--CHHHHHHH
T ss_pred cC-------CCCc------ccCCCHHHHHHHHHHHHHHhCCCCC----------CeeeEEEEEEeCCCCC--ChhhhheE
Confidence 33 5887 999999999999999999864 2 3 5 8999999999 67899999
Q ss_pred EEeCCeEEEeeccccc
Q 018638 315 FLYEGKIVWQGMTHEF 330 (352)
Q Consensus 315 vL~~G~iv~~g~~~~~ 330 (352)
+|.+|+|+.+++.++.
T Consensus 238 ~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 238 SILDGHIVLTRELAEE 253 (347)
T ss_dssp HHCSEEEEBCHHHHTT
T ss_pred EeeCcEEEEeCCHHHc
Confidence 9999999999987775
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-28 Score=250.86 Aligned_cols=182 Identities=15% Similarity=0.146 Sum_probs=129.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeE-EEeCCcEEEEEcCCCchHHHHHHH--HHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSF-KIRHGEAVGIIGPSGTGKSTILKI--IAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl-~i~~Ge~~~IiGpNGsGKSTLlk~--l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+++.+++.+.+++.++|++||| .|++|++++|+||||||||||+++ ++|+++|++|.|+++|++.. .......
T Consensus 11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~---~~~~~~~ 87 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP---QDIIKNA 87 (525)
T ss_dssp ---CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH---HHHHHHH
T ss_pred CCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH---HHHHHHH
Confidence 34666777766677889999999 999999999999999999999999 78999999999999997621 1111122
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
.++||+||++...+ |+.+ ... ...+ ...++++.+++.++.++.+.+||||
T Consensus 88 ~~~g~~~q~~~~~~------~l~~-~~~---~~~~----~~~~~l~~~~l~~~~~~~~~~LS~g---------------- 137 (525)
T 1tf7_A 88 RSFGWDLAKLVDEG------KLFI-LDA---SPDP----EGQEVVGGFDLSALIERINYAIQKY---------------- 137 (525)
T ss_dssp GGGTCCHHHHHHTT------SEEE-EEC---CCCS----SCCSCCSSHHHHHHHHHHHHHHHHH----------------
T ss_pred HHcCCChHHhhccC------cEEE-Eec---Cccc----chhhhhcccCHHHHHHHHHHHHHHc----------------
Confidence 35899999864321 1111 000 0000 0111223333333344444444443
Q ss_pred CCCCCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHH---------HhhcCE
Q 018638 247 KESVEPEVLLYDEPTA-----GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI---------RRAVDR 312 (352)
Q Consensus 247 ~~a~~p~llLLDEPts-----gLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i---------~~~aDr 312 (352)
+|+++++||||+ +||+..+..+++++++++++| +|||++||+++++ ..+||+
T Consensus 138 ----~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g----------~tvl~itH~~~~~~~~~~~~i~~~laD~ 203 (525)
T 1tf7_A 138 ----RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIG----------ATTVMTTERIEEYGPIARYGVEEFVSDN 203 (525)
T ss_dssp ----TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHT----------CEEEEEEECSSSSSCSSTTSCHHHHCSE
T ss_pred ----CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCC----------CEEEEEecCCCCccccccccceeeeeeE
Confidence 488999999998 469999999999999998877 6999999999984 566999
Q ss_pred EEEEeC
Q 018638 313 LIFLYE 318 (352)
Q Consensus 313 v~vL~~ 318 (352)
|++|++
T Consensus 204 vi~L~~ 209 (525)
T 1tf7_A 204 VVILRN 209 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999998
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-25 Score=238.11 Aligned_cols=177 Identities=28% Similarity=0.382 Sum_probs=135.3
Q ss_pred HHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCC----CC----HHHH
Q 018638 132 TILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK----MR----DEQI 203 (352)
Q Consensus 132 TLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~----~~----~~~~ 203 (352)
|...|..+.+.|..|+|+|+|+++.. +..+++.+++.|....... .. .++.
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~---------------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~ 441 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHE---------------------FTELSISEELEFLKNLNLTEREREIVGELLKEI 441 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHH---------------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHH---------------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHH
Confidence 34566677889999999999987521 2345677777663211000 00 1122
Q ss_pred HHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 018638 204 SELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 204 ~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~ 282 (352)
+...+.|..+||... +++++.+|||||||||+|||||+.+ .+|.+|||||||+|||+.....++++|++|+++
T Consensus 442 -~~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~-----p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~ 515 (916)
T 3pih_A 442 -EKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSG-----LTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL 515 (916)
T ss_dssp -HHHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTT-----CCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT
T ss_pred -HHHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhC-----CCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc
Confidence 234567888999764 7899999999999999999999973 234599999999999999999999999999877
Q ss_pred CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeecccccccCCc-HHHHHHhcCCC
Q 018638 283 GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFTSSSN-PIVQQFASGSL 346 (352)
Q Consensus 283 g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~~~~~~-~~~~~~~~~~~ 346 (352)
| .|||+||||++++.. ||+|++| ++|++++.|+++++..... ..+..++.+..
T Consensus 516 G----------~TvivVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~~l~~~~ 575 (916)
T 3pih_A 516 G----------NTVIVVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYLSGKR 575 (916)
T ss_dssp T----------CEEEEECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHSCTTCHHHHHHHSSS
T ss_pred C----------CEEEEEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcCchhcchhhhhhccc
Confidence 6 599999999998865 9999999 9999999999999765433 55666666543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-25 Score=212.72 Aligned_cols=184 Identities=17% Similarity=0.150 Sum_probs=126.4
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce-EEEECCEeCCCCCChhhhccceEEEEecCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G-~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
..+|+++++.|++|++++|+||||||||||++.|+|++.|++| .|.+.+.+. ...... .++.+++|+.. +
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~----~~~~~~-~r~~~~~~~~~----~ 92 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE----SVEETA-EDLIGLHNRVR----L 92 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS----CHHHHH-HHHHHHHTTCC----G
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC----CHHHHH-HHHHHHHcCCC----h
Confidence 3579999999999999999999999999999999999999988 775544322 222221 13444444432 1
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHH-HHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM-KKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGq-rQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
++.+++..+. .+.++..+.+.++++..++ .....+.++|.+| +||+. |+++.+ +|++||+||||
T Consensus 93 ~~~~~l~~~~-----~~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~-------~p~llilDept 157 (296)
T 1cr0_A 93 RQSDSLKREI-----IENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGL-------GCDVIILDHIS 157 (296)
T ss_dssp GGCHHHHHHH-----HHHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTT-------CCSEEEEEEEC
T ss_pred hhccccccCC-----CCHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhc-------CCCEEEEcCcc
Confidence 2334444321 1222333444555443333 2344567899999 67776 888886 69999999999
Q ss_pred C---C---CCH-HHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCH--H--------------------HHHhhcC
Q 018638 262 A---G---LDP-IASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH--S--------------------TIRRAVD 311 (352)
Q Consensus 262 s---g---LD~-~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl--~--------------------~i~~~aD 311 (352)
+ + +|. .....+.+.|++++++ | +|||++||+. + .+..+||
T Consensus 158 ~~~~~~~~~d~~~~~~~i~~~L~~la~~~~----------~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD 227 (296)
T 1cr0_A 158 IVVSASGESDERKMIDNLMTKLKGFAKSTG----------VVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD 227 (296)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHC----------CEEEEEEECC-----------------CCC---CHHHHCS
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHhC----------CeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCc
Confidence 9 5 565 6678899999999765 5 6999999995 5 7888999
Q ss_pred EEEEEeCCeE
Q 018638 312 RLIFLYEGKI 321 (352)
Q Consensus 312 rv~vL~~G~i 321 (352)
+|++|++|+.
T Consensus 228 ~vi~L~~~~~ 237 (296)
T 1cr0_A 228 TIIALERNQQ 237 (296)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEecCcc
Confidence 9999998875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-24 Score=228.01 Aligned_cols=147 Identities=27% Similarity=0.416 Sum_probs=118.7
Q ss_pred CCCCCHHHHHHhhhhhcCCCCH----------HHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 179 FDSLTVRENVGFLLYENSKMRD----------EQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~----------~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+..+||.|+++|.- .. ..+. +++.+++ +.|..+||..+ +++.+.+|||||||||+||++|..+
T Consensus 449 ~~~ltV~e~~~f~e-~l-~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~--- 522 (972)
T 2r6f_A 449 VTAMSVTEALAFFD-GL-ELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSR--- 522 (972)
T ss_dssp HHTSBHHHHHHHHH-HC-CCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTC---
T ss_pred HhhCCHHHHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhC---
Confidence 34689999999943 22 2333 3455565 46899999865 7999999999999999999999863
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeE
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKI 321 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~i 321 (352)
..|++|||||||++||+.....++++|++|++.| .|||+|+||++++. .||||++| ++|++
T Consensus 523 --~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G----------~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~i 589 (972)
T 2r6f_A 523 --LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG----------NTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEV 589 (972)
T ss_dssp --CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT----------CEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSE
T ss_pred --CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEE
Confidence 1269999999999999999999999999998776 59999999999876 69999999 79999
Q ss_pred EEeecccccccCCcHHHHHHhcC
Q 018638 322 VWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 322 v~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
++.|+++++.......+..++.+
T Consensus 590 v~~G~~~e~~~~~~slt~~~l~g 612 (972)
T 2r6f_A 590 VAAGTPEEVMNDPNSLTGQYLSG 612 (972)
T ss_dssp EEEECTTTTTTCTTCTTHHHHHT
T ss_pred EEecCHHHHHhhhHHHHHHHhcC
Confidence 99999999865333333344444
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-25 Score=226.17 Aligned_cols=172 Identities=14% Similarity=0.097 Sum_probs=133.3
Q ss_pred eEEEEeEEEEeCCeeeeEee-eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFGEKHILRGV-SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~v-sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+++++++..|++ |+.+ +..|++|++++|+||||||||||+++++|+.+|+ |+ . .+
T Consensus 257 ~~~~~~l~~g~~~---ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~------~-------------vi 313 (525)
T 1tf7_A 257 RSSNVRVSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------R-------------AI 313 (525)
T ss_dssp CCCCCEECCSCHH---HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------C-------------EE
T ss_pred ccccceeecChHH---HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC------C-------------EE
Confidence 3566777655533 2222 4499999999999999999999999999998874 43 0 14
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
.|++|++. ..+.++... .+.+. .+ +...|+..+.++.|.+|||||+||+++|+++..
T Consensus 314 ~~~~ee~~----~~l~~~~~~-----~g~~~-------~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~------ 370 (525)
T 1tf7_A 314 LFAYEESR----AQLLRNAYS-----WGMDF-------EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDF------ 370 (525)
T ss_dssp EEESSSCH----HHHHHHHHT-----TSCCH-------HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTT------
T ss_pred EEEEeCCH----HHHHHHHHH-----cCCCH-------HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhh------
Confidence 56666641 133333311 11221 12 334677778889999999999999999999986
Q ss_pred CCCcEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH----------HHHHhhcCEEE
Q 018638 250 VEPEVLLYDEPTAGLDPI-----ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH----------STIRRAVDRLI 314 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~-----~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl----------~~i~~~aDrv~ 314 (352)
+|++||+| ||++||+. .+..+.++++.+++.| .|||+|||+. ..+..+||+|+
T Consensus 371 -~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g----------~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 371 -KPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEE----------ITGLFTNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp -CCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTT----------CEEEEEEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred -CCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCC----------CEEEEEECcccccCcccccCcccceeeeEEE
Confidence 69999999 99999999 9999999999998776 6999999999 78888999999
Q ss_pred EEeCCe
Q 018638 315 FLYEGK 320 (352)
Q Consensus 315 vL~~G~ 320 (352)
+|++|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-23 Score=198.62 Aligned_cols=80 Identities=28% Similarity=0.372 Sum_probs=70.5
Q ss_pred cccCCCCCChHHHH------HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 018638 220 EDRLPSELSGGMKK------RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (352)
Q Consensus 220 ~~~~~~~LSGGqrQ------RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~ 293 (352)
.++++.+||||||| |+++|++|+. +|++|||||||++||+..+..+.++|+++.++|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~-------~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~---------- 304 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAG-------EISLLILDEPTPYLDEERRRKLITIMERYLKKI---------- 304 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTT-------TTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGS----------
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------
Confidence 46788999999999 6677788875 699999999999999999999999999987666
Q ss_pred eEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 294 ASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 294 ~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
.|||+||||.+ +..+||++++|+
T Consensus 305 ~~vi~~sH~~~-~~~~~d~~~~l~ 327 (339)
T 3qkt_A 305 PQVILVSHDEE-LKDAADHVIRIS 327 (339)
T ss_dssp SEEEEEESCGG-GGGGCSEEEEEE
T ss_pred CEEEEEEChHH-HHHhCCEEEEEE
Confidence 49999999965 577899999986
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-23 Score=214.04 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=71.3
Q ss_pred CCCCC-ChHHHHHHHHHHHHhccCCCCCCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 018638 223 LPSEL-SGGMKKRVALARSIIFDNTKESVEP--EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (352)
Q Consensus 223 ~~~~L-SGGqrQRvaIArAL~~~~~~~a~~p--~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIiv 299 (352)
++.+| ||||||||+|||||+. +| ++|||||||+|||+.++..+.++|+++++ | .|||+|
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~-------~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~----------~~vi~i 454 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVL-------GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-T----------RQVLVV 454 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHH-------CCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-H----------SEEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHh-------CCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-C----------CEEEEE
Confidence 45677 9999999999999997 58 99999999999999999999999999986 4 599999
Q ss_pred cCCHHHHHhhcCEEEEEeCCe
Q 018638 300 THQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 300 THdl~~i~~~aDrv~vL~~G~ 320 (352)
||+++.+. .|||+++|+++.
T Consensus 455 tH~~~~~~-~~d~~~~~~~~~ 474 (517)
T 4ad8_A 455 THLAQIAA-RAHHHYKVEKQV 474 (517)
T ss_dssp CCCHHHHH-HSSEEEEEECCE
T ss_pred ecCHHHHH-hCCEEEEEeccc
Confidence 99999876 699999996653
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-25 Score=204.82 Aligned_cols=170 Identities=16% Similarity=0.196 Sum_probs=107.3
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCC
Q 018638 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180 (352)
Q Consensus 101 y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~ 180 (352)
-+++.+|+||||++++|+++||+||||||||||+++|+|++ |.+.++ . .+.+++|++|+. +++
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-----------~-~~~~i~~v~~d~-~~~ 71 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-----------Q-RQRKVVILSQDR-FYK 71 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-----------G-GGCSEEEEEGGG-GBC
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-----------c-cCCceEEEeCCc-Ccc
Confidence 35677999999999999999999999999999999999976 555443 1 123699999995 677
Q ss_pred CCCHHHHHHhhhhhcCCCCHH-HHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeC
Q 018638 181 SLTVRENVGFLLYENSKMRDE-QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259 (352)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~-~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDE 259 (352)
.+|+.+|+.+....+....++ ...+.+.+.++.+ .+..++++.+||+||+||+++ ++++. +|+++|+||
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~-------~~~~lilDg 141 (245)
T 2jeo_A 72 VLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVY-------PADVVLFEG 141 (245)
T ss_dssp CCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEEC-------CCSEEEEEC
T ss_pred ccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEec-------CCCEEEEeC
Confidence 799999987754221101111 1122344455543 345567889999999999988 56664 699999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC-HHHHHhhcCEEEEEeCCe
Q 018638 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ-HSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 260 PtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd-l~~i~~~aDrv~vL~~G~ 320 (352)
|....|.. +.++ .+ .+|+++||+ ......+++++ ++|+
T Consensus 142 ~~~~~~~~--------l~~~--~~----------~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 142 ILVFYSQE--------IRDM--FH----------LRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp TTTTTSHH--------HHTT--CS----------EEEEEECCHHHHHHHHHHHHT---C---
T ss_pred ccccccHH--------HHHh--cC----------eEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 99888764 1222 13 599999997 44445555544 6664
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-23 Score=222.11 Aligned_cols=190 Identities=20% Similarity=0.217 Sum_probs=136.9
Q ss_pred CCCchHHHHHHHHHcCC---------CCCceEEEECCEeCCCCC--ChhhhccceEEEEec---CCCCCC----CCC-HH
Q 018638 125 PSGTGKSTILKIIAGLL---------APDKGEVYIRGRKRAGLI--SDEEISGLRIGLVFQ---SAALFD----SLT-VR 185 (352)
Q Consensus 125 pNGsGKSTLlk~l~Gl~---------~p~~G~I~i~G~~~~~~~--~~~~~~~~~ig~v~Q---~~~l~~----~lT-V~ 185 (352)
.+..||++|.+.+.... .|.+|+|.++|+++.... .-.+ .++++.| ++.... .++ ..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e----~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLAR----VSELLRPYAEEREPGHAERVKNRPEQ 345 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHH----HHHHHHHHHTTCSSCSTTSSSSCSSH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHH----HHHHHHhhhhhhhhcccchhhcchhh
Confidence 46679999999987743 456789999998764210 0001 1223332 221000 000 11
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCCCCCCC--cEEEEeCCCC
Q 018638 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEP--EVLLYDEPTA 262 (352)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p--~llLLDEPts 262 (352)
..+.+.+ .+++.+++. .|..+||... +++.+.+|||||||||+||++|.. +| .+|||||||+
T Consensus 346 ~~i~~~i-------~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~-------~p~~~llILDEPT~ 410 (842)
T 2vf7_A 346 AIALQRM-------AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYS-------NLFGVVYVLDEPSA 410 (842)
T ss_dssp HHHHHHH-------HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTT-------CCCSCEEEEECTTT
T ss_pred HHHHHHH-------HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhh-------CCCCeEEEeeCccc
Confidence 1222211 245666665 6889999865 799999999999999999999986 46 6999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeecccccccCCcH
Q 018638 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFTSSSNP 336 (352)
Q Consensus 263 gLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~~~~~~~ 336 (352)
+||+.....++++|++|++.| .|||+|+||++.+. .||+|++| ++|++++.|+++++......
T Consensus 411 ~Ld~~~~~~L~~~l~~L~~~G----------~TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~ 479 (842)
T 2vf7_A 411 GLHPADTEALLSALENLKRGG----------NSLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKHVPES 479 (842)
T ss_dssp TCCGGGHHHHHHHHHHHHTTT----------CEEEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTC
T ss_pred cCCHHHHHHHHHHHHHHHHcC----------CEEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHhchHH
Confidence 999999999999999998776 59999999999765 69999999 79999999999998754333
Q ss_pred HHHHHhcC
Q 018638 337 IVQQFASG 344 (352)
Q Consensus 337 ~~~~~~~~ 344 (352)
.+..++.+
T Consensus 480 ~~~~~l~~ 487 (842)
T 2vf7_A 480 QTGQYLFA 487 (842)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhh
Confidence 44444443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-25 Score=209.67 Aligned_cols=164 Identities=18% Similarity=0.236 Sum_probs=88.7
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC-CCCCceEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL-LAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 95 ~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl-~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
+||+++|+++.++++++|+| +|+||||||||||+++|+|+ ..|++| |.++|.++.. ... ...+++++
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~---t~~--~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER---TVQ--IEASTVEI 69 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC------------------------------CEEEE
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC---cce--EeeEEEEe
Confidence 48999999999999999998 99999999999999999998 889999 8888876532 111 12479999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
|...++..+||+|++.++.... ..+.....+.. +.+..++++.++|||||||+.+|||++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~---~~e~~~~l~~~------l~~~~~~~~~~~sgg~rqrv~~ara~~----------- 129 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAIN---CRDCFKTIISY------IDEQFERYLHDESGLNRRHIIDNRVHC----------- 129 (301)
T ss_dssp C---CCEEEEEEEEC--------------CTTHHHH------HHHHHHHHHHHHTSSCCTTCCCCCCCE-----------
T ss_pred cCCCcccCcchhhhhhhhhhcC---cHHHHHHHHHH------HHHHHHHHHHHhCHHhhhhhhhhhhhh-----------
Confidence 9888777889999887754211 00111111111 223456788899999999999988873
Q ss_pred EEEEeCCCCC-CCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHH
Q 018638 254 VLLYDEPTAG-LDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 254 llLLDEPtsg-LD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~ 304 (352)
+|++||||++ ||+... ++++++.++ + .++|+++||+.
T Consensus 130 ll~ldePt~~~Ld~~~~----~~l~~l~~~~~----------iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDV----AFMKAIHNKVN----------IVPVIAKADTL 168 (301)
T ss_dssp EEEEECSSSSSCCHHHH----HHHHHHTTTSC----------EEEEECCGGGS
T ss_pred eeeeecCcccCCCHHHH----HHHHHHHhcCC----------EEEEEEeCCCC
Confidence 8999999985 999863 566666543 2 68999999984
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-23 Score=187.24 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=100.7
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-------CceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-------DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-------~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~ 185 (352)
-|++|++++|+||||||||||+++|+|+..| ..|.|++++++.. .. .++++++|+..+++. |+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~-----~~i~~~~~~~~~~~~-~~~ 91 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RP-----ERIREIAQNRGLDPD-EVL 91 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CH-----HHHHHHHHHTTSCHH-HHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CH-----HHHHHHHHHcCCCHH-HHh
Confidence 6899999999999999999999999996655 4457777775421 11 136677887777664 777
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCC
Q 018638 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (352)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD 265 (352)
+|+.+... .... .+++.+..+++++........+|+++++||||+++|
T Consensus 92 ~~~~~~~~----~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 92 KHIYVARA----FNSN----------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp HTEEEEEC----CSHH----------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred hcEEEEec----CChH----------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 77654221 1111 111223333333320000013699999999999999
Q ss_pred HH-------H-----HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcC----CHHHHHhhcCEEEEEeCCe
Q 018638 266 PI-------A-----STVVEDLIRSVHKK-GENGLANPGNIASYVVVTH----QHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 266 ~~-------~-----~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTH----dl~~i~~~aDrv~vL~~G~ 320 (352)
+. . ...+++.|.++.++ | +|||+||| +-..+..+||++++|++|+
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g----------~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYD----------IAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT----------CEEEEEEECC---------CCSEEEEEEECT
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCC----------CeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 84 2 23677777777654 5 69999999 4455999999999999763
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=192.84 Aligned_cols=81 Identities=23% Similarity=0.284 Sum_probs=67.8
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC
Q 018638 223 LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 223 ~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
.+..||||||||++||++|+... ..+|+++||||||++||+..+..+.++|+++.+++ .++|+|||+
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~---~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~----------~~~ii~th~ 396 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINS---YQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPD----------LQFIVISLK 396 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHT---SSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTT----------BEEEEECSC
T ss_pred ccccCCcchHHHHHHHHHHHHhc---CCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCC----------CEEEEEECC
Confidence 34569999999999999998300 02599999999999999999999999999886444 589999999
Q ss_pred HHHHHhhcCEEEEEe
Q 018638 303 HSTIRRAVDRLIFLY 317 (352)
Q Consensus 303 l~~i~~~aDrv~vL~ 317 (352)
... ...||++++|.
T Consensus 397 ~~~-~~~~d~~~~~~ 410 (430)
T 1w1w_A 397 NTM-FEKSDALVGVY 410 (430)
T ss_dssp HHH-HTTCSEEEEEE
T ss_pred HHH-HHhCCEEEEEE
Confidence 765 45799999996
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.1e-23 Score=221.39 Aligned_cols=166 Identities=19% Similarity=0.149 Sum_probs=116.7
Q ss_pred eEEEEeEEEEe-----CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHH--------HcCCCCCceEEEECCEeCCC
Q 018638 91 LIDCRNVYKSF-----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKII--------AGLLAPDKGEVYIRGRKRAG 157 (352)
Q Consensus 91 ~l~~~nls~~y-----~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l--------~Gl~~p~~G~I~i~G~~~~~ 157 (352)
.|++++...-+ ++..+++|++|++++|++++|+||||||||||||++ .|..-|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 46666665433 235689999999999999999999999999999999 55444433211
Q ss_pred CCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH
Q 018638 158 LISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 158 ~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI 237 (352)
++++. +++.++|+. +.....+|+|++++..+
T Consensus 702 -----------~~~~d-----------------------------------~i~~~ig~~---d~l~~~lStf~~e~~~~ 732 (934)
T 3thx_A 702 -----------VSIVD-----------------------------------CILARVGAG---DSQLKGVSTFMAEMLET 732 (934)
T ss_dssp -----------EECCS-----------------------------------EEEEECC------------CHHHHHHHHH
T ss_pred -----------chHHH-----------------------------------HHHHhcCch---hhHHHhHhhhHHHHHHH
Confidence 11100 001112222 12234578888888888
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l-~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
|+++.. +.+|+++||||||+|||+.....+ +.++..++++ | .++|++||+++.+ .+||++..
T Consensus 733 a~il~~-----a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g----------~~vl~aTH~~el~-~lad~~~~ 796 (934)
T 3thx_A 733 ASILRS-----ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIG----------AFCMFATHFHELT-ALANQIPT 796 (934)
T ss_dssp HHHHHH-----CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTC----------CEEEEEESCGGGG-GGGGTCTT
T ss_pred HHHHHh-----ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC----------CEEEEEcCcHHHH-HHhcccce
Confidence 888722 137999999999999999988888 7778888764 5 5999999997765 68999999
Q ss_pred EeCCeEEEeeccccc
Q 018638 316 LYEGKIVWQGMTHEF 330 (352)
Q Consensus 316 L~~G~iv~~g~~~~~ 330 (352)
+++|++...++.+++
T Consensus 797 v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 797 VNNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEEETTEE
T ss_pred eEeeEEEEEecCCcE
Confidence 999999988876654
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-23 Score=197.87 Aligned_cols=140 Identities=16% Similarity=0.222 Sum_probs=102.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-ceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+++++|++. .+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..++
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~------~~~~~ 73 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF------KHKKS 73 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC------CCSSS
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec------CCcce
Confidence 455666542 5899999 8999999999999999999999999999998 999999886542110 00122
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
+++|. .+|++. ..| |++||+||..
T Consensus 74 ~v~q~-------------------------------------~~gl~~------~~l------~~~la~aL~~------- 97 (261)
T 2eyu_A 74 IVNQR-------------------------------------EVGEDT------KSF------ADALRAALRE------- 97 (261)
T ss_dssp EEEEE-------------------------------------EBTTTB------SCH------HHHHHHHHHH-------
T ss_pred eeeHH-------------------------------------HhCCCH------HHH------HHHHHHHHhh-------
Confidence 23221 233321 122 8999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
+|++||+|||| |+.+...+ ++. ...| .+|++++|+.+ +..+|||+++|.
T Consensus 98 ~p~illlDEp~---D~~~~~~~---l~~-~~~g----------~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 98 DPDVIFVGEMR---DLETVETA---LRA-AETG----------HLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp CCSEEEESCCC---SHHHHHHH---HHH-HHTT----------CEEEEEECCSS-HHHHHHHHHHTS
T ss_pred CCCEEEeCCCC---CHHHHHHH---HHH-HccC----------CEEEEEeCcch-HHHHHHHHhhhc
Confidence 59999999999 98886543 333 3445 58999999988 566788877664
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-24 Score=223.55 Aligned_cols=194 Identities=17% Similarity=0.181 Sum_probs=118.5
Q ss_pred ceEEEEeEEEEeCC--eeeeEee----------eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECCEeCC
Q 018638 90 VLIDCRNVYKSFGE--KHILRGV----------SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRA 156 (352)
Q Consensus 90 ~~l~~~nls~~y~~--~~~L~~v----------sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G~~~~ 156 (352)
+.++++||++.|++ +++|+.+ +|+++. +||+||||||||||+++|+|+..| ++|.|+++|.++.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 35889999999975 3355544 377765 999999999999999999999988 8999999998852
Q ss_pred CCCCh-hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHH
Q 018638 157 GLISD-EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235 (352)
Q Consensus 157 ~~~~~-~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRv 235 (352)
..... ....+.+|||+||++.+++.+||++|+.+......... .++ | ++++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~--------------~~~-----------s---~~~i 137 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG--------------MGI-----------S---HELI 137 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS--------------SCC-----------C---SCCE
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc--------------ccc-----------c---hHHH
Confidence 11000 01123369999999999999999999987532110000 011 1 1222
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-----
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEP------TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS----- 304 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEP------tsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~----- 304 (352)
.++.+... .|+++|+||| |+|||+..+..+.++++++.++.. ..+++++||+++
T Consensus 138 ~l~i~~~~-------~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~--------~iil~vvt~~~d~a~~~ 202 (608)
T 3szr_A 138 TLEISSRD-------VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE--------TISLVVVPSNVDIATTE 202 (608)
T ss_dssp EEEEEESS-------SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS--------CCEEEEEESSSCTTTCH
T ss_pred HHHhcCCC-------CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC--------CCceEEEeccchhccHH
Confidence 23333332 5999999999 999999999999999999754421 168999999976
Q ss_pred ---HHHhh----cCEEEEEeCCeEEEeecccc
Q 018638 305 ---TIRRA----VDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 305 ---~i~~~----aDrv~vL~~G~iv~~g~~~~ 329 (352)
.+..+ ...|+|+.++.++..|+.++
T Consensus 203 ~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 203 ALSMAQEVDPEGDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp HHHHHHHHCSSCCSEEEEEECGGGSSSSSTTC
T ss_pred HHHHHHHHhhcCCceEEEecchhhcCcccHHH
Confidence 33333 24588999988877775443
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-23 Score=200.91 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=110.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh----hhccceEEEEecCCCCCCCCCHHHHHHhh
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE----EISGLRIGLVFQSAALFDSLTVRENVGFL 191 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~----~~~~~~ig~v~Q~~~l~~~lTV~eni~~~ 191 (352)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....... +..+.+|+|++|++.++|.+++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999875422111 11123599999999999988999999875
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHH
Q 018638 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271 (352)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~ 271 (352)
.... .. ..+++..|+.+...+.+.+|| +||++||||++. +|+.++| .||+.+...
T Consensus 181 ~~~~--~d--------~~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~-------~P~~~lL-----vLDa~t~~~ 235 (304)
T 1rj9_A 181 KARG--YD--------LLFVDTAGRLHTKHNLMEELK---KVKRAIAKADPE-------EPKEVWL-----VLDAVTGQN 235 (304)
T ss_dssp HHHT--CS--------EEEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTT-------CCSEEEE-----EEETTBCTH
T ss_pred HhCC--CC--------EEEecCCCCCCchHHHHHHHH---HHHHHHHHhhcC-------CCCeEEE-----EEcHHHHHH
Confidence 4211 10 012334455443344445555 899999999986 5984444 455555555
Q ss_pred HHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHH
Q 018638 272 VEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 272 l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~ 304 (352)
+++.++++.+. + .|+|++||+..
T Consensus 236 ~~~~~~~~~~~~~----------~t~iivTh~d~ 259 (304)
T 1rj9_A 236 GLEQAKKFHEAVG----------LTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHC----------CSEEEEECTTS
T ss_pred HHHHHHHHHHHcC----------CcEEEEECCcc
Confidence 66677777654 5 58999999843
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-24 Score=194.22 Aligned_cols=146 Identities=19% Similarity=0.140 Sum_probs=116.9
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCC--CCCCHHHHHHhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF--DSLTVRENVGFL 191 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~--~~lTV~eni~~~ 191 (352)
.++|+++||+||||||||||+++|+|++.| +++|++|++.++ ..+|+.+++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------------------~i~~v~~d~~~~~~~~~~~~~~~~~~ 58 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------------------RVALLPMDHYYKDLGHLPLEERLRVN 58 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------------------GEEEEEGGGCBCCCTTSCHHHHHHSC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------------------CeEEEecCccccCcccccHHHhcCCC
Confidence 578999999999999999999999998865 378999998776 567999987664
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHH----HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC----
Q 018638 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM----KKRVALARSIIFDNTKESVEPEVLLYDEPTAG---- 263 (352)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGq----rQRvaIArAL~~~~~~~a~~p~llLLDEPtsg---- 263 (352)
+. .+.....+++.++++.+++.+..++++.++|+|| +||+++|++++. +|+++++||||++
T Consensus 59 ~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~-------~~~ll~~de~~~~~~d~ 127 (211)
T 3asz_A 59 YD----HPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVIL-------EGILVLYPKELRDLMDL 127 (211)
T ss_dssp TT----SGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEE-------ESTTTTSSHHHHTTCSE
T ss_pred CC----ChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEE-------eehhhccCHHHHHhcCE
Confidence 31 1111112346677888888888888899999997 478999999997 5999999999999
Q ss_pred ---CCHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEcCCHH
Q 018638 264 ---LDPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 264 ---LD~~~~~~l~~ll~~l~-~~g~~~~~~~~~~~tvIivTHdl~ 304 (352)
||+.....+.+.+.+.. ++| .|+++++|++.
T Consensus 128 ~i~ld~~~~~~~~r~l~r~~~~~g----------~t~~~~~~~~~ 162 (211)
T 3asz_A 128 KVFVDADADERFIRRLKRDVLERG----------RSLEGVVAQYL 162 (211)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHSC----------CCHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhC----------CCHHHHHHHHH
Confidence 99999999999998864 445 58899999853
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-22 Score=214.12 Aligned_cols=145 Identities=21% Similarity=0.214 Sum_probs=109.7
Q ss_pred eEEEEeEEEEe---CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-CCceEEEECCEeCCCCCChhhhcc
Q 018638 91 LIDCRNVYKSF---GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 91 ~l~~~nls~~y---~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.|++++...-. +++.+++|+||+ |++++|+||||||||||||+|+|+.. |+.|.+. . . .+
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p----a---~~ 613 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P----A---EE 613 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S----S---SE
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e----h---hc
Confidence 37777774433 446799999999 99999999999999999999999874 6777642 0 0 12
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH--hcc
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI--IFD 244 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL--~~~ 244 (352)
.++++++| +|+.+++.||+.. .+|+||+|++.+|+++ +.
T Consensus 614 ~~i~~v~~---i~~~~~~~d~l~~-----------------------------------g~S~~~~e~~~la~il~~a~- 654 (765)
T 1ewq_A 614 AHLPLFDG---IYTRIGASDDLAG-----------------------------------GKSTFMVEMEEVALILKEAT- 654 (765)
T ss_dssp EEECCCSE---EEEECCC-----------------------------------------CCSHHHHHHHHHHHHHHHCC-
T ss_pred cceeeHHH---hhccCCHHHHHHh-----------------------------------cccHHHHHHHHHHHHHHhcc-
Confidence 25888887 5666788887643 2588999999999999 64
Q ss_pred CCCCCCCCcEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 245 NTKESVEPEVLLYDEP---TAGLDPIAS-TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 245 ~~~~a~~p~llLLDEP---tsgLD~~~~-~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
+|+++||||| |++||+.+. ..+.+.|.+ .| .|+|++||+++.+. ++
T Consensus 655 ------~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g----------~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 655 ------ENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RR----------AYTLFATHYFELTA-LG 704 (765)
T ss_dssp ------TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HT----------CEEEEECCCHHHHT-CC
T ss_pred ------CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CC----------CEEEEEeCCHHHHH-hh
Confidence 6999999999 999999876 467777665 44 59999999998764 44
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-21 Score=164.50 Aligned_cols=84 Identities=27% Similarity=0.355 Sum_probs=74.4
Q ss_pred cccCCCCCChHHHHHHHHH------HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 018638 220 EDRLPSELSGGMKKRVALA------RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (352)
Q Consensus 220 ~~~~~~~LSGGqrQRvaIA------rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~ 293 (352)
.++++.+||||||||++|| |||+. +|+++||||||+|||+.++..+.+.|.++.++|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~---------- 113 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAG-------EISLLILDEPTPYLDEERRRKLITIMERYLKKI---------- 113 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHS-------SCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGS----------
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcC-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHccC----------
Confidence 5678999999999999876 89986 599999999999999999999999999987665
Q ss_pred eEEEEEcCCHHHHHhhcCEEEEE--eCCeE
Q 018638 294 ASYVVVTHQHSTIRRAVDRLIFL--YEGKI 321 (352)
Q Consensus 294 ~tvIivTHdl~~i~~~aDrv~vL--~~G~i 321 (352)
.|||+||||+ .+..+||++++| ++|..
T Consensus 114 ~tiiivsH~~-~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 114 PQVILVSHDE-ELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEESCG-GGGGGCSEEEEEEEETTEE
T ss_pred CEEEEEEChH-HHHHhCCEEEEEEcCCCeE
Confidence 5999999999 567899999999 45643
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-21 Score=209.72 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=104.6
Q ss_pred eEEEEeEEEEe-------CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECCEeCCCCCChh
Q 018638 91 LIDCRNVYKSF-------GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 91 ~l~~~nls~~y-------~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G~~~~~~~~~~ 162 (352)
.|.+++...-+ +++.+++||||++++|++++|+||||||||||||+++++.-. ..|. -+ ...
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~v----pa~ 709 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YV----PAE 709 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CB----SSS
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cc----cch
Confidence 47777665433 246799999999999999999999999999999999864311 1110 00 000
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
...++++. .+ +..+|+.+...+..+++|+||+|++.|+++ +
T Consensus 710 ---~~~i~~~d---~i--------------------------------~~~ig~~d~l~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 710 ---EATIGIVD---GI--------------------------------FTRMGAADNIYKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp ---EEEEECCS---EE--------------------------------EEEC----------CCHHHHHHHHHHHHHH-C
T ss_pred ---hhhhhHHH---HH--------------------------------HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-c
Confidence 00122110 01 122333334445567899999999999999 4
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVE-DLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~-~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
. +|++|||||||+|||+.....+. .++..+.++ | .|+|++||+++.+ .+||+
T Consensus 751 ~-------~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g----------~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 751 T-------SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK----------SLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp C-------TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC----------CEEEEECSCGGGG-GHHHH
T ss_pred c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC----------CeEEEEeCcHHHH-HHHhh
Confidence 3 69999999999999999998887 778888653 5 6999999998776 35554
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-23 Score=183.11 Aligned_cols=173 Identities=11% Similarity=0.083 Sum_probs=103.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC-----CCCceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~-----~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||+|.|+ ..++++ |.+.+|..++|+|+||||||||++.|+|.. .|+.|.+.+.+.-.. .
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~----~---- 71 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV----A---- 71 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE----E----
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe----c----
Confidence 589999999997 467888 999999999999999999999999999998 788888765332100 0
Q ss_pred cceEEEEecCCCCC----CCCC---HHHHHHhhhhhcC-----------CCCHHHHHHHHHHHHHHcCCCcc-cccCCCC
Q 018638 166 GLRIGLVFQSAALF----DSLT---VRENVGFLLYENS-----------KMRDEQISELVKENLAAVGLKGV-EDRLPSE 226 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~----~~lT---V~eni~~~~~~~~-----------~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~ 226 (352)
. .+- +.+.+.+. +... .+..+...+.... ........+.+.++++..++... ...++..
T Consensus 72 ~-~~~-l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 72 D-GKR-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADK 149 (210)
T ss_dssp T-TEE-EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred C-CEE-EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccC
Confidence 0 011 11222111 0000 1111211110000 00011222345567777787653 3667889
Q ss_pred CChHHHHH-HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 018638 227 LSGGMKKR-VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283 (352)
Q Consensus 227 LSGGqrQR-vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g 283 (352)
+|+||+|| +..+++++. +|+++++|||||++|+....++++.|.++..++
T Consensus 150 ~s~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 150 LASGARKAQLNMVREAVL-------AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp SCHHHHHHHHHHHHHHHG-------GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCchhHHHHHHHHHHHHH-------hcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 99999999 899999986 488889999999999999999999999987654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-21 Score=205.51 Aligned_cols=168 Identities=15% Similarity=0.107 Sum_probs=113.7
Q ss_pred eEEEEeEEEEe-----CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECCEeCCCCCChhhh
Q 018638 91 LIDCRNVYKSF-----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 91 ~l~~~nls~~y-----~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.|.+++...=. +++.+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..| ..+. .
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vp----a--- 642 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVP----A--- 642 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBS----S---
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccc----h---
Confidence 36666543211 456799999999 99999999999999999999999997432 222 1111 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
...++++++| +|+.+++.+|+..+ .+++|+++++...++ ..+.
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~~--------------------------------~stf~~e~~~~~~il-~~a~- 685 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLASG--------------------------------RSTFMVEMTETANIL-HNAT- 685 (800)
T ss_dssp SEEEECCCCE---EEEEEC-------------------------------------------CHHHHHHHHHHH-HHCC-
T ss_pred hcccceeHHH---HHhhCCHHHHHHhh--------------------------------hhhhhHHHHHHHHHH-Hhcc-
Confidence 1124777766 56666777766432 123566776544433 3443
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l-~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|+++|||||++|+|+.....+ .+++..++++ | .++|++||+++.+ .+||++..+.+|++.
T Consensus 686 ------~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g----------~~vl~~TH~~el~-~l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 686 ------EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK----------ALTLFATHYFELT-QLPEKMEGVANVHLD 748 (800)
T ss_dssp ------TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTC----------CEEEEECSCGGGG-GHHHHSTTEEEEEEE
T ss_pred ------CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccC----------CeEEEEeCCHHHH-HHhhhhhceEEEEEE
Confidence 6999999999999999877775 7888888874 5 5999999999875 488988778888776
Q ss_pred Eeec
Q 018638 323 WQGM 326 (352)
Q Consensus 323 ~~g~ 326 (352)
....
T Consensus 749 ~~~~ 752 (800)
T 1wb9_A 749 ALEH 752 (800)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5543
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-22 Score=176.95 Aligned_cols=168 Identities=11% Similarity=0.050 Sum_probs=114.1
Q ss_pred eeeeEeeeE-EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc--ceEEEEecCCCCCC
Q 018638 104 KHILRGVSF-KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG--LRIGLVFQSAALFD 180 (352)
Q Consensus 104 ~~~L~~vsl-~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~--~~ig~v~Q~~~l~~ 180 (352)
.+.|+++.. .+++|++++|+||||||||||++.|++...++.|.|.+.+.+.. ...... ..+++.+|+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES----RDSIIRQAKQFNWDFEEYIEK- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC----HHHHHHHHHHTTCCCGGGBTT-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC----HHHHHHHHHHhcchHHHHhhC-
Confidence 457888887 89999999999999999999999999988888888877654321 111110 0123333321100
Q ss_pred CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc--EEEEe
Q 018638 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE--VLLYD 258 (352)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~--llLLD 258 (352)
++.+ ...... .++ ..+. ....|.++.++...+.+... +|+ +|++|
T Consensus 84 ------~~~~----~~~~~~------------~~~-~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~llilD 130 (235)
T 2w0m_A 84 ------KLII----IDALMK------------EKE-DQWS---LVNLTPEELVNKVIEAKQKL-------GYGKARLVID 130 (235)
T ss_dssp ------TEEE----EECCC-----------------CTTB---CSSCCHHHHHHHHHHHHHHH-------CSSCEEEEEE
T ss_pred ------CEEE----Eecccc------------ccC-ceee---ecCCCHHHHHHHHHHHHHhh-------CCCceEEEEE
Confidence 0000 000000 001 1111 12449999888877777654 599 99999
Q ss_pred CCCCCC--CHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCH--------HHHHhhcCEEEEEeCC
Q 018638 259 EPTAGL--DPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH--------STIRRAVDRLIFLYEG 319 (352)
Q Consensus 259 EPtsgL--D~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl--------~~i~~~aDrv~vL~~G 319 (352)
|||+.+ |+.....+++.|+++.++ | .|||++||+. ..+..+||+|++|+..
T Consensus 131 e~~~~~~~d~~~~~~~~~~l~~~~~~~~----------~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 131 SVSALFLDKPAMARKISYYLKRVLNKWN----------FTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp TGGGGSSSCGGGHHHHHHHHHHHHHHTT----------EEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CchHhhcCCHHHHHHHHHHHHHHHHhCC----------CeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 999888 999999999999998755 4 7999999999 5588999999999864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-21 Score=190.73 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=110.9
Q ss_pred eeeEee-eEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCc----eE-EEECCEeCCCCCChhhhccceEEEEecCC
Q 018638 105 HILRGV-SFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDK----GE-VYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (352)
Q Consensus 105 ~~L~~v-sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~----G~-I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~ 176 (352)
..|+.+ ++.|++|++++|+||||||||||++.++++. +|++ |+ |+|++++.. .+.++++++|..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--------~~~~i~~i~q~~ 189 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--------RPERIREIAQNR 189 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--------CHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--------CHHHHHHHHHHc
Confidence 356665 6899999999999999999999999999998 7777 67 899886531 112578889988
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEE
Q 018638 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (352)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llL 256 (352)
.+++. ++.+|+.+.. ... |.+|+|++.++++++..-+....+|++||
T Consensus 190 ~~~~~-~v~~ni~~~~----~~~----------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 190 GLDPD-EVLKHIYVAR----AFN----------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp TCCHH-HHGGGEEEEE----CCS----------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred CCCHH-HHhhCEEEEe----cCC----------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 77664 7777765421 011 34566666666666631000001699999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 257 YDEPTAGLDPIA------------STVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 257 LDEPtsgLD~~~------------~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+||||+++|+.. ...++..|+++.++ + +|||+++|....+...++...+...|++++
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~----------~tvii~~h~~~~~~~~~~~~~~~~~G~~l~ 306 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD----------IAVFVTNQVQARPDAFFGDPTRPIGGHILA 306 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT----------CEEEEEEECC---------------CCCCC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC----------cEEEEEcccccccccccCCccccCCcceEe
Confidence 999999999852 35566666676654 4 699999999876654444556667777766
Q ss_pred eec
Q 018638 324 QGM 326 (352)
Q Consensus 324 ~g~ 326 (352)
.+.
T Consensus 307 ~~~ 309 (349)
T 1pzn_A 307 HSA 309 (349)
T ss_dssp TTC
T ss_pred ecC
Confidence 654
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-23 Score=183.64 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=105.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~ 196 (352)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.... .. .+.++||++|+. ... +++++. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~---~~-~~~~ig~~~~~~--~g~---~~~l~~----~- 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV---RQ-GGRRIGFDVVTL--SGT---RGPLSR----V- 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE---ET-TSSEEEEEEEET--TSC---EEEEEE----C-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh---Hh-hhceEEEEEEec--ccc---eehhhc----c-
Confidence 78999999999999999999999999 999 99999876322 11 234799999986 111 122210 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHH-HHHH---HHhccCCCCCCCCcEEEEeC--CCCCCCHHHHH
Q 018638 197 KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV-ALAR---SIIFDNTKESVEPEVLLYDE--PTAGLDPIAST 270 (352)
Q Consensus 197 ~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRv-aIAr---AL~~~~~~~a~~p~llLLDE--PtsgLD~~~~~ 270 (352)
..... ...-.+...++...+|+|||+++ ++++ |++. +|++||+|| |+..+|+...+
T Consensus 65 ~~~~~-----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~-------~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 65 GLEPP-----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGP-------GQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp CCCCC-----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSS-------CCCCEEECCCSTTTTTCSHHHH
T ss_pred cccCC-----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhcc-------CCCEEEEeCCCccccccHHHHH
Confidence 00000 00012244556678999999988 4454 4654 699999999 89999997655
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCceEEE----EEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 271 VVEDLIRSVHKKGENGLANPGNIASYV----VVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 271 ~l~~ll~~l~~~g~~~~~~~~~~~tvI----ivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
.+.+++. +. .++| .|+|+.+ ..++|||..+.+|+|+...
T Consensus 127 ~l~~~l~----~~----------~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 127 AVRQTLS----TP----------GTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHHHH----CS----------SCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred HHHHHHh----CC----------CcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 5555543 32 1444 3449874 2345666667889987754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-21 Score=194.89 Aligned_cols=166 Identities=16% Similarity=0.249 Sum_probs=100.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|+++||+++|+++.+++++||+| +|+||||||||||+++|+|+..|+.| .+|..+.. ........+
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~---~~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRI---KKTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC--------CCEEEEE
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCC---ccceeeeeE
Confidence 4699999999999989999999998 99999999999999999999986665 23322111 001112258
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
++++|+..+++.+||+||+.++.... .....+.+.+.++ ..++.+++||++|||+++.
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~----~~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~------ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD----NSNCWQPVIDYID------------SKFEDYLNAESRVNRRQMP------ 135 (418)
T ss_dssp ECC------CEEEEEEECC---------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCC------
T ss_pred EEEEecCCcccceeeeechhhhhhcc----chhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhcc------
Confidence 99999988888899999998764311 1111111222221 1355677889999999986
Q ss_pred CCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 250 VEPE---VLLYDEPT-AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 250 ~~p~---llLLDEPt-sgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
+|+ +|++|||| .+||+... ++++++.. + .++|+|.|..+.
T Consensus 136 -d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~----------v~iIlVinK~Dl 179 (418)
T 2qag_C 136 -DNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-K----------VNIIPLIAKADT 179 (418)
T ss_dssp -CC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-T----------SEEEEEEESTTS
T ss_pred -CCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-c----------CcEEEEEEcccC
Confidence 599 99999999 69998763 44555543 3 467777776553
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-23 Score=203.84 Aligned_cols=180 Identities=13% Similarity=0.155 Sum_probs=120.3
Q ss_pred eeEeeeEEEeC--CcEEEEEcCCCchHHHHHHHHHcCCCCCc----eEEEEC----CEeCCCCCChhhhccceEEEEecC
Q 018638 106 ILRGVSFKIRH--GEAVGIIGPSGTGKSTILKIIAGLLAPDK----GEVYIR----GRKRAGLISDEEISGLRIGLVFQS 175 (352)
Q Consensus 106 ~L~~vsl~i~~--Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~----G~I~i~----G~~~~~~~~~~~~~~~~ig~v~Q~ 175 (352)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+++|++ |+|+++ |.+. .. ..... .+|++++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~-~~~~~--~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AM-QYSDY--PQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SS-CTTTH--HHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cC-ChhHH--HHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 888764 3222 11 11111 135555555
Q ss_pred CCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEE
Q 018638 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255 (352)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ll 255 (352)
+.++. .|+.+||.+.. . +..++.+..+|+|++||..+++++.. .+|+++
T Consensus 233 ~~~~~-~t~~~nl~~~~-----~-------------------~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~ll 281 (365)
T 1lw7_A 233 YIDYA-VRHSHKIAFID-----T-------------------DFITTQAFCIQYEGKAHPFLDSMIKE------YPFDVT 281 (365)
T ss_dssp HHHHH-HHHCSSEEEES-----S-------------------CHHHHHHHHHHHHSCCCHHHHHHHHH------SCCSEE
T ss_pred HHHHH-HhccCCEEEEe-----C-------------------CchHHHHHHHHHcCCCCHHHHHHHhh------cCCCEE
Confidence 44332 34455543311 0 11111223456777888888888753 269999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 256 LYDE---PT------AGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 256 LLDE---Pt------sgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|||| |+ .++|+..+..+.+.|.++.++ + .+||+++|. ....++++++.++++ ++..+
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~----------~~ililde~-~~~~r~~~~i~~i~~--~l~~~ 348 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYK----------VPYIEIESP-SYLDRYNQVKAVIEK--VLNEE 348 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGG----------CCCEEEECS-SHHHHHHHHHHHHHH--HTSCC
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcC----------CCEEEeCCC-CHHHHHHHHHHHHHH--Hhccc
Confidence 9999 65 589999999999999998653 4 589999975 566778888877765 55566
Q ss_pred cccccccC
Q 018638 326 MTHEFTSS 333 (352)
Q Consensus 326 ~~~~~~~~ 333 (352)
+++++...
T Consensus 349 ~~~~~~~~ 356 (365)
T 1lw7_A 349 EISELQNT 356 (365)
T ss_dssp CCSSCCC-
T ss_pred chhHhhcC
Confidence 67776543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=161.64 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=106.0
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
.+++|++++|+||||||||||++.+++.+. .|+++ .|.+.. ...++.|+..+... ..+.+.+.. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~--------~~~~v~~~~~e~~~---~~~~~r~~~-~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGEL--------PTGPVIYLPAEDPP---TAIHHRLHA-L 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCC--------CCCCEEEEESSSCH---HHHHHHHHH-H
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccC--------CCccEEEEECCCCH---HHHHHHHHH-H
Confidence 378999999999999999999999998664 57663 354321 01247787654321 012222211 1
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC--CCCHHHH-
Q 018638 193 YENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA--GLDPIAS- 269 (352)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts--gLD~~~~- 269 (352)
...... ....++++.+++.+..++.+..||+||+|++ ++++. +|++||+||||+ ++|+...
T Consensus 91 --g~~~~~----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~-------~~~livlDe~~~~~~~d~~~~~ 154 (279)
T 1nlf_A 91 --GAHLSA----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAE-------GRRLMVLDTLRRFHIEEENASG 154 (279)
T ss_dssp --HTTSCH----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHT-------TCSEEEEECGGGGCCSCTTCHH
T ss_pred --HhhcCh----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcC-------CCCEEEECCHHHhcCCCcCchH
Confidence 111222 2245678888888888889999999998865 67775 599999999999 9997544
Q ss_pred --HHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 270 --TVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 270 --~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
..+++.|+++.+ .| +|||+++|+.....
T Consensus 155 ~~~~~~~~L~~l~~~~g----------~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTG----------CSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHHHHHHHHHHC----------CEEEEEEEC-----
T ss_pred HHHHHHHHHHHHHHHcC----------CEEEEEecCCCccc
Confidence 788888888864 45 69999999987654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-20 Score=179.72 Aligned_cols=135 Identities=21% Similarity=0.260 Sum_probs=95.1
Q ss_pred eeeEeeeE-------EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-ceEEEECCEeCCCCCChhhhccceEEEEecCC
Q 018638 105 HILRGVSF-------KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (352)
Q Consensus 105 ~~L~~vsl-------~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~ 176 (352)
..|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|...+ +..... .....++++|..
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~-----~~~~~~~v~q~~ 177 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV-----HESKKCLVNQRE 177 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC-----CCCSSSEEEEEE
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh-----hhccccceeeee
Confidence 45666665 67889999999999999999999999999997 56665433 322111 111245666654
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEE
Q 018638 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (352)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llL 256 (352)
......+..+ +||+||.+ +|++||
T Consensus 178 ~~~~~~~~~~-------------------------------------------------~La~aL~~-------~Pdvil 201 (356)
T 3jvv_A 178 VHRDTLGFSE-------------------------------------------------ALRSALRE-------DPDIIL 201 (356)
T ss_dssp BTTTBSCHHH-------------------------------------------------HHHHHTTS-------CCSEEE
T ss_pred eccccCCHHH-------------------------------------------------HHHHHhhh-------CcCEEe
Confidence 3222222211 99999996 699999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 257 YDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 257 LDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
+|||| |++. .+.+.++...| .+||+++|+.+.+ .++||++.|..|
T Consensus 202 lDEp~---d~e~----~~~~~~~~~~G----------~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 202 VGEMR---DLET----IRLALTAAETG----------HLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp ESCCC---SHHH----HHHHHHHHHTT----------CEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred cCCCC---CHHH----HHHHHHHHhcC----------CEEEEEEccChHH-HHHHHHhhhcCc
Confidence 99999 6555 34444455666 5899999999988 678999888543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-20 Score=187.19 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=116.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcE--EEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~--~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|++++ +++|++.+ |++|||+|++|++ ++|+||||||||||+|+|+|+. ++|.++....... ....
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~--~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGV--QLQS 83 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSC--EEEE
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccc--eEee
Confidence 477778 89999887 9999999999999 9999999999999999999984 3444432211111 1236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCC----HHHHHHHHHHHHHHc-CCCc----ccccCC-----------CCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMR----DEQISELVKENLAAV-GLKG----VEDRLP-----------SELS 228 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~----~~~~~~~v~~~l~~~-gL~~----~~~~~~-----------~~LS 228 (352)
++|++|++.+++.+||.||+.|+........ .+.+.+.+.+++... ++.. ..+.++ ..|+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 9999999998888999999977542100000 012233445555554 4431 122221 2566
Q ss_pred hHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCCCCCCCCCceEEEEEcCC
Q 018638 229 GGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS-VHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 229 GGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~-l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
-.+ +.|+++|.. ++++|++|||+..|.+.....+.+.+++ |...| .+|+.++.|
T Consensus 164 ~~D---ieilk~L~~-------~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~g----------i~I~~is~~ 218 (427)
T 2qag_B 164 SLD---LVTMKKLDS-------KVNIIPIIAKADAISKSELTKFKIKITSELVSNG----------VQIYQFPTD 218 (427)
T ss_dssp HHH---HHHHHHTCS-------CSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTB----------CCCCCCC--
T ss_pred HHH---HHHHHHHhh-------CCCEEEEEcchhccchHHHHHHHHHHHHHHHHcC----------CcEEecCCC
Confidence 555 789999974 6999999999999999999899888886 76665 578888865
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-22 Score=191.58 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=123.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--hhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~~~~~~ 168 (352)
+|+++|+++.|+.+.+|+++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.|.++....... ...+.+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 478889999998788999999999999999999999999999999999999999999999998864321100 011235
Q ss_pred EEEEecCCCCCCCCC------------HHHHHHh-----------------------------hhhhcCCCCHHHH---H
Q 018638 169 IGLVFQSAALFDSLT------------VRENVGF-----------------------------LLYENSKMRDEQI---S 204 (352)
Q Consensus 169 ig~v~Q~~~l~~~lT------------V~eni~~-----------------------------~~~~~~~~~~~~~---~ 204 (352)
++|++|++.+|...+ +.|.+.. .+.........+. .
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 899999988775321 2332211 0000000000110 0
Q ss_pred HHHHHHHHHcCCCccccc-CCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 018638 205 ELVKENLAAVGLKGVEDR-LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK 281 (352)
Q Consensus 205 ~~v~~~l~~~gL~~~~~~-~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~ 281 (352)
+.+.+....+.+ ...|. ...++|+|++|++..|++++.... ....|++++ ||++|.....++++.|.++..
T Consensus 189 ~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~-~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 189 KGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPS-ATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSB-TTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccc-cCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 111122222222 33342 235689999999999999885100 000378776 999999999999999988754
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=145.92 Aligned_cols=86 Identities=27% Similarity=0.367 Sum_probs=70.6
Q ss_pred cccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 018638 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (352)
Q Consensus 220 ~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIiv 299 (352)
..+.+..||||||||++|||+|+..+ ..+|+++||||||++||+.++..+.++|+++.++ .++|+|
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~---~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-----------~~~ivi 123 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQK---FKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-----------SQFIVI 123 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHH---HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-----------SEEEEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcc---cCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-----------CEEEEE
Confidence 45667899999999999999997410 0136999999999999999999999999998654 389999
Q ss_pred cCCHHHHHhhcCEEEEE--eCCe
Q 018638 300 THQHSTIRRAVDRLIFL--YEGK 320 (352)
Q Consensus 300 THdl~~i~~~aDrv~vL--~~G~ 320 (352)
||+.... .+||+++.+ .+|.
T Consensus 124 th~~~~~-~~ad~i~~v~~~~g~ 145 (173)
T 3kta_B 124 TLRDVMM-ANADKIIGVSMRDGV 145 (173)
T ss_dssp CSCHHHH-TTCSEEEEEEEETTE
T ss_pred EecHHHH-HhCCEEEEEEecCCE
Confidence 9998764 679999865 4664
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-21 Score=168.67 Aligned_cols=141 Identities=17% Similarity=0.106 Sum_probs=93.8
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
.+++|++++|+||||||||||+++|+|+ |+.|.|.++|.++.... ..+..++|++|+.. +.++|.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~----~~~~~~~~~~~~~~--~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI----KHGRIDPWLPQSHQ--QNRMIMQIAADVA 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC----CSSCCCTTSSSHHH--HHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh----hcccccCCccchhh--hhHHHHHHHHHHH
Confidence 5789999999999999999999999998 78999999987542111 01123577777644 3468899987643
Q ss_pred hhc--CCCCHHHHHHHHHHHHHHcCCCccc--ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHH
Q 018638 193 YEN--SKMRDEQISELVKENLAAVGLKGVE--DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (352)
Q Consensus 193 ~~~--~~~~~~~~~~~v~~~l~~~gL~~~~--~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~ 268 (352)
... .+... .++.++..+++..+. +..+..+|+|++||+++||++.. +|+++ +|+..
T Consensus 77 ~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r-------~~~~l--------ld~~~ 136 (191)
T 1zp6_A 77 GRYAKEGYFV-----ILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR-------GGDSL--------SDPLV 136 (191)
T ss_dssp HHHHHTSCEE-----EECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTT-------CTTSC--------CCHHH
T ss_pred HHHhccCCeE-----EEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhc-------CCCcc--------CCHHH
Confidence 211 00000 001111112232222 44567899999999999999986 47765 68888
Q ss_pred HHHHHHHHHHHHH
Q 018638 269 STVVEDLIRSVHK 281 (352)
Q Consensus 269 ~~~l~~ll~~l~~ 281 (352)
...+.+.+..+..
T Consensus 137 ~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 137 VADLHSQFADLGA 149 (191)
T ss_dssp HHHHHHHTTCCGG
T ss_pred HHHHHHHHhccCc
Confidence 8777777766543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-20 Score=190.14 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=110.7
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC----hhhhccceEEEEecCCCCCCCC
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~----~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+...... ..+..+.+|+|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999999999999998776532100 0111234699999999888888
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC-cEEEEeCCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP-EVLLYDEPT 261 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p-~llLLDEPt 261 (352)
+|++|+.++.... .+ .+ +++..|.......++.+| +|++.++|++.. ..| ++||...|+
T Consensus 363 tV~e~l~~a~~~~--~D------vV--LIDTaGrl~~~~~lm~EL----~kiv~iar~l~~------~~P~evLLvLDat 422 (503)
T 2yhs_A 363 VIFDAIQAAKARN--ID------VL--IADTAGRLQNKSHLMEEL----KKIVRVMKKLDV------EAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHHTT--CS------EE--EECCCCSCCCHHHHHHHH----HHHHHHHHTTCT------TCSSEEEEEEEGG
T ss_pred HHHHHHHHHHhcC--CC------EE--EEeCCCccchhhhHHHHH----HHHHHHHHHhcc------CCCCeeEEEecCc
Confidence 9999998865321 11 00 123333322222222333 488999998753 246 466666688
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHH
Q 018638 262 AGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 262 sgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
+|.|.. +.++.+++. + .|.|++|| ++.
T Consensus 423 tGq~al------~~ak~f~~~~~----------itgvIlTK-LD~ 450 (503)
T 2yhs_A 423 TGQNAV------SQAKLFHEAVG----------LTGITLTK-LDG 450 (503)
T ss_dssp GTHHHH------HHHHHHHHHTC----------CSEEEEEC-GGG
T ss_pred ccHHHH------HHHHHHHhhcC----------CCEEEEEc-CCC
Confidence 886554 334555543 3 58899999 444
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-21 Score=167.76 Aligned_cols=172 Identities=14% Similarity=0.054 Sum_probs=111.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~ 196 (352)
|++++|+||||||||||+++|++ |.+|.|+++|.++.. ...+++++|....++..++++|+.+....+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH--------MVVGGYRPPWESDELLALTWKNITDLTVNFL 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT--------TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh--------hhccccccCccchhHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999998 678999999865421 1135677776544445678888866432110
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccCCCCC--ChHHHHHHHHHH------HHhccCCCCCCCCcEEEEeCCCCCCCHHH
Q 018638 197 KMRDEQISELVKENLAAVGLKGVEDRLPSEL--SGGMKKRVALAR------SIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (352)
Q Consensus 197 ~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~L--SGGqrQRvaIAr------AL~~~~~~~a~~p~llLLDEPtsgLD~~~ 268 (352)
.... ..+++.+. .....+...++ |+||+|++.++. +++. +|+...+|+ +||+..
T Consensus 71 ~~~~-------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~-------R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 71 LAQN-------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR-------RDALRKKDE---QMGERC 132 (189)
T ss_dssp HTTC-------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHH-------HTTTSCC-------CGGG
T ss_pred hcCC-------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHH-------HHHhccccc---cCCHHH
Confidence 0000 00011110 00000111234 889988888887 7876 477777784 899988
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC-HHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ-HSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 269 ~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd-l~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
... ++.+..+.+.+ .++|.+||. ++.+.++||+|+ ++|+++.+|+++-+
T Consensus 133 ~~~-~~~~~~~~~~~----------~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 133 LEL-VEEFESKGIDE----------RYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GHH-HHHHHHTTCCT----------TSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHH-HHHHhhcCCCc----------cEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 877 78887775443 489999999 999999999998 99999999977554
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-20 Score=172.75 Aligned_cols=146 Identities=20% Similarity=0.193 Sum_probs=106.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHH---cCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIA---GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~---Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
++++++|+||||||||||+++|+ |+..|++|+|.++|.+.. .. . ...+++++|+..+++..++.+++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~---~~--~-~~~i~~~~~~~~~~~~~~v~~~l~~~l 99 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS---TE--V-GEMAKQYIEKSLLVPDHVITRLMMSEL 99 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT---CH--H-HHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC---Ch--H-HHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999 999999999998875421 11 1 123567788888888889999997754
Q ss_pred hh-------cCCCCHHHHHHHHHHHH--HHcC------------CCcccccCCCCCChHHHHHHHHHHHH-hccCCCCCC
Q 018638 193 YE-------NSKMRDEQISELVKENL--AAVG------------LKGVEDRLPSELSGGMKKRVALARSI-IFDNTKESV 250 (352)
Q Consensus 193 ~~-------~~~~~~~~~~~~v~~~l--~~~g------------L~~~~~~~~~~LSGGqrQRvaIArAL-~~~~~~~a~ 250 (352)
.. ..+..... ..+..+. ..++ +....++++.+||| |+ +|+ +.
T Consensus 100 ~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~------- 163 (246)
T 2bbw_A 100 ENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN------- 163 (246)
T ss_dssp HTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS-------
T ss_pred HhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC-------
Confidence 21 11111111 1122222 1233 33445778899999 66 677 54
Q ss_pred CCcEEEEe----CCCCCCCHHHHHHHHHHHHHHHHcC
Q 018638 251 EPEVLLYD----EPTAGLDPIASTVVEDLIRSVHKKG 283 (352)
Q Consensus 251 ~p~llLLD----EPtsgLD~~~~~~l~~ll~~l~~~g 283 (352)
+|++++|| |||++||+.++..+.+.|+++.+++
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 79999999 9999999999999999999987653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-17 Score=147.98 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=99.0
Q ss_pred eeeEeeeE-EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 105 HILRGVSF-KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 105 ~~L~~vsl-~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
+.|+.+.. -+++|++++|+||||||||||++.+++ .+..+.++++ .+..+ +...
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~----------------------~~~~~-~~~~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVD----------------------TEGGF-SPER 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEE----------------------SSCCC-CHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEE----------------------CCCCC-CHHH
Confidence 34566654 689999999999999999999999999 3222333332 22111 1001
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHH--HHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM--KKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGq--rQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
+.+.. ...+...+ ++++.+ .+.++|+++ +|+++.+++++.+ +|+++|+||||
T Consensus 62 ~~~~~-----~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~------~~~lliiD~~~ 115 (220)
T 2cvh_A 62 LVQMA-----ETRGLNPE-------EALSRF--------ILFTPSDFKEQRRVIGSLKKTVDS------NFALVVVDSIT 115 (220)
T ss_dssp HHHHH-----HTTTCCHH-------HHHHHE--------EEECCTTTSHHHHHHHHHHHHCCT------TEEEEEEECCC
T ss_pred HHHHH-----HhcCCChH-------HHhhcE--------EEEecCCHHHHHHHHHHHHHHhhc------CCCEEEEcCcH
Confidence 11111 01112211 122222 223445554 5688888899851 49999999999
Q ss_pred CCCCHHH--------HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHH-------------HHHhhcCEEEEEeCC
Q 018638 262 AGLDPIA--------STVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS-------------TIRRAVDRLIFLYEG 319 (352)
Q Consensus 262 sgLD~~~--------~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~-------------~i~~~aDrv~vL~~G 319 (352)
+.+|+.. ...+.+.|+++.++ + .|||+++|... .+..+||+|++|+..
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~----------~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 116 AHYRAEENRSGLIAELSRQLQVLLWIARKHN----------IPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCTTGGGGSSTTHHHHHHHHHHHHHHHHHHT----------CCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHhhhcCchHHHHHHHHHHHHHHHHHHHHcC----------CEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9999743 24455667777654 5 58999999876 577899999999864
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-20 Score=161.74 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=76.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
++.+|+++.|+++.++++|||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.. .... + + +
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~---~~~~-~-~--~ 79 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE---EYNI-A-G--K 79 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE---EEEE-T-T--E
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee---eccC-C-C--c
Confidence 34456788888888999999999999999999999999999999999999 999999999976531 1111 1 2 7
Q ss_pred EecCCCCCCCCCHHHHHHh-hh
Q 018638 172 VFQSAALFDSLTVRENVGF-LL 192 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~-~~ 192 (352)
+||++.+| .+||.||+.+ ++
T Consensus 80 ~~q~~~l~-~ltv~e~l~~~g~ 100 (158)
T 1htw_A 80 MIYHFDLY-RLADPEELEFMGI 100 (158)
T ss_dssp EEEEEECT-TCSCTTHHHHSTH
T ss_pred ceeccccc-cCCcHHHHHHcCh
Confidence 99999888 7999999954 44
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-18 Score=166.70 Aligned_cols=169 Identities=14% Similarity=0.111 Sum_probs=117.8
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh----hccceEEEEecCCCCCCCCCHHHHH
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE----ISGLRIGLVFQSAALFDSLTVRENV 188 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~----~~~~~ig~v~Q~~~l~~~lTV~eni 188 (352)
..++|++++|+||||||||||+++|+|+++|++|+|.+.|.++........ ..+..+.|++|...++|.++|++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 347899999999999999999999999999999999999998754321111 1223477999999999999999999
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHH
Q 018638 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (352)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~ 268 (352)
.++...... . -+++..|+.+.....+.+|| .++|++.. ++.+++||.++.
T Consensus 205 ~~~~~~~~d--~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~-------de~llvLDa~t~------ 254 (328)
T 3e70_C 205 QHAKARGID--V--------VLIDTAGRSETNRNLMDEMK-------KIARVTKP-------NLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHTCS--E--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCC-------SEEEEEEEGGGT------
T ss_pred HHHHhccch--h--------hHHhhccchhHHHHHHHHHH-------HHHHHhcC-------CCCEEEEecHHH------
Confidence 876432110 0 01333454444444444554 38899974 578888996554
Q ss_pred HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCH---------HHHHhhcCEEEEEeCCeEE
Q 018638 269 STVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH---------STIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 269 ~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl---------~~i~~~aDrv~vL~~G~iv 322 (352)
..+.+.++.+.+. + .|+|++||.- +.+....-.|.++..|+-+
T Consensus 255 -~~~~~~~~~~~~~~~----------it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 255 -NAIVEQARQFNEAVK----------IDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp -THHHHHHHHHHHHSC----------CCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred -HHHHHHHHHHHHhcC----------CCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 3455666777654 4 5899999943 2344555678888888654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.8e-19 Score=161.21 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=96.5
Q ss_pred eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCH----
Q 018638 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV---- 184 (352)
Q Consensus 111 sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p--~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV---- 184 (352)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... . .+.+++|+||++.+|+.+++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~--e~~gi~y~fq~~~~f~~~~~~~~f 83 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----G--EVHGEHYFFVNHDEFKEMISRDAF 83 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----T--CCBTTTBEECCHHHHHHHHHTTCE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----c--cccCceEEECCHHHHHHHHhcCHH
Confidence 346789999999999999999999999999986 68999988765321 1 12258999998776665555
Q ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCC
Q 018638 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264 (352)
Q Consensus 185 ~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgL 264 (352)
.||+.+... +.|-.+++ +..++- .++++||| |
T Consensus 84 ~E~~~~~~~---------------------------------~yg~~~~~--v~~~l~--------~G~illLD-----L 115 (219)
T 1s96_A 84 LEHAEVFGN---------------------------------YYGTSREA--IEQVLA--------TGVDVFLD-----I 115 (219)
T ss_dssp EEEEEETTE---------------------------------EEEEEHHH--HHHHHT--------TTCEEEEE-----C
T ss_pred HHHHHHHhc---------------------------------cCCCCHHH--HHHHHh--------cCCeEEEE-----E
Confidence 333322100 00000111 223332 37999999 9
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 265 D~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+..+..+.+.+. ++ .||+++||+++.+.+ |+ +.+| .++++++
T Consensus 116 D~~~~~~i~~~l~----~~----------~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i 158 (219)
T 1s96_A 116 DWQGAQQIRQKMP----HA----------RSIFILPPSKIELDR---RL--RGRG----QDSEEVI 158 (219)
T ss_dssp CHHHHHHHHHHCT----TC----------EEEEEECSSHHHHHH---HH--HTTS----CSCHHHH
T ss_pred CHHHHHHHHHHcc----CC----------EEEEEECCCHHHHHH---HH--HHcC----CCCHHHH
Confidence 9999999998875 44 699999999998875 43 6677 4555554
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-18 Score=165.80 Aligned_cols=123 Identities=24% Similarity=0.188 Sum_probs=94.3
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-CCceEEEEC-CEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIR-GRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-p~~G~I~i~-G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
-++++++. .+|++++|+||||||||||+|+|+|+.. |++|+|.++ |+.... ....++++++|+..+++..+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t------t~~~~i~~v~q~~~l~dtpg 277 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT------TTAARLYHFPHGGDVIDSPG 277 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------------CCCEEEECTTSCEEEECHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc------eEEEEEEEECCCCEecCccc
Confidence 35667765 4799999999999999999999999999 999999987 754321 12336999999999988888
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
|+++ ++ ...+.++..+.+.++++.+|+..+.++.+.+|| ||+||++||++++
T Consensus 278 v~e~---~l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 278 VREF---GL---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HHTC---CC---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHHh---hh---cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 8884 22 124566667778889999999999999999999 9999999999886
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.8e-19 Score=171.60 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=109.3
Q ss_pred EEEeEEEE---eCC--eeee---------EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCC
Q 018638 93 DCRNVYKS---FGE--KHIL---------RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158 (352)
Q Consensus 93 ~~~nls~~---y~~--~~~L---------~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~ 158 (352)
++++++|+ |+. ..+| +++||+|++|++++|+||||||||||+++|+|+++|++|.|+++|.. ..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence 67788877 753 3455 99999999999999999999999999999999999999999999753 11
Q ss_pred CChhhhccceEEEEe-cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH
Q 018638 159 ISDEEISGLRIGLVF-QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 159 ~~~~~~~~~~ig~v~-Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI 237 (352)
.... .+.+++|++ |++.+ .++++..+|..|
T Consensus 215 ~~~~--~~~~v~~v~~q~~~~-----------------------------------------------~~~~~~t~~~~i 245 (361)
T 2gza_A 215 FLPD--HPNHVHLFYPSEAKE-----------------------------------------------EENAPVTAATLL 245 (361)
T ss_dssp CCTT--CSSEEEEECC---------------------------------------------------------CCHHHHH
T ss_pred Cccc--cCCEEEEeecCcccc-----------------------------------------------ccccccCHHHHH
Confidence 1111 233689999 65431 012233467778
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
+.++.. +|+.+++||+.. .++.+.|+.+.. |. .|++.++|..+ +...+||++.|.
T Consensus 246 ~~~l~~-------~pd~~l~~e~r~-------~~~~~~l~~l~~-g~---------~~~l~t~H~~~-~~~~~~Rl~~l~ 300 (361)
T 2gza_A 246 RSCLRM-------KPTRILLAELRG-------GEAYDFINVAAS-GH---------GGSITSCHAGS-CELTFERLALMV 300 (361)
T ss_dssp HHHTTS-------CCSEEEESCCCS-------THHHHHHHHHHT-TC---------CSCEEEEECSS-HHHHHHHHHHHH
T ss_pred HHHHhc-------CCCEEEEcCchH-------HHHHHHHHHHhc-CC---------CeEEEEECCCC-HHHHHHHHHHHH
Confidence 888864 699999999986 245566776643 32 37899999966 667789988887
Q ss_pred CCe
Q 018638 318 EGK 320 (352)
Q Consensus 318 ~G~ 320 (352)
.|.
T Consensus 301 ~~~ 303 (361)
T 2gza_A 301 LQN 303 (361)
T ss_dssp TTS
T ss_pred hcc
Confidence 763
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-20 Score=176.66 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=107.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC--------CCCceEEEECCEeCCCCCC--------------hhhhccceEEEE---
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL--------APDKGEVYIRGRKRAGLIS--------------DEEISGLRIGLV--- 172 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~--------~p~~G~I~i~G~~~~~~~~--------------~~~~~~~~ig~v--- 172 (352)
++++|+|+||||||||+|+|+|+. .|+.|+|.++|.++..... .... ...++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~-~~~l~~l~~~ 83 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNEL-EDALLDLLDN 83 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCH-HHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHH-HHHHHHHHhH
Confidence 689999999999999999999997 7899999999998754311 0111 1247777
Q ss_pred ecCCCCCCCCCHHHHHHhhhhhc--CCC-CHHHHH--HHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 173 FQSAALFDSLTVRENVGFLLYEN--SKM-RDEQIS--ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~--~~~-~~~~~~--~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|++.+++..++.||+.++.... ... ...... ..+..++..+++..+.++.+ +||+||+||+..+++++.
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~---- 158 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLT---- 158 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEE----
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEE----
Confidence 68877666778888876531000 000 000000 01112233445555544444 799999999998888886
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~ 309 (352)
+|+++ ||| ..+.+.|++++ .+ .+|+++||+...+..+
T Consensus 159 ---k~dl~--de~---------~~l~~~l~~l~-~~----------~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 159 ---KTDVA--GEA---------EKLHERLARIN-AR----------APVYTVTHGDIDLGLL 195 (318)
T ss_dssp ---CTTTC--SCT---------HHHHHHHHHHC-SS----------SCEEECCSSCCCGGGG
T ss_pred ---CcccC--CHH---------HHHHHHHHHhC-CC----------CeEEEecccCCCHHHH
Confidence 58877 998 67788888774 33 5899999965444433
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-18 Score=165.03 Aligned_cols=123 Identities=20% Similarity=0.098 Sum_probs=88.0
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE---CCEeCCCCCChhhhccceEEEEecCCCCC-----CCCCH
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI---RGRKRAGLISDEEISGLRIGLVFQSAALF-----DSLTV 184 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i---~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~-----~~lTV 184 (352)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|++..... ......++|||+|+|.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 45579999999999999999999999 99999999999 898764321 111112489999998653 67899
Q ss_pred HHHH--Hhh----h--hhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHH
Q 018638 185 RENV--GFL----L--YENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 185 ~eni--~~~----~--~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIAr 239 (352)
||+ .|+ + .........+...++.++++.++|.+ ..++++..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 454 1 11111122233456889999999986 889999999999999999987
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-16 Score=143.37 Aligned_cols=148 Identities=19% Similarity=0.261 Sum_probs=84.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc--CCCC-----CceEEEECCEeCCCCCChhhhc--cceEEEEecCCCCCCCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAG--LLAP-----DKGEVYIRGRKRAGLISDEEIS--GLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~G--l~~p-----~~G~I~i~G~~~~~~~~~~~~~--~~~ig~v~Q~~~l~~~lT 183 (352)
-|++|++++|+||||||||||++.|++ +.+| ..|.+++++++.. ...... ..++++.+|+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---~~~~~~~~~~~~g~~~~~-------- 88 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---RPERLLAVAERYGLSGSD-------- 88 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---CHHHHHHHHHHTTCCHHH--------
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---CHHHHHHHHHHcCCCHHH--------
Confidence 489999999999999999999999999 6666 5677777765411 111100 0112222211
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHH-HHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKK-RVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQ-RvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
+.+|+.+ ...++..+.. .+.-++.++.. .+|+++++|||++
T Consensus 89 ~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~lliiD~~~~ 130 (243)
T 1n0w_A 89 VLDNVAY---------------------------------ARAFNTDHQTQLLYQASAMMVE-----SRYALLIVDSATA 130 (243)
T ss_dssp HHHTEEE---------------------------------EECCSHHHHHHHHHHHHHHHHH-----SCEEEEEEETSSG
T ss_pred HhhCeEE---------------------------------EecCCHHHHHHHHHHHHHHHhc-----CCceEEEEeCchH
Confidence 1222111 1112333322 12223333321 2699999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHh-------------------hc
Q 018638 263 GLDPI-------A-----STVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRR-------------------AV 310 (352)
Q Consensus 263 gLD~~-------~-----~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~-------------------~a 310 (352)
.+|+. . ...++..|.++.++ | +|||+++|....... +|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~----------~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 200 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFG----------VAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHAS 200 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHC----------CEEEEEC-------------------------CCTT
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcC----------CEEEEEeeeeecCCCccccCCCcccCCccChhhhcC
Confidence 99985 3 33455556666544 5 699999997765443 79
Q ss_pred CEEEEEeCC
Q 018638 311 DRLIFLYEG 319 (352)
Q Consensus 311 Drv~vL~~G 319 (352)
|++++|+.|
T Consensus 201 d~vi~l~~~ 209 (243)
T 1n0w_A 201 TTRLYLRKG 209 (243)
T ss_dssp CEEEEEEEC
T ss_pred cEEEEEEEc
Confidence 999999875
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-17 Score=163.48 Aligned_cols=129 Identities=18% Similarity=0.245 Sum_probs=93.6
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-ceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV 184 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV 184 (352)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++. + ..+.+++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~-----~~~~~~~~v~Q~~-------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y-----VFKHKKSIVNQRE-------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S-----CCCCSSSEEEEEE--------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h-----hhccCceEEEeee--------
Confidence 566665 7899999999999999999999999999998 899987765432 1 1123578888841
Q ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCC
Q 018638 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264 (352)
Q Consensus 185 ~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgL 264 (352)
+|++ +..| +.+|+++|.. +|++|++|||+
T Consensus 191 -----------------------------~g~~------~~~~------~~~l~~~L~~-------~pd~illdE~~--- 219 (372)
T 2ewv_A 191 -----------------------------VGED------TKSF------ADALRAALRE-------DPDVIFVGEMR--- 219 (372)
T ss_dssp -----------------------------BTTT------BSCS------HHHHHHHTTS-------CCSEEEESCCC---
T ss_pred -----------------------------cCCC------HHHH------HHHHHHHhhh-------CcCEEEECCCC---
Confidence 2221 2233 4699999986 69999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 265 D~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|++.. ..+++.. ..| .+|++++|+.+ +..++||++.|
T Consensus 220 d~e~~---~~~l~~~-~~g----------~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 220 DLETV---ETALRAA-ETG----------HLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp SHHHH---HHHHHHH-TTT----------CEEEECCCCCS-HHHHHHHHHHT
T ss_pred CHHHH---HHHHHHH-hcC----------CEEEEEECcch-HHHHHHHHHHh
Confidence 77653 3344433 345 48999999966 66667776443
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=146.17 Aligned_cols=77 Identities=27% Similarity=0.418 Sum_probs=67.2
Q ss_pred cCCCCCChHHHHHH------HHHHHHhccCCCCCCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 018638 222 RLPSELSGGMKKRV------ALARSIIFDNTKESVE-PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (352)
Q Consensus 222 ~~~~~LSGGqrQRv------aIArAL~~~~~~~a~~-p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~ 294 (352)
+++..||||||||+ ++|++|+. + |++|||||||++||+..+..+.+.|.++.+. .
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~-------~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-----------~ 337 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIG-------NRVECIILDEPTVYLDENRRAKLAEIFRKVKSI-----------P 337 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHS-------SCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSC-----------S
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhc-------CCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccC-----------C
Confidence 56689999999988 56788885 7 9999999999999999999999999887432 3
Q ss_pred EEEEEcCCHHHHHhhcCEEEEEe
Q 018638 295 SYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 295 tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
+||+|||+++ +..+||++++|+
T Consensus 338 ~vi~~th~~~-~~~~~d~~~~l~ 359 (371)
T 3auy_A 338 QMIIITHHRE-LEDVADVIINVK 359 (371)
T ss_dssp EEEEEESCGG-GGGGCSEEEEEE
T ss_pred eEEEEEChHH-HHhhCCEEEEEE
Confidence 8999999987 578899999997
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-18 Score=149.45 Aligned_cols=139 Identities=16% Similarity=0.132 Sum_probs=83.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCEeCCCCC---ChhhhccceEE----EEecCCCCCCCCCHHHH
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLI---SDEEISGLRIG----LVFQSAALFDSLTVREN 187 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~~~~~~~---~~~~~~~~~ig----~v~Q~~~l~~~lTV~en 187 (352)
++++|+|+||||||||+++|+|+++|+ .|+|.++|.++.... ...+ +..++| +++|++.+|- .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~-r~~~ig~~~~~~~~~~~~~i----~~- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSW-KIYNSGADVVIASPVKLAFI----RR- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHH-HHHHHTCEEEEECSSEEEEE----EE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHH-HHHhcCCceEEECCCcEEEE----ec-
Confidence 589999999999999999999999998 899999998754432 1222 112355 8888876651 00
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHH-c-CCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEE-------EEe
Q 018638 188 VGFLLYENSKMRDEQISELVKENLAA-V-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL-------LYD 258 (352)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~l~~-~-gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ll-------LLD 258 (352)
...+ ....+.++++. + |++...- ..|||||+||++||||++.+ |++. +-|
T Consensus 77 ----------~~~~-~~a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~-------p~i~~~~~~a~~~~ 135 (171)
T 2f1r_A 77 ----------VSEE-EGNDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEV-------EHFRQGRILAVVCD 135 (171)
T ss_dssp ----------CCHH-HHTCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGG-------GGGCSSCEEEEECS
T ss_pred ----------CChh-hhhCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCC-------CccCccceEEEEec
Confidence 0111 01123344443 3 4443322 24999999999999999985 5542 335
Q ss_pred CCCC---CCCHHHHHHHHHHHHHHHHcC
Q 018638 259 EPTA---GLDPIASTVVEDLIRSVHKKG 283 (352)
Q Consensus 259 EPts---gLD~~~~~~l~~ll~~l~~~g 283 (352)
.|.. -+|......+.+.|.+..++|
T Consensus 136 ~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 136 ERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp SCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 5532 234445667777776665554
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.3e-19 Score=175.57 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=106.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~~~~~~ 168 (352)
.++++++++.|+...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.+.+.++...... ......+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 46677888888777788888 54 89999999999999999999999999999999999988765321110 0001123
Q ss_pred EEEEe---------cCCCC--CCC----CCHHHHHHhhhhhcC---CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChH
Q 018638 169 IGLVF---------QSAAL--FDS----LTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGG 230 (352)
Q Consensus 169 ig~v~---------Q~~~l--~~~----lTV~eni~~~~~~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGG 230 (352)
+++.| |+|.+ +.. .|+.+++.+....+. ........+ +.+.|..+|+.... .+.+||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHH
Confidence 55655 98865 333 589999987542110 000001112 22356778887653 78899999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEE
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLL 256 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llL 256 (352)
|+|| |||+|+. +|++..
T Consensus 298 ~~QR--LaraL~~-------~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCP-------DCKEPY 314 (418)
T ss_dssp EEEE--EEEEECT-------TTCEEE
T ss_pred HHHH--hhhhhcC-------CCCccC
Confidence 9999 9999986 599865
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-17 Score=157.48 Aligned_cols=111 Identities=20% Similarity=0.146 Sum_probs=77.4
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE---CCEeCCCCCChhhhccceEEEEecCCC-----------
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI---RGRKRAGLISDEEISGLRIGLVFQSAA----------- 177 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i---~G~~~~~~~~~~~~~~~~ig~v~Q~~~----------- 177 (352)
|++..|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++.... ......++|||+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~--~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTA--QLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSC--CEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeee--EEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 456679999999999999999999999999999999999 898765432 1111125899999985
Q ss_pred -----CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCCh
Q 018638 178 -----LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSG 229 (352)
Q Consensus 178 -----l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSG 229 (352)
+||.+|+ +|+.|+...+ ..+...++.++|+.+||. +..+++|.+||.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~~~----~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDCNH----VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTCCS----SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCCcC----CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5888999 9998853211 122235688999999995 788999999985
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.8e-16 Score=134.70 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=76.4
Q ss_pred eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 018638 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (352)
Q Consensus 111 sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~ 190 (352)
+|++++|+.++|+||||||||||+++|++.+.|++|.. +.| .++.+.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~--------------------~~~----------~~~~~~~~~ 81 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR--------------------GYF----------FDTKDLIFR 81 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC--------------------CCE----------EEHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe--------------------EEE----------EEHHHHHHH
Confidence 46678899999999999999999999999887665521 111 123332221
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC-CCCHHHH
Q 018638 191 LLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA-GLDPIAS 269 (352)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts-gLD~~~~ 269 (352)
. ......-.. + .+...+. +|++|+||||++ ++|+..+
T Consensus 82 ~----------------~~~~~~~~~----------------~--~~~~~~~--------~~~llilDE~~~~~~~~~~~ 119 (180)
T 3ec2_A 82 L----------------KHLMDEGKD----------------T--KFLKTVL--------NSPVLVLDDLGSERLSDWQR 119 (180)
T ss_dssp H----------------HHHHHHTCC----------------S--HHHHHHH--------TCSEEEEETCSSSCCCHHHH
T ss_pred H----------------HHHhcCchH----------------H--HHHHHhc--------CCCEEEEeCCCCCcCCHHHH
Confidence 1 111110000 0 1122232 499999999996 9999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH
Q 018638 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 270 ~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~ 304 (352)
..+.+++.+..+++ .++|++||...
T Consensus 120 ~~l~~ll~~~~~~~----------~~ii~tsn~~~ 144 (180)
T 3ec2_A 120 ELISYIITYRYNNL----------KSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHHHHTT----------CEEEEECCCCS
T ss_pred HHHHHHHHHHHHcC----------CCEEEEcCCCh
Confidence 99999999987766 58999999764
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-15 Score=149.84 Aligned_cols=150 Identities=16% Similarity=0.193 Sum_probs=92.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHH--HHHcCCCCCce-----EEEECCEeCCCCCChhhhc--cceEEEEecCCCCCCCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILK--IIAGLLAPDKG-----EVYIRGRKRAGLISDEEIS--GLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk--~l~Gl~~p~~G-----~I~i~G~~~~~~~~~~~~~--~~~ig~v~Q~~~l~~~lT 183 (352)
-|++|++++|+||||||||||++ +++++.+++.| .|+|++++.. ...... ..++|+.+| +
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~---~~~rl~~~a~~~gl~~~--------~ 242 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF---RPVRLVSIAQRFGLDPD--------D 242 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---CHHHHHHHHHHTTCCHH--------H
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc---CHHHHHHHHHHcCCChH--------h
Confidence 58999999999999999999999 45677777554 7788776421 111110 112333222 3
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
+.+|+.+.. ..... .+.+.+.-++.++.. .+|+++++|||++.
T Consensus 243 vleni~~~~----~~~~~----------------------------~~~~~l~~~~~~l~~-----~~~~llVIDs~t~~ 285 (400)
T 3lda_A 243 ALNNVAYAR----AYNAD----------------------------HQLRLLDAAAQMMSE-----SRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHTEEEEE----CCSHH----------------------------HHHHHHHHHHHHHHH-----SCEEEEEEETGGGG
T ss_pred HhhcEEEec----cCChH----------------------------HHHHHHHHHHHHHHh-----cCCceEEecchhhh
Confidence 344432211 01111 112223333333321 36999999999999
Q ss_pred CCHHHH------------HHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCH-------------------HHHHhhcC
Q 018638 264 LDPIAS------------TVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH-------------------STIRRAVD 311 (352)
Q Consensus 264 LD~~~~------------~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl-------------------~~i~~~aD 311 (352)
+|+... ..+++.|++++++ + +|||+|+|.. ..+..++|
T Consensus 286 ~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~g----------itVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad 355 (400)
T 3lda_A 286 YRTDFSGRGELSARQMHLAKFMRALQRLADQFG----------VAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSST 355 (400)
T ss_dssp CC------CCHHHHHHHHHHHHHHHHHHHHHHC----------CEEEEEEEC--------------------CHHHHHCS
T ss_pred CchhhcCccchHHHHHHHHHHHHHHHHHHHHcC----------CEEEEEEeecccCCccccccCCCccCCchhHHHHhcc
Confidence 997533 5677888888765 5 6999999982 23577899
Q ss_pred EEEEEeCCe
Q 018638 312 RLIFLYEGK 320 (352)
Q Consensus 312 rv~vL~~G~ 320 (352)
.+++|++++
T Consensus 356 ~vl~L~~~~ 364 (400)
T 3lda_A 356 TRLGFKKGK 364 (400)
T ss_dssp EEEEEEECS
T ss_pred eEEEEEecC
Confidence 999998764
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-17 Score=170.82 Aligned_cols=175 Identities=15% Similarity=0.201 Sum_probs=109.9
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
..+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|+++|.+-.... ....++++.|........|
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~-----~~~~v~~~~r~~~~~~~~~ 321 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY-----HENWIAEVTRTGMGEGEID 321 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC-----CSSEEEEECBCCSSSCCBC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC-----CCCeEEEEeecccccCCcC
Confidence 35788999999999999999999999999999999999999999999886422111 0123666665533222234
Q ss_pred HHHHHHhhhhhcC------CCCHHHHHHH------------------HHHHHHHcC-----CCc----ccc---cCCCCC
Q 018638 184 VRENVGFLLYENS------KMRDEQISEL------------------VKENLAAVG-----LKG----VED---RLPSEL 227 (352)
Q Consensus 184 V~eni~~~~~~~~------~~~~~~~~~~------------------v~~~l~~~g-----L~~----~~~---~~~~~L 227 (352)
..+++...+.... .....+.... +.++++++. +.. .++ .....+
T Consensus 322 ~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~ 401 (511)
T 2oap_1 322 MYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWV 401 (511)
T ss_dssp HHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEE
T ss_pred HHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEE
Confidence 4444433221100 0111111100 122233322 211 111 223468
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE--EcCCHHH
Q 018638 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV--VTHQHST 305 (352)
Q Consensus 228 SGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi--vTHdl~~ 305 (352)
|+||+||+++| ++ | |+|||+.....+++.|.++.+++ .|+++ +||++++
T Consensus 402 s~G~~~R~~~a-----------------i~-E-~~GlDp~~~~~~~~~l~~~~~~~----------~tii~~~~sH~l~e 452 (511)
T 2oap_1 402 RGNTRLRRTKE-----------------VN-E-ILGIDPVDKNLLVNQFVKWDPKE----------DKHIEVSMPKKLEK 452 (511)
T ss_dssp SSSCEEEEEEE-----------------EE-E-EEECCSSSSCCEEEEEEEEETTT----------TEEEECSCCTHHHH
T ss_pred eCCCceEEEEE-----------------EE-E-EcCcccCCCeEEEEEeEEEcccC----------CEEEEcccHHHHHH
Confidence 99999886543 11 6 99999988877777777765554 47875 9999999
Q ss_pred HHhhcCE
Q 018638 306 IRRAVDR 312 (352)
Q Consensus 306 i~~~aDr 312 (352)
+...|+.
T Consensus 453 i~~~~g~ 459 (511)
T 2oap_1 453 MADFLGV 459 (511)
T ss_dssp HHHHHTS
T ss_pred HHHHcCC
Confidence 9888753
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-18 Score=167.47 Aligned_cols=178 Identities=16% Similarity=0.242 Sum_probs=119.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCC-------cEEEEEcCCCchHHHHHHHHHcCC----CCCceEEEECCEeCCCCCC
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHG-------EAVGIIGPSGTGKSTILKIIAGLL----APDKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~G-------e~~~IiGpNGsGKSTLlk~l~Gl~----~p~~G~I~i~G~~~~~~~~ 160 (352)
++.+++++.||+..+++++++.|.+| +.++|+||||+|||||+++|+|.+ .|++|.+..++.++...
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~-- 96 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI-- 96 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH--
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH--
Confidence 55667777888888999999999887 899999999999999999999998 67788777666543210
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCC----HHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHH
Q 018638 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR----DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~----~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRva 236 (352)
.....+..|.|++|...+++ ++.|++...+... ... .....+.+...+..+++.. ....+..||+|+|||+.
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESCGGGSCHHHHTTCS
T ss_pred HHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcC
Confidence 00112336999999877765 7888875433221 111 1122233555566677655 67788999999999973
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
++ .+||+....++.++|++..+.- . ++|+.+.+..++++
T Consensus 173 l~-----------------------~~Ld~~~~~~l~~iL~~~~~~~-----------~---~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 173 II-----------------------LELDFYTVKELKEIIKRAASLM-----------D---VEIEDAAAEMIAKR 211 (334)
T ss_dssp EE-----------------------EECCCCCHHHHHHHHHHHHHHT-----------T---CCBCHHHHHHHHHT
T ss_pred ce-----------------------eeCCCCCHHHHHHHHHHHHHHc-----------C---CCcCHHHHHHHHHh
Confidence 32 5667777888888888876542 1 25777766666654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-15 Score=140.11 Aligned_cols=138 Identities=18% Similarity=0.215 Sum_probs=77.7
Q ss_pred EEEEEcCCCchHHHHHHHHHc-CCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAG-LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK 197 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G-l~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~ 197 (352)
.+.|.||||+|||||+++|+| ++.|+.|.|.++|.+... ... ....+++++|...+.-..+ + . ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~--~---~-----~~ 103 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT---ASN-RKLELNVVSSPYHLEITPS--D---M-----GN 103 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------------CCEECSSEEEECCC--------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc---ccc-ccceeeeecccceEEecHh--h---c-----CC
Confidence 389999999999999999999 899999999999976432 111 1335889998765421111 0 0 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 018638 198 MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277 (352)
Q Consensus 198 ~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~ 277 (352)
.......+.+.++.+..++..+. +||| +.. +|+++|+|||++ ||+..+..+.+.|.
T Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~-----~ls~-----------l~~-------~~~vlilDE~~~-L~~~~~~~L~~~le 159 (354)
T 1sxj_E 104 NDRIVIQELLKEVAQMEQVDFQD-----SKDG-----------LAH-------RYKCVIINEANS-LTKDAQAALRRTME 159 (354)
T ss_dssp CCHHHHHHHHHHHTTTTC-----------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccc-----cccc-----------cCC-------CCeEEEEeCccc-cCHHHHHHHHHHHH
Confidence 11112233333333333333222 6677 543 699999999999 99999999999888
Q ss_pred HHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 278 SVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 278 ~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
+... + .++|++||+++.
T Consensus 160 ~~~~-~----------~~~Il~t~~~~~ 176 (354)
T 1sxj_E 160 KYSK-N----------IRLIMVCDSMSP 176 (354)
T ss_dssp HSTT-T----------EEEEEEESCSCS
T ss_pred hhcC-C----------CEEEEEeCCHHH
Confidence 7533 2 689999999754
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-19 Score=157.45 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=88.0
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC-------------CCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA-------------PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-------------p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~ 181 (352)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.+.... ....+.+ .+.|+..++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~-~~~~~~~----~i~~~~~l~~- 73 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFV-TREMMQR----DIAAGDFIEH- 73 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEEC-CHHHHHH----HHHHTCEEEE-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEc-cHHHHHH----HHHcCCCEee-
Confidence 5799999999999999999999999886 66665 355443221 1111111 1245544442
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHH---HHHH-HHhccCCCCCCCCcEEEE
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV---ALAR-SIIFDNTKESVEPEVLLY 257 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRv---aIAr-AL~~~~~~~a~~p~llLL 257 (352)
.++.+|+ ++ .+.++ +.++++.... ...+..+ .|-++.. ..|| +++. +|++++|
T Consensus 74 ~~~~~n~-~g------~~~~~----i~~~~~~~~~-~~~~~~~----~g~~~~~~~~~~~~~~~l~-------~p~~~il 130 (198)
T 1lvg_A 74 AEFSGNL-YG------TSKEA----VRAVQAMNRI-CVLDVDL----QGVRSIKKTDLCPIYIFVQ-------PPSLDVL 130 (198)
T ss_dssp EEETTEE-EE------EEHHH----HHHHHHTTCE-EEEECCH----HHHHHHTTSSCCCEEEEEE-------CSCHHHH
T ss_pred eeecCcc-CC------CCHHH----HHHHHHcCCc-EEEECCH----HHHHHHHhcCCCcEEEEEe-------CCCHHHH
Confidence 3455554 32 12222 3344443111 0111000 1111111 1455 5664 5788889
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 258 DEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
||+|+++|..+...+.+.|..+.++ +.++| +. ..+|+|+++++
T Consensus 131 de~~~~~d~~~e~~i~~~l~~~~~~--------------~~~a~--~~--~~~D~iivnd~ 173 (198)
T 1lvg_A 131 EQRLRLRNTETEESLAKRLAAARTD--------------MESSK--EP--GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHH--------------TTGGG--ST--TTCSEEEECSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH--------------HHHhh--cc--CCceEEEECCC
Confidence 9999999999999999888887653 23456 22 45799888764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-15 Score=149.30 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=87.1
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
-++++|+++.|+.++|+|+|||||||||++|+|..+ .+.+.+...+ ...+|+|+++.. ..+++.|
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-------~p~~G~V~~~~~--~~~~l~D 211 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-------SPNLGVVEVSEE--ERFTLAD 211 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-------CCEEEEEECSSS--CEEEEEE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-------cceeeEEEecCc--ceEEEEe
Confidence 479999999999999999999999999999999843 2333322111 113455554320 0011111
Q ss_pred HHHhh--hhhcCCCCHHHHH--HHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 187 NVGFL--LYENSKMRDEQIS--ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 187 ni~~~--~~~~~~~~~~~~~--~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
+..+. ............. +++..++..+++. ++++.+||+||+|++++|++|+. +|.+|++ +
T Consensus 212 tpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~-------~P~ILVl----N 277 (416)
T 1udx_A 212 IPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLR-------RPSLVAL----N 277 (416)
T ss_dssp CCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHH-------SCEEEEE----E
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhc-------CCEEEEE----E
Confidence 11000 0001111111110 1112233333443 55678899999999999999987 5999999 9
Q ss_pred CCCHHHHHHHHHHHHH-HHHcC
Q 018638 263 GLDPIASTVVEDLIRS-VHKKG 283 (352)
Q Consensus 263 gLD~~~~~~l~~ll~~-l~~~g 283 (352)
.+|+... ...+.+.+ +.+.+
T Consensus 278 KlDl~~~-~~~~~l~~~l~~~g 298 (416)
T 1udx_A 278 KVDLLEE-EAVKALADALAREG 298 (416)
T ss_dssp CCTTSCH-HHHHHHHHHHHTTT
T ss_pred CCChhhH-HHHHHHHHHHHhcC
Confidence 9999876 44444444 33334
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-16 Score=148.33 Aligned_cols=127 Identities=16% Similarity=0.141 Sum_probs=87.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh--
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL-- 192 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~-- 192 (352)
.++.+++|+|++|||||||+++|++++.+. | . . ...+.+|+|+..+++. ++++|+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~---~~~~~iv~~D~f~~~~-~~~~~l~~~~~~ 89 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G---EKSIGYASIDDFYLTH-EDQLKLNEQFKN 89 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G---GSCEEEEEGGGGBCCH-HHHHHHHHHTTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C---CceEEEeccccccCCh-HHHHHHhccccc
Confidence 468899999999999999999999999764 2 0 0 1135666999988874 8999998752
Q ss_pred ---hhcCCCCHHHHHHHHHHHHHHcCCC--------cccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 193 ---YENSKMRDEQISELVKENLAAVGLK--------GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 193 ---~~~~~~~~~~~~~~v~~~l~~~gL~--------~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
....+.+.....+.+.+.++.+.-. .....+...+||||+||+++|++... +|+|||+||||
T Consensus 90 ~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-------~~~IlIlEG~~ 162 (290)
T 1odf_A 90 NKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-------PVDIFILEGWF 162 (290)
T ss_dssp CGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-------SCSEEEEEESS
T ss_pred cchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-------CCCEEEEeCcc
Confidence 1111111111122344555555322 12345568999999999999844431 39999999999
Q ss_pred CCCCHH
Q 018638 262 AGLDPI 267 (352)
Q Consensus 262 sgLD~~ 267 (352)
+++|+.
T Consensus 163 ~~ld~~ 168 (290)
T 1odf_A 163 LGFNPI 168 (290)
T ss_dssp TTCCCC
T ss_pred ccCCcc
Confidence 999985
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.1e-17 Score=154.48 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=78.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEE-------------------eCCcEEEEEcCCCchHHHHHHHHHcCCC--CCceEEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKI-------------------RHGEAVGIIGPSGTGKSTILKIIAGLLA--PDKGEVY 149 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i-------------------~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--p~~G~I~ 149 (352)
+|+++||++.|+ +++++++|.+ .+|+++||+||||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 589999999994 6899999988 8999999999999999999999999998 9999999
Q ss_pred E---CCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 150 I---RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 150 i---~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
+ +|.... ... ...+|++ |+..+++.+++.+|+.+..
T Consensus 115 vi~~d~~~~~----~~~--~~~~~~v-q~~~~~~~~~~~~~~~~~~ 153 (308)
T 1sq5_A 115 LITTDGFLHP----NQV--LKERGLM-KKKGFPESYDMHRLVKFVS 153 (308)
T ss_dssp EEEGGGGBCC----HHH--HHHHTCT-TCTTSGGGBCHHHHHHHHH
T ss_pred EEecCCccCc----HHH--HHhCCEe-ecCCCCCCccHHHHHHHHH
Confidence 9 886531 121 1247888 8888778889999998754
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-18 Score=161.46 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=104.3
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCC-CCCC
Q 018638 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA-ALFD 180 (352)
Q Consensus 102 ~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~-~l~~ 180 (352)
+...+++++++++++| ++|+||||||||||+|+|+|.+.+ |.|.++|.++....... ...+++++||.. ..+|
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~--~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGE--SERAVRQVFQRAKNSAP 104 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHH--HHHHHHHHHHHHHHTCS
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhH--HHHHHHHHHHHHHhcCC
Confidence 4456889999999999 999999999999999999999887 79999997764322111 122588999975 5566
Q ss_pred CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC
Q 018638 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (352)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP 260 (352)
.+++.|++.+..... ... ... .+....++.+.+|||||+||+.|++|+.+ +|++| |||
T Consensus 105 ~i~~~Deid~~~~~r---~~~----~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn-------~p~~L--D~a 162 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR---SDR----ETG------ASVRVVNQLLTEMDGLEARQQVFIMAATN-------RPDII--DPA 162 (274)
T ss_dssp EEEEEETCTTTCC----------------------CTTHHHHHHHHHHTCCSTTCEEEEEEES-------CGGGS--CHH
T ss_pred CeEeeehhhhhhccc---CCC----cch------HHHHHHHHHHHhhhcccccCCEEEEeecC-------ChhhC--CHh
Confidence 677778876532110 000 000 13345677788999999999999999986 58875 998
Q ss_pred CC------------CCCHHHHHHHHHHH
Q 018638 261 TA------------GLDPIASTVVEDLI 276 (352)
Q Consensus 261 ts------------gLD~~~~~~l~~ll 276 (352)
+. --|...+.++++.+
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 64 23666666665543
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-14 Score=122.67 Aligned_cols=92 Identities=22% Similarity=0.328 Sum_probs=69.7
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce--EEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G--~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
+|+++ +|+.++|+||||||||||+++|++.+.+ +| .+++++.++ ...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~-----------------------~~~-- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM-----------------------PLT-- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS-----------------------CCC--
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh-----------------------hHH--
Confidence 45555 8999999999999999999999999876 46 444443221 000
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
+++. +|++|++|||++
T Consensus 79 --------------------------------------------------------~~~~-------~~~lLilDE~~~- 94 (149)
T 2kjq_A 79 --------------------------------------------------------DAAF-------EAEYLAVDQVEK- 94 (149)
T ss_dssp --------------------------------------------------------GGGG-------GCSEEEEESTTC-
T ss_pred --------------------------------------------------------HHHh-------CCCEEEEeCccc-
Confidence 1233 499999999998
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE-EEEEcCC
Q 018638 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIAS-YVVVTHQ 302 (352)
Q Consensus 264 LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~t-vIivTHd 302 (352)
+|...+..+++++.++.++| .+ +|++||.
T Consensus 95 ~~~~~~~~l~~li~~~~~~g----------~~~iiits~~ 124 (149)
T 2kjq_A 95 LGNEEQALLFSIFNRFRNSG----------KGFLLLGSEY 124 (149)
T ss_dssp CCSHHHHHHHHHHHHHHHHT----------CCEEEEEESS
T ss_pred cChHHHHHHHHHHHHHHHcC----------CcEEEEECCC
Confidence 66666899999999988776 36 8888884
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-15 Score=146.11 Aligned_cols=119 Identities=23% Similarity=0.267 Sum_probs=70.6
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE---CCEeCCCCCChhhhccceEEEEecCCCCCC----CCCH
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI---RGRKRAGLISDEEISGLRIGLVFQSAALFD----SLTV 184 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i---~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~----~lTV 184 (352)
+++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+...... ...+..+||++|.|.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~---~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV---ELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC---CEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH---HHhhcCCEEEecCCCccccccccCCH
Confidence 667899999999999999999999999999999999999 887654321 111112699999997754 6789
Q ss_pred HHHHH--hh-hhh-------cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHH
Q 018638 185 RENVG--FL-LYE-------NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKR 234 (352)
Q Consensus 185 ~eni~--~~-~~~-------~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQR 234 (352)
||+. |+ +.. ..+....+...++.++++.++|.+...+...+|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 8883 33 110 1111112223458899999999875555556677778773
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-16 Score=138.79 Aligned_cols=152 Identities=21% Similarity=0.189 Sum_probs=83.2
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~ 193 (352)
.++|++++|+||||||||||+++|+|+++|+ | ..+|+|+++...++. +..+|+.....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------------------~~~g~v~~d~~~~~~-~~~~~~~~~~~ 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------------------LPAEVVPMDGFHLDN-RLLEPRGLLPR 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------------------CCEEEEESGGGBCCH-HHHGGGTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------------------CceEEEecCCCcCCH-HHHHHhccccc
Confidence 4789999999999999999999999999864 2 024445444433321 22222211000
Q ss_pred h--cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHH-HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHH
Q 018638 194 E--NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA-RSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270 (352)
Q Consensus 194 ~--~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIA-rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~ 270 (352)
. ..........+.+..+-..-.+.-........+|+||+||+++| ++++. ++.++++|||.-
T Consensus 77 ~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~-------eg~~~l~de~~~-------- 141 (208)
T 3c8u_A 77 KGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAII-------EGNYLLFDAPGW-------- 141 (208)
T ss_dssp TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEE-------EESSTTBCSTTG--------
T ss_pred CCCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEE-------CCceeccCCchh--------
Confidence 0 00011122222222211110111111223345799999999998 87775 477888888831
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH-HHhhcCEEEEEeCCe
Q 018638 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST-IRRAVDRLIFLYEGK 320 (352)
Q Consensus 271 ~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~-i~~~aDrv~vL~~G~ 320 (352)
.++...- -.+|+++++.+. +.+++.|. +..|.
T Consensus 142 ------~~l~~~~----------d~~i~vd~~~~~~~~R~~~R~--~~~g~ 174 (208)
T 3c8u_A 142 ------RDLTAIW----------DVSIRLEVPMADLEARLVQRW--LDHGL 174 (208)
T ss_dssp ------GGGGGTC----------SEEEEECCCHHHHHHHHHHHH--HHTTC
T ss_pred ------HHHHHhc----------CEEEEEeCCHHHHHHHHHHHH--HhcCC
Confidence 0111111 157788888776 55666662 45565
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-17 Score=161.58 Aligned_cols=170 Identities=16% Similarity=0.220 Sum_probs=117.2
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc------------CCCCCceEEEECCEeCCCCCChhhhccce---EEEEecCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAG------------LLAPDKGEVYIRGRKRAGLISDEEISGLR---IGLVFQSAA 177 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~G------------l~~p~~G~I~i~G~~~~~~~~~~~~~~~~---ig~v~Q~~~ 177 (352)
++++|..++|+|+||||||||+|+|+| ...|+.|.|.+.|.++..+ ......++. ..++.+.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l-~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWL-CEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHH-HHHHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhh-hhhcccccccCcceEEEeccc
Confidence 557899999999999999999999999 6789999999987532110 000001112 347788888
Q ss_pred CCCCCCHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC--c
Q 018638 178 LFDSLTVRENV--GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP--E 253 (352)
Q Consensus 178 l~~~lTV~eni--~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p--~ 253 (352)
+++..+..|++ .|..... . +..++..+++. .+..+..+||+. +| +
T Consensus 95 l~~~~s~~e~L~~~fl~~ir-~---------~d~il~Vvd~~--~d~~i~~v~~~~-------------------dP~~d 143 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVR-A---------VDAIYQVVRAF--DDAEIIHVEGDV-------------------DPIRD 143 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHT-T---------CSEEEEEEECC--CTTCSSCCSSSS-------------------CHHHH
T ss_pred cccCCcHHHHHHHHHHHHHH-H---------HHHHHHHHhcc--ccceeeeecccc-------------------Ccchh
Confidence 88877776655 2221111 0 01111112221 133444455542 48 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE-EEeCC-eEEEeec
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSV-HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI-FLYEG-KIVWQGM 326 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l-~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~-vL~~G-~iv~~g~ 326 (352)
++++|||+.++|+......++.+..+ .+.| .|++ +|++..+..+||++. +|++| +++..|+
T Consensus 144 i~ildeel~~~D~~~~~k~~~~l~~~~~~~g----------~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~ 207 (392)
T 1ni3_A 144 LSIIVDELLIKDAEFVEKHLEGLRKITSRGA----------NTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGD 207 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS----------CSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSC
T ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHhcC----------Cccc--cccHHHHHHHHHHHHHHhccCCceeecCC
Confidence 99999999999999999999999887 5544 3543 999999999999999 99999 8876654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-12 Score=124.83 Aligned_cols=145 Identities=15% Similarity=0.167 Sum_probs=94.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhh
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE 194 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~ 194 (352)
.+|++++|+|||||||||+++.|++.+.+++| +++.++.+++. ..++.+++....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--------------------~~V~lv~~D~~---r~~a~eqL~~~~-- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--------------------KKIAFITTDTY---RIAAVEQLKTYA-- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------------------CCEEEEECCCS---STTHHHHHHHHH--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--------------------CEEEEEecCcc---cchHHHHHHHHH--
Confidence 47999999999999999999999999988777 13667777652 235555554321
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 018638 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274 (352)
Q Consensus 195 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ 274 (352)
+..|+..... .+ +..-+.+|+++ . +|+++|+| |+|+|+.....+.+
T Consensus 158 -----------------~~~gl~~~~~-----~~-~~~l~~al~~~--~-------~~dlvIiD--T~G~~~~~~~~~~e 203 (296)
T 2px0_A 158 -----------------ELLQAPLEVC-----YT-KEEFQQAKELF--S-------EYDHVFVD--TAGRNFKDPQYIDE 203 (296)
T ss_dssp -----------------TTTTCCCCBC-----SS-HHHHHHHHHHG--G-------GSSEEEEE--CCCCCTTSHHHHHH
T ss_pred -----------------HhcCCCeEec-----CC-HHHHHHHHHHh--c-------CCCEEEEe--CCCCChhhHHHHHH
Confidence 2233322111 12 23346666653 4 59999999 99999876655555
Q ss_pred HHHHHHHcCCCCCCCCCCceEEEE-EcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 275 LIRSVHKKGENGLANPGNIASYVV-VTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 275 ll~~l~~~g~~~~~~~~~~~tvIi-vTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+.+-+.... +.. .++|+ ++|+.+.+.++++++..+..+.++...
T Consensus 204 l~~~l~~~~------~~~-~~lVl~at~~~~~~~~~~~~~~~l~~~giVltk 248 (296)
T 2px0_A 204 LKETIPFES------SIQ-SFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTK 248 (296)
T ss_dssp HHHHSCCCT------TEE-EEEEEETTBCHHHHHHHTTTTSSSCCCEEEEEC
T ss_pred HHHHHhhcC------CCe-EEEEEECCCCHHHHHHHHHHHhcCCCCEEEEeC
Confidence 443332100 000 23444 499999999999988777778887643
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-14 Score=144.11 Aligned_cols=181 Identities=17% Similarity=0.123 Sum_probs=114.5
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHc--CCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAG--LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G--l~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
.+++++.++..+.|.|++||||||+++.|.. +..++.|+|.+.+.|.... .+.... .-|.++. +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~----el~~~~-----~lPhl~~--~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKML----ELSVYE-----GIPHLLT--EVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSS----GGGGGT-----TCTTBSS--SCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchh----hhhhhc-----cCCcccc--eeec
Confidence 4778889999999999999999999999876 6677778888877765421 111000 0011111 1222
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc---cCCCCCChHHHHHH----------HHHHHHhccCCCCCCCCc
Q 018638 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVED---RLPSELSGGMKKRV----------ALARSIIFDNTKESVEPE 253 (352)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~---~~~~~LSGGqrQRv----------aIArAL~~~~~~~a~~p~ 253 (352)
|......... ....+++++. ++++.+|+.++.. +....+|+||+|+. ++|+++.. .|.
T Consensus 228 d~~~a~~~L~-~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~-------lP~ 298 (512)
T 2ius_A 228 DMKDAANALR-WCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKK-------EPY 298 (512)
T ss_dssp SHHHHHHHHH-HHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCC-------CCE
T ss_pred CHHHHHHHHH-HHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhcccccccc-------CCc
Confidence 2221111000 1234566664 6788899875432 23456899998763 24455542 587
Q ss_pred -EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-------HHHhhcCEEEEE
Q 018638 254 -VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-------TIRRAVDRLIFL 316 (352)
Q Consensus 254 -llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-------~i~~~aDrv~vL 316 (352)
++++||+++-+|. ....+.+.|.++.+.|+. . +.++|++||+++ ....+.+||.+-
T Consensus 299 ivlvIDE~~~ll~~-~~~~~~~~l~~Lar~gRa-~-----GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 299 IVVLVDEFADLMMT-VGKKVEELIARLAQKARA-A-----GIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp EEEEEETHHHHHHH-HHHHHHHHHHHHHHHCGG-G-----TEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred EEEEEeCHHHHHhh-hhHHHHHHHHHHHHHhhh-C-----CcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 8999999998884 345677888887665420 0 168999999987 455666777663
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-12 Score=124.77 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=94.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
+.++++++.|+... ++++|+ +|++++|+|+||+||||+++.|+|++.+..|+|.+.+.+... ...
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~---~~~-------- 141 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR---PAA-------- 141 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC---HHH--------
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc---HhH--------
Confidence 55678888887543 788998 899999999999999999999999999999999998765421 100
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+ +.+. .+.+..++.-..... ..+..+.+|.+|+++... +
T Consensus 142 ------------~-~ql~-------------------~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~-------~ 180 (295)
T 1ls1_A 142 ------------R-EQLR-------------------LLGEKVGVPVLEVMD--GESPESIRRRVEEKARLE-------A 180 (295)
T ss_dssp ------------H-HHHH-------------------HHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHH-------T
T ss_pred ------------H-HHHH-------------------HhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhC-------C
Confidence 0 0000 012233443221100 123345578999998765 5
Q ss_pred CcEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 018638 252 PEVLLYDEP-TAGLDPIASTVVEDLIRSVH 280 (352)
Q Consensus 252 p~llLLDEP-tsgLD~~~~~~l~~ll~~l~ 280 (352)
++++|+||| +.++|.....++.++.+.+.
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 999999999 99999988888877776653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-12 Score=123.77 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=82.9
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHH
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV 188 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni 188 (352)
.++++.++|++++|+|||||||||+++.|++++.++.|+|.+.+.|... . + ..++
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---~--------~-------------a~eq- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---A--------A-------------AIEQ- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---H--------H-------------HHHH-
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---H--------H-------------HHHH-
Confidence 3566678999999999999999999999999999998999887765311 0 0 0111
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHH---HHHHHHhccCCCCCCCCcEEEEeCCCCCCC
Q 018638 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV---ALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (352)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRv---aIArAL~~~~~~~a~~p~llLLDEPtsgLD 265 (352)
+..+++.+++.. ...+|+|+.|++ +|++++.. +|+++|+|||..
T Consensus 151 ------------------L~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~-------~~dvvIiDtpg~--- 197 (306)
T 1vma_A 151 ------------------LKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALAR-------NKDVVIIDTAGR--- 197 (306)
T ss_dssp ------------------HHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHT-------TCSEEEEEECCC---
T ss_pred ------------------HHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhc-------CCCEEEEECCCc---
Confidence 223455566643 235789999999 99999986 699999999974
Q ss_pred HHHHHHHHHHHHHHH
Q 018638 266 PIASTVVEDLIRSVH 280 (352)
Q Consensus 266 ~~~~~~l~~ll~~l~ 280 (352)
......+++.|.++.
T Consensus 198 ~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 198 LHTKKNLMEELRKVH 212 (306)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 334455555555554
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-13 Score=134.03 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=49.4
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~ 156 (352)
..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 5689999999999 999999999999999999999999999999999998764
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-13 Score=121.31 Aligned_cols=171 Identities=14% Similarity=0.172 Sum_probs=88.5
Q ss_pred eeEee-eEEEeCCcEEEEEcCCCchHHHHHH-HHHcCCCCCceEEEECCEeCCCCCChhhhcc--ceEEEEecCCCCCCC
Q 018638 106 ILRGV-SFKIRHGEAVGIIGPSGTGKSTILK-IIAGLLAPDKGEVYIRGRKRAGLISDEEISG--LRIGLVFQSAALFDS 181 (352)
Q Consensus 106 ~L~~v-sl~i~~Ge~~~IiGpNGsGKSTLlk-~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~--~~ig~v~Q~~~l~~~ 181 (352)
.|+.+ .--+++|++++|+||||||||||+. ++.+..+...+.+++.++. ....... .++|+.+|+......
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-----~~~~~~~~~~~~g~~~~~~~~~~~ 85 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-----HPVQVRQNMAQFGWDVKPYEEKGM 85 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-----CHHHHHHHHHTTTCCCHHHHHHTS
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-----CHHHHHHHHHHcCCCHHHHhhCCc
Confidence 45555 5578999999999999999999954 5555555544555555432 1111110 113333322100000
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
+++.+. . .. .++.....+.....-+....+....++.++.. .+|+++++|+|+
T Consensus 86 l~~~~~----------~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~vviD~~~ 138 (247)
T 2dr3_A 86 FAMVDA----------F-TA-----------GIGKSKEYEKYIVHDLTDIREFIEVLRQAIRD-----INAKRVVVDSVT 138 (247)
T ss_dssp EEEEEC----------S-TT-----------TTCC--CCCSCBCSCCSSHHHHHHHHHHHHHH-----HTCCEEEEETSG
T ss_pred EEEEec----------c-hh-----------hcccccccccccccCccCHHHHHHHHHHHHHH-----hCCCEEEECCch
Confidence 000000 0 00 00000000001111111222333333333321 269999999999
Q ss_pred CCC--CHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEcCCHHH--------HHhhcCEEEEEeC
Q 018638 262 AGL--DPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHST--------IRRAVDRLIFLYE 318 (352)
Q Consensus 262 sgL--D~~~~~~l~~ll~~l~-~~g~~~~~~~~~~~tvIivTHdl~~--------i~~~aDrv~vL~~ 318 (352)
+.+ |+....+++..+.++. +.| +|||+++|.... +..+||.|++|+.
T Consensus 139 ~l~~~~~~~~~~~l~~l~~~~~~~~----------~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 139 TLYINKPAMARSIILQLKRVLAGTG----------CTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GGTTTCGGGHHHHHHHHHHHHHHTT----------CEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCC----------CeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 988 6544455555555554 444 699999998876 5678899999974
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.25 E-value=9.8e-13 Score=132.09 Aligned_cols=183 Identities=11% Similarity=0.123 Sum_probs=116.3
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce-EEEECCEeCCCCCChhhhccceEEEEecCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G-~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
...|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+. +......+-++... ..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~----s~~~l~~r~~~~~~-------~~ 258 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM----SAQQLVMRMLCAEG-------NI 258 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS----CHHHHHHHHHHHHH-------TC
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC----CHHHHHHHHHHHHc-------CC
Confidence 3468888888999999999999999999999999987766444 455443221 11111110000000 01
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
.. +.+. ......++ .+++.++++.++..+..-..+..+|.+|.+ +.+|.++.. .+|+++++|+++.
T Consensus 259 ~~-~~l~-----~g~l~~~~-~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~-----~~~~livID~l~~ 324 (454)
T 2r6a_A 259 NA-QNLR-----TGKLTPED-WGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQE-----SGLGMIVIDYLQL 324 (454)
T ss_dssp CH-HHHH-----TSCCCHHH-HHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTT-----TCCCEEEEECGGG
T ss_pred CH-HHHh-----cCCCCHHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHH-----cCCCEEEEccHHH
Confidence 11 1111 11233333 234556666665444433445789999876 677777742 4799999999998
Q ss_pred CCC--------HHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcC---------C--HH--------HHHhhcCEEE
Q 018638 263 GLD--------PIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTH---------Q--HS--------TIRRAVDRLI 314 (352)
Q Consensus 263 gLD--------~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTH---------d--l~--------~i~~~aDrv~ 314 (352)
-.+ .....++.+.|+.++++ + ++||+++| + +. .+...||.|+
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~----------i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi 394 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELE----------VPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVA 394 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHT----------CCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEE
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhC----------CeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEE
Confidence 774 23446677777877755 4 68999999 3 22 5677899999
Q ss_pred EEeCCeE
Q 018638 315 FLYEGKI 321 (352)
Q Consensus 315 vL~~G~i 321 (352)
+|+.++.
T Consensus 395 ~l~r~~~ 401 (454)
T 2r6a_A 395 FLYRDDY 401 (454)
T ss_dssp EEEETTC
T ss_pred EEecccc
Confidence 9987654
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-16 Score=148.28 Aligned_cols=134 Identities=13% Similarity=0.193 Sum_probs=92.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
..+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++....... ...+++
T Consensus 49 ~~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~--~~~~i~ 122 (278)
T 1iy2_A 49 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGV--GAARVR 122 (278)
T ss_dssp HHHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTH--HHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhH--HHHHHH
Confidence 345677888887778999999999999 99999999999999999999885 799999887643211111 112477
Q ss_pred EEecCCC-CCCCCCHHHHHHhhh-hhcCC--CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 171 LVFQSAA-LFDSLTVRENVGFLL-YENSK--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 171 ~v~Q~~~-l~~~lTV~eni~~~~-~~~~~--~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
++||... .++.+++.|++.... ..... ...++..+.+.++ +.+|||||+||+.|++|+.+
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-------------HHHHTTCCTTCCEEEEEEES
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEecC
Confidence 8888763 566678888885322 11100 0111222222222 34689999999999999986
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-16 Score=146.07 Aligned_cols=143 Identities=14% Similarity=0.208 Sum_probs=97.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
..+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.++|.++........ ..+++
T Consensus 25 ~~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~--~~~i~ 98 (254)
T 1ixz_A 25 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVG--AARVR 98 (254)
T ss_dssp HHHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHH--HHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHH--HHHHH
Confidence 456778888887778899999999999 99999999999999999999885 7899998865422111111 12467
Q ss_pred EEecCCC-CCCCCCHHHHHHh-hhhhcCC--CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 171 LVFQSAA-LFDSLTVRENVGF-LLYENSK--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 171 ~v~Q~~~-l~~~lTV~eni~~-~~~~~~~--~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
++||... .++.+++.|++.. +...... ...++..+.+.++ ..+|||||+||+.|++|+.+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~l~g~~~~~~~i~~a~t~--- 162 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATN--- 162 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH-------------HHHHHTCCTTCCEEEEEEES---
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEccC---
Confidence 8888753 5666778888843 2211110 0111222222222 34688999999999999986
Q ss_pred CCCCCCcEEEEeCCC
Q 018638 247 KESVEPEVLLYDEPT 261 (352)
Q Consensus 247 ~~a~~p~llLLDEPt 261 (352)
+|++ +|++.
T Consensus 163 ----~p~~--ld~~l 171 (254)
T 1ixz_A 163 ----RPDI--LDPAL 171 (254)
T ss_dssp ----CGGG--SCGGG
T ss_pred ----Cchh--CCHHH
Confidence 4665 56654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-13 Score=125.00 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=52.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh------hhh
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD------EEI 164 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~------~~~ 164 (352)
.|+++|+.+.|+. +|+|.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...... ...
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGG
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhH
Confidence 5889998776642 566666 89999999999999999999999999999999999876332111 111
Q ss_pred ccceEEEEecC
Q 018638 165 SGLRIGLVFQS 175 (352)
Q Consensus 165 ~~~~ig~v~Q~ 175 (352)
.+.+++|++|+
T Consensus 81 ~~~~i~~v~~~ 91 (227)
T 1qhl_A 81 LKAGVCYSMLD 91 (227)
T ss_dssp BCSSEEEEEEE
T ss_pred hhcCcEEEEEe
Confidence 23469999974
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-13 Score=119.78 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=54.0
Q ss_pred eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 018638 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (352)
Q Consensus 111 sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~ 190 (352)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+.......... ...+++|+||++.+|+.+++.+|+.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPG--DQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTT--CCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchh--HhcCceEEeccHHHHHHHHhcCcEEe
Confidence 67888999999999999999999999999974 5788887654322111 12358999999888877777766544
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-11 Score=120.20 Aligned_cols=78 Identities=9% Similarity=0.219 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHcCCCCCCCCCCceE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGL----------DP---IASTVVEDLIRSV----HKKGENGLANPGNIAS 295 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgL----------D~---~~~~~l~~ll~~l----~~~g~~~~~~~~~~~t 295 (352)
|-+.++++++.. .+|+++++|||++.+ |+ ...+.+.+.+++| ++.+ +|
T Consensus 126 ~~l~~~~~l~~~-----~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~----------~t 190 (349)
T 2zr9_A 126 QALEIADMLVRS-----GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSG----------TT 190 (349)
T ss_dssp HHHHHHHHHHTT-----TCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT----------CE
T ss_pred HHHHHHHHHHhc-----CCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhC----------CE
Confidence 345578888752 469999999999998 33 2223445555555 3445 69
Q ss_pred EEEEcCCHH----------------HHHhhcCEEEEEeCCeEEEee
Q 018638 296 YVVVTHQHS----------------TIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 296 vIivTHdl~----------------~i~~~aDrv~vL~~G~iv~~g 325 (352)
||+++|-.. .+..+||.++.++.++++..|
T Consensus 191 VI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 191 AIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp EEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred EEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 999999643 256789999999887765554
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-13 Score=139.72 Aligned_cols=167 Identities=17% Similarity=0.116 Sum_probs=105.5
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc-eEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-GEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 95 ~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~-G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
++++.-||...+++++++.+.+|+.+.|+||||+|||||+++|++++++.. |.+.+++...... ...++++|
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-------~p~i~~~p 110 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-------MPRIKTVP 110 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-------SCEEEEEE
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-------CCcEEEEe
Confidence 344556788889999999999999999999999999999999999999987 8888877643221 12588887
Q ss_pred cCC----------------------CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHH
Q 018638 174 QSA----------------------ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM 231 (352)
Q Consensus 174 Q~~----------------------~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGq 231 (352)
+.. ..+..+++.+|+..........+. ..+......+.+|.-+........+|+|+
T Consensus 111 ~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~--v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 111 ACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPF--IDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp TTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCE--EECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred cchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCE--EEcCCCCHHhcCceEEechhhcCCccccc
Confidence 753 122233333333211000000000 00000011223332222223346799999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~ 278 (352)
+|++..++.... ++.+|++||... |++..+..+++.|.+
T Consensus 189 ~~~i~~g~~~~a-------~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 189 HERVEPGMIHRA-------HKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGGEECCHHHHT-------TTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccccCceeeec-------CCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999888887764 599999999988 899888888887764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.3e-11 Score=104.26 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=33.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCC-----------CceEEEECCEeC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAP-----------DKGEVYIRGRKR 155 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p-----------~~G~I~i~G~~~ 155 (352)
.++|+|+||||||||++.++|...| ++|+|.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 5899999999999999999998876 579999999754
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-10 Score=106.00 Aligned_cols=191 Identities=12% Similarity=0.018 Sum_probs=76.2
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH-cCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~-Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
+..+++||++++|++++|+||||||||||+++|+ |++++. +.+.+........ .....++|.|+++..|..++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~~ 88 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARK-GEKEGKDYYFVDREEFLRLC 88 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCT-TCCBTTTBEECCHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCc-cccCCCeEEEecHHHhhhhh
Confidence 4678999999999999999999999999999999 998652 2222211110000 00112446777655444443
Q ss_pred HHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHH-HHHH-HHhccCCCCCCCCcEEEEe
Q 018638 184 VRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV-ALAR-SIIFDNTKESVEPEVLLYD 258 (352)
Q Consensus 184 V~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRv-aIAr-AL~~~~~~~a~~p~llLLD 258 (352)
+.+++....... .+...+. +.++++.-. .-..+-.+. -...-++++ .-++ .++. .|+..+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~-~vild~~~~-g~~~~~~~~~~~~~~v~v~-------~~~~~~l~ 155 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNFYGVPRKN----LEDNVDKGV-STLLVIDWQ-GAFKFMEMMREHVVSIFIM-------PPSMEELR 155 (231)
T ss_dssp HTTCEEEEEEETTEEEEEECTT----HHHHHHHTC-EEEEECCHH-HHHHHHHHSGGGEEEEEEE-------CSCHHHHH
T ss_pred hcCceehhhhhccccCCCCHHH----HHHHHHcCC-eEEEEcCHH-HHHHHHHhcCCCeEEEEEE-------CCcHHHHH
Confidence 333332110000 0011111 233333311 111111000 001113332 1111 2232 35667788
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 259 EPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 259 EPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|++.+.|..+...+.+.|.....+ .+. ....+|+++|+++.+..-.++++-..+++
T Consensus 156 ~Rl~~R~~~~~~~i~~rl~~~~~~~~~~------~~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 156 RRLCGRRADDSEVVEARLKGAAFEISHC------EAYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp HC--------------CHHHHHHHHTTG------GGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhhh------cCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 999999988877777666554321 100 01468888999988877667665444444
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.8e-10 Score=98.25 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=31.1
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH 280 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~ 280 (352)
...|++|+. +|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~-------~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAE-------KNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHH-------HTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 456889987 49999999 99999999999998887653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.4e-11 Score=107.18 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=49.7
Q ss_pred eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 018638 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (352)
Q Consensus 111 sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~ 190 (352)
.++.++|++++|+||||||||||+++|+|.+ |.+.++|.++.. .....+..+|+++|++.+++.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS---PENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC---HHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc---HHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 4667899999999999999999999999987 899999876531 111122246788887655555555555543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.9e-11 Score=109.39 Aligned_cols=52 Identities=29% Similarity=0.517 Sum_probs=36.5
Q ss_pred ceEEEEeE-EEEe-CCeeeeEeeeEEEeC---CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 90 VLIDCRNV-YKSF-GEKHILRGVSFKIRH---GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 90 ~~l~~~nl-s~~y-~~~~~L~~vsl~i~~---Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+++|| +|+| ++..+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 9999 778899999999999 9999999999999999999999865
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.4e-10 Score=96.73 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=49.1
Q ss_pred eee--EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE--eCCCCCCh--hhhccceEEEEecCCC
Q 018638 105 HIL--RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR--KRAGLISD--EEISGLRIGLVFQSAA 177 (352)
Q Consensus 105 ~~L--~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~--~~~~~~~~--~~~~~~~ig~v~Q~~~ 177 (352)
..+ +++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++...... .......|.++||++.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 356 7899999999 99999999999999999999999887765432221 11000000 0011235999999863
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-09 Score=106.85 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=35.7
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE-EECCEe
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-YIRGRK 154 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I-~i~G~~ 154 (352)
=+++|+++.|.||+|||||||+..+++...+..|.| +++++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 378999999999999999999999999887777765 555543
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-10 Score=106.20 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=55.1
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH---cCCCCCceEEE--------ECCEeCCCCCChhhhccceEE
Q 018638 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA---GLLAPDKGEVY--------IRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 102 ~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~---Gl~~p~~G~I~--------i~G~~~~~~~~~~~~~~~~ig 170 (352)
+...++++.+ ++|++++|+|||||||||++++|+ |+..|++|.|+ .+|.++......... ..+++
T Consensus 15 ~~~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~-~~~~~ 90 (252)
T 4e22_A 15 PGRLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPL-AAHLD 90 (252)
T ss_dssp --------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHH-HHTCC
T ss_pred cchhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHH-HHcCC
Confidence 3333444543 789999999999999999999999 99999999999 888876432222222 23588
Q ss_pred EEecCCC-----CCCCCCHHHHH
Q 018638 171 LVFQSAA-----LFDSLTVRENV 188 (352)
Q Consensus 171 ~v~Q~~~-----l~~~lTV~eni 188 (352)
++||... ++...++.+|+
T Consensus 91 ~~~~~~~~~~~~~l~~~~v~~~i 113 (252)
T 4e22_A 91 VRFVSQNGQLQVILEGEDVSNEI 113 (252)
T ss_dssp EEEEEETTEEEEEETTEECTTGG
T ss_pred EEEecCCCCceEEECCeehhHHH
Confidence 9997531 22334565655
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-08 Score=96.91 Aligned_cols=141 Identities=18% Similarity=0.280 Sum_probs=86.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC-----------CCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHH
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA-----------PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVREN 187 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~-----------p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~en 187 (352)
+++|+|++|||||||++.|+|... |+.|.|.++|.++.-. + ..|++.+.+. ..|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~----D----T~G~i~~lp~----~lve~f 248 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV----D----TVGFIRGIPP----QIVDAF 248 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE----E----CCCBCSSCCG----GGHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE----e----CCCchhcCCH----HHHHHH
Confidence 399999999999999999999876 6778999988653100 0 1344444321 112110
Q ss_pred ---HHhhh------hhcCC-CCH---HHHHHHHHHHHHHcCCCccc----ccCCCCCChHHHHHHHHH----HHH-hccC
Q 018638 188 ---VGFLL------YENSK-MRD---EQISELVKENLAAVGLKGVE----DRLPSELSGGMKKRVALA----RSI-IFDN 245 (352)
Q Consensus 188 ---i~~~~------~~~~~-~~~---~~~~~~v~~~l~~~gL~~~~----~~~~~~LSGGqrQRvaIA----rAL-~~~~ 245 (352)
+.... ..... ... .+..+.+.++++.+++.+.. ..++..+|+|++||+.++ +++ ..
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~-- 326 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP-- 326 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC--
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCC--
Confidence 00000 00000 111 22223356777877765432 345677898999998887 554 31
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~ 282 (352)
+|++ +|+|++|......+++.|.++...
T Consensus 327 -----~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 327 -----IFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp -----EEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred -----CCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 2444 899999999999999999887543
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-10 Score=101.41 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=48.1
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE--EECCEeC
Q 018638 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV--YIRGRKR 155 (352)
Q Consensus 95 ~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I--~i~G~~~ 155 (352)
+|++..++...+.+.+++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 477888888888899999999999999999999999999999999987 77988 8888654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-09 Score=105.43 Aligned_cols=84 Identities=21% Similarity=0.160 Sum_probs=62.1
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC----hhhhc---cceEEEE-ecCCCC
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEIS---GLRIGLV-FQSAAL 178 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~----~~~~~---~~~ig~v-~Q~~~l 178 (352)
+++++|++++|++++|+|+||+||||++..|++.+.+..|+|.+.+.|...... ..+.. +.++.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 478999999999999999999999999999999999999999998877542110 11111 3468999 777555
Q ss_pred CCCCCHHHHHHh
Q 018638 179 FDSLTVRENVGF 190 (352)
Q Consensus 179 ~~~lTV~eni~~ 190 (352)
.|..++++++..
T Consensus 175 ~p~~~~~~~l~~ 186 (320)
T 1zu4_A 175 DPASVVFDAIKK 186 (320)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 554445555543
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.1e-11 Score=121.32 Aligned_cols=144 Identities=14% Similarity=0.228 Sum_probs=95.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+.+++++.+.|....+++++++++++| +.|+||||+|||||+++|++... .+.|.++|.++........ ..++.
T Consensus 40 k~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~--~~~v~ 113 (499)
T 2dhr_A 40 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVG--AARVR 113 (499)
T ss_dssp HHHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHH--HHHHH
T ss_pred HHHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhH--HHHHH
Confidence 345666666676667899999999999 99999999999999999999875 7899999876543211111 12467
Q ss_pred EEecCCC-CCCCCCHHHHHHhhhhhcC-C--CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 171 LVFQSAA-LFDSLTVRENVGFLLYENS-K--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 171 ~v~Q~~~-l~~~lTV~eni~~~~~~~~-~--~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
.+||... ..+...+.|+|........ . ...++..+.+.+++. +||||++|+..|++|..+
T Consensus 114 ~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn--- 177 (499)
T 2dhr_A 114 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATN--- 177 (499)
T ss_dssp HHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCS---
T ss_pred HHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecC---
Confidence 7888764 4556666677743211111 0 112222333334433 477888888888888865
Q ss_pred CCCCCCcEEEEeCCCC
Q 018638 247 KESVEPEVLLYDEPTA 262 (352)
Q Consensus 247 ~~a~~p~llLLDEPts 262 (352)
+|++ |||+.-
T Consensus 178 ----~p~~--LD~aLl 187 (499)
T 2dhr_A 178 ----RPDI--LDPALL 187 (499)
T ss_dssp ----CGGG--SCTTTS
T ss_pred ----Chhh--cCcccc
Confidence 4766 787765
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-08 Score=97.99 Aligned_cols=125 Identities=20% Similarity=0.220 Sum_probs=79.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhc
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN 195 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~ 195 (352)
..-.++|+|++|+|||||++.++|.. +. ..+.+... ....++.+.++.. .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~-----~~~~~~~t-------~~~~~~~~~~~~~-----------~------ 215 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PE-----IASYPFTT-------RGINVGQFEDGYF-----------R------ 215 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CE-----EECCTTCS-------SCEEEEEEEETTE-----------E------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-Cc-----cCCCCCee-------eceeEEEEEecCc-----------e------
Confidence 34579999999999999999999865 22 11111110 0113455544311 0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEe-CCCCCCCHHHHHHHHH
Q 018638 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD-EPTAGLDPIASTVVED 274 (352)
Q Consensus 196 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLD-EPtsgLD~~~~~~l~~ 274 (352)
+..++.....+..+.++|+|++|++. +.+... ++-++++| +|+.++|......+++
T Consensus 216 ---------------~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~a-------d~illV~D~s~~~~~~~~~~~~~~~ 272 (357)
T 2e87_A 216 ---------------YQIIDTPGLLDRPISERNEIEKQAIL-ALRYLG-------NLIIYIFDPSEHCGFPLEEQIHLFE 272 (357)
T ss_dssp ---------------EEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTC-------SEEEEEECTTCTTSSCHHHHHHHHH
T ss_pred ---------------EEEEeCCCccccchhhhhHHHHHHHH-HHHhcC-------CEEEEEEeCCccccCCHHHHHHHHH
Confidence 00111222334567789999999876 444432 57899999 9999999998877777
Q ss_pred HHHHHHHcCCCCCCCCCCceEEEEEc--CCHH
Q 018638 275 LIRSVHKKGENGLANPGNIASYVVVT--HQHS 304 (352)
Q Consensus 275 ll~~l~~~g~~~~~~~~~~~tvIivT--Hdl~ 304 (352)
.+.++.. + ..+|+|. ||+.
T Consensus 273 ~i~~~~~-~----------~piilV~NK~Dl~ 293 (357)
T 2e87_A 273 EVHGEFK-D----------LPFLVVINKIDVA 293 (357)
T ss_dssp HHHHHTT-T----------SCEEEEECCTTTC
T ss_pred HHHHhcC-C----------CCEEEEEECcccC
Confidence 6665432 3 3677777 8874
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-08 Score=88.76 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=30.3
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G 146 (352)
++|++|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999978766
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=4.5e-09 Score=93.27 Aligned_cols=127 Identities=18% Similarity=0.222 Sum_probs=72.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (352)
+++|+|+|||||||+.++|+++ |...+++.++ .+ .+. .+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~---------~~-~~~--------~~~----------------- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV---------AR-EVV--------AKD----------------- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH---------HH-HTT--------CSS-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH---------HH-HHc--------cCC-----------------
Confidence 6899999999999999999994 5555543211 00 000 000
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 018638 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (352)
Q Consensus 199 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~ 278 (352)
. ..+.++.+.+|...+ .+.|+.+|..+++.+.. +|+.+..+ .+.++|.....+.+.+..
T Consensus 44 ~-----~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~-------~~~~~~~l--~~~~~p~v~~~~~~~~~~ 102 (206)
T 1jjv_A 44 S-----PLLSKIVEHFGAQIL-------TEQGELNRAALRERVFN-------HDEDKLWL--NNLLHPAIRERMKQKLAE 102 (206)
T ss_dssp C-----HHHHHHHHHHCTTCC-------------CHHHHHHHHHT-------CHHHHHHH--HHHHHHHHHHHHHHHHHT
T ss_pred h-----HHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhC-------CHHHHHHH--HhccCHHHHHHHHHHHHh
Confidence 0 012344555554322 36789999999988875 36543322 334556555555544432
Q ss_pred HHHcCCCCCCCCCCceEEEEEcCCHHHH--HhhcCEEEEEeC
Q 018638 279 VHKKGENGLANPGNIASYVVVTHQHSTI--RRAVDRLIFLYE 318 (352)
Q Consensus 279 l~~~g~~~~~~~~~~~tvIivTHdl~~i--~~~aDrv~vL~~ 318 (352)
. .+ .++|+.+|.+.+. ...||++++++-
T Consensus 103 ~--~~----------~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 103 Q--TA----------PYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp C--CS----------SEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred c--CC----------CEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 2 12 2788889988765 677899999864
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.3e-08 Score=104.66 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=56.0
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE-E
Q 018638 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA-GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV-V 299 (352)
Q Consensus 222 ~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts-gLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi-v 299 (352)
..+.-+|.|+.+|..++++++. ++++||+|||.. +||......+++.+.....+. .+|++ +
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~-------~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~----------~iIl~SA 248 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLS-------RYSCIILDEAHERTLATDILMGLLKQVVKRRPDL----------KIIIMSA 248 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCT-------TEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTC----------EEEEEES
T ss_pred CCEEEECHHHHHHHHhhCcccc-------CCCEEEecCccccccchHHHHHHHHHHHHhCCCc----------eEEEEec
Confidence 3456789999999999998875 699999999996 999876655555554433222 46777 5
Q ss_pred cCCHHHHHhhcCE
Q 018638 300 THQHSTIRRAVDR 312 (352)
Q Consensus 300 THdl~~i~~~aDr 312 (352)
||+.+.+.++.+.
T Consensus 249 T~~~~~l~~~~~~ 261 (773)
T 2xau_A 249 TLDAEKFQRYFND 261 (773)
T ss_dssp CSCCHHHHHHTTS
T ss_pred cccHHHHHHHhcC
Confidence 9999888888764
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.7e-08 Score=98.94 Aligned_cols=126 Identities=18% Similarity=0.309 Sum_probs=80.6
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
++++...|.....++++++.+++| +.|+||+|+|||||+++|++.... .+-++.
T Consensus 28 l~e~v~~l~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------~f~~is 81 (476)
T 2ce7_A 28 LKEVVEFLKDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------PFFHIS 81 (476)
T ss_dssp HHHHHHHHHCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------CEEEEE
T ss_pred HHHHHHHhhChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------CeeeCC
Confidence 334433344445677888888888 889999999999999999983210 011111
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
-. . +... ... .|++++|..+++|... .|.
T Consensus 82 ~~-~-~~~~----------------------------------------~~g--~~~~~~r~lf~~A~~~-------~p~ 110 (476)
T 2ce7_A 82 GS-D-FVEL----------------------------------------FVG--VGAARVRDLFAQAKAH-------APC 110 (476)
T ss_dssp GG-G-TTTC----------------------------------------CTT--HHHHHHHHHHHHHHHT-------CSE
T ss_pred HH-H-HHHH----------------------------------------Hhc--ccHHHHHHHHHHHHhc-------CCC
Confidence 00 0 0000 000 1677888889998875 599
Q ss_pred EEEEeCC----------CCCCCHHHHHHHHHHHHHHHH----cCCCCCCCCCCceEEEEEcCCHHHH
Q 018638 254 VLLYDEP----------TAGLDPIASTVVEDLIRSVHK----KGENGLANPGNIASYVVVTHQHSTI 306 (352)
Q Consensus 254 llLLDEP----------tsgLD~~~~~~l~~ll~~l~~----~g~~~~~~~~~~~tvIivTHdl~~i 306 (352)
||++||+ +.+.|......+.+++..+.. .+ ..||.+||+.+.+
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~----------viVIaaTn~~~~L 167 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG----------IIVMAATNRPDIL 167 (476)
T ss_dssp EEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT----------EEEEEEESCGGGS
T ss_pred EEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC----------EEEEEecCChhhh
Confidence 9999999 447777777777778777742 22 6899999998654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-07 Score=91.95 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=35.8
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc--CCCCCceEEEECC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG--LLAPDKGEVYIRG 152 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G--l~~p~~G~I~i~G 152 (352)
..+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++-..
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 358999999999 899999999999999999999 7788878765443
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.3e-07 Score=90.03 Aligned_cols=128 Identities=11% Similarity=0.161 Sum_probs=81.7
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~ 185 (352)
.|+.+.--+.+|+++.|.|++|+|||||+.-++.-... .| ..+.|+.= .++..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-------~g--------------~~Vl~fSl------Ems~~ 87 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-------DD--------------RGVAVFSL------EMSAE 87 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-------TT--------------CEEEEEES------SSCHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cC--------------CeEEEEeC------CCCHH
Confidence 35555556899999999999999999999888764322 11 12444321 23443
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCC
Q 018638 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (352)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD 265 (352)
+.+ .++......+.+..+.+ ..||.+++||++.|...+. +++++|.|+|...+
T Consensus 88 ql~----------------~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~-------~~~l~I~d~~~~si- 140 (338)
T 4a1f_A 88 QLA----------------LRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLS-------QKKLFFYDKSYVRI- 140 (338)
T ss_dssp HHH----------------HHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHH-------HSCEEEECCTTCCH-
T ss_pred HHH----------------HHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHh-------cCCeEEeCCCCCcH-
Confidence 322 22222222222222222 4799999999999999886 48999999997543
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCCCCCCceEEEEEc
Q 018638 266 PIASTVVEDLIRSVHKKG-ENGLANPGNIASYVVVT 300 (352)
Q Consensus 266 ~~~~~~l~~ll~~l~~~g-~~~~~~~~~~~tvIivT 300 (352)
.++...++++.++. + ..+|+|-
T Consensus 141 ----~~i~~~ir~l~~~~gg---------~~lIVID 163 (338)
T 4a1f_A 141 ----EQIRLQLRKLKSQHKE---------LGIAFID 163 (338)
T ss_dssp ----HHHHHHHHHHHHHCTT---------EEEEEEE
T ss_pred ----HHHHHHHHHHHHhcCC---------CCEEEEe
Confidence 35666777776552 2 5777774
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.5e-07 Score=87.76 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=37.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCCCCCCCCCceEEEEEcCCHHHHHhh
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHK---KGENGLANPGNIASYVVVTHQHSTIRRA 309 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~---~g~~~~~~~~~~~tvIivTHdl~~i~~~ 309 (352)
+|.+|++||+... |+.....+..++.++.. .+ .++|++||+.+....+
T Consensus 125 ~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~----------~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 125 LYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFR----------IALVIVGHNDAVLNNL 175 (389)
T ss_dssp CCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCC----------EEEEEEESSTHHHHTS
T ss_pred CeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCC----------EEEEEEECCchHHHHh
Confidence 5889999999876 88888888888776654 23 6899999998655444
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.7e-08 Score=84.86 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEE
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYI 150 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i 150 (352)
+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999999874 5566654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.6e-08 Score=84.55 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=24.9
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
..+++||||++.+|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999765
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.41 E-value=3e-09 Score=102.53 Aligned_cols=55 Identities=25% Similarity=0.415 Sum_probs=45.6
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCc------EEEEEcCCCchHHHHHHHHHcCCC--CCceEEE
Q 018638 95 RNVYKSFGEKHILRGVSFKIRHGE------AVGIIGPSGTGKSTILKIIAGLLA--PDKGEVY 149 (352)
Q Consensus 95 ~nls~~y~~~~~L~~vsl~i~~Ge------~~~IiGpNGsGKSTLlk~l~Gl~~--p~~G~I~ 149 (352)
+.|++.|++..+|++++..+.+++ ++||+||||||||||+++|++++. |+.|.|.
T Consensus 64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~ 126 (321)
T 3tqc_A 64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVE 126 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEE
Confidence 345566778889999999999887 999999999999999999999987 3444433
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.4e-08 Score=102.89 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=45.7
Q ss_pred eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CceEEEECCEeCCCCCChhhhccceEEEEecCCCCC
Q 018638 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179 (352)
Q Consensus 111 sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p--~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~ 179 (352)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| ++|..+.... ..+. ++.+++.+|...++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~-~~e~-~~giti~~~~~~~~ 70 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYT-PEAK-LHRTTVRTGVAPLL 70 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCS-HHHH-HTTSCCSCEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCC-HHHH-hcCCeEEecceEEe
Confidence 467889999999999999999999999987665 67888 6776554432 2221 22466766665544
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7.6e-08 Score=87.44 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=36.5
Q ss_pred eeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 110 vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
-+.+.++|++++|+|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 3445679999999999999999999999998 78899988753
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.34 E-value=5.5e-08 Score=86.46 Aligned_cols=43 Identities=23% Similarity=0.209 Sum_probs=38.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
..++|++++|+|+||||||||+++|++++++..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3578999999999999999999999999998899998876554
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.27 E-value=5.2e-09 Score=101.21 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=56.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
+++.+++.+.|+.+.+++++++++.+|.+++|+|++|+|||||++.|++.+.+..|+|.+-+.+.
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 46667777778777889999999999999999999999999999999999988888888766654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.5e-07 Score=83.13 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=26.9
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+...+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4445899999999999999999999999876
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.25 E-value=4e-07 Score=81.40 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=30.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEE
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVY 149 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~ 149 (352)
++|++++|+||||||||||+++|++.++| ..+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~ 41 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS 41 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence 57999999999999999999999999987 334443
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-07 Score=95.74 Aligned_cols=107 Identities=25% Similarity=0.256 Sum_probs=61.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce-EEE-ECCEeCCC-C-----CChhh--hccceEEEEecCCCCCCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVY-IRGRKRAG-L-----ISDEE--ISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G-~I~-i~G~~~~~-~-----~~~~~--~~~~~ig~v~Q~~~l~~~l 182 (352)
.+++|++++|+|+||||||||+++|+|++.|++| +|. ++|.++.. . ..... ...+++++++|+ +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~------l 438 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE------I 438 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH------H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH------H
Confidence 5789999999999999999999999999999987 785 88865421 0 00100 001135666664 1
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC--CCcccccCCCCCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVG--LKGVEDRLPSELS 228 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g--L~~~~~~~~~~LS 228 (352)
++.+|+.+.. ...+.....+.+.++++.+| +.-+++..+..+.
T Consensus 439 ~~~~~ivi~~---~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~ 483 (552)
T 3cr8_A 439 TKNRGIAICA---PIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCE 483 (552)
T ss_dssp HHTTCEEEEC---CCCCCHHHHHHHHHHHHTTSEEEEEEECC------
T ss_pred HhcCCEEEEe---cCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHH
Confidence 2223332211 11122344566788888887 4444444444443
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-07 Score=79.79 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=32.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999975 8889988654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-07 Score=91.80 Aligned_cols=139 Identities=12% Similarity=0.135 Sum_probs=82.9
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCC-CCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA-LFDSL 182 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~-l~~~l 182 (352)
..+|+++|+.+++|++++|+||||||||||+++|+|. ..|++.... ... ... ...+|++||.+. ++++.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~---~~~--~~~lg~~~q~~~~l~dd~ 225 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL---DRL--NFELGVAIDQFLVVFEDV 225 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT---TTH--HHHHGGGTTCSCEEETTC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc---hhH--HHHHHHhcchhHHHHHHH
Confidence 3589999999999999999999999999999999995 467776511 110 110 113667777754 23333
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHH---HcCCC-------------cccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLA---AVGLK-------------GVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~---~~gL~-------------~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
+...++.- .............+...++ .+.+. ...+.....+++|++||++.+.+++.
T Consensus 226 ~~~~~~~r---~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~--- 299 (377)
T 1svm_A 226 KGTGGESR---DLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRP--- 299 (377)
T ss_dssp CCSTTTTT---TCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCC---
T ss_pred HHHHHHHh---hccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCC---
Confidence 32221100 0000000000112233333 00011 23455667899999999998877764
Q ss_pred CCCCCCcEEE-EeCCCC
Q 018638 247 KESVEPEVLL-YDEPTA 262 (352)
Q Consensus 247 ~~a~~p~llL-LDEPts 262 (352)
.|++++ ||+|+.
T Consensus 300 ----~pDLliyLd~~~~ 312 (377)
T 1svm_A 300 ----KDYLKHCLERSEF 312 (377)
T ss_dssp ----CHHHHHHHHTCTH
T ss_pred ----CCCeEEEEeCCHH
Confidence 588777 888876
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=9.2e-07 Score=78.35 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=29.1
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
++-=++++|++++|+|++|||||||+++|++.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3344678899999999999999999999999864
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=5.5e-08 Score=87.08 Aligned_cols=59 Identities=29% Similarity=0.369 Sum_probs=42.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC---CCCceEEEE--------CCEeCCCCCChhhhccceEEEEecCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL---APDKGEVYI--------RGRKRAGLISDEEISGLRIGLVFQSA 176 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~---~p~~G~I~i--------~G~~~~~~~~~~~~~~~~ig~v~Q~~ 176 (352)
+.+++|+||+||||||++++|++.+ .+++|.++. +|.++.......+. ..++++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPL-ASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHH-HHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHH-HHhCceeeecc
Confidence 5689999999999999999999766 788999887 56553210001111 22588888864
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.14 E-value=3.4e-07 Score=86.92 Aligned_cols=158 Identities=13% Similarity=0.131 Sum_probs=83.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCC---CCCCCCHHHH-HHhh
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA---LFDSLTVREN-VGFL 191 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~---l~~~lTV~en-i~~~ 191 (352)
++.+++|+|++|+|||||++.|.|.. +.+...... .. .....|+++++.. +++ |.... -...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~----tT--r~~~~gi~~~~~~~i~~iD--TpG~~~~~~~ 72 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQ----TT--RHRIVGIHTEGAYQAIYVD--TPGLHMEEKR 72 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSS----CC--SSCEEEEEEETTEEEEEES--SSSCCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCC----cc--eeeEEEEEEECCeeEEEEE--CcCCCccchh
Confidence 34589999999999999999999963 222111100 00 1123566766532 111 11000 0000
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHH-H
Q 018638 192 LYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA-S 269 (352)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~-~ 269 (352)
. . .+...+.+..+++.+++--+ .+. .. +|+|++ .+++.+.. ...|.++++ +.+|... +
T Consensus 73 ~-----l-~~~~~~~~~~~l~~~D~vl~Vvd~-~~-~~~~~~---~i~~~l~~-----~~~P~ilvl----NK~D~~~~~ 132 (301)
T 1ega_A 73 A-----I-NRLMNKAASSSIGDVELVIFVVEG-TR-WTPDDE---MVLNKLRE-----GKAPVILAV----NKVDNVQEK 132 (301)
T ss_dssp H-----H-HHHHTCCTTSCCCCEEEEEEEEET-TC-CCHHHH---HHHHHHHS-----SSSCEEEEE----ESTTTCCCH
T ss_pred h-----H-HHHHHHHHHHHHhcCCEEEEEEeC-CC-CCHHHH---HHHHHHHh-----cCCCEEEEE----ECcccCccH
Confidence 0 0 00000001111222222212 222 23 898886 56666652 135889998 7899876 6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 270 ~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
..+.+.+.++.+... . ...+.+++|+-+-+..+.|.+.
T Consensus 133 ~~~~~~l~~l~~~~~--~-----~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 133 ADLLPHLQFLASQMN--F-----LDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHHHHTTSC--C-----SEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--c-----CceEEEECCCCCCHHHHHHHHH
Confidence 778888888876421 0 0356777887766666666543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.13 E-value=4.2e-06 Score=83.67 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=34.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~ 154 (352)
++.+++++||+||||||++..|++.+.+..++|.+-+.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 588999999999999999999999998887888775554
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.12 E-value=7.4e-08 Score=92.30 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=44.5
Q ss_pred EEEeCCeeeeEeeeEEEeCCcE--EEEEcCCCchHHHHHHHHHcCCCCCceEEEE
Q 018638 98 YKSFGEKHILRGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (352)
Q Consensus 98 s~~y~~~~~L~~vsl~i~~Ge~--~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i 150 (352)
+..||...+++.++..|..|++ +.+.||+|+||||+++++++.+.+..+.+.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 3346777789999999999998 9999999999999999999988776654433
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=98.08 E-value=5.8e-08 Score=99.66 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=52.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~ 153 (352)
+-++++.+.|+...+++++++++ +|++++|+||||+|||||+++|++++.+..|+|.+.|.
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred ccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 33566777776667889999998 89999999999999999999999999999999988774
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.5e-05 Score=68.36 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=24.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceE
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGE 147 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~ 147 (352)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 47999999999999999999987766653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.8e-06 Score=78.33 Aligned_cols=122 Identities=11% Similarity=0.139 Sum_probs=71.8
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCH
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV 184 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV 184 (352)
..|+.+.--+++|+++.|.|++|+|||||+..++.-..- .| ..+.|+.=+ ++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-------~g--------------~~vl~~slE------~s~ 108 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-------ND--------------DVVNLHSLE------MGK 108 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-------TT--------------CEEEEEESS------SCH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cC--------------CeEEEEECC------CCH
Confidence 346666656899999999999999999998888742110 01 124443321 344
Q ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCC
Q 018638 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264 (352)
Q Consensus 185 ~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgL 264 (352)
.+-..- +......+.+..+.+.. ..||.++++|+..|...+. ++++++.|+|...
T Consensus 109 ~~l~~R----------------~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~-------~~~i~i~d~~~~~- 163 (315)
T 3bh0_A 109 KENIKR----------------LIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEIS-------NSNINIFDKAGQS- 163 (315)
T ss_dssp HHHHHH----------------HHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHH-------TSCEEEECCSCCB-
T ss_pred HHHHHH----------------HHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHh-------CCCEEEECCCCCC-
Confidence 332211 11111111111221111 2388899999998888875 4788888888643
Q ss_pred CHHHHHHHHHHHHHHHHc
Q 018638 265 DPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 265 D~~~~~~l~~ll~~l~~~ 282 (352)
..++...++++.++
T Consensus 164 ----~~~i~~~i~~l~~~ 177 (315)
T 3bh0_A 164 ----VNYIWSKTRQTKRK 177 (315)
T ss_dssp ----HHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHh
Confidence 33455666666554
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=6.8e-07 Score=89.29 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=44.5
Q ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH-HHHHhhcCEEEE-EeCCeEEEeecc
Q 018638 251 EPEVLLYDEPTAGLDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRLIF-LYEGKIVWQGMT 327 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~-~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl-~~i~~~aDrv~v-L~~G~iv~~g~~ 327 (352)
+|++|++||+..-.+. ..+..++..+..+.+.| ..+|++||+. ..+..+.+++.- +..|.++...++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~----------~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG----------KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT----------CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC----------CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 4999999999876654 67888899998887766 4788899973 322222222222 345666555544
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.7e-06 Score=74.02 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
.|++++|+||||||||||+++|++.+.+ +++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 55654
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.5e-05 Score=75.37 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=25.8
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999998874
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=5.7e-05 Score=72.09 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-+++|+++.|.||+|+|||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999988864
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.92 E-value=9.8e-07 Score=84.09 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~ 144 (352)
..+..+.|.||+|+|||||++.+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2e-06 Score=74.36 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=32.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCce--EEEECCEe
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRK 154 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G--~I~i~G~~ 154 (352)
.+|++++|+|++||||||++++|++.+++ .| .|.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChH
Confidence 46999999999999999999999998866 56 66666644
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=6.9e-06 Score=69.96 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=25.2
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445566655 999999999999999999873
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.89 E-value=7.1e-07 Score=89.08 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=50.4
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCC
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~ 156 (352)
.+++++.|+... ++++|+ ++++++++|+|||||||++..|++.+.+..|+|.+.+.|..
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 446777787654 688888 89999999999999999999999999999999999876653
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.3e-06 Score=82.89 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=36.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
+++.+++|+|++|||||||++.|+|.+.++.|+|.+.+.++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 45789999999999999999999999988889888877654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=8.9e-06 Score=80.91 Aligned_cols=165 Identities=14% Similarity=0.068 Sum_probs=85.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC------------CCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLA------------PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~------------p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~ 185 (352)
-.++|+|+||+|||||++.|+|... |.+|.+.++|+++.-+..... ++..++.+|....|..++..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~--~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL--RRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-------------CCSCCHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCC--ccccccchhhHHHHHHHHHH
Confidence 3799999999999999999999864 678999999986422111111 11244555665556555555
Q ss_pred HHHHhhh------hhcCCCCHHHHHHHHHHHHHHcCCCc-----ccccCCC-CCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 186 ENVGFLL------YENSKMRDEQISELVKENLAAVGLKG-----VEDRLPS-ELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 186 eni~~~~------~~~~~~~~~~~~~~v~~~l~~~gL~~-----~~~~~~~-~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
+++...- ....+.... ...+.+.+...+..- ..|.... +-+--+ -.-.+++.+... ...+
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~--~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~-----~~~~ 330 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQ--DQRMAGLMERRGRASVVVFNKWDLVVHREKRYDE-FTKLFREKLYFI-----DYSP 330 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHH--HHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHH-HHHHHHHHCGGG-----TTSC
T ss_pred HHHhhCCEEEEEEeCCCCCCHH--HHHHHHHHHHcCCCEEEEEECccCCCchhhHHHH-HHHHHHHHhccC-----CCCc
Confidence 6654421 111112222 234555666655421 1111110 111111 111344544321 1234
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
++ ++|++.-....++++.+.+...+. +.-+.|+.++.+.
T Consensus 331 ~~----~~SA~~g~gv~~l~~~i~~~~~~~-----------~~~i~t~~ln~~l 369 (439)
T 1mky_A 331 LI----FTSADKGWNIDRMIDAMNLAYASY-----------TTKVPSSAINSAL 369 (439)
T ss_dssp EE----ECBTTTTBSHHHHHHHHHHHHHHH-----------TCCCCHHHHHHHH
T ss_pred EE----EEECCCCCCHHHHHHHHHHHHHhh-----------cccCCHHHHHHHH
Confidence 44 489999989999988888765542 2344677776543
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.86 E-value=2.8e-05 Score=72.36 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++..+.|.||+|+|||||++.+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46678999999999999999999844
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.86 E-value=5.1e-06 Score=75.71 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=32.7
Q ss_pred eeEeeeEEEe---CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC
Q 018638 106 ILRGVSFKIR---HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (352)
Q Consensus 106 ~L~~vsl~i~---~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~ 151 (352)
-|.++||++. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3667777776 8999999999999999999999999887 6676543
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.83 E-value=1.7e-06 Score=85.32 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=46.6
Q ss_pred eEEEEeEEEEeCC-eeeeE--------------eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 91 LIDCRNVYKSFGE-KHILR--------------GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 91 ~l~~~nls~~y~~-~~~L~--------------~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-+.++||++.|+. +..|+ |+++.|.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3789999999975 56899 899999999999999999999999999999875
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.1e-06 Score=75.39 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=37.9
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce--EEEECCEe
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRK 154 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G--~I~i~G~~ 154 (352)
+.+++|.+++|+|++||||||+.+.|++.+.|+.| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45678999999999999999999999999988888 88887643
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=4.1e-06 Score=73.60 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=38.4
Q ss_pred EEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--------CCCCceEEEECCE
Q 018638 98 YKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--------LAPDKGEVYIRGR 153 (352)
Q Consensus 98 s~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--------~~p~~G~I~i~G~ 153 (352)
+++|++ ..+++++|++.+++. ++|+|++|+|||||++.+.+- ..++.+.+.++|.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 345654 368899999988885 789999999999999999872 2334566666653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.74 E-value=6.8e-07 Score=84.99 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=49.2
Q ss_pred EEeEEEEeCCeeeeEe-eeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 94 CRNVYKSFGEKHILRG-VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~-vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
.+++.+.|++.. ++ ++|+++ |++++++|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 456666676543 56 888876 999999999999999999999999998889999877664
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00019 Score=71.41 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=94.1
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce-EE-EECCEeCCCCCChhhhccceEEEEecCCCCCCCC
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EV-YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G-~I-~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
..|+.+.--+++|+++.|.|++|+|||||+.-++.-.....| .| +|..+ .+......+-+ .+... ++..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE-----~~~~~l~~R~~---~~~~~-i~~~ 258 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE-----MPAAQLTLRMM---CSEAR-IDMN 258 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-----SCHHHHHHHHH---HHHTT-CCTT
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-----CCHHHHHHHHH---HHHcC-CCHH
Confidence 346666555899999999999999999999888765432222 22 22221 01111110000 00000 0000
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
.++ ....+.++. +++.++++.+.-....-.....+|..+. .+.+|.+... .+++++++|..+.
T Consensus 259 ~l~---------~g~l~~~~~-~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~-----~~~~lIvID~l~~ 321 (444)
T 2q6t_A 259 RVR---------LGQLTDRDF-SRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQ-----NQVGLIIIDYLQL 321 (444)
T ss_dssp TCC---------GGGCCHHHH-HHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHH-----SCCCEEEEECGGG
T ss_pred HHh---------CCCCCHHHH-HHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHH-----cCCCEEEEcChhh
Confidence 000 001233322 2333444433222222122346676654 4566666642 3699999999876
Q ss_pred CCCH----------HHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCC-------------HH------HHHhhcCE
Q 018638 263 GLDP----------IASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQ-------------HS------TIRRAVDR 312 (352)
Q Consensus 263 gLD~----------~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHd-------------l~------~i~~~aDr 312 (352)
-.+. .....+...|+.++++ + ++||+++|- ++ .+...||.
T Consensus 322 ~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~----------v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~ 391 (444)
T 2q6t_A 322 MSGPGSGKSGENRQQEIAAISRGLKALARELG----------IPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADL 391 (444)
T ss_dssp CBCC-------CHHHHHHHHHHHHHHHHHHHT----------SCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSE
T ss_pred cCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhC----------CeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCE
Confidence 4432 1224556667777665 4 689999882 11 35678999
Q ss_pred EEEEeC
Q 018638 313 LIFLYE 318 (352)
Q Consensus 313 v~vL~~ 318 (352)
|++|..
T Consensus 392 vi~L~r 397 (444)
T 2q6t_A 392 VMFIYR 397 (444)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999953
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.73 E-value=2.2e-05 Score=68.28 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=27.3
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--------CCCCceEEEECCE
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--------LAPDKGEVYIRGR 153 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--------~~p~~G~I~i~G~ 153 (352)
.++++++++.++. .++|+|++|+|||||++.+.+- ..++.+++.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4789999998887 6789999999999999999972 2233456666653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.8e-06 Score=84.16 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=39.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
.+.+.|+++.|+.+.++++++|+| +|+|++|+|||||++.|.|...+..|.+...+
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 488999999998888999999987 99999999999999999988766656544333
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.70 E-value=5.6e-05 Score=73.55 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.6
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+++|+++.|.|++|+|||||...++.-
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999887754
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.67 E-value=2.7e-05 Score=73.34 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=26.7
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.++++..+.|.||+|+|||||+++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788899999999999999999999865
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.67 E-value=4.4e-05 Score=65.36 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999865
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=4e-05 Score=68.41 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=24.6
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
.+.++++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666654 99999999999999999885
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.57 E-value=1.4e-05 Score=69.39 Aligned_cols=41 Identities=34% Similarity=0.423 Sum_probs=33.7
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE-ECC
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-IRG 152 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~-i~G 152 (352)
+...+|.++.|+|++||||||+.+.|+..+.+..|.+. +++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 34457999999999999999999999998887777664 444
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=3.5e-05 Score=67.07 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=26.8
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999999999999875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00011 Score=62.16 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.50 E-value=4e-05 Score=67.26 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+++|+|+|||||||+.++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.50 E-value=9.4e-05 Score=71.85 Aligned_cols=32 Identities=34% Similarity=0.555 Sum_probs=27.8
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
.+++..+++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 347788888775 99999999999999999986
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.48 E-value=6.8e-05 Score=64.13 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.43 E-value=5.8e-05 Score=66.71 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=26.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998764
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=6.6e-05 Score=74.16 Aligned_cols=41 Identities=22% Similarity=0.504 Sum_probs=34.0
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcC-----------CCCCceEEEECCE
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL-----------LAPDKGEVYIRGR 153 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl-----------~~p~~G~I~i~G~ 153 (352)
.+..|..++|+|+||+|||||++.|+|. ..|..|.|.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999998 6788898887653
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0003 Score=61.46 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999997543
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00045 Score=65.14 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=25.7
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcC
Q 018638 251 EPEVLLYDEPTA-GLDPIASTVVEDLIRSVHKKG 283 (352)
Q Consensus 251 ~p~llLLDEPts-gLD~~~~~~l~~ll~~l~~~g 283 (352)
++++|++||+-. .-+...+..+...+..+.+.+
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~ 131 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE 131 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC
Confidence 489999999865 334477888889998887665
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.28 E-value=8e-05 Score=65.27 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=29.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCE
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGR 153 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~ 153 (352)
.+++|+|++|||||||++.|++.+++. -|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 589999999999999999999876543 477777654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00012 Score=62.91 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPD 144 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~ 144 (352)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 48999999999999999999975443
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00031 Score=64.62 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.0
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.++.-+.|.||+|+|||||++.++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999998854
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00016 Score=62.28 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999984
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00014 Score=63.84 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~ 153 (352)
..+++|+|++||||||+.+.|++.+ |.+.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 4689999999999999999999865 45556543
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00013 Score=66.86 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=33.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~ 154 (352)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 567788999999999999999999998764 3567778754
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=4.6e-05 Score=74.31 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=33.3
Q ss_pred eeeEeeeEEEeCCcE--EEEEcCCCchHHHHHHHHHcCC
Q 018638 105 HILRGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~--~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367888889999998 9999999999999999999864
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00022 Score=64.42 Aligned_cols=36 Identities=39% Similarity=0.553 Sum_probs=28.3
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHc---CCCCCceEEE
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAG---LLAPDKGEVY 149 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~G---l~~p~~G~I~ 149 (352)
-.+|.+++|+|++||||||+.++|++ +..++.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 35788999999999999999999996 3335555554
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00016 Score=65.81 Aligned_cols=44 Identities=36% Similarity=0.481 Sum_probs=29.1
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~ 153 (352)
.++++++.+++| +.|+||+|+|||||+++|++..... -+.+++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 355566666666 8899999999999999999876421 2445443
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00027 Score=59.59 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=9.9e-05 Score=67.77 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHH---cCCCCCceEE
Q 018638 117 GEAVGIIGPSGTGKSTILKIIA---GLLAPDKGEV 148 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~---Gl~~p~~G~I 148 (352)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4489999999999999999999 6555566655
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00035 Score=59.58 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998664
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00011 Score=64.55 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=24.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
+++|.|++||||||+++.|+..+.+....|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998776543344
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00021 Score=69.63 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=46.3
Q ss_pred CCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH------------hhcCEEEE
Q 018638 251 EPEVLLYDEPTAGLD---PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR------------RAVDRLIF 315 (352)
Q Consensus 251 ~p~llLLDEPtsgLD---~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~------------~~aDrv~v 315 (352)
.|.++++||-=.-++ +.....+.+++++.++.| ..++++||+++.+. ..|+..++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g----------~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~ 331 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYN----------GSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLL 331 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGT----------CEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEE
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhC----------eEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhhe
Confidence 589999999988884 677888888888888776 58999999997653 34566666
Q ss_pred EeCC
Q 018638 316 LYEG 319 (352)
Q Consensus 316 L~~G 319 (352)
+...
T Consensus 332 l~~~ 335 (392)
T 4ag6_A 332 LAQG 335 (392)
T ss_dssp CSCC
T ss_pred eCCC
Confidence 6654
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00046 Score=59.14 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
|.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.001 Score=64.91 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=23.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
-+++|+++.|.||.|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999999877664
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00048 Score=61.06 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHc
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.+-+++|+|++||||||+.++|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999998
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00049 Score=57.63 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 018638 119 AVGIIGPSGTGKSTILKII 137 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l 137 (352)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00047 Score=59.40 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998643
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00041 Score=60.21 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~ 153 (352)
..+++|+|++||||||+.+.|+.. |-..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 457999999999999999999985 66666543
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0011 Score=57.05 Aligned_cols=35 Identities=34% Similarity=0.682 Sum_probs=25.7
Q ss_pred EEEEEcCCCchHHHHHHHHH-cC----CCCCce----EEEECCE
Q 018638 119 AVGIIGPSGTGKSTILKIIA-GL----LAPDKG----EVYIRGR 153 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~-Gl----~~p~~G----~I~i~G~ 153 (352)
.++|+|++|+|||||++.+. +. ..|+.| .+.++|+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 48899999999999996554 44 456666 5556654
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00059 Score=59.09 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999844
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.015 Score=58.50 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=26.1
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
|+.+.--+++|+++.|.|++|+|||||+.-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 333332489999999999999999999776653
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=6.3e-05 Score=70.05 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=34.7
Q ss_pred CCeeeeEeeeEEEeCC-----------cEEEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 102 GEKHILRGVSFKIRHG-----------EAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 102 ~~~~~L~~vsl~i~~G-----------e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
|...+++.+...+..+ ..+.|+||+|+|||||+++|++.+.+..|.+
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 3344555555555543 5899999999999999999999887766543
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00096 Score=65.09 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHc-----------CCCCCceEEEECC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAG-----------LLAPDKGEVYIRG 152 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~G-----------l~~p~~G~I~i~G 152 (352)
|-.++|||.+|+|||||++.|+| -..|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 4567788887765
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00062 Score=62.59 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+++|+||+|||||||.+.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0004 Score=59.59 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
..+.++.|+|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999983
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00078 Score=57.85 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998643
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00083 Score=56.97 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=24.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~ 151 (352)
.++.|.|++||||||+.+.|+.. .-|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999871 12555555
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00089 Score=58.21 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0015 Score=74.91 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=27.0
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
+++|+++.|.||+|+|||||+..++.....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 899999999999999999999999875543
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00076 Score=59.66 Aligned_cols=22 Identities=55% Similarity=0.729 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.|+||||||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999987543
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00078 Score=57.58 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00099 Score=58.01 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
+|.+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999875543
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0015 Score=62.61 Aligned_cols=49 Identities=33% Similarity=0.343 Sum_probs=39.0
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc----CCCCCceEEEECC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG----LLAPDKGEVYIRG 152 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G----l~~p~~G~I~i~G 152 (352)
....+++..+.+ .|.-++|+|+||+|||||...+.+ |+..|...|...+
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 456789988888 789999999999999999999987 5555555555443
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.003 Score=57.43 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=38.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC----------HHHHHhhcCEEEEEe
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ----------HSTIRRAVDRLIFLY 317 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd----------l~~i~~~aDrv~vL~ 317 (352)
+++++++||--. |+.. +.+.++.+...+ .+||++-|+ ...+..+||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~g----------i~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENG----------FVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTT----------CEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCC----------CeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 445566666555 589999992 456677999999864
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.001 Score=58.23 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.+|-+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.001 Score=57.31 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999998543
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00089 Score=62.81 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=28.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
..+.++.|.||+||||||+.+.|+.-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 4567899999999999999999987543 35667765
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=56.65 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+.+++|+|+.||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.001 Score=56.98 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999986
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=57.88 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
..+|-+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999853
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0011 Score=56.66 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++.|.|++||||||+.+.|+--+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0011 Score=61.00 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 260 PtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||+++.....++++.+.++..+.. .+..+..|..+.+.+.++++.-.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~e~~~~~l~~~ 191 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKV---------TTNPIIPRYDEDIEREIKHISEL 191 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCC---------CCCCCCCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccc---------cCCCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999988765431 24466778888888887776443
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=57.45 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0011 Score=56.58 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=18.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998543
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.00081 Score=58.71 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
.+++|+|++|||||||+..|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999987654
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0052 Score=61.27 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=27.5
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3454443589999999999999999999877764
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0017 Score=56.02 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++.+.+++|+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999999998644
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0018 Score=55.37 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-.++|+|+.|+|||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0013 Score=59.36 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=37.4
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~ 190 (352)
+.+|+.+.|+||+||||||++.++..-.....| ....++++++.|......++.+++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------------------~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQND------------------RAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT------------------CGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC------------------CCCceEEEEeccchHHHHHHHHHHHH
Confidence 356899999999999999998876431110000 01135677777765444566666654
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=56.86 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+|-++.|+|+.||||||+.+.|+-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0021 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=56.56 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0022 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999999854
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=57.37 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++.+++|+|+.||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.002 Score=53.35 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0019 Score=54.52 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+++|+|+.||||||+.+.|+-.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0023 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999973
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0018 Score=53.74 Aligned_cols=24 Identities=33% Similarity=0.637 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.++|+|+.|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999987543
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0026 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-++++|+|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999863
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0026 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.20 E-value=0.002 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38899999999999999998753
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0023 Score=54.67 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
..+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0022 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998854
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0025 Score=55.57 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
..+++|.|+.||||||+.+.|+--+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998543
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0025 Score=52.99 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0028 Score=55.31 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+-+++|+|+.||||||+.+.|+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0022 Score=55.82 Aligned_cols=22 Identities=45% Similarity=0.709 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999764
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0023 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0036 Score=56.30 Aligned_cols=38 Identities=34% Similarity=0.359 Sum_probs=30.5
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
....++..-+.+ .|..+.|+||+|||||||...|+.-.
T Consensus 21 ~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 21 ERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred cceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 445677776665 47889999999999999999998643
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0021 Score=57.17 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.++.|+|++||||||+.+.|+--+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998543
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0025 Score=56.14 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0023 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=59.15 Aligned_cols=23 Identities=26% Similarity=0.665 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0042 Score=72.11 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=24.9
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|+++.|.||+|+|||||+..++.-.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999988776543
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0025 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998764
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0034 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999874
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0023 Score=53.55 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0025 Score=52.87 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0025 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998654
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0026 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999988744
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0024 Score=54.81 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0026 Score=52.52 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0024 Score=52.90 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0029 Score=57.60 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-+++|.|+.||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0027 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998643
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0025 Score=54.47 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999985
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0026 Score=53.27 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0029 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0035 Score=57.57 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0036 Score=55.07 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999987543
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0028 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999854
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0035 Score=55.44 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.-+++|+|+.||||||+.+.|+-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999874
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0031 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0032 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0032 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998643
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0032 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0034 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
.++|+|+.|+|||||++.+.|-...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3789999999999999999987643
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0037 Score=52.38 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999998743
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0033 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998743
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0068 Score=69.49 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
+++|+++.|.||+|+|||||...++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999877764
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.002 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHc
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0035 Score=52.09 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0037 Score=51.67 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999975
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0042 Score=55.55 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998543
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0034 Score=52.40 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0038 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 38999999999999999998643
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0038 Score=58.17 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHc
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0045 Score=56.27 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHc
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
++-+++|.||.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999999975
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0039 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998744
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0039 Score=52.05 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0023 Score=60.19 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0039 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++++|+.|+|||||++.+++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998643
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0045 Score=58.44 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0055 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.00089 Score=58.37 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=26.6
Q ss_pred eeEeeeEEEeCCc---EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 106 ILRGVSFKIRHGE---AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 106 ~L~~vsl~i~~Ge---~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+++.+.-.+..|. .+.|.||.|+|||||++.++..+.
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3333333334444 789999999999999999987553
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0044 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0033 Score=55.08 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0042 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.005 Score=58.08 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|+|+.|+|||||++.|.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0045 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0049 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999865
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0047 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0044 Score=60.43 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999985
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0048 Score=52.60 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999744
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0041 Score=57.37 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+|++|+|||||++.|.|--
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999988754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0049 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0046 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0053 Score=54.21 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0051 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0046 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0051 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.=.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0054 Score=56.41 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|..|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0056 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0052 Score=51.70 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999985
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0058 Score=54.20 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+|-++.|+|+.||||||+.+.|+--+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998644
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0049 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998743
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.01 Score=52.29 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=27.6
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
+..++..-+.+. |.-+.|.|+||+|||||...+..
T Consensus 4 ~~~lHas~v~v~-G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVID-KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEET-TEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 345666666654 88899999999999999887764
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0059 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0053 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-.++|+|+.|+|||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.006 Score=56.52 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 018638 118 EAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0059 Score=52.15 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999863
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0057 Score=52.96 Aligned_cols=22 Identities=50% Similarity=0.786 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0054 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999999754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0055 Score=51.62 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 488999999999999999983
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.54 E-value=0.006 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0055 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+|+.|+|||||++.+.+-.
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998743
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0062 Score=52.85 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0061 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998743
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0074 Score=55.87 Aligned_cols=31 Identities=39% Similarity=0.485 Sum_probs=23.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
-.++++|.+|+|||||++.|.|-.....|.+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 4789999999999999999999776555543
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0063 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
=.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999963
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0056 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37899999999999999998744
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0077 Score=54.05 Aligned_cols=29 Identities=38% Similarity=0.437 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
-+|-++.|.|+.||||||+++.|+-.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999876643
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0066 Score=56.55 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0054 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0047 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0061 Score=52.10 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0064 Score=52.12 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998753
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.008 Score=53.89 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+..+.|+|+.||||||+.+.|+--+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998643
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0071 Score=50.80 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
.+..+.|.||.|+|||||++.++..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999876543
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0065 Score=51.62 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0066 Score=51.95 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999863
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0077 Score=55.39 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0067 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0066 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0059 Score=51.83 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0017 Score=61.18 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=28.0
Q ss_pred eeeEeeeEEEeCC--cEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 105 HILRGVSFKIRHG--EAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 105 ~~L~~vsl~i~~G--e~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+++.+.-.+..| ..+.|.||+|+|||||++.+++.+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444444445 3489999999999999999998753
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0061 Score=55.46 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+|-++.|.|+.||||||+++.|+-.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987654
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0062 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0072 Score=55.95 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|..|||||||++.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0061 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999988754
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0076 Score=52.60 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+|+.|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999754
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0074 Score=58.31 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998664
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0069 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0074 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.008 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.++|+|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998544
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0072 Score=60.86 Aligned_cols=43 Identities=19% Similarity=0.461 Sum_probs=33.4
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
.+++.+ +.+-+|+.++|+|++|+|||||++.|+.-.....+.|
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 456655 7788999999999999999999999987554333333
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0079 Score=51.74 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0072 Score=53.19 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0074 Score=59.48 Aligned_cols=28 Identities=29% Similarity=0.235 Sum_probs=24.0
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.=.+..++.|+|++||||||+.+.|+.-
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999999763
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0092 Score=56.24 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=24.7
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
-+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988875
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0085 Score=54.80 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+|.++.|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0072 Score=52.64 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999743
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.008 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0083 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999888753
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0095 Score=53.60 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+|-+++|.|+.||||||+++.|+-.+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997663
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0076 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0055 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=9.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998864
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0099 Score=53.40 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+|.++.+-|++||||||+++.|+-.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0099 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
++.++.|+||.|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 466899999999999999999998663
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0094 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0089 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|..|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0085 Score=51.93 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+|+.|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 8899999999999999999743
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.01 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.009 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0084 Score=51.71 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.012 Score=53.18 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=27.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
.+|.++.+-|+.||||||+++.|+-.+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36899999999999999999999987765 4443
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.012 Score=56.39 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.+++|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.011 Score=56.70 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++.|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-.++|+|+.|+|||||++-++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999888653
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.013 Score=53.27 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+|-++.|.|+.||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999987654
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++++|+.|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.016 Score=51.43 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.3
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
+++|+++.|.|+.|+|||||+--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999976543
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.017 Score=62.03 Aligned_cols=123 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhh
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~ 193 (352)
++-..+.|+||+|+|||+|.+.|+..+.. ..--|.++.................-+|+
T Consensus 586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~--------------------- 644 (854)
T 1qvr_A 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYV--------------------- 644 (854)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCc---------------------
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHH
Q 018638 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273 (352)
Q Consensus 194 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~ 273 (352)
|..+.=.+..++-.. ...+|+|||. ..+++.....++
T Consensus 645 ------------------------------------G~~~~g~l~~~~~~~------~~~vl~lDEi-~~l~~~~~~~Ll 681 (854)
T 1qvr_A 645 ------------------------------------GYEEGGQLTEAVRRR------PYSVILFDEI-EKAHPDVFNILL 681 (854)
T ss_dssp ------------------------------------------CHHHHHHHC------SSEEEEESSG-GGSCHHHHHHHH
T ss_pred ------------------------------------CccccchHHHHHHhC------CCeEEEEecc-cccCHHHHHHHH
Q ss_pred HHHHHHHHcCCCCCCCCCCceEEEEEcC
Q 018638 274 DLIRSVHKKGENGLANPGNIASYVVVTH 301 (352)
Q Consensus 274 ~ll~~l~~~g~~~~~~~~~~~tvIivTH 301 (352)
+.|.+-.-.+..|....-+++.||++|+
T Consensus 682 ~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 682 QILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp HHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred HHhccCceECCCCCEeccCCeEEEEecC
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.012 Score=52.30 Aligned_cols=22 Identities=50% Similarity=0.786 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.013 Score=52.64 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
...-+.|.||.|+|||||++.++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34458899999999999999998743
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0078 Score=54.98 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.++-+++|.|+.||||||+.+.|+-.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999998763
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0026 Score=57.88 Aligned_cols=32 Identities=41% Similarity=0.678 Sum_probs=25.2
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+.++.+..+.| +.|.||+|+|||||++.|+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 34444555666 779999999999999999974
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=53.45 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.+++..++.|+||.||||+|..+.|+-
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999999984
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0052 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0053 Score=52.77 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=4.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998865
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.01 Score=58.92 Aligned_cols=22 Identities=50% Similarity=0.708 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999983
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.012 Score=51.16 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 38999999999999999998643
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=94.84 E-value=0.0031 Score=62.80 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=28.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
.+++|+|++|+||||++..|++.+.....+|.+-.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58999999999999999999998765444555533
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.0082 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 018638 118 EAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~G 139 (352)
=.++|+|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999964
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.025 Score=57.14 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=56.1
Q ss_pred CCCCChHHHHHHHH--HHHHhccC--------CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 018638 224 PSELSGGMKKRVAL--ARSIIFDN--------TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (352)
Q Consensus 224 ~~~LSGGqrQRvaI--ArAL~~~~--------~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~ 293 (352)
...+||||+|-.-+ +.|+++-+ .+++..=.+++|||. +-+|....+..++++++|-
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lg------------- 442 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLD------------- 442 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTT-------------
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcC-------------
Confidence 47899999995433 33443311 011123368999999 9999999999999998763
Q ss_pred eEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 294 ASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 294 ~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
.=+|++|=+ .+..++|.++.+-
T Consensus 443 lQliiatP~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 443 MQLLIAAPE--NISPERGTTYKLV 464 (483)
T ss_dssp CEEEEEESS--SCCCSSSEEEECC
T ss_pred CEEEEECcc--hhhhccCceEEEE
Confidence 347788877 6777789988875
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.013 Score=51.04 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 588999999999999988874
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.014 Score=48.39 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
.+.-+.|.||.|+|||++.+.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 4556889999999999999999876543
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.014 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.012 Score=58.75 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~ 149 (352)
++.+++++|++|+||||++..|+..+....-+|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVl 132 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVG 132 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5789999999999999999999987654333343
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.014 Score=50.65 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999853
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.019 Score=54.90 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
..++.|+||+|||||||...|+--+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998754
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.019 Score=49.23 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998754
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.023 Score=50.60 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
|.+++|=|+-||||||+++.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999997664
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.023 Score=50.71 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++.|+||.||||+|..+.|+--
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999853
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.016 Score=54.68 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
..+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999997653
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.025 Score=49.26 Aligned_cols=53 Identities=11% Similarity=0.207 Sum_probs=35.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH----------HHHhhcCEEEEEeC
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS----------TIRRAVDRLIFLYE 318 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~----------~i~~~aDrv~vL~~ 318 (352)
+++++++||.-- +++. +.+.|+.+..++ ..||++.++.+ .+..+||.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~----------~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDRG----------IDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHTT----------CEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHCC----------CCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 378999999753 5543 455666666655 47888777443 24456899987753
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.025 Score=52.21 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++..+.|.||.|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35568999999999999999888765
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.03 Score=52.25 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCce
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G 146 (352)
+-.++|+|.+|+|||||+|.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 346899999999999999999997644433
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.026 Score=55.74 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+++|+||+|||||||.+.|+--+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.024 Score=53.67 Aligned_cols=37 Identities=41% Similarity=0.437 Sum_probs=28.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~ 151 (352)
.+|..+.|.||.|+|||||++.++..+......+.+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 3467899999999999999999998765433334433
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.019 Score=55.11 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
..-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999987653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.0096 Score=51.51 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988864
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=93.90 E-value=0.018 Score=50.53 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHH-HHcC
Q 018638 120 VGIIGPSGTGKSTILKI-IAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~-l~Gl 140 (352)
++|+|+.|+|||||++. +.|-
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 5554
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.016 Score=57.82 Aligned_cols=40 Identities=30% Similarity=0.483 Sum_probs=29.4
Q ss_pred eeeEEEeCCcE--EEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 109 GVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 109 ~vsl~i~~Ge~--~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
.+.-.+..|.+ +.|.||+|+|||||.++|+......-..+
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 34444445554 88999999999999999999876543333
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.027 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|..++|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999864
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.025 Score=55.83 Aligned_cols=22 Identities=50% Similarity=0.708 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.031 Score=50.94 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.+...+.|.||.|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34456889999999999999999875
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.032 Score=51.13 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+..+.|.||.|+|||||++.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999866
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.041 Score=51.63 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998775
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.047 Score=49.49 Aligned_cols=28 Identities=36% Similarity=0.370 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
.+.-+.|.||.|+|||+|.+.|+.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 3567889999999999999999987643
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.034 Score=52.62 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+..-+.|.||.|+|||||.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44568899999999999999999865
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.042 Score=52.79 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.3
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
--+++|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3688899999999999999999999985
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.023 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|..|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.038 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+..+.|.||.|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998754
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.035 Score=53.04 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+..+.|.||+|+||||+.+.|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999876
|
| >1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=93.51 E-value=0.066 Score=51.03 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=29.3
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 102 ~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.....+++.-+.+. |.-+.|.|+||+|||||.-.+..
T Consensus 133 a~~~~~H~~~v~~~-g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 133 ATVAQIHGVLLEVF-GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp CCCEEEEEEEEEET-TEEEEEEESSSSSHHHHHHHHHT
T ss_pred hhcceeEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 44567888766664 88899999999999999877653
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.043 Score=51.75 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.-+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.0062 Score=52.63 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38899999999999999988744
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.034 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++..++++|.+|+|||||+|.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667999999999999999999986
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.043 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-.+||+|+.||||||+.+.|+--
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999653
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.045 Score=50.82 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.|..+.|.||.|+|||||++.++.-.
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 36899999999999999999998643
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=93.31 E-value=0.043 Score=52.78 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=25.1
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.+.++++---.++|+|..+||||||++.|++-
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 44455554445899999999999999999874
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.036 Score=56.67 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|..|+|||||++.|.|-.
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999864
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.044 Score=57.07 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+|.++.|+|.+||||||+.+.|+-.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998654
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.26 E-value=0.043 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
..+.|.||.|+|||+|.+.|+.-+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457788999999999999999765
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=93.22 E-value=0.049 Score=51.25 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+..-+.|.||.|+|||||++.++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34458899999999999999998753
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.048 Score=52.27 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
....-+.|.||.|+|||||++.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 352 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-71 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 9e-71 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-63 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-62 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-62 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-62 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-59 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-58 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-57 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 9e-53 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-52 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-52 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-52 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-51 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-51 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-49 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-48 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-46 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-45 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-42 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-16 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-06 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 1e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.001 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 219 bits (560), Expect = 4e-71
Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 22/253 (8%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
V + N+ K FG + ++ I+ GE + ++GPSG GK+T L++IAGL P +G +Y
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
R L + I +VFQS A++ +TV EN+ F L + K ++I + V+
Sbjct: 65 FGDRDVTYLPPKDR----NISMVFQSYAVWPHMTVYENIAFPL-KIKKFPKDEIDKRVRW 119
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
+ ++ + +R P++LSGG ++RVA+AR+I+ + P+VLL DEP + LD
Sbjct: 120 AAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE-------PDVLLMDEPLSNLDAKLR 172
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ I+ + +K + + + VTH DR+ + G+++ G E
Sbjct: 173 VAMRAEIKKLQQKLK---------VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE 223
Query: 330 -FTSSSNPIVQQF 341
+ ++ V F
Sbjct: 224 VYLRPNSVFVATF 236
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 219 bits (559), Expect = 9e-71
Identities = 82/269 (30%), Positives = 138/269 (51%), Gaps = 30/269 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +++K +G +L+GVS + R G+ + IIG SG+GKST L+ I L P +G + +
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 62
Query: 152 GRKRAGLISDEEISGL-----------RIGLVFQSAALFDSLTVRENVGFLLYENSKMRD 200
G+ + + + R+ +VFQ L+ +TV ENV + +
Sbjct: 63 GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 122
Query: 201 EQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259
E + LA VG+ + + P LSGG ++RV++AR++ +EP+VLL+DE
Sbjct: 123 HDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA-------MEPDVLLFDE 175
Query: 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319
PT+ LDP V +++ + ++G + VVVTH+ R +IFL++G
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEG----------KTMVVVTHEMGFARHVSSHVIFLHQG 225
Query: 320 KIVWQGMTHE-FTSSSNPIVQQFASGSLE 347
KI +G + F + +P +QQF GSL+
Sbjct: 226 KIEEEGDPEQVFGNPQSPRLQQFLKGSLK 254
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 198 bits (506), Expect = 4e-63
Identities = 80/244 (32%), Positives = 125/244 (51%), Gaps = 26/244 (10%)
Query: 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I +NV K++ + L+ V+ I+ GE V I+GPSG+GKST+L II L P +G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 147 EVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENV--GFLLYENSKMRDEQ 202
EVYI K L DE +I +IG VFQ L LT ENV + M E+
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 203 ISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261
+ E L L + + P++LSGG ++RVA+AR++ P ++L D+PT
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA-------NNPPIILADQPT 173
Query: 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321
LD + L++ +++ E+G + VVVTH + R +R+I+L +G++
Sbjct: 174 GALDSKTGEKIMQLLKKLNE--EDGK-------TVVVVTHDINVARFG-ERIIYLKDGEV 223
Query: 322 VWQG 325
+
Sbjct: 224 EREE 227
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 197 bits (503), Expect = 1e-62
Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 25/258 (9%)
Query: 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146
+I N+ K F + L VS + G+ G+IG SG GKST+++ + L P +G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 147 EVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQIS 204
V + G++ L S+ E++ R IG++FQ L S TV NV L E +++
Sbjct: 61 SVLVDGQELTTL-SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVK 118
Query: 205 ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264
V E L+ VGL D PS LSGG K+RVA+AR++ + P+VLL DE T+ L
Sbjct: 119 RRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN-------PKVLLCDEATSAL 171
Query: 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324
DP + + +L++ ++++ + +++TH+ ++R D + + G+++ Q
Sbjct: 172 DPATTRSILELLKDINRRLG---------LTILLITHEMDVVKRICDCVAVISNGELIEQ 222
Query: 325 GMTHE-FTSSSNPIVQQF 341
E F+ P+ Q+F
Sbjct: 223 DTVSEVFSHPKTPLAQKF 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 197 bits (502), Expect = 2e-62
Identities = 75/254 (29%), Positives = 127/254 (50%), Gaps = 20/254 (7%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+ +V+K FGE +R +S +++ GE + ++GPSG GK+T L++IAGL P +G++YI
Sbjct: 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62
Query: 151 RGRKRAGLISDEEI--SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
+ A + I +VFQS AL+ +TV +N+ F + K+ ++I + V+
Sbjct: 63 GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF-PLKLRKVPRQEIDQRVR 121
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
E +GL + +R P ELSGG ++RVAL R+I+ P+V L DEP + LD
Sbjct: 122 EVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK-------PQVFLMDEPLSNLDAKL 174
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
+ ++ + ++ + + VTH DR+ + G + G
Sbjct: 175 RVRMRAELKKLQRQLG---------VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD 225
Query: 329 E-FTSSSNPIVQQF 341
E + +N V F
Sbjct: 226 EVYDKPANTFVAGF 239
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 197 bits (501), Expect = 4e-62
Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 32/264 (12%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
++ N+ K FGE L GVS + G+ IIGP+G+GKST++ +I G L D+G VY
Sbjct: 4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 63
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF------------LLYENSKM 198
+ E+ I FQ+ +TV EN+ L Y+
Sbjct: 64 ENKDITNKE-PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258
++E++ E + L + L + DR ELSGG K V + R+++ + P++++ D
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN-------PKMIVMD 175
Query: 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318
EP AG+ P + + + + + KG +++++ H+ + +D L ++
Sbjct: 176 EPIAGVAPGLAHDIFNHVLELKAKG----------ITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 319 GKIVWQGMTHEFTSS--SNPIVQQ 340
G+I+ +G E + S+P V +
Sbjct: 226 GQIIAEGRGEEEIKNVLSDPKVVE 249
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 189 bits (481), Expect = 2e-59
Identities = 74/251 (29%), Positives = 125/251 (49%), Gaps = 22/251 (8%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +NV K++GE + + ++ I GE V +GPSG GKST+L++IAGL G+++I
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
++ E +G+VFQS AL+ L+V EN+ F L + + + E I++ V +
Sbjct: 61 EKRMNDTPPAER----GVGMVFQSYALYPHLSVAENMSFGL-KLAGAKKEVINQRVNQVA 115
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+ L + DR P LSGG ++RVA+ R+++ + P V L DEP + LD
Sbjct: 116 EVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE-------PSVFLLDEPLSNLDAALRVQ 168
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-F 330
+ I +HK+ + + VTH D+++ L G++ G E +
Sbjct: 169 MRIEISRLHKRLGR---------TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 219
Query: 331 TSSSNPIVQQF 341
++ V F
Sbjct: 220 HYPADRFVAGF 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 187 bits (476), Expect = 1e-58
Identities = 65/252 (25%), Positives = 123/252 (48%), Gaps = 21/252 (8%)
Query: 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
D++++ ++++ +G H ++G+ K+ G+ V +IG +G GK+T L IAGL+ KG++
Sbjct: 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 149 YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 208
G+ I+ + I LV + +F LTV EN+ Y N K ++ +L
Sbjct: 64 IFNGQDITNK-PAHVINRMGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEW 121
Query: 209 ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268
LK +L LSGG ++ +A+ R+++ P++L+ DEP+ GL PI
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR-------PKLLMMDEPSLGLAPIL 174
Query: 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328
+ V ++I+ ++++G + ++V + L G+IV +G
Sbjct: 175 VSEVFEVIQKINQEG----------TTILLVEQNALGALKVAHYGYVLETGQIVLEGKAS 224
Query: 329 EFTSSSNPIVQQ 340
E N +V++
Sbjct: 225 ELL--DNEMVRK 234
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 184 bits (468), Expect = 2e-57
Identities = 62/256 (24%), Positives = 120/256 (46%), Gaps = 28/256 (10%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
+ +++ K G+K IL+G+SF+I GE G+IGP+G GK+T L+II+ L+ P G V +
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G+ + I + + A + ++ E + F+ +I E+V+
Sbjct: 63 GKNVVEEPHEVRK---LISYLPEEAGAYRNMQGIEYLRFVA-GFYASSSSEIEEMVERAT 118
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
GL S S GM +++ +AR+++ V P + + DEPT+GLD + +
Sbjct: 119 EIAGLGEKIKDRVSTYSKGMVRKLLIARALM-------VNPRLAILDEPTSGLDVLNARE 171
Query: 272 VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331
V +++ ++ + +V +H + DR+ ++ G IV G E
Sbjct: 172 VRKILKQASQE----------GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE-- 219
Query: 332 SSSNPIVQQFASGSLE 347
+ +++ + ++E
Sbjct: 220 -----LKERYKAQNIE 230
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 172 bits (437), Expect = 9e-53
Identities = 87/256 (33%), Positives = 128/256 (50%), Gaps = 21/256 (8%)
Query: 90 VLIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147
V I +NV K F G+ L V+ I +GE GI+GPSG GK+T ++IIAGL P GE
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 148 VYIRGRKRAGLISDEEISGLR-IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+Y R A R IG+VFQ+ AL+ +LT EN+ F L N KM E+I +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL-TNMKMSKEEIRKR 120
Query: 207 VKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266
V+E + + V + P ELSG ++RVALAR+++ D +LL DEP + LD
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP-------SLLLLDEPFSNLDA 173
Query: 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326
L++ V + + +VV+H + I DR+ L +GK+V G
Sbjct: 174 RMRDSARALVKEVQSRLGV---------TLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
Query: 327 THE-FTSSSNPIVQQF 341
+ + + + V
Sbjct: 225 PEDLYDNPVSIQVASL 240
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 171 bits (434), Expect = 2e-52
Identities = 65/252 (25%), Positives = 124/252 (49%), Gaps = 26/252 (10%)
Query: 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150
+I+ ++ + + L +S K+ GE I+GP+G GK+ L++IAG PD G + +
Sbjct: 1 MIEIESLSRKWK-NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKEN 210
G+ L ++ I V+Q+ +LF + V++N+ F + +++ + ++
Sbjct: 60 DGKDVTDLSPEKH----DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARD- 114
Query: 211 LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270
+ ++ + DR P LSGG ++RVALAR+++ + ++LL DEP + LDP
Sbjct: 115 ---LKIEHLLDRNPLTLSGGEQQRVALARALVTNP-------KILLLDEPLSALDPRTQE 164
Query: 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE- 329
+++ +HKK + + + +TH + R DR+ + +GK++ G E
Sbjct: 165 NAREMLSVLHKKNK---------LTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
Query: 330 FTSSSNPIVQQF 341
F V F
Sbjct: 216 FEKPVEGRVASF 227
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 172 bits (436), Expect = 4e-52
Identities = 55/283 (19%), Positives = 109/283 (38%), Gaps = 42/283 (14%)
Query: 66 ATKFNDSSKSENVNTLFEPEDDGDVLIDCRNV---YKSFGEKHILRGVSFKIRHGEAVGI 122
T F + E + + + D D NV + +L+ ++ I GE + I
Sbjct: 8 VTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAI 67
Query: 123 IGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182
G +G+GK+++L +I G L +G + G R+ Q + +
Sbjct: 68 TGSTGSGKTSLLMLILGELEASEGIIKHSG---------------RVSFCSQFSWIMPG- 111
Query: 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE----LSGGMKKRVALA 238
T++EN+ F + + R + + + + ++ + E LSGG + R++LA
Sbjct: 112 TIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 170
Query: 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298
R++ D ++ L D P LD V + + ++
Sbjct: 171 RAVYKD-------ADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN----------KTRIL 213
Query: 299 VTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQF 341
VT + +R+A D+++ L++G + G E S +
Sbjct: 214 VTSKMEHLRKA-DKILILHQGSSYFYGTFSELQSLRPDFSSKL 255
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 170 bits (431), Expect = 6e-52
Identities = 56/251 (22%), Positives = 107/251 (42%), Gaps = 25/251 (9%)
Query: 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
+++ ++V E L +S ++R GE + ++GP+G GKST+L +AG+ KG +
Sbjct: 2 IVMQLQDV----AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQ 56
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
G+ L + Q + V + D+ +EL+ +
Sbjct: 57 FAGQPLEAW--SATKLALHRAYLSQQQTPPFATPVWHYLTL------HQHDKTRTELLND 108
Query: 210 NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS 269
A+ L R ++LSGG +RV LA ++ + + ++LL DEP LD
Sbjct: 109 VAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 168
Query: 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329
+ ++ ++ ++ ++G + V+ +H + R R L GK++ G E
Sbjct: 169 SALDKILSALCQQG----------LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 218
Query: 330 FTSSSNPIVQQ 340
+ P + Q
Sbjct: 219 VL--TPPNLAQ 227
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 169 bits (431), Expect = 1e-51
Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
ID +V + E IL+ ++ I GE V +G SG GKST++ +I G++
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
I G I D LR IGLV Q LF S TV+EN+ + + +++
Sbjct: 77 IDGHN----IKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPTATDEEVVEAAKMA 131
Query: 208 K-----ENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
NL G +LSGG K+R+++AR + + P +L+ DE T+
Sbjct: 132 NAHDFIMNLPQ-GYDTEVGERGVKLSGGQKQRLSIARIFLNN-------PPILILDEATS 183
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
LD + +++++ + + K + ++V H+ STI A D+++ + G IV
Sbjct: 184 ALDLESESIIQEALDVLSKD-----------RTTLIVAHRLSTITHA-DKIVVIENGHIV 231
Query: 323 WQGMTHE 329
G TH
Sbjct: 232 ETG-THR 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 168 bits (427), Expect = 3e-51
Identities = 67/261 (25%), Positives = 124/261 (47%), Gaps = 33/261 (12%)
Query: 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
++ R+V ++ + + ILR +SF+ + + GPSG GKSTI ++ P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLL-----YENSKMRDEQ 202
I G+ I + + R IG V Q +A+ T+REN+ + L E+ +
Sbjct: 61 IDGQP----IDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDL 115
Query: 203 ISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262
L ++SGG ++R+A+AR+ + + P++L+ DE TA
Sbjct: 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN-------PKILMLDEATA 168
Query: 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322
LD + ++V+ + S+ K + +V+ H+ STI A D++ F+ +G+I
Sbjct: 169 SLDSESESMVQKALDSLMKG-----------RTTLVIAHRLSTIVDA-DKIYFIEKGQIT 216
Query: 323 WQGMTHEFTSSSNPIVQQFAS 343
G H +++P+ ++ S
Sbjct: 217 GSG-KHNELVATHPLYAKYVS 236
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 164 bits (417), Expect = 2e-49
Identities = 63/246 (25%), Positives = 118/246 (47%), Gaps = 32/246 (13%)
Query: 92 IDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
++ RNV ++ E LR ++ KI G+ V ++G SG+GKSTI +I D+G +
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 150 IRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELV 207
+ G + + ++ LR + LV Q+ LF+ E S+ + E+ + +
Sbjct: 74 MDGHD----LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMA 129
Query: 208 K--ENLAAV--GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263
+ + + GL + LSGG ++R+A+AR+++ D +L+ DE T+
Sbjct: 130 YAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD-------SPILILDEATSA 182
Query: 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323
LD + ++ + + K + +V+ H+ STI +A D ++ + +G IV
Sbjct: 183 LDTESERAIQAALDELQKN-----------RTSLVIAHRLSTIEQA-DEIVVVEDGIIVE 230
Query: 324 QGMTHE 329
+G TH
Sbjct: 231 RG-THS 235
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 161 bits (410), Expect = 2e-48
Identities = 64/249 (25%), Positives = 117/249 (46%), Gaps = 35/249 (14%)
Query: 92 IDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148
+ ++V ++ + +L+G++F +R GE ++GP+G+GKST+ ++ L P G++
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 149 YIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL 206
+ G+ + E L + V Q +F +++EN+ + L +E +
Sbjct: 72 LLDGKP----LPQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGL-TQKPTMEEITAAA 125
Query: 207 VKENLAAV------GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260
VK + G D S+LSGG ++ VALAR++I P VL+ D+
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRK-------PCVLILDDA 178
Query: 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320
T+ LD + VE L+ ++ S +++T S + +A D ++FL G
Sbjct: 179 TSALDANSQLQVEQLLYESPERYS---------RSVLLITQHLSLVEQA-DHILFLEGGA 228
Query: 321 IVWQGMTHE 329
I G TH+
Sbjct: 229 IREGG-THQ 236
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 154 bits (391), Expect = 8e-46
Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 29/244 (11%)
Query: 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149
I RN+ + IL ++ I+ GE +GI+G SG+GKST+ K+I P+ G+V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 150 IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE 209
I G A D ++G+V Q L + ++ +N+ S + ++L
Sbjct: 62 IDGHDLALA--DPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 210 ----NLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265
+ G + + LSGG ++R+A+AR+++ + ++L++DE T+ LD
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP-------KILIFDEATSALD 171
Query: 266 PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325
+ V+ + + K + +++ H+ ST++ A DR+I + +GKIV QG
Sbjct: 172 YESEHVIMRNMHKICKG-----------RTVIIIAHRLSTVKNA-DRIIVMEKGKIVEQG 219
Query: 326 MTHE 329
H+
Sbjct: 220 -KHK 222
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 152 bits (386), Expect = 4e-45
Identities = 70/250 (28%), Positives = 115/250 (46%), Gaps = 26/250 (10%)
Query: 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155
K G + V F++ + ++GP+G GKS L++IAG++ PD+GEV + G
Sbjct: 6 RAEKRLGNFRL--NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG 215
L + IG V Q ALF L+V N+ + + + V+E +G
Sbjct: 63 TPLPPERR----GIGFVPQDYALFPHLSVYRNIAY---GLRNVERVERDRRVREMAEKLG 115
Query: 216 LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL 275
+ + DR P+ LSGG ++RVALAR+++ +LL DEP + +D V+ +
Sbjct: 116 IAHLLDRKPARLSGGERQRVALARALVIQP-------RLLLLDEPLSAVDLKTKGVLMEE 168
Query: 276 IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSN 335
+R V ++ + + VTH D + + G+IV +G E S+ N
Sbjct: 169 LRFVQREFDV---------PILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKN 219
Query: 336 PIVQQFASGS 345
V +F S
Sbjct: 220 GEVAEFLSAR 229
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 144 bits (364), Expect = 2e-42
Identities = 45/219 (20%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151
++ R++ + K +L ++ I G V GP+G GK+T+LK I+ L P KGE+
Sbjct: 3 LEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 61
Query: 152 GRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENL 211
G + +I + + + ++V + + + ++ + + L
Sbjct: 62 GVPITKVKG-------KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK---NEIMDAL 111
Query: 212 AAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271
+V + ++ + ELS G +RV LA +++ + E+ + D+P +D +
Sbjct: 112 ESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNA-------EIYVLDDPVVAIDEDSKHK 163
Query: 272 VEDLIRSVHKKGENGLA-----NPGNIASYVVVTHQHST 305
V I + K E G+ + H++ST
Sbjct: 164 VLKSILEILK--EKGIVIISSREELSYCDVNENLHKYST 200
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 74.6 bits (182), Expect = 1e-16
Identities = 20/206 (9%), Positives = 38/206 (18%), Gaps = 47/206 (22%)
Query: 120 VGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179
+ I G G GK+T++K I L + + R G +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK-------KRTGFRIITTEGK 55
Query: 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239
+ + S + Q E A
Sbjct: 56 KKIFSSKFFTSKKLVGSYGVNVQ---------------------YFEELAIPILERAYRE 94
Query: 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299
+ +V++ DE + V
Sbjct: 95 AKKDR-------RKVIIIDEIGKMELFSKKFRDLVRQIMHDPNV-----------NVVAT 136
Query: 300 THQHSTIRRAVDRLIFLYEGKIVWQG 325
+ L ++
Sbjct: 137 IPIRDVHPLV-KEIRRLPGAVLIELT 161
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGL 287
SGG K ALA ++ + S + DE A LD + IR
Sbjct: 334 SGGEKTVAALALLFAINSYQPS---PFFVLDEVDAALDITNVQRIAAYIRRHRNPD---- 386
Query: 288 ANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317
++V++ +++ ++ D L+ +Y
Sbjct: 387 ------LQFIVISLKNTMFEKS-DALVGVY 409
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.001
Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 6/161 (3%)
Query: 120 VGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179
V + GP G GK+T++ + +L V G + G + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPV--DGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 180 DSLTVRENVGFLLYE--NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237
+ + G + +L L + + K +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278
I S ++L P P+A +VE++
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLA--LVEEIRNR 160
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.89 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.74 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.39 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.37 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.03 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.96 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.28 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.07 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.96 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.87 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.83 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.56 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.55 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.5 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.46 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.46 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.41 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.36 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.29 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.28 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.27 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.25 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.2 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.19 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.18 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.17 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.15 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.14 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.11 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.11 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.1 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.04 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.03 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.88 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.84 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.84 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.81 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.79 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.75 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.72 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.72 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.71 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.7 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.7 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.67 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.65 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.65 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.61 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.6 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.59 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.58 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.56 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.56 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.55 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.54 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.53 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.52 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.51 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.5 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.46 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.45 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.41 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.37 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.37 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.33 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.32 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.31 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.3 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.27 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.22 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.22 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.21 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.2 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.18 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.17 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.09 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.07 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.04 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.04 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.03 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.02 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.01 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.01 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.0 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.94 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.94 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.92 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.92 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.81 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.8 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.78 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.78 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.77 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.75 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.75 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.74 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.74 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.69 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.68 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.66 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.65 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.64 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.61 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.57 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.56 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.55 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.55 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.54 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.54 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.53 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.51 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.45 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.45 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.4 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.38 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.36 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.27 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.27 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.26 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.24 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.23 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.22 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.21 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.18 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.17 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.16 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.14 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.12 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.11 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.06 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.05 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.05 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.04 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.04 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.04 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.02 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.02 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.96 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.96 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.93 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.91 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.86 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 94.82 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.8 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.77 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.72 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.71 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.69 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.69 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.67 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.66 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.65 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.61 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.6 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.57 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.55 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.52 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.5 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.5 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.46 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.43 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.41 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.39 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.35 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.34 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.32 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.27 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 94.27 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.26 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.24 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.19 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.19 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.18 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.18 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.01 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.98 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.95 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.94 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.94 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.85 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.74 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.69 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.67 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.6 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 93.6 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.56 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.56 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.54 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.47 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.23 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.04 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.84 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.49 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.49 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.47 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.25 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.1 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.98 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.82 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.58 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.56 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.51 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.34 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.25 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.03 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.03 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.53 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 90.42 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 89.35 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.19 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.86 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.73 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 88.51 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.32 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.74 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.64 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.45 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 87.06 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.61 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.45 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.12 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.05 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 84.48 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.29 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 83.91 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 83.88 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 83.54 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 83.23 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 83.23 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 83.07 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 82.8 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 82.33 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 82.29 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 81.84 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 81.67 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 80.85 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.34 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 80.32 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.7e-68 Score=493.10 Aligned_cols=234 Identities=33% Similarity=0.537 Sum_probs=214.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--hhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~~~~~~ 168 (352)
.|+++||+|+||++.||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++....... ...+++
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ 82 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccccc
Confidence 489999999999999999999999999999999999999999999999999999999999999875432111 112446
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||||||++.+||.+||+||+.+++..+ +.+.++.++++.++++.++|+++.+++|++|||||||||+|||||+.
T Consensus 83 ig~v~Q~~~L~~~ltV~eni~~~~~~~-~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~----- 156 (240)
T d1g2912 83 IAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR----- 156 (240)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT-----
T ss_pred ceecccchhhcchhhhhHhhhhhHHHc-CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999998654 46788889999999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..++++|++++++ | +|||+||||++++.++||||++|++|+|++.|++
T Consensus 157 --~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~ 224 (240)
T d1g2912 157 --KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG----------VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSP 224 (240)
T ss_dssp --CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred --CCCEEEecCCCcccCHHHHHHHHHHHHHHHhccC----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 69999999999999999999999999999776 6 6999999999999999999999999999999999
Q ss_pred cccc-cCCcHHHHHHh
Q 018638 328 HEFT-SSSNPIVQQFA 342 (352)
Q Consensus 328 ~~~~-~~~~~~~~~~~ 342 (352)
+|++ ++.++++++|+
T Consensus 225 ~el~~~P~~~~~~~fi 240 (240)
T d1g2912 225 DEVYDKPANTFVAGFI 240 (240)
T ss_dssp HHHHHSCSBHHHHHHS
T ss_pred HHHHhCCCCHHHHHhC
Confidence 9975 57889999874
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.3e-68 Score=492.97 Aligned_cols=229 Identities=32% Similarity=0.535 Sum_probs=206.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+|+||++.||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+|+|+++.... .. +++|||
T Consensus 7 I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~---~r~ig~ 82 (239)
T d1v43a3 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PK---DRNISM 82 (239)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GG---GGTEEE
T ss_pred EEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCC-cc---cceEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999986542 22 236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
|||++.+|+.+||+||+.|+... .+.++++.++++.++++.+||+++.+++|++|||||||||+|||||+. +
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~-------~ 154 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKI-KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV-------E 154 (239)
T ss_dssp EEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT-------C
T ss_pred EeechhhcccchHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhcc-------C
Confidence 99999999999999999998743 346788889999999999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+||||||||+||||.++.+++++|++++++ | +|||+||||++++.++||||++|++|+|+++|+++++
T Consensus 155 P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g----------~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el 224 (239)
T d1v43a3 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK----------VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224 (239)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCceeecCCcccCCHHHHHHHHHHHHHHHHhcC----------CeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999765 6 6999999999999999999999999999999999997
Q ss_pred c-cCCcHHHHHHh
Q 018638 331 T-SSSNPIVQQFA 342 (352)
Q Consensus 331 ~-~~~~~~~~~~~ 342 (352)
+ ++.++++++|+
T Consensus 225 ~~~P~~~~~~~~l 237 (239)
T d1v43a3 225 YLRPNSVFVATFI 237 (239)
T ss_dssp HHCCSBHHHHHHS
T ss_pred HhCCCCHHHHHhh
Confidence 6 56789999987
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.1e-67 Score=490.11 Aligned_cols=234 Identities=36% Similarity=0.551 Sum_probs=212.7
Q ss_pred eEEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccc
Q 018638 91 LIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y--~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~ 167 (352)
.|+++||+|+| |...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+|+|+++....... ...++
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 38999999999 5678999999999999999999999999999999999999999999999999975421111 11234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+||||||++.|||.+||+|||+|++.. .+.++++.++++.++++.+||+++.+++|++|||||||||+|||||++
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~---- 157 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTN-MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK---- 157 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT-SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT----
T ss_pred cceEEeccccccccccHHHHhhhhhHh-hcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhh----
Confidence 699999999999999999999999853 457788889999999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++.+++++|++++++ | +|||+||||++++.++||||++|++|+|++.|+
T Consensus 158 ---~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g----------~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~ 224 (242)
T d1oxxk2 158 ---DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG----------VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224 (242)
T ss_dssp ---CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred ---cccceeecCCccCCCHHHHHHHHHHHHHHHhccC----------CEEEEEECCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 69999999999999999999999999999765 6 699999999999999999999999999999999
Q ss_pred ccccc-cCCcHHHHHHh
Q 018638 327 THEFT-SSSNPIVQQFA 342 (352)
Q Consensus 327 ~~~~~-~~~~~~~~~~~ 342 (352)
+++++ .+.++++.+|+
T Consensus 225 ~~el~~~P~~~~~~~fl 241 (242)
T d1oxxk2 225 PEDLYDNPVSIQVASLI 241 (242)
T ss_dssp HHHHHHSCSSHHHHHHH
T ss_pred HHHHHhCCCCHHHHhcc
Confidence 99976 56789998886
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.8e-68 Score=488.63 Aligned_cols=229 Identities=33% Similarity=0.540 Sum_probs=173.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+|+||++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... . .+++|||
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~---~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-P---AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSC-G---GGTCEEE
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCc-h---hhceeee
Confidence 68999999999999999999999999999999999999999999999999999999999999986532 2 2346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
|||++.+|+.+||+||+.|+... .+.++++.++++.++++.++|.++.+++|++|||||||||+|||||++ +
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~-------~ 148 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKL-AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA-------E 148 (232)
T ss_dssp ECSSCCC----------------------CHHHHHHHHHHHHC---------------------CHHHHHHT-------C
T ss_pred eccccccccchhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 99999999999999999998743 345667778899999999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|++|||||||+||||.++.+++++|+++.++ | +|||+||||++++..+||||++|++|+|++.|+++++
T Consensus 149 P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g----------~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el 218 (232)
T d2awna2 149 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG----------RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218 (232)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 9999999999999999999999999999765 5 6999999999999999999999999999999999997
Q ss_pred c-cCCcHHHHHHh
Q 018638 331 T-SSSNPIVQQFA 342 (352)
Q Consensus 331 ~-~~~~~~~~~~~ 342 (352)
+ .+.++++++|+
T Consensus 219 ~~~P~~~~v~~fl 231 (232)
T d2awna2 219 YHYPADRFVAGFI 231 (232)
T ss_dssp HHSCSBHHHHHHS
T ss_pred HhCCCCHHHHHhc
Confidence 6 46788888886
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9e-68 Score=490.47 Aligned_cols=233 Identities=33% Similarity=0.560 Sum_probs=210.3
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhh-c
Q 018638 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI-S 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~-~ 165 (352)
||+++||+|+|+.. .||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.|+|+++......... .
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 68999999999642 689999999999999999999999999999999999999999999999998765322211 1
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+++||||||++.+|+.+||+|||.+++..+ +.++++.++++.++|+.+||+++.+++|++|||||||||+|||||+.
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~-~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~-- 157 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS-- 157 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTT-TCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHT--
T ss_pred hccccccccccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhcc--
Confidence 236999999999999999999999988543 46677788899999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++.+++++|++++++ | +|||+||||++++..+||||++|++|+|++.
T Consensus 158 -----~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~ 222 (240)
T d3dhwc1 158 -----NPKVLLCDEATSALDPATTRSILELLKDINRRLG----------LTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (240)
T ss_dssp -----CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHC----------CEEEEEBSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred -----CCCeEEeccccccCCHHHhhHHHHHHHHHHhccC----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 69999999999999999999999999999776 6 6999999999999999999999999999999
Q ss_pred ecccccc-cCCcHHHHHH
Q 018638 325 GMTHEFT-SSSNPIVQQF 341 (352)
Q Consensus 325 g~~~~~~-~~~~~~~~~~ 341 (352)
|++++++ .+.++++++|
T Consensus 223 G~~~ei~~~P~~~~t~~F 240 (240)
T d3dhwc1 223 DTVSEVFSHPKTPLAQKF 240 (240)
T ss_dssp EETTTTTCSSCCTTTTCC
T ss_pred CCHHHHHhCCCChHHcCC
Confidence 9999986 4677877654
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.5e-66 Score=477.46 Aligned_cols=226 Identities=30% Similarity=0.538 Sum_probs=205.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+|+|++ .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+|+|+++.... .. +++||
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~-~~---~r~ig 75 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PE---KHDIA 75 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-HH---HHTCE
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccc-hh---Hhcce
Confidence 6999999999987 4899999999999999999999999999999999999999999999999986532 22 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+++||+||+.|++....... .+++.++++.+++.++.+++|.+|||||||||+|||||++
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~------- 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKD----PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT------- 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCC----HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS-------
T ss_pred eeccccccCccccHHHHHHHHHhhccccH----HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhc-------
Confidence 99999999999999999999886544322 2468889999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+||||.++.+++++|++++++ | .|||+||||++++.++||||++|++|+|+++|++++
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g----------~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~e 214 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNK----------LTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCC----------cEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 69999999999999999999999999999776 5 699999999999999999999999999999999999
Q ss_pred cc-cCCcHHHHHHh
Q 018638 330 FT-SSSNPIVQQFA 342 (352)
Q Consensus 330 ~~-~~~~~~~~~~~ 342 (352)
++ ++.++++++|+
T Consensus 215 l~~~P~~~~v~~fl 228 (229)
T d3d31a2 215 IFEKPVEGRVASFV 228 (229)
T ss_dssp HHSSCCTTHHHHHH
T ss_pred HHhCCCCHHHHhcc
Confidence 76 46678888876
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3e-66 Score=485.65 Aligned_cols=238 Identities=34% Similarity=0.544 Sum_probs=215.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh---------
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--------- 161 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--------- 161 (352)
.|+++||+|+||+..||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++......
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence 38999999999999999999999999999999999999999999999999999999999999997532111
Q ss_pred --hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHH
Q 018638 162 --EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 162 --~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIA 238 (352)
....+++||||||++.+|+.+||+||+.++.....+.+..+..+++.++++.++|.+ ..+++|.+|||||||||+||
T Consensus 82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iA 161 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 161 (258)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHH
Confidence 111234699999999999999999999998655566778888899999999999976 46889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||+|||+.++.+++++|++++++| .|||+||||++++..+||||++|++
T Consensus 162 raL~~-------~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g----------~til~vtHdl~~~~~~adri~vm~~ 224 (258)
T d1b0ua_ 162 RALAM-------EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG----------KTMVVVTHEMGFARHVSSHVIFLHQ 224 (258)
T ss_dssp HHHHT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT----------CCEEEECSCHHHHHHHCSEEEEEET
T ss_pred HHHhc-------CCCEEEeccccccCCHHHHHHHHHhhhhhcccC----------CceEEEeCCHHHHHHhCCEEEEEEC
Confidence 99996 699999999999999999999999999999887 5999999999999999999999999
Q ss_pred CeEEEeecccccc-cCCcHHHHHHhcCC
Q 018638 319 GKIVWQGMTHEFT-SSSNPIVQQFASGS 345 (352)
Q Consensus 319 G~iv~~g~~~~~~-~~~~~~~~~~~~~~ 345 (352)
|+|+++|++++++ .+.++++++|+.++
T Consensus 225 G~iv~~g~~~ev~~~P~~~~~~~ll~~~ 252 (258)
T d1b0ua_ 225 GKIEEEGDPEQVFGNPQSPRLQQFLKGS 252 (258)
T ss_dssp TEEEEEECHHHHHHSCCSHHHHHHHHHH
T ss_pred CEEEEEcCHHHHHhCCCCHHHHHHHhCc
Confidence 9999999999976 57799999998764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.8e-64 Score=469.06 Aligned_cols=235 Identities=28% Similarity=0.479 Sum_probs=209.6
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.+.+|+++||+|+||+..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+|+|+++... +.....+.
T Consensus 3 sd~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~-~~~~~~r~ 81 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK-PAHVINRM 81 (240)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHHHT
T ss_pred cceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccc-cHHHHHHh
Confidence 36789999999999999999999999999999999999999999999999999999999999999998764 33334445
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc-CCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~-gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
.|+|+||++.+|+.+||+||+.++.... ...+...+.++++++.+ ++.+..++++++|||||||||+|||||++
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~--- 156 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS--- 156 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT---
T ss_pred cccccCcccccCCcccHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHh---
Confidence 6999999999999999999998876433 23344556667777777 68889999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||+||||.++.+++++|++++++| +|||+||||++++.++||||++|++|+|+++|+
T Consensus 157 ----~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g----------~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~ 222 (240)
T d1ji0a_ 157 ----RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG----------TTILLVEQNALGALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp ----CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred ----CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 699999999999999999999999999998887 699999999999999999999999999999999
Q ss_pred ccccccCCcHHHHHHhcC
Q 018638 327 THEFTSSSNPIVQQFASG 344 (352)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~ 344 (352)
++++.. ++.+++.|.|
T Consensus 223 ~~el~~--~~~v~~~ylG 238 (240)
T d1ji0a_ 223 ASELLD--NEMVRKAYLG 238 (240)
T ss_dssp HHHHHT--CHHHHHHHSC
T ss_pred HHHHhc--CHHHHHHhCc
Confidence 999874 4667777655
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3e-64 Score=464.23 Aligned_cols=219 Identities=37% Similarity=0.554 Sum_probs=195.5
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--h
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~--~ 164 (352)
||+++||+|+|+. ..||+||||+|++||++||+||||||||||+++|+|+++|++|+|+|+|+++........ .
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 6899999999953 248999999999999999999999999999999999999999999999999876533221 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL 241 (352)
++.+||||||++.+||.+||+||+++++... ...+.++..+++.++|+.++|.+ +.+++|++|||||||||+|||||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL 160 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhh
Confidence 2336999999999999999999999987543 24567777888999999999976 68999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
++ +|++|||||||++||+.++.+++++|++++++ | +|||+||||++++ ++||||++|++|+
T Consensus 161 ~~-------~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g----------~tii~vTHd~~~a-~~~drv~~m~~G~ 222 (230)
T d1l2ta_ 161 AN-------NPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG----------KTVVVVTHDINVA-RFGERIIYLKDGE 222 (230)
T ss_dssp TT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTC----------CEEEEECSCHHHH-TTSSEEEEEETTE
T ss_pred hc-------CCCEEEecCCccccCHHHHHHHHHHHHHHHHhhC----------CEEEEECCCHHHH-HhCCEEEEEECCE
Confidence 97 69999999999999999999999999999876 5 6999999999987 6999999999999
Q ss_pred EEEeecc
Q 018638 321 IVWQGMT 327 (352)
Q Consensus 321 iv~~g~~ 327 (352)
|+++|.+
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9999964
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.6e-64 Score=468.47 Aligned_cols=237 Identities=29% Similarity=0.479 Sum_probs=208.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|+++||+|+||+.+||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+|+|+++... +.....+.+|
T Consensus 3 ~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~-~~~~~~~~gi 81 (254)
T d1g6ha_ 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK-EPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHHHHTE
T ss_pred ceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccch-hHHHHHHhcC
Confidence 379999999999999999999999999999999999999999999999999999999999999998764 3444444569
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhh------------cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYE------------NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~------------~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI 237 (352)
+|+||++.+|+.+||+||+.++... ......++..+++.++++.+++.+..++++++|||||||||+|
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~i 161 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 161 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHH
Confidence 9999999999999999999886421 1112344556778899999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||+|||+.++.+++++|++++++| +|||+||||++++.++||||++|+
T Consensus 162 AraL~~-------~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g----------~til~vsHdl~~~~~~~Drv~vm~ 224 (254)
T d1g6ha_ 162 GRALMT-------NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG----------ITFLIIEHRLDIVLNYIDHLYVMF 224 (254)
T ss_dssp HHHHHT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCCSTTGGGCSEEEEEE
T ss_pred HHHHHh-------CcCchhhcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCcHHHHHHhCCEEEEEe
Confidence 999997 699999999999999999999999999998887 699999999999999999999999
Q ss_pred CCeEEEeecccccccC--CcHHHHHHhcC
Q 018638 318 EGKIVWQGMTHEFTSS--SNPIVQQFASG 344 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~--~~~~~~~~~~~ 344 (352)
+|+|+++|+++|+... .++.+.+.+.|
T Consensus 225 ~G~iv~~g~~~e~~~~~~~~~~v~~~ylG 253 (254)
T d1g6ha_ 225 NGQIIAEGRGEEEIKNVLSDPKVVEIYIG 253 (254)
T ss_dssp TTEEEEEEESHHHHHHHHHCHHHHHTTTT
T ss_pred CCEEEEEecHHHHhhcccCCHHHHHccCc
Confidence 9999999999885422 34556665543
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5e-63 Score=457.88 Aligned_cols=226 Identities=32% Similarity=0.522 Sum_probs=205.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
.|++ ++.|+||+..+ ||||++. +|+++|+||||||||||+|+|+|+++|++|+|+|+|+++..... .+++||
T Consensus 2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~----~~r~ig 73 (240)
T d2onka1 2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP----ERRGIG 73 (240)
T ss_dssp CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT----TTSCCB
T ss_pred EEEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCH----HHcCce
Confidence 4788 67999998765 8999995 68999999999999999999999999999999999999876432 234799
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+||++||+|||.|++. ..++.+.++++.++++.+||.++.+++|++|||||||||+|||||++
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~------- 143 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLR---NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI------- 143 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCT---TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred eeccchhhcccchhhHhhhhhhc---ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhc-------
Confidence 99999999999999999999763 35667778889999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+||||.++..+++.|+++.++ | +|||+||||++++.++||||++|++|+|++.|++++
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g----------~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~e 213 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD----------VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT----------CCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred cCCceEecCccccCCHHHHHHHHHHHHHHHHhcC----------CeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHH
Confidence 69999999999999999999999999999765 5 699999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHhcC
Q 018638 330 FTSSSNPIVQQFASG 344 (352)
Q Consensus 330 ~~~~~~~~~~~~~~~ 344 (352)
++++.++++.+|+.+
T Consensus 214 l~~~~~~~v~~fl~~ 228 (240)
T d2onka1 214 LFSAKNGEVAEFLSA 228 (240)
T ss_dssp HHHSCCSSHHHHGGG
T ss_pred HhcCCCHHHHHHhCc
Confidence 987778888888753
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.4e-62 Score=450.15 Aligned_cols=219 Identities=28% Similarity=0.493 Sum_probs=203.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+|+||+++||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ... .+.++||
T Consensus 3 I~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~--~~~-~~~~i~~ 79 (238)
T d1vpla_ 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE--PHE-VRKLISY 79 (238)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC--HHH-HHTTEEE
T ss_pred EEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC--hHH-HHhhEeE
Confidence 8999999999999999999999999999999999999999999999999999999999999997642 222 2346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
|||++.+|+.+|+.||+.|....+ ..+..+..+.++.+++.++|.+..++++.+||||||||++|||||++ +
T Consensus 80 vpq~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~-------~ 151 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV-------N 151 (238)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT-------C
T ss_pred eeeccccCCCccHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999999999999876544 35677788889999999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
|++|||||||+||||.++.+++++|++++++| .|||++|||++++..+||||++|++|+|+++|+++++.
T Consensus 152 p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g----------~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~ 221 (238)
T d1vpla_ 152 PRLAILDEPTSGLDVLNAREVRKILKQASQEG----------LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 221 (238)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999998887 59999999999999999999999999999999999975
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-59 Score=432.54 Aligned_cols=222 Identities=30% Similarity=0.509 Sum_probs=184.5
Q ss_pred EEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+|+|+ ++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+|+|+++.... ..++ +.+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~-~~~l-r~~i 79 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD-PNWL-RRQV 79 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC-HHHH-HHHE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccc-hhhh-hceE
Confidence 79999999994 467999999999999999999999999999999999999999999999999987653 3333 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-----------cccccCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-----------GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~~~~~~LSGGqrQRvaIA 238 (352)
+||||++.+|+ .||+|||.++.. ..+.++ +.++++..++. ....+.+.+|||||||||+||
T Consensus 80 ~~v~Q~~~lf~-~Ti~eNi~~~~~---~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalA 151 (241)
T d2pmka1 80 GVVLQDNVLLN-RSIIDNISLANP---GMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 151 (241)
T ss_dssp EEECSSCCCTT-SBHHHHHCTTST---TCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHH
T ss_pred EEEecccccCC-ccccccccccCc---cccHHH----HHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhh
Confidence 99999999997 699999988531 233333 33344444432 344556789999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||++ +|+|||||||||+||+.++..+++.|+++.+ + +|+|+||||++.+. .||||++|++
T Consensus 152 Ral~~-------~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~----------~Tvi~itH~l~~~~-~~D~i~vl~~ 212 (241)
T d2pmka1 152 RALVN-------NPKILIFDEATSALDYESEHVIMRNMHKICK-G----------RTVIIIAHRLSTVK-NADRIIVMEK 212 (241)
T ss_dssp HHHTT-------CCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-T----------SEEEEECSSGGGGT-TSSEEEEEET
T ss_pred hhhhc-------ccchhhhhCCccccCHHHHHHHHHHHHHHhC-C----------CEEEEEECCHHHHH-hCCEEEEEEC
Confidence 99997 6999999999999999999999999999865 4 59999999999875 6899999999
Q ss_pred CeEEEeecccccccCCcHHHHHHh
Q 018638 319 GKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 319 G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|+|++.|++++++...+....+++
T Consensus 213 G~Iv~~G~~~ell~~~~~~y~~l~ 236 (241)
T d2pmka1 213 GKIVEQGKHKELLSEPESLYSYLY 236 (241)
T ss_dssp TEEEEEECHHHHHHSTTCHHHHHH
T ss_pred CEEEEECCHHHHHhCCCCHHHHHH
Confidence 999999999998754433334443
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-59 Score=436.64 Aligned_cols=229 Identities=26% Similarity=0.452 Sum_probs=189.1
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 91 LIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.|+++||+|+|++ +.+|+||||+|++||++|||||||||||||+++|+|+++|++|+|+|+|+++.... .... ++
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~-~~~~-r~ 88 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE-HRYL-HR 88 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC-HHHH-HH
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhh-hHHH-HH
Confidence 3999999999975 35999999999999999999999999999999999999999999999999987543 2222 34
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHH-----HHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL-----VKENLAAV--GLKGVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArA 240 (352)
+|+||||++.+|+ .||+||+.++.... .......+. ..+.++.+ |++...++.+.+|||||||||+||||
T Consensus 89 ~i~~v~Q~~~lf~-~tv~eni~~g~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 89 QVAAVGQEPQVFG-RSLQENIAYGLTQK--PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHCSCSSC--CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HhhhccccccccC-cchhhhhhhhhccc--chHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeec
Confidence 6999999999997 59999999875221 222222111 12334444 45566778889999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
|++ +|+||||||||++||+.++..+++.|+++.++ + +|+|+||||++.+. .||||++|++|
T Consensus 166 l~~-------~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~----------~Tvi~itH~l~~~~-~aDrI~vl~~G 227 (251)
T d1jj7a_ 166 LIR-------KPCVLILDDATSALDANSQLQVEQLLYESPERYS----------RSVLLITQHLSLVE-QADHILFLEGG 227 (251)
T ss_dssp HTT-------CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGG----------CEEEEECSCHHHHH-TCSEEEEEETT
T ss_pred ccc-------CCcEEEecCcCcccChhhHHHHHHHHHHHhhhcC----------CEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 997 69999999999999999999999999998764 4 59999999999885 59999999999
Q ss_pred eEEEeecccccccCCcHHHHHHhc
Q 018638 320 KIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 320 ~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
+|+++|++++++..... .++++.
T Consensus 228 ~iv~~Gt~~eLl~~~~~-y~~l~~ 250 (251)
T d1jj7a_ 228 AIREGGTHQQLMEKKGC-YWAMVQ 250 (251)
T ss_dssp EEEEEECHHHHHHHTSH-HHHHHC
T ss_pred EEEEECCHHHHHhCCcH-HHHHhc
Confidence 99999999998765443 355543
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1e-59 Score=437.46 Aligned_cols=225 Identities=29% Similarity=0.532 Sum_probs=188.0
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
||+++||+|+|++ +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+|+|+++....... . +.+|
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~-~-r~~i 78 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN-W-RSQI 78 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSC-C-TTTC
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHH-H-Hhhe
Confidence 6999999999954 67999999999999999999999999999999999999999999999999987653322 2 3469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc-----------cCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-----------RLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSGGqrQRvaIA 238 (352)
|||||++.+|+. ||+||+.++... ....+. +.+.++.+++.++.. ..+.+|||||||||+||
T Consensus 79 ~~v~Q~~~lf~~-ti~eNi~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iA 151 (242)
T d1mv5a_ 79 GFVSQDSAIMAG-TIRENLTYGLEG--DYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (242)
T ss_dssp CEECCSSCCCCE-EHHHHTTSCTTS--CSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEEccccccCCc-chhhheeccccc--ccchhh----HHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHH
Confidence 999999999985 999999875421 123332 344455555543332 34567999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||++ +|+|||||||||+||+.++..+++.|+++.+ + +|+|+||||++.+.. ||||++|++
T Consensus 152 Ral~~-------~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~----------~Tvi~itH~l~~~~~-~D~i~vl~~ 212 (242)
T d1mv5a_ 152 RAFLR-------NPKILMLDEATASLDSESESMVQKALDSLMK-G----------RTTLVIAHRLSTIVD-ADKIYFIEK 212 (242)
T ss_dssp HHHHH-------CCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-T----------SEEEEECCSHHHHHH-CSEEEEEET
T ss_pred HHHhc-------CCCEEEecCCccccCHHHHHHHHHHHHHHcC-C----------CEEEEEECCHHHHHh-CCEEEEEEC
Confidence 99997 5999999999999999999999999999974 4 599999999998864 999999999
Q ss_pred CeEEEeecccccccCCcHHHHHHhcC
Q 018638 319 GKIVWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 319 G~iv~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
|+|++.|+++|++.. ++..++++..
T Consensus 213 G~iv~~G~~~eLl~~-~~~y~~l~~~ 237 (242)
T d1mv5a_ 213 GQITGSGKHNELVAT-HPLYAKYVSE 237 (242)
T ss_dssp TEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred CEEEEECCHHHHHhC-ChHHHHHHHH
Confidence 999999999998754 5666777653
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.3e-57 Score=424.07 Aligned_cols=222 Identities=27% Similarity=0.446 Sum_probs=185.8
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+|+|++ .++|+||||+|++||++|||||||||||||+++|+|+++|++|+|+++|+++.... ...+ +.+|
T Consensus 14 I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~-~~~~-r~~i 91 (253)
T d3b60a1 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT-LASL-RNQV 91 (253)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC-HHHH-HHTE
T ss_pred EEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhh-hhhh-hheE
Confidence 999999999975 45999999999999999999999999999999999999999999999999987643 3332 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-----------CCcccccCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-----------LKGVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g-----------L~~~~~~~~~~LSGGqrQRvaIA 238 (352)
+||||++.+|+ .|+++|+.++.. ...+.++ +.++++.++ ++....+.+.+|||||||||+||
T Consensus 92 ~~v~Q~~~l~~-~ti~~n~~~~~~--~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiA 164 (253)
T d3b60a1 92 ALVSQNVHLFN-DTVANNIAYART--EEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 164 (253)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTTT--SCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred EEEeeccccCC-cchhhhhhhcCc--ccCCHHH----HHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHH
Confidence 99999999997 599999988632 1233433 334444443 44455667889999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||++ +|+|||||||||+||+.++..+++.|+++.+ + +|+|+||||++.+. .||||++|++
T Consensus 165 Ral~~-------~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~----------~Tvi~itH~l~~~~-~~D~v~vl~~ 225 (253)
T d3b60a1 165 RALLR-------DSPILILDEATSALDTESERAIQAALDELQK-N----------RTSLVIAHRLSTIE-QADEIVVVED 225 (253)
T ss_dssp HHHHH-------CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-T----------SEEEEECSCGGGTT-TCSEEEEEET
T ss_pred HHHhc-------CCCEEEeccccccCCHHHHHHHHHHHHHhcc-C----------CEEEEEECCHHHHH-hCCEEEEEEC
Confidence 99998 5999999999999999999999999999975 4 59999999999875 6999999999
Q ss_pred CeEEEeecccccccCCcHHHHHHh
Q 018638 319 GKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 319 G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|+|++.|++++++... +..++++
T Consensus 226 G~Iv~~G~~~eLl~~~-~~y~~l~ 248 (253)
T d3b60a1 226 GIIVERGTHSELLAQH-GVYAQLH 248 (253)
T ss_dssp TEEEEEECHHHHHHHT-SSHHHHH
T ss_pred CEEEEECCHHHHHhCC-cHHHHHH
Confidence 9999999999987543 3344444
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.1e-57 Score=424.63 Aligned_cols=221 Identities=28% Similarity=0.457 Sum_probs=187.3
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ...+ +.+|
T Consensus 17 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~-~~~l-r~~i 94 (255)
T d2hyda1 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL-TGSL-RNQI 94 (255)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC-HHHH-HHTE
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCC-HHHh-hhee
Confidence 999999999965 56999999999999999999999999999999999999999999999999987653 3333 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccccc-----------CCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR-----------LPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSGGqrQRvaIA 238 (352)
+||||++.+|+ .||+|||.|+. .....+ ++.++++.+++.++..+ .+.+|||||||||+||
T Consensus 95 ~~v~Q~~~lf~-~Ti~eNi~~g~---~~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iA 166 (255)
T d2hyda1 95 GLVQQDNILFS-DTVKENILLGR---PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166 (255)
T ss_dssp EEECSSCCCCS-SBHHHHHGGGC---SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred eeeeccccCCC-CCHHHHHhccC---cCCCHH----HHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHH
Confidence 99999999997 59999998863 112332 35667777777554333 3468999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||++ +|+|||||||||+||+.++..+++.|+++.+ + .|+|+||||++.+. .||||++|++
T Consensus 167 Ral~~-------~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~----------~TvI~itH~~~~~~-~~D~ii~l~~ 227 (255)
T d2hyda1 167 RIFLN-------NPPILILDEATSALDLESESIIQEALDVLSK-D----------RTTLIVAHRLSTIT-HADKIVVIEN 227 (255)
T ss_dssp HHHHH-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-T----------SEEEEECSSGGGTT-TCSEEEEEET
T ss_pred HHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 99998 5999999999999999999999999999865 3 49999999999875 6899999999
Q ss_pred CeEEEeecccccccCCcHHHHHHh
Q 018638 319 GKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 319 G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|+|++.|++++++... +..++++
T Consensus 228 G~iv~~G~~~eLl~~~-~~y~~l~ 250 (255)
T d2hyda1 228 GHIVETGTHRELIAKQ-GAYEHLY 250 (255)
T ss_dssp TEEEEEECHHHHHHTT-SHHHHHH
T ss_pred CEEEEECCHHHHHhCC-cHHHHHH
Confidence 9999999999987654 3345555
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-54 Score=399.29 Aligned_cols=228 Identities=24% Similarity=0.358 Sum_probs=191.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|+++||+++| +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++..+. .... +.+.
T Consensus 2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~-~~~~-~~~~ 74 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWS-ATKL-ALHR 74 (231)
T ss_dssp EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSC-HHHH-HHHE
T ss_pred eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCC-HHHH-Hhhc
Confidence 479999998765 699999999999999999999999999999999976 68999999999876542 2222 2358
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|++|+.......++++++.+... . +...+.+.++++.+++.++.++++++|||||||||+|||||++.++.-.
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~--~----~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~ 148 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQH--D----KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQAN 148 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCS--C----TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTC
T ss_pred eeeeccccCCccccHHHHhhhccc--h----hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccC
Confidence 999998876556799999887532 1 1223457889999999999999999999999999999999986211111
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
.+|+||||||||+|||+.++..++++|++++++| .|||+||||++++.++||||++|++|+|+++|++++
T Consensus 149 p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g----------~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~e 218 (231)
T d1l7vc_ 149 PAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG----------LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 218 (231)
T ss_dssp TTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTT----------CEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHH
Confidence 2579999999999999999999999999998887 699999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHh
Q 018638 330 FTSSSNPIVQQFA 342 (352)
Q Consensus 330 ~~~~~~~~~~~~~ 342 (352)
+++ ++.+.+.|
T Consensus 219 v~~--~~~l~~~y 229 (231)
T d1l7vc_ 219 VLT--PPNLAQAY 229 (231)
T ss_dssp HSC--HHHHHHHH
T ss_pred HhC--ChHHHHhh
Confidence 874 45555544
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.5e-51 Score=388.51 Aligned_cols=208 Identities=23% Similarity=0.372 Sum_probs=167.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++ |+++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|+|
T Consensus 39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---------------~i~~ 101 (281)
T d1r0wa_ 39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---------------RVSF 101 (281)
T ss_dssp -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---------------CEEE
T ss_pred EEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---------------EEEE
Confidence 5555554 4678999999999999999999999999999999999999999999999987 3899
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-----------CcccccCCCCCChHHHHHHHHHHH
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-----------KGVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL-----------~~~~~~~~~~LSGGqrQRvaIArA 240 (352)
+||++.+|+ .||+|||.|+.. ..... ..++++.+++ .....+.+.+|||||||||+||||
T Consensus 102 v~Q~~~l~~-~tv~eni~~~~~----~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARa 172 (281)
T d1r0wa_ 102 CSQFSWIMP-GTIKENIIFGVS----YDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA 172 (281)
T ss_dssp ECSSCCCCS-EEHHHHHTTTSC----CCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHH
T ss_pred EeccccccC-ceeecccccccc----ccchH----HHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHH
Confidence 999999998 499999988642 22222 2233333332 223445567899999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|++ +|+||||||||++||+.++..+++.+.....++ .|+|+|||+++.+ +.||||++|++|+
T Consensus 173 L~~-------~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~----------~tvi~itH~~~~l-~~aDrI~vl~~G~ 234 (281)
T d1r0wa_ 173 VYK-------DADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN----------KTRILVTSKMEHL-RKADKILILHQGS 234 (281)
T ss_dssp HHS-------CCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTT----------SEEEEECSCHHHH-HTCSEEEEEETTE
T ss_pred HHh-------CccchhhcCccccCCHHHHHHHHHHHHHHhhCC----------CEEEEEechHHHH-HhCCEEEEEECCE
Confidence 997 599999999999999999999887543332334 5999999999877 5699999999999
Q ss_pred EEEeecccccccCCcHHHHHHhc
Q 018638 321 IVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 321 iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
|++.|+++|+......+...++.
T Consensus 235 i~~~Gt~~eL~~~~~~~~~~~~~ 257 (281)
T d1r0wa_ 235 SYFYGTFSELQSLRPDFSSKLMG 257 (281)
T ss_dssp EEEEECHHHHHHHCHHHHHHHHT
T ss_pred EEEECCHHHHhccCcHHHHHHcC
Confidence 99999999987554455555553
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.6e-50 Score=361.24 Aligned_cols=195 Identities=22% Similarity=0.309 Sum_probs=166.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
.|+++||+++|+ +++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .+.+++
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-------~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-------VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-------GGGGEE
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-------hcCcEE
Confidence 489999999996 579999999999999999999999999999999999999999999999998642 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+||+..+++.+|+++|+.+....+.. .+. +++.++++.+++.+ .++++.+|||||||||+|||||+.
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~----~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~------ 142 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNK----NEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLV------ 142 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCH----HHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTS------
T ss_pred EEeecccCCCCcCHHHHHHHHHHhcCCccCH----HHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhc------
Confidence 999999998899999999886644322 222 33667888888865 356789999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
+|+++||||||+|||+.++..+++.|.++.+++. ++||+++|++ .+||++.+|++
T Consensus 143 -~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~---------~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 143 -NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG---------IVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp -CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS---------EEEEEESSCC----TTSSEEEEGGG
T ss_pred -CCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCC---------EEEEEEechh----hhcchhhheee
Confidence 5999999999999999999999999999876532 5666666765 47999998864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.74 E-value=2.7e-20 Score=159.60 Aligned_cols=154 Identities=15% Similarity=0.046 Sum_probs=99.6
Q ss_pred EEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecC-----CCCCCCCCHHHHHHhhhhh
Q 018638 120 VGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS-----AALFDSLTVRENVGFLLYE 194 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~-----~~l~~~lTV~eni~~~~~~ 194 (352)
++|+||||||||||+++|+|.++|+.|.+.+.+.+.... . ++.++..+. ..+.. .+......+. .
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~ 72 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPET---K----KRTGFRIITTEGKKKIFSS-KFFTSKKLVG--S 72 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-------------CCEEEEEETTCCEEEEEE-TTCCCSSEET--T
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHH---H----HhhhhhhhhhhHHHHHHhh-hhhhhhhhhh--h
Confidence 799999999999999999999999999999988653211 1 122222111 11110 0000000000 0
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 018638 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274 (352)
Q Consensus 195 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ 274 (352)
. .... ...++|+|+++|.++++++.. +|+++++|||....+ ....+.+
T Consensus 73 ~-~~~~----------------------~~~~~~~~~~~~~~l~~~~~~-------~~~vlllDE~~~~~~--~~~~~~~ 120 (178)
T d1ye8a1 73 Y-GVNV----------------------QYFEELAIPILERAYREAKKD-------RRKVIIIDEIGKMEL--FSKKFRD 120 (178)
T ss_dssp E-EECH----------------------HHHHHHHHHHHHHHHHHHHHC-------TTCEEEECCCSTTGG--GCHHHHH
T ss_pred h-hcCc----------------------chhhhhhhhhHHHHHHHHHhc-------CCCceeecCCCccch--hhHHHHH
Confidence 0 0011 112488999999999999986 699999999854433 3345556
Q ss_pred HHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 275 LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 275 ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
.+.++.++.. .++|+++|+... ..++|++..+.+|+++.-+
T Consensus 121 ~l~~~l~~~~---------~~il~~~h~~~~-~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 121 LVRQIMHDPN---------VNVVATIPIRDV-HPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp HHHHHHTCTT---------SEEEEECCSSCC-SHHHHHHHTCTTCEEEECC
T ss_pred HHHHHhccCC---------CEEEEEEccHHH-HHhhceEEEEeCCEEEEEC
Confidence 6666544321 599999999764 4577999999999998765
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.37 E-value=1.1e-12 Score=121.01 Aligned_cols=81 Identities=28% Similarity=0.343 Sum_probs=65.3
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH
Q 018638 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (352)
Q Consensus 224 ~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl 303 (352)
...+|+|||+...++..++.. ....+.++++|||-++|+|..+..+.+.|+++.++ .-||++||..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~---~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~-----------~QviitTHsp 282 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALM---EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKH-----------TQFIVITHNK 282 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHT---TTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTT-----------SEEEEECCCT
T ss_pred hhhhhHHHhhHHHHHhhhhhh---hhccCchhhhhhccccCCHHHHHHHHHHHHHhccC-----------CEEEEEECCH
Confidence 468999999998887765321 13468899999999999999999999999988654 3699999999
Q ss_pred HHHHhhcCEEEE--EeCC
Q 018638 304 STIRRAVDRLIF--LYEG 319 (352)
Q Consensus 304 ~~i~~~aDrv~v--L~~G 319 (352)
..+. .+|+++. +.+|
T Consensus 283 ~~~~-~~d~~~~v~~~~g 299 (308)
T d1e69a_ 283 IVME-AADLLHGVTMVNG 299 (308)
T ss_dssp TGGG-GCSEEEEEEESSS
T ss_pred HHHH-hcccEEEEEEeCC
Confidence 8886 4699855 5566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=7.1e-10 Score=105.20 Aligned_cols=79 Identities=23% Similarity=0.290 Sum_probs=62.3
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH
Q 018638 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (352)
Q Consensus 224 ~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl 303 (352)
...||||||.+++||..++.- ...++++++||||+++||+..+..+.++|.++...+ .-+|+|||+.
T Consensus 330 ~~~lSgGEk~~~~lal~lal~---~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~----------~Q~I~iTH~~ 396 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAIN---SYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPD----------LQFIVISLKN 396 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHH---TSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTT----------BEEEEECSCH
T ss_pred hhhhccchHHHHHHHHHHHHh---cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCC----------CEEEEEeCCH
Confidence 367899999998887554221 124578999999999999999999999998875333 3599999999
Q ss_pred HHHHhhcCEEEEE
Q 018638 304 STIRRAVDRLIFL 316 (352)
Q Consensus 304 ~~i~~~aDrv~vL 316 (352)
..+. .||+++.+
T Consensus 397 ~~~~-~ad~~~~V 408 (427)
T d1w1wa_ 397 TMFE-KSDALVGV 408 (427)
T ss_dssp HHHT-TCSEEEEE
T ss_pred HHHH-hcccEEEE
Confidence 8765 57997755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.28 E-value=4.5e-06 Score=74.13 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=37.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~-~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
+..++|+||+..|=|+.....+. ..+..|.+.+ ..++++||..+...
T Consensus 114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~----------~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERR----------AYTLFATHYFELTA 161 (224)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEECCCHHHHT
T ss_pred CCcEEeecccccCcchhhhcchHHHHHHHHhhcC----------cceEEeeechhhhh
Confidence 46799999999999998877765 5556676665 48999999987654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=9.2e-06 Score=72.47 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=36.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHH
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~-~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i 306 (352)
+..++|+||+..|=++.....+. ..+..+..+.. ..+|++||..+..
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~---------~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK---------ALTLFATHYFELT 167 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTC---------CEEEEECSCGGGG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhcccc---------ceEEEecchHHHh
Confidence 45699999999999999988875 45667765532 4789999987644
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=5.7e-07 Score=74.92 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=29.5
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.+++.+|++.+| +++|+|||||||||+|.+|.-+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 467888888876 9999999999999999999744
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.83 E-value=8.8e-05 Score=66.07 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=26.8
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
-|+++..=+.+|+++.|.|++|+|||||+.-++
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 344444347899999999999999999987776
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=1.7e-05 Score=64.82 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+++|+|++|||||||++.|+.-+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999986544
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.55 E-value=1.8e-05 Score=66.74 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
|.++.|+||||||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999876653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.50 E-value=2.5e-05 Score=64.10 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
.|+++.|.||+||||||+.+.|+..+... -+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEecH
Confidence 58999999999999999999999865321 345555
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=9.2e-06 Score=66.68 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=28.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
.+.|+||+|+|||||++.++..+....+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5889999999999999999999987766665543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.46 E-value=3.1e-05 Score=68.67 Aligned_cols=35 Identities=34% Similarity=0.386 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i 150 (352)
+|..++++|+||+|||||+|.|.|-..-..|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence 48899999999999999999999977777788764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.41 E-value=3.3e-05 Score=63.10 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+|-++.|+|++||||||+.+.|+--+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999544
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=4.1e-05 Score=62.67 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.+.++.|+||+||||||+.+.|+.-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.29 E-value=2.9e-05 Score=64.24 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
.+++|+|++|||||||++-|...++.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999988776654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.28 E-value=6e-05 Score=61.58 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
..++|+||.|||||||.+.|+-.+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999765
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.27 E-value=6.4e-05 Score=70.09 Aligned_cols=41 Identities=29% Similarity=0.549 Sum_probs=29.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
|+++|. ++|.+. ..+++..+.+++|+|||||||||+|.+|.
T Consensus 6 l~l~NF-ks~~~~-----~~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 6 LELSNF-KSYRGV-----TKVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEESC-SSCCSE-----EEEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEEeCe-eeeCCC-----EEEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 566663 355432 23444556699999999999999999984
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.25 E-value=3.2e-05 Score=68.88 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i 150 (352)
+|..++++|+||+|||||+|.|.|-..-..|+|.=
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence 57889999999999999999999977777788863
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=8.6e-05 Score=64.45 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+|.++.|+||||||||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999887543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.19 E-value=9.3e-05 Score=60.26 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999874
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.18 E-value=9.5e-05 Score=60.43 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|-.+.|.||+||||||+.+.|+--+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998754
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=8.4e-05 Score=59.37 Aligned_cols=23 Identities=43% Similarity=0.652 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998754
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.0063 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.+|+++.|.|+.|+|||||+--|+-
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999876653
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.14 E-value=9.3e-05 Score=61.59 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
++||-||+|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=9e-05 Score=61.75 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998644
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.11 E-value=0.00012 Score=59.95 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPD 144 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~ 144 (352)
+.+++|.|+.||||||+++.|+-.+...
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999998665443
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.10 E-value=0.00012 Score=58.72 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=23.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
+++.|.|++|||||||.+.|..- ..|.+.+..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh---CCCCEEech
Confidence 47889999999999999977531 225555554
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.04 E-value=0.00013 Score=59.31 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+.|+||+||||||+.+.|+--
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999753
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.03 E-value=0.00015 Score=58.62 Aligned_cols=32 Identities=44% Similarity=0.627 Sum_probs=25.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
.++.|.||+||||||+.+.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 4789999999999999999997653 3455554
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.88 E-value=0.00045 Score=57.32 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.+||+|..|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999974
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.84 E-value=0.00024 Score=60.00 Aligned_cols=22 Identities=55% Similarity=0.729 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.|+||||||||||++.|+--.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999987643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.84 E-value=0.00023 Score=59.94 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999853
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.81 E-value=0.00028 Score=60.76 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.0003 Score=60.14 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++||.|++|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.00044 Score=57.07 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
|++|+++.|.||+|||||||+.-++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999887765
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.72 E-value=0.00036 Score=58.64 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
..++.|+||.||||||+.+.|+--
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999853
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.72 E-value=0.00034 Score=59.37 Aligned_cols=21 Identities=52% Similarity=0.695 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++|+||||||||||++.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.71 E-value=0.00031 Score=58.07 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-++|+|+.|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.70 E-value=0.00041 Score=57.05 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999843
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00042 Score=58.46 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999988853
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.67 E-value=0.00023 Score=59.30 Aligned_cols=21 Identities=38% Similarity=0.752 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
|||+|+.++|||||++.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999774
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.00045 Score=56.75 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+|+|+|..|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.65 E-value=0.00041 Score=57.09 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998765
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.61 E-value=0.00043 Score=55.06 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999974
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.60 E-value=0.00032 Score=57.33 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|||++|||||||++.+.+=.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.59 E-value=0.00053 Score=56.84 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+++|+|..|+|||||++.|.|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.58 E-value=0.00049 Score=56.40 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.++.|.|++||||||+.+.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999997764
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.56 E-value=0.00048 Score=55.29 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+|++|+|||||++.+.+-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999998753
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.56 E-value=0.00054 Score=57.66 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~ 151 (352)
+-.++.|+||.||||||+.+.|+--+ |-+.|+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 34579999999999999999998755 445554
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.55 E-value=0.00049 Score=54.92 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+.|+|+.|||||||++.+.+-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998753
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.54 E-value=0.00049 Score=56.85 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999998543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.53 E-value=0.00053 Score=57.68 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|||||||++.|.|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.52 E-value=0.00066 Score=56.81 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
|+|=.+.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677788999999999999999993
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.51 E-value=0.00041 Score=57.53 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+||+|..|+|||||++.|.|-.
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998853
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.50 E-value=0.00047 Score=58.10 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++++.++.|+||.||||||+.+.|+--+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998643
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.46 E-value=0.00064 Score=55.80 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.|+|+.||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998655
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.00072 Score=56.59 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++.|+||.||||||..+.|+--
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.41 E-value=0.00057 Score=57.26 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999997533
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00086 Score=54.09 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.|.|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999853
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.37 E-value=0.00085 Score=55.25 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.|+||.||||||+.+.|+--+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999996543
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.33 E-value=0.00091 Score=56.00 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++.++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999644
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.00093 Score=56.45 Aligned_cols=30 Identities=40% Similarity=0.607 Sum_probs=25.2
Q ss_pred EEEEEcCCCchHHHHHHHHH---cCCCCCceEE
Q 018638 119 AVGIIGPSGTGKSTILKIIA---GLLAPDKGEV 148 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~---Gl~~p~~G~I 148 (352)
+++|.||.||||||+.+.|+ |+..-++|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 89999999999999999998 5555566765
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.31 E-value=0.00083 Score=56.23 Aligned_cols=21 Identities=38% Similarity=0.726 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.30 E-value=0.00067 Score=62.77 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=30.3
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i 150 (352)
+..+.-+.|.|+.|||||||++.|++.++|+.=-|.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 3445568999999999999999999999887555555
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.27 E-value=0.00098 Score=56.72 Aligned_cols=30 Identities=43% Similarity=0.655 Sum_probs=23.4
Q ss_pred EEEEEcCCCchHHHHHHHHHc---CCCCCceEE
Q 018638 119 AVGIIGPSGTGKSTILKIIAG---LLAPDKGEV 148 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G---l~~p~~G~I 148 (352)
+++|-||.||||||+.+.|+- +..-++|.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 478889999999999999984 444455543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.00048 Score=56.41 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.++|||||+|.|.|-.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998854
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.22 E-value=0.00076 Score=56.48 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.=+++|-|+.||||||+++.|+..+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998755
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.21 E-value=0.00099 Score=54.12 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+|+.|||||||++.+.+-.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999998854
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.20 E-value=0.00091 Score=58.26 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=26.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
..+.|.||.|||||||.+.|++-+.. +-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 45889999999999999999997643 3455554
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.18 E-value=0.0012 Score=54.76 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.17 E-value=0.0012 Score=55.13 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.0
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHH
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455799999999999999999874
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.00088 Score=57.53 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998774
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.07 E-value=0.00047 Score=55.67 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++|+|+.|+|||||++.|.|-
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.04 E-value=0.0016 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
+++|+++-|.||.|||||||..-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 79999999999999999999977753
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0016 Score=55.41 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+|.+++|-|+-||||||+++.|+-.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998644
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.00099 Score=61.32 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
++||-|++||||||+.+.|.-++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 799999999999999999988763
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0015 Score=53.95 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.+.|+||.||||||..+.|+--
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999843
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.01 E-value=0.0017 Score=53.73 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999997543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.0016 Score=56.04 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
++|-+++|-|+-||||||+.+.|.--+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999877543
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.00 E-value=0.0015 Score=53.25 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|..|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.94 E-value=0.0015 Score=58.00 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+|.+|+|||||+|.|.|-.
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999999964
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.94 E-value=0.0017 Score=55.34 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
++||.|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.92 E-value=0.0016 Score=55.03 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-++|+|+.|+|||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.92 E-value=0.002 Score=55.57 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=30.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCC--ceEEEECCEeC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPD--KGEVYIRGRKR 155 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~--~G~I~i~G~~~ 155 (352)
.+|-++-|.|.+|||||||.+.|.--+... .-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 578899999999999999999997433211 23577888654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.81 E-value=0.0019 Score=52.47 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|++|+|||||++.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999998765
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.80 E-value=0.0021 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+||||...||||||++.|.|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.78 E-value=0.0025 Score=55.21 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++.+++++||+|+||||.+-=|+-.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999866666543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.78 E-value=0.0023 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHc
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.+.++.|.||.|+|||||++.++-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 467899999999999999998764
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.0025 Score=52.88 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+.|+||.||||||+.+.|+--
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 668999999999999999864
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.75 E-value=0.0024 Score=55.31 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+.|.||+|+||||++++|+.-+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999998653
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.75 E-value=0.0022 Score=55.02 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.|.||+|+|||||+++|+.-+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6799999999999999998754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.74 E-value=0.0025 Score=54.92 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
+|.+++|-|+-||||||++++|+--+.. .|.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~ 33 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 33 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence 6999999999999999999999976653 4543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.74 E-value=0.12 Score=45.45 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHc
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
..+++|+|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.0029 Score=54.12 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
|++|+++.|.||+|||||||...++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999999887763
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.68 E-value=0.0027 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.|+||.||||||+.+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.66 E-value=0.0025 Score=52.14 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|+.|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.65 E-value=0.0033 Score=53.93 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.3
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
+++|+++.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999999977443
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.64 E-value=0.0033 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.7
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHH
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKII 137 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l 137 (352)
+++|+++.|.|++|+|||||+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999997543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.61 E-value=0.0034 Score=53.04 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
+++|+++.|.|++|+|||||+--++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999777763
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.57 E-value=0.0028 Score=54.11 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+.|.||+|+|||||+++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999974
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.56 E-value=0.0038 Score=53.56 Aligned_cols=151 Identities=17% Similarity=0.087 Sum_probs=79.8
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcC-CCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGL-LAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl-~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
+++|.++.|.||+|||||||+.-++-- ... ...+.|+.- ..+..+.+....
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~----------------------~~~~~~is~------e~~~~~~~~~~~ 74 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACAN----------------------KERAILFAY------EESRAQLLRNAY 74 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT----------------------TCCEEEEES------SSCHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHh----------------------ccccceeec------cCCHHHHHHHHH
Confidence 789999999999999999998766532 111 012344432 123433332221
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC---CCCHHHH
Q 018638 193 YENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA---GLDPIAS 269 (352)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts---gLD~~~~ 269 (352)
. .+.+..+ +...+.....+..+...... ...-.|..++-. .+|++++.|--++ +.+....
T Consensus 75 ~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~i~~------~~~~~vviDs~~~~~~~~~~~~~ 137 (242)
T d1tf7a2 75 S--WGMDFEE--------MERQNLLKIVCAYPESAGLE-DHLQIIKSEIND------FKPARIAIDSLSALARGVSNNAF 137 (242)
T ss_dssp T--TSCCHHH--------HHHTTSEEECCCCGGGSCHH-HHHHHHHHHHHT------TCCSEEEEECHHHHTSSSCHHHH
T ss_pred H--cCCChHH--------HhhcCceEEEEeecchhhHH-HHHHHHHHHHHh------cCCceeeeecchhhhcCCCHHHH
Confidence 1 1122211 11223222333333333322 222234444443 4799999996543 3455555
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH----------HHHHhhcCEEEEEeC
Q 018638 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH----------STIRRAVDRLIFLYE 318 (352)
Q Consensus 270 ~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl----------~~i~~~aDrv~vL~~ 318 (352)
......+..+.++.. .+++++.|-. ..+..+||-|+.|+.
T Consensus 138 ~~~~~~l~~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 138 RQFVIGVTGYAKQEE---------ITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHHHHHHTT---------CEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHcC---------CeEEEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence 555555555544421 5788887742 234567899988853
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.55 E-value=0.0024 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++++|+.|+|||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999763
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.0032 Score=53.72 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++||+|..||||||..+++.-+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 7899999999999999998743
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.54 E-value=0.0028 Score=51.80 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++++|+.|+|||||++-+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.0026 Score=51.76 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 889999999999999988753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0055 Score=49.79 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|..|+|||||++-+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.0016 Score=60.27 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+.-++||.||.|||||||++.|...+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999985443
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.45 E-value=0.0076 Score=50.80 Aligned_cols=33 Identities=36% Similarity=0.430 Sum_probs=25.8
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
..|+..-+.+. |.-+.|.|+||+|||||.-.+.
T Consensus 3 ~~lH~~~v~~~-g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 3 RSMHGVLVDIY-GLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEEET-TEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHH
Confidence 45666666554 7789999999999999887655
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0032 Score=51.76 Aligned_cols=20 Identities=45% Similarity=0.654 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|+.|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997765
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.40 E-value=0.0038 Score=59.05 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHcCCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
++|+|.+|+|||||+|.|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 89999999999999999999643
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.38 E-value=0.0032 Score=54.19 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCce
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G 146 (352)
.+-+.||.|+||||+.++|+.-+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence 3679999999999999999987765544
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.36 E-value=0.0042 Score=53.66 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
...++.++||+|+||||.+-=|+-.+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999998877776543
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.27 E-value=0.0039 Score=50.52 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++++|+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.27 E-value=0.0021 Score=58.55 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++||.|+|||||||+.+.|.-++
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 89999999999999999988755
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.26 E-value=0.0046 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|-|.-||||||+++.|..-+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0037 Score=50.74 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.0046 Score=51.07 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++|+|+.|+|||||++-+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999988863
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.22 E-value=0.004 Score=53.61 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHcCCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+-+.||.|+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998653
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.0039 Score=50.58 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++++|.+|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987753
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.18 E-value=0.004 Score=54.15 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=19.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHc
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
+-.+++++||+|+||||.+-=|+-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999987655554
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=0.0044 Score=50.76 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++++|+.|+|||||++-+.+=
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987643
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0051 Score=50.17 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=19.7
Q ss_pred EEEEcCCCchHHHHHHHHHcCCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
++|+|+.|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 78999999999999999988643
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.14 E-value=0.0047 Score=53.06 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=23.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPD 144 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~ 144 (352)
..+.|.||.|+||||+++.|+..++..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcc
Confidence 478899999999999999999877543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0043 Score=50.62 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999997654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.11 E-value=0.011 Score=49.79 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=26.4
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
.++..-+.+ .|.-+.|.|+||+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 466666777 68889999999999999987765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.06 E-value=0.0051 Score=53.18 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++||+|...||||||++.|.+-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0051 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999888753
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0046 Score=50.45 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|+.|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.0062 Score=49.80 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=17.6
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999976654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.04 E-value=0.0046 Score=56.23 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=24.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
.-+.++||+|+|||+|.|+|+..+.. --+.+++
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~ 82 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA 82 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHhhcccc--chhcccc
Confidence 34568999999999999999987531 2345554
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.04 E-value=0.0064 Score=50.43 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=26.0
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
..++|.+++|-|+=|||||||.|.++.-+-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 347899999999999999999999986553
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.0047 Score=53.57 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+++++||+|+||||.+-=|+-.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999998776666443
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.02 E-value=0.0052 Score=50.74 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++++|..|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997774
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.97 E-value=0.0032 Score=51.89 Aligned_cols=21 Identities=38% Similarity=0.513 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 377999999999999998854
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.96 E-value=0.0056 Score=49.36 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.0051 Score=49.65 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|..|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.0057 Score=49.63 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|..|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988765
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.0081 Score=49.18 Aligned_cols=22 Identities=50% Similarity=0.767 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.|+|..|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 7899999999999999998754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.86 E-value=0.0062 Score=49.43 Aligned_cols=20 Identities=35% Similarity=0.596 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|..|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998874
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.0058 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.+.|+|++|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999887753
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.0076 Score=53.49 Aligned_cols=24 Identities=46% Similarity=0.736 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.-+.|.||.|||||+|.+.|+..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 347799999999999999999865
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.0067 Score=49.22 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|..|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.0069 Score=49.72 Aligned_cols=20 Identities=45% Similarity=0.652 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++++|..|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.71 E-value=0.0072 Score=51.54 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+-|.||.|+||||+.++++.-
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 578999999999999999864
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.69 E-value=0.0066 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-+.|.||.|||||+|.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 3779999999999999999963
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.017 Score=47.56 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++++|+.|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999997765
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.67 E-value=0.008 Score=54.46 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.66 E-value=0.0063 Score=52.35 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=29.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~ 304 (352)
+.+++|+||.-. |.......+.+.+.+.... ..+|++|++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~-----------~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKN-----------IRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT-----------EEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhccccccccc-----------ccceeeecccc
Confidence 467999999854 7777777766666543221 56899999875
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.65 E-value=0.0074 Score=52.26 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=15.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHc
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.-.+++++||+|+||||.+-=|+-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999998666654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.61 E-value=0.0082 Score=55.17 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+.-++||.||-|||||||+..|...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999864
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.60 E-value=0.0069 Score=50.61 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999997774
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.57 E-value=0.0051 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+.|+|++|+|||||++.+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 377999999999999999875443
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.0071 Score=54.88 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=28.7
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
|.=+.|-+|+..+|+|++|+|||||+..|+.-.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred eecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 344688999999999999999999999998644
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.0082 Score=48.73 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997664
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.0078 Score=49.25 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.0083 Score=49.48 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.46 E-value=0.0088 Score=48.68 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|+.|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.43 E-value=0.0092 Score=50.70 Aligned_cols=44 Identities=14% Similarity=0.307 Sum_probs=29.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHH
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i 306 (352)
+.+++++||. -.+....+..++..|.+.... ..++++|++...+
T Consensus 99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~-----------~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEA-DAMTNAAQNALRRVIERYTKN-----------TRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTG-GGSCHHHHHHHHHHHHHTTTT-----------EEEEEEESCGGGS
T ss_pred CeEEEEEecc-ccchhhHHHHHHHHhhhcccc-----------eeeccccCcHHHh
Confidence 4679999996 467777777777777654322 4567777765543
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.0083 Score=48.90 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.0091 Score=48.52 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998884
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.35 E-value=0.005 Score=56.09 Aligned_cols=26 Identities=42% Similarity=0.622 Sum_probs=23.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
.-+-|+||-|+|||||+|.++++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 45789999999999999999999976
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.34 E-value=0.0097 Score=48.53 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
+.++|..|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998775
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.32 E-value=0.02 Score=47.80 Aligned_cols=32 Identities=38% Similarity=0.430 Sum_probs=24.2
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
.++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 5 SLHGVLVDV-YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 455555554 48889999999999999885554
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.27 E-value=0.0088 Score=53.10 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
..-+-|.||+|+|||+|.+.+++.+
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 3447899999999999999999976
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.27 E-value=0.011 Score=48.34 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=24.5
Q ss_pred EEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 120 VGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
+.|+|..|+|||||++-+..-.-|+.|-.
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 78999999999999999876666777743
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.26 E-value=0.0097 Score=52.43 Aligned_cols=21 Identities=38% Similarity=0.792 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+.+.||.|+|||+|.+.|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 679999999999999999974
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.24 E-value=0.01 Score=48.91 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcC--CCCCce
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL--LAPDKG 146 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl--~~p~~G 146 (352)
.+.|+|.+|+|||||++-+.-. ..|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 3789999999999999988422 357878
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.19 E-value=0.0068 Score=49.54 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=8.6
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|..|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999986665
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.0062 Score=49.81 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.3
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|+.|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.18 E-value=0.0073 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999999765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.011 Score=48.06 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|+.|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999996644
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.01 E-value=0.014 Score=50.08 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 018638 118 EAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++||.|+-||||||+.++|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.012 Score=47.55 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|..|+|||||++-+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999998764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.98 E-value=0.012 Score=47.78 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.+.|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.95 E-value=0.012 Score=51.85 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=22.5
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
..+.| +-|.||.|+|||+|++.++...
T Consensus 36 ~~~~g--iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 36 KPPRG--ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCce--eEEecCCCCCchHHHHHHHHHh
Confidence 33455 7799999999999999999854
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.011 Score=53.08 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-+|+|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999865
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.013 Score=48.47 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|..|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 88999999999999987653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.85 E-value=0.012 Score=55.46 Aligned_cols=27 Identities=37% Similarity=0.434 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.-++.|.||.||||||++..+...+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhh
Confidence 346689999999999999999998755
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.02 Score=50.92 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=30.7
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCceEEEECCEe
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRGRK 154 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~-~p~~G~I~i~G~~ 154 (352)
=|+.|.++-|.||+|||||||+-.++--. ++..--|+++.+.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 46899999999999999999976666443 3433346666553
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.69 E-value=0.016 Score=49.66 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHH-cCCCCCce
Q 018638 119 AVGIIGPSGTGKSTILKIIA-GLLAPDKG 146 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~-Gl~~p~~G 146 (352)
.+.|+|++|+|||||++-+. +-..|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 47899999999999998763 54567766
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.67 E-value=0.012 Score=56.39 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
=+.+|||+|||||-|.|.||+++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999874
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.60 E-value=0.021 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.60 E-value=0.016 Score=47.75 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=17.1
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
+.++|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999975543
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.015 Score=48.26 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=17.4
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|+.|+|||||++-+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999976653
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.56 E-value=0.015 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++++|.-.||||||++.|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999965
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.54 E-value=0.017 Score=51.72 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC-CC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA-PD 144 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~-p~ 144 (352)
.++++|.-.||||||++.|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 478999999999999999999753 54
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.019 Score=49.10 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+++|=|+=||||||+++.|+--+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999997554
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.23 E-value=0.014 Score=52.20 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=29.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceE-EEECCE
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE-VYIRGR 153 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~-I~i~G~ 153 (352)
=++.|.++-|.||+|+|||||+-.++....-..|. |+||.+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE 97 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE 97 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 46899999999999999999976555433323333 455554
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.04 E-value=0.015 Score=51.94 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=25.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
=|+.|.++-|.||+|||||||+-.++...+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 468999999999999999999988876543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.84 E-value=0.024 Score=51.01 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+||||-.-+|||||++.|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 8999999999999999998854
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.49 E-value=0.029 Score=45.76 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHcCC---CCCce
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL---APDKG 146 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~---~p~~G 146 (352)
+.|+|..|+|||||++-+..-. .|+-|
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 6899999999999999886432 35555
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.49 E-value=0.033 Score=50.55 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=24.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~ 151 (352)
.+.++||+|+|||.|.+.|+-.+. .--|.++
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d 84 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG--IELLRFD 84 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CEEEEEE
T ss_pred EEEEECCCcchhHHHHHHHHhhcc--CCeeEec
Confidence 578999999999999999998763 2245554
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.47 E-value=0.032 Score=50.06 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=26.8
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
|.=+.+-+|+..+|+|++|+|||||+..|+.
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 4447899999999999999999999777754
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.25 E-value=0.03 Score=52.06 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=27.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.++++..+.+.||.|+||||+.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 447888999999999999999999999875
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.10 E-value=0.033 Score=49.67 Aligned_cols=20 Identities=30% Similarity=0.707 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 018638 119 AVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~ 138 (352)
-++|+|+.|+|||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 37999999999999999994
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.98 E-value=0.038 Score=49.46 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+||||..-||||||++.|++--
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999753
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.82 E-value=0.031 Score=48.07 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++.|.|.=|||||||++-+..-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999998764
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.58 E-value=0.042 Score=46.59 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
+||+|.-++|||||+..|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999963
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.56 E-value=0.056 Score=45.40 Aligned_cols=24 Identities=29% Similarity=0.735 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
-+||+|.=.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.51 E-value=0.068 Score=47.18 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=26.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC-----------CCCceEEEEC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL-----------APDKGEVYIR 151 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~-----------~p~~G~I~i~ 151 (352)
.+||||-.-+|||||++.|++-- .|.-|.|.+.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence 48999999999999999999653 3445877543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.34 E-value=0.045 Score=49.03 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHH---HcCCCCCceEE
Q 018638 119 AVGIIGPSGTGKSTILKII---AGLLAPDKGEV 148 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l---~Gl~~p~~G~I 148 (352)
-+||+|..|||||||...| +|.... .|+|
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v 39 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEV 39 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-----
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc-ccce
Confidence 4799999999999999998 465543 3444
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.25 E-value=0.051 Score=46.39 Aligned_cols=42 Identities=7% Similarity=0.047 Sum_probs=29.7
Q ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC
Q 018638 251 EPEVLLYDEPTAG-LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 251 ~p~llLLDEPtsg-LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
..++|++|+--.= =++..+..+..++..+.+.| ..+|+++..
T Consensus 97 ~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~----------~~iiits~~ 139 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE----------KQIILASDR 139 (213)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT----------CEEEEEESS
T ss_pred hccchhhhhhhhhcCchHHHHHHHHHHHHHhhcc----------ceEEEecCC
Confidence 3788999987432 34677888888888887776 366666653
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.03 E-value=0.059 Score=46.29 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=30.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHH
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i 306 (352)
+.+++|+||.=. |...++..++..|.+... ...+|++|++.+-+
T Consensus 115 ~~kviiIde~d~-l~~~~q~~Llk~lE~~~~-----------~~~~il~tn~~~~i 158 (239)
T d1njfa_ 115 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPE-----------HVKFLLATTDPQKL 158 (239)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCT-----------TEEEEEEESCGGGS
T ss_pred CCEEEEEECccc-CCHHHHHHHHHHHhcCCC-----------CeEEEEEcCCcccc
Confidence 357999999854 777777666655543211 15789999887654
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.03 E-value=0.048 Score=50.52 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=23.9
Q ss_pred cEEEEEcCCCchHHHHHHH-HHcCCCCCceEEEEC
Q 018638 118 EAVGIIGPSGTGKSTILKI-IAGLLAPDKGEVYIR 151 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~-l~Gl~~p~~G~I~i~ 151 (352)
..+.|+|++|||||++++. |..++....+-|.+|
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4689999999999999864 445444444455554
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.53 E-value=0.066 Score=45.23 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.+.||.|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 47889999999999999998754
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=90.42 E-value=0.055 Score=48.42 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=28.9
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G 146 (352)
|.=+.|-+|+.++|+|++|+|||+|+..++--..-+..
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~ 96 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNV 96 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTC
T ss_pred eccccccCCceEeeccCCCCChHHHHHHHHhhhcccCc
Confidence 44478999999999999999999999765443333333
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=89.35 E-value=0.12 Score=47.26 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=24.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEE
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i 150 (352)
.+.|=|+=|+||||+++.|+.-+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 46788999999999999999877654444433
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.19 E-value=0.094 Score=47.85 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=25.5
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+-+-...++| ++.++||.|+|||.|.+.|++-+
T Consensus 114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 33334566666 55568999999999999999853
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.86 E-value=0.1 Score=46.31 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-+.||||.|+|||++++-++..
T Consensus 41 n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999988854
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.73 E-value=0.098 Score=46.32 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=28.2
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceE
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~ 147 (352)
..++--++.|.||-++|||||+++|+.++ ++-|.
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~ 133 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGC 133 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEE
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhh
Confidence 33666789999999999999999999988 55553
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.51 E-value=0.12 Score=43.86 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-+.||||.|.|||+++.-++..+
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 36799999999999999998754
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.32 E-value=0.11 Score=46.92 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=26.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC-CCceEEEECCE
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRGR 153 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~-p~~G~I~i~G~ 153 (352)
.+.++||+|+|||.|.+.|+-.+- ....-+.++..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~ 90 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 90 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecc
Confidence 567899999999999999998762 23345666643
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.74 E-value=0.13 Score=43.27 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+||+|.-++|||||++.|.+.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7999999999999999998643
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.64 E-value=0.082 Score=47.45 Aligned_cols=30 Identities=30% Similarity=0.279 Sum_probs=25.6
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
|.=+.+-+|+.++|+|+.|+|||||+.-++
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 445789999999999999999999976444
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.45 E-value=0.14 Score=47.33 Aligned_cols=27 Identities=30% Similarity=0.645 Sum_probs=22.0
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++++. +-++||+|+|||-|.|.|+.++
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence 34554 4577999999999999999876
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=87.06 E-value=0.14 Score=46.90 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=25.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~ 151 (352)
.+.|=|+=||||||+++.|+--+......|.+-
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~ 39 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLI 39 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence 478889999999999999998776544444443
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=86.61 E-value=0.14 Score=46.53 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=17.8
Q ss_pred eCCcEEEEEcCCCchHHHHH
Q 018638 115 RHGEAVGIIGPSGTGKSTIL 134 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLl 134 (352)
+.|++..+.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 35899999999999999976
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.45 E-value=0.14 Score=46.82 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.++|=|+=||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 478899999999999999987653
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.12 E-value=0.18 Score=42.95 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=29.6
Q ss_pred HHHHHHHHhccCCCCCCCCcEEE----EeCCCCCCCHHHHHHHHHHHHHHHHc
Q 018638 234 RVALARSIIFDNTKESVEPEVLL----YDEPTAGLDPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llL----LDEPtsgLD~~~~~~l~~ll~~l~~~ 282 (352)
.+.+++++- -+++++ +|.....-|......+.+.+..+...
T Consensus 132 ~l~~~~~~~--------~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~ 176 (224)
T d1jnya3 132 HIILAKTMG--------LDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRS 176 (224)
T ss_dssp HHHHHHHTT--------CTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--------CCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHh
Confidence 566777663 377777 89888888887777777777776543
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=86.05 E-value=0.14 Score=46.56 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=17.1
Q ss_pred CCcEEEEEcCCCchHHHHH
Q 018638 116 HGEAVGIIGPSGTGKSTIL 134 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLl 134 (352)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4889999999999999974
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=84.48 E-value=0.12 Score=39.09 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.8
Q ss_pred EeCCcEEEEEcCCCchHHHHH
Q 018638 114 IRHGEAVGIIGPSGTGKSTIL 134 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLl 134 (352)
+++|+.+.|.+|.|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 467999999999999999543
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.29 E-value=0.21 Score=45.48 Aligned_cols=19 Identities=42% Similarity=0.691 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCchHHHHH
Q 018638 116 HGEAVGIIGPSGTGKSTIL 134 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLl 134 (352)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6788899999999999997
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=83.91 E-value=0.42 Score=43.77 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=17.4
Q ss_pred CCcEEEEEcCCCchHHHHHH
Q 018638 116 HGEAVGIIGPSGTGKSTILK 135 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk 135 (352)
.+.++.|.||-|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 36799999999999999874
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| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=83.88 E-value=0.18 Score=43.72 Aligned_cols=16 Identities=19% Similarity=0.561 Sum_probs=13.3
Q ss_pred EEEEEcCCCchHHHHH
Q 018638 119 AVGIIGPSGTGKSTIL 134 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLl 134 (352)
-+.|+|+-||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3678999999999754
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| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=83.54 E-value=0.21 Score=43.85 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=13.3
Q ss_pred EEEEEcCCCchHHHHH
Q 018638 119 AVGIIGPSGTGKSTIL 134 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLl 134 (352)
.+.|.|+-||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3668899999999765
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| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=83.23 E-value=0.35 Score=38.33 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHH-HHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKST-ILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKST-Llk~l~Gl~ 141 (352)
|.+..|+||=.||||| |++.+-...
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~ 27 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLE 27 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHH
Confidence 6788999999999999 888876543
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| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=83.23 E-value=0.31 Score=41.61 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 018638 120 VGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~ 138 (352)
++++|.-.+|||||+..|.
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999995
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| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.07 E-value=0.38 Score=40.21 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=31.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
.+|+|+||. -.|...++..+++.|.+-... +.+|++|++.+-
T Consensus 80 ~KviIId~a-d~l~~~aqNaLLK~LEEPp~~-----------t~fiLit~~~~~ 121 (198)
T d2gnoa2 80 RKYVIVHDC-ERMTQQAANAFLKALEEPPEY-----------AVIVLNTRRWHY 121 (198)
T ss_dssp SEEEEETTG-GGBCHHHHHHTHHHHHSCCTT-----------EEEEEEESCGGG
T ss_pred CEEEEEeCc-cccchhhhhHHHHHHhCCCCC-----------ceeeeccCChhh
Confidence 689999994 567788888777777653221 678999998763
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| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=82.80 E-value=0.42 Score=41.75 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPD 144 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~ 144 (352)
+-.++|||-.-+|||||+|.|.|-..-.
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~ 139 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNIAK 139 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred ceEEEEEecCccchhhhhhhhhccceEE
Confidence 3459999999999999999999965543
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| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=82.33 E-value=0.23 Score=42.35 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=27.8
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
+++--++.|.||.++|||++...|+.++. |.|
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~---G~v 81 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ---GAV 81 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT---CEE
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhC---CEE
Confidence 47778999999999999999999999873 554
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| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.29 E-value=0.29 Score=44.72 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHH---HcCCC
Q 018638 120 VGIIGPSGTGKSTILKII---AGLLA 142 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l---~Gl~~ 142 (352)
+||+|.-|+|||||+..| +|...
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence 899999999999999999 46553
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| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=81.84 E-value=0.26 Score=37.82 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=22.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~ 282 (352)
+-+++|+||-= .+|..+...+..+++.+...
T Consensus 94 ~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~~~ 124 (136)
T d1a1va1 94 AYDIIICDECH-STDATSILGIGTVLDQAETA 124 (136)
T ss_dssp CCSEEEEETTT-CCSHHHHHHHHHHHHHTTTT
T ss_pred cCCEEEEeccc-ccCHHHHHHHHHHHHHHHHC
Confidence 57899999985 46887776666666655433
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| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=81.67 E-value=0.18 Score=43.81 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=19.9
Q ss_pred EeCCcEEEEEcCCCchHHH--HHHHHH
Q 018638 114 IRHGEAVGIIGPSGTGKST--ILKIIA 138 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKST--Llk~l~ 138 (352)
+.+|+.+.|.+|.|||||+ |..++.
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~ 32 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVR 32 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 4689999999999999997 335443
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| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.85 E-value=0.39 Score=41.42 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=17.4
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 018638 120 VGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~ 138 (352)
++|+|.-++|||||+..|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7899999999999998884
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| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.34 E-value=0.33 Score=45.14 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=16.9
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
..||||.|.|||+++.-++.
T Consensus 46 ~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHH
Confidence 57899999999999876653
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| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.32 E-value=0.45 Score=37.11 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=25.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHH-HcCCCCCce-EEE
Q 018638 115 RHGEAVGIIGPSGTGKSTILKII-AGLLAPDKG-EVY 149 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l-~Gl~~p~~G-~I~ 149 (352)
++|=.+.+.|-+|||||||.+.| .-|++-..| .|+
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vt 40 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYK 40 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEE
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceE
Confidence 45767889999999999999988 455554333 444
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