Citrus Sinensis ID: 018642

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
MKLNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQKGRVD
ccccccccccccccccccEEEccccEEEEEccccccHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc
ccccccccccEEEEcccEEEEEcccEEEEEccHHHcHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHccccEEEEEEEccccccccHHHcccccEEEEHHcHHHHHHHHHHHcccEEEEHHHcccccHHHcEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHccccEEEEccccEEEEccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
mklnwgsmsryflyeedqtldlknpfiLIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVtnetfsktklcfvkppvfeeswKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLyiplmlgsckkvkvtnnemiihggsgnqvYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMeegiipggGVALLHASEeleklpamnigEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLlgqenpdleydpprdeYVDAVKsaivdpplkLIRNELDDAVSYFVSRWCSTEKLQRQKGRVD
MKLNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGfvvtnetfsktklcfvkpPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIihggsgnqvyIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILkvggattaesrkkrkRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQenpdleydpprDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSrwcsteklqrqkgrvd
MKLNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESrkkrkratnalnaakaaMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQKGRVD
****WGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGG*************************EGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQE**********DEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCST***********
MKLNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK****
MKLNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGG***************ALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTE**********
**LNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK****
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MKLNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQKGRVD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query352 2.2.26 [Sep-21-2011]
P29197577 Chaperonin CPN60, mitocho yes no 0.880 0.537 0.470 2e-74
Q05046575 Chaperonin CPN60-2, mitoc N/A no 0.909 0.556 0.456 1e-73
P29185577 Chaperonin CPN60-1, mitoc N/A no 0.920 0.561 0.458 3e-73
Q05045575 Chaperonin CPN60-1, mitoc N/A no 0.909 0.556 0.453 5e-73
Q43298576 Chaperonin CPN60-2, mitoc N/A no 0.920 0.562 0.461 7e-73
Q8L7B5585 Chaperonin CPN60-like 1, no no 0.909 0.547 0.453 4e-71
P35480587 Chaperonin CPN60, mitocho N/A no 0.889 0.533 0.449 5e-68
Q93ZM7572 Chaperonin CPN60-like 2, no no 0.889 0.547 0.421 2e-62
Q4FPA5554 60 kDa chaperonin OS=Pela yes no 0.880 0.559 0.379 1e-52
Q2WAW8552 60 kDa chaperonin OS=Magn yes no 0.866 0.552 0.362 4e-52
>sp|P29197|CH60A_ARATH Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2 Back     alignment and function desciption
 Score =  279 bits (713), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/340 (47%), Positives = 223/340 (65%), Gaps = 30/340 (8%)

Query: 1   MKLNWGSMSRYFLY-EEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
           MKL+ G  S YF+  ++ Q  +L +P ILIHE KI   N   + +      + +RPLL+V
Sbjct: 223 MKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSINSIVKVLEL--ALKRQRPLLIV 280

Query: 60  ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
           + DVE +    ++ N+  +  K+C +K P F E                N KA ++D+A 
Sbjct: 281 SEDVESDALATLILNKLRAGIKVCAIKAPGFGE----------------NRKANLQDLAA 324

Query: 120 LTGGRVVTAASNSLYIPL------MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
           LTGG V+T   + L + L      MLG+CKKV V+ ++ +I  G+G++  IE+RCEQ+  
Sbjct: 325 LTGGEVIT---DELGMNLEKVDLSMLGTCKKVTVSKDDTVILDGAGDKKGIEERCEQIRS 381

Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGI 233
           AIE+STSDY+ + L+ERL  LS  VA+LK+GGA+ AE  +K+ R T+ALNA KAA+EEGI
Sbjct: 382 AIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGI 441

Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLG 292
           +PGGGVALL+A+ ELEKLP  N  +KIGV+++Q+A+K P+YTIAS AG + +V V KLL 
Sbjct: 442 LPGGGVALLYAARELEKLPTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLE 501

Query: 293 QENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
           Q+NPDL YD  + EYVD VK+ I+D PLK+IR  L DA S
Sbjct: 502 QDNPDLGYDAAKGEYVDMVKAGIID-PLKVIRTALVDAAS 540
Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.
Arabidopsis thaliana (taxid: 3702)
>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1 Back     alignment and function description
>sp|P29185|CH61_MAIZE Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2 Back     alignment and function description
>sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1 Back     alignment and function description
>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1 Back     alignment and function description
>sp|Q8L7B5|CH60B_ARATH Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1 Back     alignment and function description
>sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q93ZM7|CH60C_ARATH Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2 Back     alignment and function description
>sp|Q4FPA5|CH60_PELUB 60 kDa chaperonin OS=Pelagibacter ubique (strain HTCC1062) GN=groL PE=3 SV=1 Back     alignment and function description
>sp|Q2WAW8|CH60_MAGSA 60 kDa chaperonin OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=groL PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
225433375 575 PREDICTED: chaperonin CPN60-2, mitochond 0.900 0.551 0.469 5e-74
297835484 577 hypothetical protein ARALYDRAFT_898985 [ 0.880 0.537 0.473 6e-73
115482382 574 Os10g0462900 [Oryza sativa Japonica Grou 0.920 0.564 0.461 7e-73
115450675 577 Os03g0143400 [Oryza sativa Japonica Grou 0.920 0.561 0.461 8e-73
449458874 575 PREDICTED: chaperonin CPN60-2, mitochond 0.909 0.556 0.462 1e-72
110289207 634 Chaperonin CPN60-1, mitochondrial precur 0.920 0.511 0.461 1e-72
15229559 577 chaperonin CPN60 [Arabidopsis thaliana] 0.880 0.537 0.470 1e-72
16221 577 chaperonin hsp60 [Arabidopsis thaliana] 0.880 0.537 0.470 1e-72
255560267 575 chaperonin-60kD, ch60, putative [Ricinus 0.880 0.539 0.470 2e-72
357442731 574 Chaperonin CPN60-like protein [Medicago 0.909 0.557 0.456 4e-72
>gi|225433375|ref|XP_002285608.1| PREDICTED: chaperonin CPN60-2, mitochondrial isoform 1 [Vitis vinifera] gi|297741894|emb|CBI33329.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 164/349 (46%), Positives = 229/349 (65%), Gaps = 32/349 (9%)

Query: 1   MKLNWGSMSRYFLY-EEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
           MKL+ G +S YF+  ++ Q  +L+NP +LIHE KI   NI A         + +RPLL+V
Sbjct: 224 MKLDRGYISPYFITNQKTQKCELENPLVLIHEKKI--SNIHAVVKVLEMALKTQRPLLIV 281

Query: 60  ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
           A DVE E    ++ N+  +  K+C +K P F E                N KA ++D+A 
Sbjct: 282 AEDVESEALATLILNKLRAGIKVCAIKAPGFGE----------------NRKAALQDLAT 325

Query: 120 LTGGRVVTAASNSLYIPL------MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
           LTGG ++T     L + L      MLG+CKKV ++ ++ +I  G+G++  IE+RCEQ+  
Sbjct: 326 LTGGELIT---EELGLNLEKAELDMLGTCKKVTISKDDTVILDGAGDKKAIEERCEQIRS 382

Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGI 233
           AIE+STSDY+ + L+ERL  LS  VA+LK+GGA+ AE  +K+ R T+ALNA KAA+EEGI
Sbjct: 383 AIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVSEKKDRVTDALNATKAAVEEGI 442

Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLG 292
           +PGGGVALL+AS+EL+KLP  N  +KIGV+++Q+A+K P++TIAS AG + + VV KLL 
Sbjct: 443 VPGGGVALLYASKELDKLPTSNFDQKIGVQIIQNALKTPVFTIASNAGVEGAVVVGKLLE 502

Query: 293 QENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCST 341
           Q+NPDL YD  + EYVD VK+ I+D PLK+IR  L DA S  VS   +T
Sbjct: 503 QDNPDLGYDAAKGEYVDMVKAGIID-PLKVIRTALVDAAS--VSSLMTT 548

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297835484|ref|XP_002885624.1| hypothetical protein ARALYDRAFT_898985 [Arabidopsis lyrata subsp. lyrata] gi|297331464|gb|EFH61883.1| hypothetical protein ARALYDRAFT_898985 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|115482382|ref|NP_001064784.1| Os10g0462900 [Oryza sativa Japonica Group] gi|22758324|gb|AAN05528.1| mitochondrial chaperonin-60 [Oryza sativa Japonica Group] gi|113639393|dbj|BAF26698.1| Os10g0462900 [Oryza sativa Japonica Group] gi|218184691|gb|EEC67118.1| hypothetical protein OsI_33923 [Oryza sativa Indica Group] gi|222612963|gb|EEE51095.1| hypothetical protein OsJ_31804 [Oryza sativa Japonica Group] gi|313575773|gb|ADR66966.1| 60 kDa chaperonin [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115450675|ref|NP_001048938.1| Os03g0143400 [Oryza sativa Japonica Group] gi|108706134|gb|ABF93929.1| Chaperonin CPN60-1, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] gi|113547409|dbj|BAF10852.1| Os03g0143400 [Oryza sativa Japonica Group] gi|215704319|dbj|BAG93753.1| unnamed protein product [Oryza sativa Japonica Group] gi|218192069|gb|EEC74496.1| hypothetical protein OsI_09970 [Oryza sativa Indica Group] gi|222624174|gb|EEE58306.1| hypothetical protein OsJ_09368 [Oryza sativa Japonica Group] gi|284431758|gb|ADB84620.1| chaperonin [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449458874|ref|XP_004147171.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like [Cucumis sativus] gi|449498579|ref|XP_004160576.1| PREDICTED: chaperonin CPN60-2, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|110289207|gb|AAP54159.2| Chaperonin CPN60-1, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|15229559|ref|NP_189041.1| chaperonin CPN60 [Arabidopsis thaliana] gi|12644189|sp|P29197.2|CH60A_ARATH RecName: Full=Chaperonin CPN60, mitochondrial; AltName: Full=HSP60; Flags: Precursor gi|9294668|dbj|BAB03017.1| chaperonin hsp60, mitochondrial precursor (HSP60) [Arabidopsis thaliana] gi|20466256|gb|AAM20445.1| mitochondrial chaperonin hsp60 [Arabidopsis thaliana] gi|34098917|gb|AAQ56841.1| At3g23990 [Arabidopsis thaliana] gi|332643321|gb|AEE76842.1| chaperonin CPN60 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|16221|emb|CAA77646.1| chaperonin hsp60 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255560267|ref|XP_002521151.1| chaperonin-60kD, ch60, putative [Ricinus communis] gi|223539720|gb|EEF41302.1| chaperonin-60kD, ch60, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357442731|ref|XP_003591643.1| Chaperonin CPN60-like protein [Medicago truncatula] gi|92882357|gb|ABE86688.1| GroEL-like chaperone, ATPase [Medicago truncatula] gi|355480691|gb|AES61894.1| Chaperonin CPN60-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
TAIR|locus:2076081577 HSP60 "heat shock protein 60" 0.889 0.542 0.448 8.8e-63
TAIR|locus:2046590585 HSP60-2 "heat shock protein 60 0.889 0.535 0.430 3.1e-60
TAIR|locus:2087959572 HSP60-3A "heat shock protein 6 0.886 0.545 0.408 1e-52
GENEDB_PFALCIPARUM|PF10_0153580 PF10_0153 "hsp60" [Plasmodium 0.914 0.555 0.339 4.4e-45
UNIPROTKB|Q8IJN9580 PF10_0153 "Heat shock protein 0.914 0.555 0.339 4.4e-45
TIGR_CMR|CBU_1718552 CBU_1718 "chaperonin, 60 kDa" 0.883 0.563 0.345 1.6e-40
SGD|S000004249572 HSP60 "Tetradecameric mitochon 0.914 0.562 0.328 1.8e-39
UNIPROTKB|G4NAR5589 MGG_03165 "Heat shock protein 0.875 0.522 0.339 3.7e-39
ASPGD|ASPL0000003680588 AN6089 [Emericella nidulans (t 0.883 0.528 0.333 1.6e-38
WB|WBGene00002025568 hsp-60 [Caenorhabditis elegans 0.914 0.566 0.316 5.5e-38
TAIR|locus:2076081 HSP60 "heat shock protein 60" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 151/337 (44%), Positives = 211/337 (62%)

Query:     1 MKLNWGSMSRYFLY-EEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
             MKL+ G  S YF+  ++ Q  +L +P ILIHE KI   N   + +  ++    +RPLL+V
Sbjct:   223 MKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSINSIVKVL-ELALKR-QRPLLIV 280

Query:    60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
             + DVE +    ++ N+  +  K+C +K P F        GEN         KA ++D+A 
Sbjct:   281 SEDVESDALATLILNKLRAGIKVCAIKAPGF--------GENR--------KANLQDLAA 324

Query:   120 LTGGRVVT--AASNSLYIPL-MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIE 176
             LTGG V+T     N   + L MLG+CKKV V+ ++ +I  G+G++  IE+RCEQ+  AIE
Sbjct:   325 LTGGEVITDELGMNLEKVDLSMLGTCKKVTVSKDDTVILDGAGDKKGIEERCEQIRSAIE 384

Query:   177 MSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPG 236
             +STSDY+ + L+ERL  LS  VA+LK+GGA+ AE                  +EEGI+PG
Sbjct:   385 LSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGILPG 444

Query:   237 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLGQEN 295
             GGVALL+A+ ELEKLP  N  +KIGV+++Q+A+K P+YTIAS AG + +V V KLL Q+N
Sbjct:   445 GGVALLYAARELEKLPTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLEQDN 504

Query:   296 PDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
             PDL YD  + EYVD VK+ I+DP LK+IR  L DA S
Sbjct:   505 PDLGYDAAKGEYVDMVKAGIIDP-LKVIRTALVDAAS 540
GO:0005524 "ATP binding" evidence=IEA;IDA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006457 "protein folding" evidence=IEA;RCA
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051131 "chaperone-mediated protein complex assembly" evidence=TAS
GO:0007005 "mitochondrion organization" evidence=TAS
GO:0009408 "response to heat" evidence=IEP;RCA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005759 "mitochondrial matrix" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2046590 HSP60-2 "heat shock protein 60-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087959 HSP60-3A "heat shock protein 60-3A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0153 PF10_0153 "hsp60" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IJN9 PF10_0153 "Heat shock protein 60" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
SGD|S000004249 HSP60 "Tetradecameric mitochondrial chaperonin" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|G4NAR5 MGG_03165 "Heat shock protein 60" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000003680 AN6089 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00002025 hsp-60 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
OsI_33923
Os10g0462900 (574 aa)
(Oryza sativa Indica)
Predicted Functional Partners:
OsI_27057
Os07g0641700 (98 aa)
•  •• • 0.903
tufM
Os03g0851100 ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site [...] (453 aa)
  ••  • 0.664
OsI_16800
Os04g0538100 (774 aa)
  ••  • 0.639
OsI_01632
Os01g0321300 (978 aa)
      • 0.625
BGIOSIBSE038426
annotation not avaliable (417 aa)
      • 0.609
OsI_31514
Os09g0438700 (245 aa)
• • • • 0.605
tufA
Translational elongation factor Tu (Putative uncharacterized protein); This protein promotes th [...] (546 aa)
  ••  • 0.602
OsI_09178
Os02g0781400 (255 aa)
• •   • 0.593
Fe-SOD
Os06g0143000 ; Destroys radicals which are normally produced within the cells and which are tox [...] (255 aa)
      • 0.563
OsI_09127
Os03g0113700 (676 aa)
  ••  • 0.556

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 6e-87
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 2e-83
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 2e-73
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 2e-70
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 4e-67
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 1e-64
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-60
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 3e-58
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 3e-52
CHL00093529 CHL00093, groEL, chaperonin GroEL 7e-52
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 6e-40
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 6e-29
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 4e-24
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-22
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 2e-06
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  270 bits (694), Expect = 6e-87
 Identities = 137/339 (40%), Positives = 201/339 (59%), Gaps = 29/339 (8%)

Query: 1   MKLNWGSMSRYFLY-EEDQTLDLKNPFILIHENKILDKNIFAQAIGAI--SCNEVKRPLL 57
           M+ + G +S YF+   E   ++L+NP+IL+ + KI   +I  Q +  I     +  RPLL
Sbjct: 190 MQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI--SSI--QELLPILELVAKAGRPLL 245

Query: 58  VVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDI 117
           ++A DVE E    +V N+     K+C VK P F        G+          KA++ DI
Sbjct: 246 IIAEDVEGEALATLVVNKLRGGLKVCAVKAPGF--------GDRR--------KAMLEDI 289

Query: 118 AILTGGRVVTAASNSLYIPL---MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDA 174
           AILTGG V++         +    LG  KKV VT ++  I GG+G++  I+ R  Q+   
Sbjct: 290 AILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQ 349

Query: 175 IEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGII 234
           IE +TSDY+ + L+ERL  LS  VA++KVGGAT  E ++K+ R  +ALNA +AA+EEGI+
Sbjct: 350 IEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIV 409

Query: 235 PGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ 293
           PGGGVALL AS  L+KL A+N  EK+G+++++ A++ PL  IA  AG   S VVEK+L  
Sbjct: 410 PGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLES 469

Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
            +    YD    EYVD +++ I+D P K++R+ L +A S
Sbjct: 470 PD-GFGYDAATGEYVDMIEAGIID-PTKVVRSALQNAAS 506

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 352
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
CHL00093529 groEL chaperonin GroEL 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.87
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.85
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 97.87
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=7.8e-74  Score=591.67  Aligned_cols=328  Identities=37%  Similarity=0.580  Sum_probs=315.9

Q ss_pred             CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642            1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK   79 (352)
Q Consensus         1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~   79 (352)
                      |.|++||++|||+++ ++|+.+++||+||++|++|+++++++|+|+.  +.+.++||||++++|+++||++|+.||+++.
T Consensus       193 ~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~--i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~  270 (545)
T PRK12852        193 MKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEA--VVQSGKPLLIIAEDVEGEALATLVVNRLRGG  270 (545)
T ss_pred             EEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHH--HHHhCcCEEEECCCCcHHHHHHHHHhccccc
Confidence            579999999999999 8999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEEc
Q 018642           80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG  156 (352)
Q Consensus        80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i~  156 (352)
                      +++++||+|+||+                +|+++|+|||++|||+++++..|   +++++++||+|++|+++++++++++
T Consensus       271 ~~i~av~~~~~~~----------------~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~  334 (545)
T PRK12852        271 LKVAAVKAPGFGD----------------RRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVN  334 (545)
T ss_pred             ceEEEEecCCccc----------------chHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEe
Confidence            9999999999999                99999999999999999995322   7888899999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 018642          157 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG  236 (352)
Q Consensus       157 ~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVpG  236 (352)
                      +++++..+..|+++|+++++.+.+.|++++|+||+++|+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||
T Consensus       335 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpG  414 (545)
T PRK12852        335 GAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPG  414 (545)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhhCCc
Q 018642          237 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI  315 (352)
Q Consensus       237 GGaael~~s~~L~~~~~~~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~~GI  315 (352)
                      ||++|+++|+.|++++..++++|+|+++|++||++||++||+|||+|+. ++++|++.+++++|||+.+|+++||++.||
T Consensus       415 GGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI  494 (545)
T PRK12852        415 GGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGI  494 (545)
T ss_pred             chHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcC
Confidence            9999999999999987667889999999999999999999999999999 999998877778999999999999999999


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642          316 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ  347 (352)
Q Consensus       316 iDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~  347 (352)
                      ||| +.||+++|++|+++|++||.+|++|...
T Consensus       495 ~Dp-~~vk~~al~~A~e~a~~iL~id~iI~~~  525 (545)
T PRK12852        495 IDP-AKVVRTALQDAASVAGLLVTTEAMVAEL  525 (545)
T ss_pred             CcC-hHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence            999 9999999999999999999999988754

>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 5e-39
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 6e-34
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 7e-34
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 8e-34
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 1e-33
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-33
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-33
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-33
1ss8_A524 Groel Length = 524 1e-33
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 2e-33
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 2e-33
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 2e-33
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 2e-33
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 2e-33
1oel_A547 Conformational Variability In The Refined Structure 2e-33
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 2e-33
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 7e-31
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 9e-31
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 2e-17
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 2e-17
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 3e-17
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 1e-16
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 2e-15
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 1e-14
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 3e-10
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 1e-08
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 3e-07
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure 
Iteration: 1

 Score =  158 bits (399), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 174/340 (51%), Gaps = 30/340 (8%)
Query: 1   MKLNWGSMSRYFLYEEDQTL-DLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
           M+ + G +S YF+   D+ + +L++ +IL+HE K+         +   S  + ++PLL+V
Sbjct: 193 MQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLE--SVIQSQKPLLIV 250
Query: 60  ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
           A DVE E    +V N+     K+  VK P F +  KA                +++DIAI
Sbjct: 251 AEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKA----------------MLQDIAI 294
Query: 120 LTGGRVVTAASNSLYIPL------MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
           LTGG+V+   S  L + L      MLG  KKV +  +   I  G+G +  IE R  Q+  
Sbjct: 295 LTGGQVI---SEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQ 351
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
            IE +TSDY+ + L+ER+  L+  VA+++VGG T  E                  ++EGI
Sbjct: 352 QIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGI 411
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLG 292
           + GGGVAL+  ++ LE L   N  +  G+ +++ A++ P+  IA  AG   +VV  K+  
Sbjct: 412 VVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRE 471
Query: 293 QENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
             +    ++   +EY D  K  ++DP  K++R  L+DA S
Sbjct: 472 SSDKAFGFNAQTEEYGDMFKFGVIDPA-KVVRTALEDAAS 510
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 2e-70
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 4e-68
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 4e-66
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 4e-66
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 6e-28
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 7e-28
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 2e-15
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
 Score =  228 bits (583), Expect = 2e-70
 Identities = 116/342 (33%), Positives = 190/342 (55%), Gaps = 34/342 (9%)

Query: 1   MKLNWGSMSRYFLYEED-QTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVK--RPLL 57
           M+ + G +S YF+   D    +L++ +IL+HE K+   ++  Q +  +  + ++  +PLL
Sbjct: 193 MQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKL--SSL--QPMVPLLESVIQSQKPLL 248

Query: 58  VVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDI 117
           +VA DVE E    +V N+     K+  VK P F        G+          KA+++DI
Sbjct: 249 IVAEDVEGEALATLVVNKLRGGLKIAAVKAPGF--------GDRR--------KAMLQDI 292

Query: 118 AILTGGRVVTAASNSLYIPL------MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQL 171
           AILTGG+V+   S  L + L      MLG  KKV +  +   I  G+G +  IE R  Q+
Sbjct: 293 AILTGGQVI---SEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQI 349

Query: 172 SDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEE 231
              IE +TSDY+ + L+ER+  L+  VA+++VGG T  E ++++ R  +ALNA +AA++E
Sbjct: 350 RQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQE 409

Query: 232 GIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVV-EKL 290
           GI+ GGGVAL+  ++ LE L   N  +  G+ +++ A++ P+  IA  AG   +VV  K+
Sbjct: 410 GIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKV 469

Query: 291 LGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
               +    ++   +EY D  K  ++D P K++R  L+DA S
Sbjct: 470 RESSDKAFGFNAQTEEYGDMFKFGVID-PAKVVRTALEDAAS 510
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.79
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.68
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
Probab=100.00  E-value=3.1e-80  Score=636.26  Aligned_cols=326  Identities=33%  Similarity=0.496  Sum_probs=311.4

Q ss_pred             CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642            1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK   79 (352)
Q Consensus         1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~   79 (352)
                      |+||+||+||||+|+ ++|+.+++||+||++|++|+++++++|++++  +.+.|+||||++++|+++||++|+.|+++|.
T Consensus       191 m~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kIs~~~~l~~~le~--I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~  268 (546)
T 3rtk_A          191 MRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEK--VIGAGKPLLIIAEDVEGEALSTLVVNKIRGT  268 (546)
T ss_dssp             EEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEECCSTTTHHHHHH--HHTTTCCEEEEESEECHHHHHHHHHHHHHSS
T ss_pred             EEEcCCccCcccccCcccCeeEecccEEEEECCccCCHHHHHHHHHH--HHhcCCCEEEEcCCCCHHHHHHHHHhCCCCc
Confidence            689999999999999 8999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEEc
Q 018642           80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG  156 (352)
Q Consensus        80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i~  156 (352)
                      +++++||+|+|++                .|+++|+|||++|||+++++..|   +++++++||+|++|++++++|+++.
T Consensus       269 ~~v~aVk~~~~~~----------------~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~i~~d~~~~i~  332 (546)
T 3rtk_A          269 FKSVAVKAPGFGD----------------RRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVE  332 (546)
T ss_dssp             CCEEEEECSSCHH----------------HHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEEECSSCEEEEE
T ss_pred             eEEEEeccccccc----------------cchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEEEcCCeEEEEc
Confidence            9999999999999                99999999999999999996543   8899999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 018642          157 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG  236 (352)
Q Consensus       157 ~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVpG  236 (352)
                      +|++++.+..||++|+++++.++++|++++|+||+++|+|++|||+|||+|+.+++|+||+++||||++|+++++|+|||
T Consensus       333 g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~giVpG  412 (546)
T 3rtk_A          333 GAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAG  412 (546)
T ss_dssp             ECSCHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHCEEET
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhhCCc
Q 018642          237 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI  315 (352)
Q Consensus       237 GGaael~~s~~L~~~~~~~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~~GI  315 (352)
                      ||++|+++|.+|++++ .++++|+|+++|++||++||++||+|||+|+. ++++|++. ..++|||+.+|+++||++.||
T Consensus       413 GGa~e~~~s~~L~~~~-~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~-~~~~G~d~~~g~~~Dm~~~gI  490 (546)
T 3rtk_A          413 GGVTLLQAAPTLDELK-LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNL-PAGHGLNAQTGVYEDLLAAGV  490 (546)
T ss_dssp             TTHHHHTTGGGSTTSC-CCTTHHHHHHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHHS-CTTEECCSSSCCCEETTTTTC
T ss_pred             CcHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh-cCCEeEcCCCCcEeeHHHcCC
Confidence            9999999999999987 78999999999999999999999999999999 99999986 356999999999999999999


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642          316 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ  347 (352)
Q Consensus       316 iDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~  347 (352)
                      ||| ++||+++|++|+++|++||.+|++|...
T Consensus       491 ~dp-~~vk~~al~~A~e~A~~iL~id~iI~~~  521 (546)
T 3rtk_A          491 ADP-VKVTRSALQNAASIAGLFLTTEAVVADK  521 (546)
T ss_dssp             EEE-HHHHHHHHHHHHHHHHHHHHCC------
T ss_pred             Eec-HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999 9999999999999999999999998754
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 352
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 2e-31
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 3e-30
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 9e-30
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 2e-18
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 4e-14
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 6e-11
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 2e-09
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 3e-07
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-05
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 2e-04
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 3e-04
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 0.003
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

 Score =  115 bits (289), Expect = 2e-31
 Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 22/202 (10%)

Query: 1   MKLNWGSMSRYFLY-EEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
           M+ + G +S YF+   E   ++L++PFIL+ + KI +       + A    +  +PLL++
Sbjct: 10  MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEA--VAKAGKPLLII 67

Query: 60  ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
           A DVE E    +V N      K+  VK P F +                  KA+++DIA 
Sbjct: 68  AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGD----------------RRKAMLQDIAT 111

Query: 120 LTGGRVVTAASNSLYIPL---MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIE 176
           LTGG V++              LG  K+V +  +   I  G G +  I+ R  Q+   IE
Sbjct: 112 LTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIE 171

Query: 177 MSTSDYEIKLLEERLQMLSSRV 198
            +TSDY+ + L+ER+  L+  V
Sbjct: 172 EATSDYDREKLQERVAKLAGGV 193
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 100.0
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.95
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.93
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.93
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.92
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.9
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.85
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.81
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.69
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.67
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.66
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.65
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 97.92
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 97.83
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 97.43
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 89.69
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 89.14
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 88.4
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-48  Score=350.27  Aligned_cols=180  Identities=33%  Similarity=0.529  Sum_probs=175.7

Q ss_pred             CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642            1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK   79 (352)
Q Consensus         1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~   79 (352)
                      |+||+||+||||+|+ ++|+++|+||+||++|++|++.++++|+|+.  +.+.++||||||+||+++||++|+.|+++|.
T Consensus        10 ~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~--~~~~~~pLlIIA~di~~~aL~~Lv~N~~kg~   87 (193)
T d1kida_          10 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEA--VAKAGKPLLIIAEDVEGEALATLVVNTMRGI   87 (193)
T ss_dssp             EEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHH--HHHHTCCEEEEESEECHHHHHHHHHHHHTTS
T ss_pred             eeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHH--HHhhCCcEEEEeccccHHHHHHHHHhhhccC
Confidence            789999999999999 9999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEEc
Q 018642           80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG  156 (352)
Q Consensus        80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i~  156 (352)
                      ++|||||+|+||+                .|++.|+|||.+|||+++++..|   ++++.++||+|++|++++++|++++
T Consensus        88 l~v~aVkaPgfG~----------------~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~  151 (193)
T d1kida_          88 VKVAAVKAPGFGD----------------RRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIID  151 (193)
T ss_dssp             CCEEEEECCSCHH----------------HHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             cceeeccCCCcCh----------------hHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEc
Confidence            9999999999999                99999999999999999999876   7888899999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCce
Q 018642          157 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRV  198 (352)
Q Consensus       157 ~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~  198 (352)
                      +.++++.|++|+++|+.+++.+.++|++++|++||++|+||+
T Consensus       152 g~g~~~~I~~Ri~~Lk~~l~~~~~~~~~e~L~eRlakLsGGV  193 (193)
T d1kida_         152 GVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGV  193 (193)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999975
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure