Citrus Sinensis ID: 018643

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKGSFDKMLADANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQSCGEEENS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mgtgeentsaktaktasstqeipttpsyadwsssmqafygagatpppffastvasptphpylwgsqhplmppygtpvpyqaiyppggvyahpsmattptaaptntepegkgpeakdrasakkskgtpggkagEIVKatsgsgndgvsqsaesgsdgssdasdengnqqefargkkgsfDKMLADAntenntaeavpgsvpgkpvvsmpatnlnigmdlwntspaaagaakmrtnpsgaspavapagimpdqwIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTsennsikedlsrlcgpeavanleqsnptqscgeeens
Flexible Loop (DISEMBL)
mgtgeentsaktaktasstqeipTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAaptntepegkgpeakdrasakkskgtpggkageivkatsgsgndgvSQSAESgsdgssdasdenGNQQEFARGKKGSFDKMLADANTEnntaeavpgsvpgkpvVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGASPAVAPAGIMPDQWIQDERELKrqkrkqsnresarrsrlrkqaecEELQARvetlsnenrnLRDELQRLSEECEKLtsennsikedlSRLCGPEAVAnleqsnptqscgeeens
Low Complexity Region (SEG)
MGTGEENtsaktaktasstQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMattptaaptntepeGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGNDGVSQsaesgsdgssdasdengnQQEFARGKKGSFDKMLADantenntaeavpgsvpgkpvvsmpATNLNIGMDLWNTSPAAAGAAKMRTNpsgaspavapagIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQSCGEEENS
Disordered region (IsUnstruct)
************************************AFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYA*************************************************************************************************************************LNIGMDLW*************************************************************************************************************************************
Disordered Region (DISOPRED)
******************************WSSSMQAFYGAGATPP*FFA*****PTPHPYLWGSQHPLMPPYGTPVPY**********************************************************************************************************************************************************************************************************ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED****************************
Disordered Region (DISEMBL)
************************TPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATT*********************************AGEIVKATS*****************************EFARGKKGSFDKMLADANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGASPAVAPAGIMPDQWIQDER***************************ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL***************
Disordered Region (DISPRO)
**********************PTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPT*****************************************************************************************************VSMPA***NI***************************************************************RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKGSFDKMLADANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGASPAVAPAGIMPDQWIQDERELKRQKRKQSNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSRLCGPEAVANLEQSNPTQSCGEEENS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
P42774	315	G-box-binding factor 1 OS	yes	no	0.863	0.965	0.602	1e-101
Q99091	296	Light-inducible protein C	N/A	no	0.798	0.949	0.414	1e-53
Q99089	411	Common plant regulatory f	N/A	no	0.786	0.673	0.375	2e-42
P23922	349	Transcription factor HBP-	N/A	no	0.823	0.830	0.389	3e-32
P42776	382	G-box-binding factor 3 OS	no	no	0.758	0.698	0.341	5e-32
Q99142	265	Transcriptional activator	N/A	no	0.642	0.852	0.358	1e-23
P25032	354	DNA-binding protein EMBP-	N/A	no	0.323	0.322	0.450	3e-19
P42775	360	G-box-binding factor 2 OS	no	no	0.215	0.211	0.564	7e-17
O35451	699	Cyclic AMP-dependent tran	yes	no	0.286	0.144	0.336	5e-06
Q54Y73	834	Probable basic-leucine zi	yes	no	0.181	0.076	0.359	8e-06

>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2

 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/340 (60%), Positives = 240/340 (70%), Gaps = 36/340 (10%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MGT E+    KT K  SS QE+P TP Y DW +SMQA+YG G TP PFF S V SP+PHP
Sbjct: 1   MGTSEDKMPFKTTKPTSSAQEVPPTP-YPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHP 59

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           Y+WG+QH +MPPYGTPVPY A+YPPG VYAHPSM   P + PTN EP      AKD+AS 
Sbjct: 60  YMWGAQHHMMPPYGTPVPYPAMYPPGAVYAHPSMPMPPNSGPTNKEP------AKDQASG 113

Query: 121 KKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKGSFDK 180
           KKSKG    KA    KA SGSGNDG S S ES + GSSD +DEN NQQE    +K SF +
Sbjct: 114 KKSKGNSKKKAEGGDKALSGSGNDGASHSDESVTAGSSDENDENANQQEQGSIRKPSFGQ 173

Query: 181 MLADANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGASP 240
           MLADA++++ T E + GSVP KPV   P TNLNIGMDLW++                   
Sbjct: 174 MLADASSQSTTGE-IQGSVPMKPVA--PGTNLNIGMDLWSSQ------------------ 212

Query: 241 AVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNL 300
               AG+     ++DERELKRQKRKQSNRESARRSRLRKQAECE+LQ RVE+LSNEN++L
Sbjct: 213 ----AGVP----VKDERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSL 264

Query: 301 RDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340
           RDELQRLS EC+KL SENNSI+++L R+ G EAVANLEQ+
Sbjct: 265 RDELQRLSSECDKLKSENNSIQDELQRVLGAEAVANLEQN 304

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Arabidopsis thaliana (taxid: 3702)

>sp|Q99091|CPRF3_PETCR Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/352 (41%), Positives = 191/352 (54%), Gaps = 71/352 (20%)

Query: 1   MGTGEENTSAKTAKTASSTQEIP-TTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPH 59
           M  GEE T  K  K ASS +E P TT  + D  SSMQA Y  GA P  F+ASTV SP+PH
Sbjct: 1   MSDGEEGTPMKHPKPASSVEEAPITTTPFPDLLSSMQA-YYGGAAPAAFYASTVGSPSPH 59

Query: 60  PYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRAS 119
           PY+W +QH  + PYG P+ Y A++ PGG++ HP + T P  APT+ E   K  + K R S
Sbjct: 60  PYMWRNQHRFILPYGIPMQYPALFLPGGIFTHPIVPTDPNLAPTSGEVGRKISDEKGRTS 119

Query: 120 AKKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKGSFD 179
           AKKS G             SGS +  V + AE+    SS  +D                 
Sbjct: 120 AKKSIGV------------SGSTSFAVDKGAENQKAASSSDND----------------- 150

Query: 180 KMLADANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNP-SGA 238
                                       P+ +   G+D         G+ ++R+NP   A
Sbjct: 151 ---------------------------CPSLSSENGVD---------GSLEVRSNPLDVA 174

Query: 239 SP--AVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNE 296
           +P   V   G++PDQ + DERELKRQ+RKQSNRESARRSRLRKQA+ +ELQ R++ LS E
Sbjct: 175 APGAIVVHDGMLPDQRVNDERELKRQRRKQSNRESARRSRLRKQAKSDELQERLDNLSKE 234

Query: 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQSCGE 348
           NR LR  LQR+SE C ++TSEN+SIKE+L R  GP+ +  L + N  ++ GE
Sbjct: 235 NRILRKNLQRISEACAEVTSENHSIKEELLRNYGPDGLTRLPR-NLQEAAGE 285

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|Q99089|CPRF1_PETCR Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 176/322 (54%), Gaps = 45/322 (13%)

Query: 28  YADWSSSMQAFYGAGATPPPFFASTVAS-PTPHPYLWGSQHPLMPPYGTPVPYQAIYPPG 86
           Y DW++ MQA+YG     PP+F   VAS  +PHPY+WG   P+MPPYG  VPY A+Y  G
Sbjct: 32  YPDWAA-MQAYYGPRVALPPYFNPAVASGQSPHPYMWGPPQPVMPPYG--VPYAALYAHG 88

Query: 87  GVYAHPSMATTPTAA-PTNTEPEGKGPEAKDRASAKKSKG-------TPGGKAGEIVKAT 138
           GVYAHP +   P AA P + +   K     +    KK KG          GKA     ++
Sbjct: 89  GVYAHPGV---PLAASPMSMDTHAKSSGTNEHGLIKKLKGHDDLAMSIGNGKA----DSS 141

Query: 139 SGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKGSFD--KMLADANTENNTA---- 192
            G     +SQS E+  +GSSD S+EN  +      K+G  +   M+ +   E  ++    
Sbjct: 142 EGEMERTLSQSKET--EGSSDGSNENSKRAAVNGRKRGRDEAPNMIGEVKIETQSSVIPS 199

Query: 193 -----EAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNP---SGASPA--V 242
                E + G     P+V+       +       SP+   + +++ +P   +  SPA   
Sbjct: 200 PRAKSEKLLGITVATPMVAGKVVGTVV-------SPSMTSSLELKDSPKEHAVNSPAGGQ 252

Query: 243 APAGIMP-DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR 301
            P+ +MP D W+ ++R+LKR++RKQSNRESARRSRLRKQAE EEL  +V++L+ EN  L+
Sbjct: 253 QPSTMMPNDSWLHNDRDLKRERRKQSNRESARRSRLRKQAEAEELAIKVDSLTAENMALK 312

Query: 302 DELQRLSEECEKLTSENNSIKE 323
            E+ RL+   EKLT++N+ + E
Sbjct: 313 AEINRLTLTAEKLTNDNSRLLE 334

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 176/354 (49%), Gaps = 64/354 (18%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTT-----PSYADWSSSMQAFYGAGATPPP-FFASTVA 54
           MG+ + +T +K +K     Q   TT     P Y +W      F G  A PP  FF   VA
Sbjct: 1   MGSNDPSTPSKASKPPEQEQPPATTSGTTAPVYPEWP----GFQGYPAMPPHGFFPPPVA 56

Query: 55  SPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEA 114
           +   HPY+WG QH ++PPYGTP P   +YPPG VYAHP   T P   P +   +  G   
Sbjct: 57  AGQAHPYMWGPQH-MVPPYGTPPPPYMMYPPGTVYAHP---TAPGVHPFHYPMQTNGNLE 112

Query: 115 KDRASAKKSKGTPGGKAGEIVKATSGSGNDGVSQS-------------AESGSDGSSDAS 161
              A              E  K TSG   +GV+ +             A S +D  S  +
Sbjct: 113 PAGAQGAAPGAAETNGKNEPGK-TSGPSANGVTSNSESGSDSESEGSDANSQNDSHSKEN 171

Query: 162 D--ENGNQQEFAR--GKKGSFDKMLADANTENNTAEAVPGSVPGKPVVSMPATNLNIGMD 217
           D  ENG+ Q         G+F+K +     ++       G+V G   V+ PATNLNIGMD
Sbjct: 172 DVNENGSAQNGVSHSSSHGTFNKPMPLVPVQS-------GAVIG---VAGPATNLNIGMD 221

Query: 218 LWNTSPAAAGAAKMRTNPSGASPAVAPAGIMP------DQWIQDERELKRQKRKQSNRES 271
            W  +              G+SP  A  G +P      +QW  DERELK+QKRK SNRES
Sbjct: 222 YWGAT--------------GSSPVPAMRGKVPSGSARGEQW--DERELKKQKRKLSNRES 265

Query: 272 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325
           ARRSRLRKQAECEEL  R E L +EN +LR EL R+ +E E+L S+N S+K  L
Sbjct: 266 ARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEELLSKNTSLKAKL 319

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P42776|GBF3_ARATH G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2

 Score =  138 bits (348), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 168/328 (51%), Gaps = 61/328 (18%)

Query: 28  YADWSSSMQAFYGAGATPPPFFASTVASPT--PHPYLWGSQHPLMPPYGTPVPYQAIYPP 85
           Y DW++ MQA+YG     PP++ S +A+    P PY+W  QH +M PYG   PY A+YP 
Sbjct: 30  YPDWAA-MQAYYGPRVAMPPYYNSAMAASGHPPPPYMWNPQH-MMSPYG--APYAAVYPH 85

Query: 86  GG-VYAHPSM----------------------ATTPTAAPTNTEPEGKGPEAK--DRASA 120
           GG VYAHP +                        TPT +  NT+  G   + K  D  + 
Sbjct: 86  GGGVYAHPGIPMGSLPQGQKDPPLTTPGTLLSIDTPTKSTGNTD-NGLMKKLKEFDGLAM 144

Query: 121 KKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKGS--- 177
               G P   A E  ++ + S  DG    +  GSDG++  +DE     +  R ++G+   
Sbjct: 145 SLGNGNPENGADEHKRSRNSSETDG----STDGSDGNTTGADE----PKLKRSREGTPTK 196

Query: 178 FDKMLADANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSG 237
             K L  A++ ++ + +   +  G  ++      L+ G+   N++P  + +  M      
Sbjct: 197 DGKQLVQASSFHSVSPSSGDT--GVKLIQGSGAILSPGVSA-NSNPFMSQSLAM------ 247

Query: 238 ASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNEN 297
                    + P+ W+Q+ERELKR++RKQSNRESARRSRLRKQAE EEL  +VE L+ EN
Sbjct: 248 ---------VPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAEN 298

Query: 298 RNLRDELQRLSEECEKLTSENNSIKEDL 325
             LR EL +L+E+ +KL   N ++ + L
Sbjct: 299 MALRSELNQLNEKSDKLRGANATLLDKL 326

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|Q99142|TAF1_TOBAC Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/273 (35%), Positives = 134/273 (49%), Gaps = 47/273 (17%)

Query: 86  GGVYAHPS-----------MATTPTA------APTNTEPEGKGPEAKDRASAKKSKGTPG 128
           GGVYAHP            MAT+P        A  + +   K  E  DR     S G   
Sbjct: 3   GGVYAHPGVPIGSHPPGHGMATSPAVSQAMDGASLSLDASAKSSENSDRGLLAMSLGN-- 60

Query: 129 GKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENG---NQQEFARGK----------K 175
           G A  I     G  + G SQS ++  + S+D SD NG   +++   R +          K
Sbjct: 61  GSADNI----EGGADHGNSQSGDT--EDSTDGSDTNGAGVSERSKKRSRETTPDNSGDSK 114

Query: 176 GSFDKMLADANTENNTAEAVPGSVPGKPVVSMPATNLNIGMD--LWNTSPAAAGAAKMRT 233
               +        +++ +A+    PGK    +  T L+  M   L   +PA+       T
Sbjct: 115 SHLRRCQPTGEINDDSEKAIVAVRPGKVGEKVMGTVLSPSMTTTLEMRNPASTHLKASPT 174

Query: 234 NPSGASPAVAPAGIMPDQ-WIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVET 292
           N S  SPA      +P++ W+Q+ERELKR+KRKQSNRESARRSRLRKQAE EEL  RV++
Sbjct: 175 NVSQLSPA------LPNEAWLQNERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQS 228

Query: 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325
           L+ EN  L+ E+ +L E  EKL  EN ++ E L
Sbjct: 229 LTAENMTLKSEINKLMENSEKLKLENAALMERL 261

Trans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.

Nicotiana tabacum (taxid: 4097)

>sp|P25032|EMBP1_WHEAT DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 74/122 (60%), Gaps = 8/122 (6%)

Query: 200 PGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGASPAVAPAGIMPDQWIQDEREL 259
           PG+  ++  A NLNIGMD  + SP++    ++    S  S A             DEREL
Sbjct: 200 PGRAALTSAAPNLNIGMDPLSASPSSLVQGEVNAAASSQSNASLSQ--------MDEREL 251

Query: 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 319
           KR++RKQSNRESARRSRLRKQ ECEEL  +V  L+  N  LR EL +L ++C+ + +EN 
Sbjct: 252 KRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKTMETENK 311

Query: 320 SI 321
            +
Sbjct: 312 KL 313

Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P42775|GBF2_ARATH G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 58/78 (74%), Gaps = 2/78 (2%)

Query: 248 MPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRL 307
           +P  W  +E+E+KR+KRKQSNRESARRSRLRKQAE E+L  +V+ L  EN +LR +L +L
Sbjct: 241 VPQPW--NEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMSLRSKLGQL 298

Query: 308 SEECEKLTSENNSIKEDL 325
           + E EKL  EN +I + L
Sbjct: 299 NNESEKLRLENEAILDQL 316

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box.

Arabidopsis thaliana (taxid: 3702)

>sp|O35451|ATF6B_MOUSE Cyclic AMP-dependent transcription factor ATF-6 beta OS=Mus musculus GN=Atf6b PE=2 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 12/113 (10%)

Query: 221 TSPAAAGAAKMRTNPSGASPA--------VAPAGIMPDQWI---QDERELKRQKRKQSNR 269
            SP       +R  P G +PA        + PA  MP        D + LKRQ+R   NR
Sbjct: 275 VSPVVLIQGAIRVQPEGPAPAAPRPERKSIVPAP-MPGNSCPPEVDAKLLKRQQRMIKNR 333

Query: 270 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322
           ESA +SR +K+   + L+AR++ +  +N+ LR E   L    E L +EN+ +K
Sbjct: 334 ESACQSRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSGLK 386

Transcriptional factor that acts in the unfolded protein response (UPR) pathway by activating UPR target genes induced during ER stress. Binds DNA on the 5'-CCAC[GA]-3' half of the ER stress response element (ERSE) (5'-CCAATN(9)CCAC[GA]-3') when NF-Y is bound to ERSE.

Mus musculus (taxid: 10090)

>sp|Q54Y73|BZPD_DICDI Probable basic-leucine zipper transcription factor D OS=Dictyostelium discoideum GN=bzpD PE=3 SV=1

 Score = 52.0 bits (123), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 43/64 (67%)

Query: 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 313
           +DER +K+Q+R   NRESA+ SR+RK+   E+L+  +  L+ +N +L++E+  L    ++
Sbjct: 387 EDERNVKKQRRLIKNRESAQLSRMRKKIYIEDLEKTISDLTQDNSSLKEEVLYLQGLVKQ 446

Query: 314 LTSE 317
           L ++
Sbjct: 447 LAAQ 450

Probable transcriptional regulator.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
224134370	375	predicted protein [Populus trichocarpa]	0.971	0.912	0.733	1e-144
255568263	350	G-box-binding factor, putative [Ricinus	0.982	0.988	0.772	1e-140
118488723	354	unknown [Populus trichocarpa]	0.965	0.960	0.766	1e-137
225430826	364	PREDICTED: G-box-binding factor 1 [Vitis	1.0	0.967	0.747	1e-137
449451503	377	PREDICTED: G-box-binding factor 1-like [	0.988	0.923	0.692	1e-133
302398637	348	BZIP domain class transcription factor [	0.943	0.954	0.727	1e-129
359806400	337	bZIP transcription factor bZIP115 [Glyci	0.940	0.982	0.739	1e-129
351721587	338	bZIP transcription factor bZIP117 [Glyci	0.946	0.985	0.728	1e-126
1354857	339	bZIP transcriptional repressor ROM1 [Pha	0.943	0.979	0.725	1e-124
156070764	355	unknown [Solanum melongena]	0.948	0.940	0.688	1e-123

>gi|224134370|ref|XP_002327821.1| predicted protein [Populus trichocarpa] gi|222836906|gb|EEE75299.1| predicted protein [Populus trichocarpa]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 267/364 (73%), Positives = 294/364 (80%), Gaps = 22/364 (6%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MGT EE+T AK +K ASS QEIP TPSY DWS+S+QA+YGAGATPPPFFASTVASPTPHP
Sbjct: 1   MGTREESTPAKPSKPASSNQEIPATPSYPDWSNSVQAYYGAGATPPPFFASTVASPTPHP 60

Query: 61  YLWGSQ--------------------HPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTA 100
           Y+WGSQ                    HPL+PPYGTPVPY A+YP GGVYAHP+MA TP +
Sbjct: 61  YIWGSQVDISYCLRKAFIFFSVDNFQHPLIPPYGTPVPYPALYPAGGVYAHPNMAPTPNS 120

Query: 101 APTNTEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDA 160
           AP NTE EGK P+ KD ASAKK+KGT GGKAGE  KA S SGNDG SQSAESG+DGSSDA
Sbjct: 121 APANTELEGKVPDGKDHASAKKAKGTSGGKAGESGKAISDSGNDGASQSAESGTDGSSDA 180

Query: 161 SDENGNQQEFARGKKGSFDKMLADANTENNTAEA-VPGSVPGKPVVSMPATNLNIGMDLW 219
           SDEN NQQE A  KKGSF++MLADAN ++N+A A +  SVPGKPV SMPATNLNIGMDLW
Sbjct: 181 SDENTNQQENAANKKGSFNQMLADANAQSNSAGANIQTSVPGKPVGSMPATNLNIGMDLW 240

Query: 220 NTSPAAAGAAKMRTNPSGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRK 279
           N SP A+G  KMR NPSGAS  + PAG MP+QWIQDERELKRQKRKQSNRESARRSRLRK
Sbjct: 241 NASPDASGTTKMRPNPSGASSGIVPAG-MPEQWIQDERELKRQKRKQSNRESARRSRLRK 299

Query: 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339
           QAECEELQ RVE LSN+N NLRDELQ LSEEC KL SEN+ IKE+L+RL GPEAVANLEQ
Sbjct: 300 QAECEELQVRVENLSNDNCNLRDELQSLSEECNKLKSENDFIKEELTRLYGPEAVANLEQ 359

Query: 340 SNPT 343
           +NP 
Sbjct: 360 TNPV 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568263|ref|XP_002525106.1| G-box-binding factor, putative [Ricinus communis] gi|223535565|gb|EEF37233.1| G-box-binding factor, putative [Ricinus communis]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/356 (77%), Positives = 301/356 (84%), Gaps = 10/356 (2%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MGTGEE+T AK +K  SS QEIP TP+Y DWS+SMQA+YGAGATPP FFASTV SPTPHP
Sbjct: 1   MGTGEESTPAKPSKP-SSAQEIPPTPAYPDWSNSMQAYYGAGATPP-FFASTVPSPTPHP 58

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           YLWG QHPLMPPYGTPVPY A+YP GGVYAHP+MAT P  A  NTE EGKGP+ +++AS 
Sbjct: 59  YLWGGQHPLMPPYGTPVPYPALYPAGGVYAHPNMATPPNPAQANTEYEGKGPDGREKASV 118

Query: 121 KKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKGSFDK 180
           KKSKG   GKAGE  KATSGSGNDG SQSAESGSDGSSDASDEN N Q+FA  KKGSFD+
Sbjct: 119 KKSKGNVVGKAGESAKATSGSGNDGASQSAESGSDGSSDASDENNNHQDFAANKKGSFDQ 178

Query: 181 MLADANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAA-GAAKMRTNPSGAS 239
           MLADAN +NNTA A   SVPGKPVVSMPATNLNIGMDLWN SPAAA GA K+R N SG S
Sbjct: 179 MLADANAQNNTAGA---SVPGKPVVSMPATNLNIGMDLWNASPAAAPGATKIRPNASGGS 235

Query: 240 PAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRN 299
             + PA IMP+QWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETL+ +NRN
Sbjct: 236 SGIVPA-IMPEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLTTDNRN 294

Query: 300 LRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT---QSCGEEENS 352
           LRDELQRLSEEC+KL SEN+SIKE+L+RL GP+AVANLEQSN +   Q  G+E NS
Sbjct: 295 LRDELQRLSEECDKLKSENDSIKEELTRLYGPDAVANLEQSNHSSVVQFRGDEGNS 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488723|gb|ABK96172.1| unknown [Populus trichocarpa]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/343 (76%), Positives = 290/343 (84%), Gaps = 3/343 (0%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MGTGEE+T AK +K  SS QEIPTTP Y DWSSSMQA+YGAGATPPPF+ASTVASP  HP
Sbjct: 1   MGTGEESTPAKPSKPTSSNQEIPTTPLYPDWSSSMQAYYGAGATPPPFYASTVASPASHP 60

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           YLWGSQHPL+PPYGTPVPY A+YP GGVYAHP+MA TP +A  N E EGK P  KDRASA
Sbjct: 61  YLWGSQHPLIPPYGTPVPYPALYPAGGVYAHPNMAPTPNSAQANIEMEGKVPNGKDRASA 120

Query: 121 KKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKGSFDK 180
           KK+KGT GGKAGE  KA SGSGNDG SQSAESGSDGSSDASDEN NQQE+   KKGSF++
Sbjct: 121 KKTKGTSGGKAGESGKAASGSGNDGASQSAESGSDGSSDASDENTNQQEYGASKKGSFNQ 180

Query: 181 MLADANTENNTAEA-VPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSGAS 239
           MLADAN ++ +A A +  SVPGKPV SMPATNLNIGMDLWN S +AAGA KMR NPS A+
Sbjct: 181 MLADANAQSTSAGANIQASVPGKPVASMPATNLNIGMDLWNAS-SAAGATKMRPNPSCAT 239

Query: 240 PAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRN 299
             V PAG +P+QWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARV+ LS++N N
Sbjct: 240 SGVVPAG-LPEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQNLSSDNSN 298

Query: 300 LRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342
           LR+ELQ LSEEC KL SEN+SIKE+L+RL GPE VA LEQSNP
Sbjct: 299 LRNELQSLSEECNKLKSENDSIKEELTRLYGPEVVAKLEQSNP 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430826|ref|XP_002272761.1| PREDICTED: G-box-binding factor 1 [Vitis vinifera] gi|297735196|emb|CBI17558.3| unnamed protein product [Vitis vinifera]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/364 (74%), Positives = 303/364 (83%), Gaps = 12/364 (3%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MG GE+ T  K +K  SS QE+PTTPSY +WSSSMQA+YG GATPPPFFA +VASPTPHP
Sbjct: 1   MGAGEDTTPTKPSKPTSSAQEMPTTPSYPEWSSSMQAYYGPGATPPPFFAPSVASPTPHP 60

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           YLWGSQHPL+PPYGTPVPY A+YPPGGVYAHP++AT P+AA  N E EGKGPE KD+ASA
Sbjct: 61  YLWGSQHPLIPPYGTPVPYSALYPPGGVYAHPNLATAPSAAHLNPELEGKGPEGKDKASA 120

Query: 121 KKSKGTPGG--KAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKGSF 178
           KKSKGT G   K GE  KA SGSGNDG S SAESGS+GSSDASDEN NQQEFA  KKGSF
Sbjct: 121 KKSKGTSGNTVKGGESGKAASGSGNDGASPSAESGSEGSSDASDENTNQQEFASSKKGSF 180

Query: 179 DKMLADANTENN-TAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSG 237
           ++MLADAN +NN +  +V  SVPGKPV+SMPATNLNIGMDLW+ SP  +GA K+R NPSG
Sbjct: 181 NQMLADANAQNNISGTSVQASVPGKPVISMPATNLNIGMDLWSASPGGSGATKLRPNPSG 240

Query: 238 ASPAVAPA------GIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVE 291
            S +VAPA      G+MPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQA+VE
Sbjct: 241 ISSSVAPAAMVGREGVMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQAKVE 300

Query: 292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAV-ANLEQSNPT--QSCGE 348
           TLS EN  LRDELQRLSEECEKLTSENNSIKE+L+R+CG +AV ANL++ NPT  QS G 
Sbjct: 301 TLSTENTALRDELQRLSEECEKLTSENNSIKEELTRVCGADAVAANLKEKNPTQLQSQGV 360

Query: 349 EENS 352
           E NS
Sbjct: 361 EGNS 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451503|ref|XP_004143501.1| PREDICTED: G-box-binding factor 1-like [Cucumis sativus] gi|449530949|ref|XP_004172454.1| PREDICTED: G-box-binding factor 1-like [Cucumis sativus]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/364 (69%), Positives = 289/364 (79%), Gaps = 16/364 (4%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MGTGEE T +KT+K  SS+QEI  TPSY DWSSS+QA+YGAGATPPPFFASTVASPTPHP
Sbjct: 12  MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSVQAYYGAGATPPPFFASTVASPTPHP 71

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           YLWG QHPLM PYGTPVPY AIYPPGGVYAHP++  TP + P N E EGK P+ K+R S 
Sbjct: 72  YLWGGQHPLMSPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERVS- 130

Query: 121 KKSKG------TPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGK 174
           KKSKG      + GG+ GE  K  S SGNDG SQSAESG++GSS+ SDENGNQQEFA  K
Sbjct: 131 KKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENGNQQEFAANK 190

Query: 175 KGSFDKMLAD-ANTENNTAE-AVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMR 232
           KGSF++MLAD AN +NNT       SV GKP+ ++P TNLN+GMDLWNT+ A +GA K+R
Sbjct: 191 KGSFNQMLADGANAQNNTGGPNAKSSVTGKPIANIPGTNLNMGMDLWNTTNAGSGAGKVR 250

Query: 233 TNPSGAS----PAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQA 288
            N   ++    P V   G+MP+QW+QDERELKRQKRKQSNRESARRSRLRKQAECEELQA
Sbjct: 251 GNAVSSAIVTVPMVGRDGMMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQA 310

Query: 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN---PTQS 345
           RV+TL+NENR LRDELQRLSEECEKLTSEN+SIKE+L+R CGPEA+AN E+ N   P QS
Sbjct: 311 RVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEELTRFCGPEALANFEKGNAAPPAQS 370

Query: 346 CGEE 349
            G E
Sbjct: 371 RGGE 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398637|gb|ADL36613.1| BZIP domain class transcription factor [Malus x domestica]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/345 (72%), Positives = 274/345 (79%), Gaps = 13/345 (3%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MGTGEE T  K +K AS+ QEIPT PSY DWSSSMQA+YG G TPPPFFASTVASPTPHP
Sbjct: 1   MGTGEEGTPPKPSKQASTAQEIPTPPSYPDWSSSMQAYYGPGGTPPPFFASTVASPTPHP 60

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           Y+WG+QHP+MPPYGTPVPY A+YPPGGVYAHPSM TTP A     E EGKG + K+RAS 
Sbjct: 61  YMWGAQHPMMPPYGTPVPYPAMYPPGGVYAHPSMVTTPGAPQPAPELEGKGSDGKERAST 120

Query: 121 KKSKGT------PGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGK 174
           KK+KGT       GGKA E  KATSGSGNDG SQS ESGS+GSSD SD+N N QE+   K
Sbjct: 121 KKTKGTAGNASLAGGKAVESGKATSGSGNDGASQSGESGSEGSSDGSDDNANHQEYGTNK 180

Query: 175 KGSFDKMLADANTENNTAEAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTN 234
           KGSFDKMLAD     N+  A+  SVPGKP VSMP TNLNIGMDLWN SPA AGAAK+R N
Sbjct: 181 KGSFDKMLADGANAQNSTGAIQASVPGKP-VSMPGTNLNIGMDLWNASPAGAGAAKVRGN 239

Query: 235 PSGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLS 294
           PSGA  A        + WIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVE LS
Sbjct: 240 PSGAPSAGG------EHWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVEVLS 293

Query: 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339
           NEN  LR+EL RLSEECEKLTSEN +IKE+L+R+CGP+ VANLEQ
Sbjct: 294 NENHGLREELHRLSEECEKLTSENTNIKEELTRVCGPDLVANLEQ 338

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806400|ref|NP_001240983.1| bZIP transcription factor bZIP115 [Glycine max] gi|255636358|gb|ACU18518.1| unknown [Glycine max]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/342 (73%), Positives = 276/342 (80%), Gaps = 11/342 (3%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MG GEE+T AK++K +S+ QE PT  +Y DWSSSMQA+Y  G TPPPFFASTVASPTPHP
Sbjct: 1   MGAGEEST-AKSSKVSSAAQETPTALAYPDWSSSMQAYYAPGGTPPPFFASTVASPTPHP 59

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           YLWGSQHPLMPPYGTPVPY AIYPPG +YAHPSMA  P+    +TE EGKG + KDR  +
Sbjct: 60  YLWGSQHPLMPPYGTPVPYPAIYPPGSIYAHPSMAVNPSIVQQSTEIEGKGADGKDRDLS 119

Query: 121 KKSKGTP---GGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKGS 177
           KK KGT    G KAGE  KA SGSGNDG+SQS ESGS+GSS+ASDEN NQQE A  KKGS
Sbjct: 120 KKLKGTSANTGSKAGESGKAGSGSGNDGISQSGESGSEGSSNASDENTNQQESAAKKKGS 179

Query: 178 FDKMLAD-ANTENNTAEAVP-GSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNP 235
           FD ML D AN +NN+A A+   SVPGKPVV MPATNLNIGMDLWN S   A AAKMR N 
Sbjct: 180 FDLMLVDGANAQNNSAGAISQSSVPGKPVVPMPATNLNIGMDLWNASSGGAEAAKMRHNQ 239

Query: 236 SGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSN 295
           SGA P VA    + DQW+QDERELKRQKRKQSNRESARRSRLRKQAECEELQ RVE+L  
Sbjct: 240 SGA-PGVA----LGDQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQKRVESLGG 294

Query: 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 337
           EN+ LRDELQRLSEECEKLTSENNSIKE+L RLCGPEAVANL
Sbjct: 295 ENQTLRDELQRLSEECEKLTSENNSIKEELERLCGPEAVANL 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721587|ref|NP_001237982.1| bZIP transcription factor bZIP117 [Glycine max] gi|113367212|gb|ABI34663.1| bZIP transcription factor bZIP117 [Glycine max]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/343 (72%), Positives = 276/343 (80%), Gaps = 10/343 (2%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MG GEE+T+  +  ++S+ Q+ PT P+Y DWSSSMQA+Y  GATPPPFFA+TVASPTPHP
Sbjct: 1   MGAGEESTAKSSKSSSSAQQDTPTAPAYPDWSSSMQAYYAPGATPPPFFATTVASPTPHP 60

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATTPTAAPTNTEPEGKGPEAKDRASA 120
           YLWG QHPLMPPYGTPVPY AIYPPG +YAHPSMA TP+A   NTE EGKG E K R S+
Sbjct: 61  YLWGGQHPLMPPYGTPVPYPAIYPPGSIYAHPSMAVTPSAVQQNTEIEGKGAEGKYRDSS 120

Query: 121 KKSKG---TPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKGS 177
           KK KG       KAGE  KA SGSGNDG+SQS ESGS+GSS+ASDEN NQQE A  KKGS
Sbjct: 121 KKLKGPSANTASKAGESGKAGSGSGNDGISQSGESGSEGSSNASDENTNQQESAANKKGS 180

Query: 178 FDKMLAD-ANTENNTAEAVP-GSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNP 235
           FD ML D AN +NN+A A+   SVPGKPVV MPATNLNIGMDLWN S   A AAKMR N 
Sbjct: 181 FDLMLVDGANAQNNSAGAISQSSVPGKPVVPMPATNLNIGMDLWNASSGGAEAAKMRHNQ 240

Query: 236 SGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSN 295
           SGA P VA    + DQW+QDERELKRQKRKQSNRESARRSRLRKQAECEELQ RVE+L  
Sbjct: 241 SGA-PGVA----LGDQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQKRVESLGG 295

Query: 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338
           EN+ LR+ELQRLSEECEKLTSENNSIKE+L RLCGPEAVANL+
Sbjct: 296 ENQTLREELQRLSEECEKLTSENNSIKEELERLCGPEAVANLD 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1354857|gb|AAB36514.1| bZIP transcriptional repressor ROM1 [Phaseolus vulgaris]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/343 (72%), Positives = 278/343 (81%), Gaps = 11/343 (3%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MG GEE ++ K++K++SS QE PT P+Y DWSSSMQA+Y  GA PPPFFASTVASPTPHP
Sbjct: 1   MGAGEE-STTKSSKSSSSVQETPTVPAYPDWSSSMQAYYAPGAAPPPFFASTVASPTPHP 59

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAH-PSMATTPTAAPTNTEPEGKGPEAKDRAS 119
           YLWGSQHPLMPPYGTPVPY A+YPPG +YAH PSMA TP+    +TE EGKG + KDR S
Sbjct: 60  YLWGSQHPLMPPYGTPVPYPALYPPGSIYAHHPSMAVTPSVVQQSTEIEGKGTDGKDRDS 119

Query: 120 AKKSKGT---PGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKG 176
           +KK KGT    G KAGE  KA SGSGNDG+SQS ESGS+GSS+ASDEN NQQE A  KKG
Sbjct: 120 SKKLKGTSANAGSKAGESGKAGSGSGNDGMSQSGESGSEGSSNASDENNNQQESATNKKG 179

Query: 177 SFDKMLAD-ANTENNTAEAVP-GSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTN 234
           SFD ML D AN +NN+  A+   S+PGKPVVSMPATNLNIGMDLWN S     AAKMR N
Sbjct: 180 SFDLMLVDGANAQNNSGGAISQSSMPGKPVVSMPATNLNIGMDLWNASSGGGEAAKMRHN 239

Query: 235 PSGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLS 294
            SGA   VA    + +QWIQDERELKRQKRKQSNRESARRSRLRKQAECE+LQ RVETL 
Sbjct: 240 QSGAPGVVA----LGEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEDLQKRVETLG 295

Query: 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 337
           +ENR LR+ELQRLSEECEKLTSEN+SIKE+L R+CGPEAVANL
Sbjct: 296 SENRTLREELQRLSEECEKLTSENSSIKEELERMCGPEAVANL 338

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156070764|gb|ABU45179.1| unknown [Solanum melongena]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/343 (68%), Positives = 272/343 (79%), Gaps = 9/343 (2%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MG  EE T  KT+K+A  TQE P  P+Y DWSSSMQA+Y AGATPP FFAS VASP PHP
Sbjct: 1   MGAEEETTPTKTSKSAL-TQETPPAPAYPDWSSSMQAYYSAGATPP-FFASPVASPAPHP 58

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMAT-TPTAAPTNTEPEGKGPEAKDRAS 119
           YLWG QHPLMPPYGTPVPY A+YPP GVYAHP++AT TP  AP N E +GKGPE KDR S
Sbjct: 59  YLWGGQHPLMPPYGTPVPYPALYPPAGVYAHPNIATQTPNTAPANPESDGKGPEGKDRNS 118

Query: 120 AKKSKGTPGGKAGEIVKATSGSGNDGVSQSAESGSDGSSDASDENGNQQEFARGKKGSFD 179
           +KK K   GGKAG+  K TSGSGNDG +QS ES S+G++D +DE  N  EFA  KKGSFD
Sbjct: 119 SKKLKACSGGKAGDNGKVTSGSGNDGATQSDESRSEGTTDTNDETDNH-EFAANKKGSFD 177

Query: 180 KMLAD-ANTENNTA-EAVPGSVPGKPVVSMPATNLNIGMDLWNTSPAAAGAAKMRTNPSG 237
           +MLAD A+ +NN A E  P S+ G PV ++PATNLNIGMD+WN S AA GA K++ N SG
Sbjct: 178 QMLADGASAQNNPATENYPTSIHGNPV-AVPATNLNIGMDVWNASAAAPGAIKVQPNASG 236

Query: 238 ASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNEN 297
             P +   G M DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQ RVE LS+EN
Sbjct: 237 --PVIVHEGRMNDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQRRVEALSHEN 294

Query: 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340
            +L+DELQ+LSEECEKLTSENNSIKE+L+R+CGP+AV+ LE++
Sbjct: 295 HSLKDELQQLSEECEKLTSENNSIKEELTRICGPDAVSKLERN 337

Source: Solanum melongena

Species: Solanum melongena

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
TAIR|locus:2062455	409	bZIP16 "basic region/leucine z	0.397	0.342	0.482	5.8e-51
TAIR|locus:2115250	315	GBF1 "G-box binding factor 1"	0.866	0.968	0.376	2e-47
TAIR|locus:2063020	382	GBF3 "G-box binding factor 3"	0.295	0.272	0.477	2.4e-38
TAIR|locus:2124938	360	GBF2 "G-box binding factor 2"	0.215	0.211	0.564	5e-32
TAIR|locus:2031705	389	bZIP68 "basic region/leucine z	0.715	0.647	0.324	7.6e-25
TAIR|locus:2092595	173	bZIP42 "AT3G30530" [Arabidopsi	0.25	0.508	0.395	3e-11
TAIR|locus:2166650	165	bZIP43 "AT5G38800" [Arabidopsi	0.284	0.606	0.358	3e-11
TAIR|locus:2827461	166	bZIP48 "AT2G04038" [Arabidopsi	0.207	0.439	0.486	3.9e-11
TAIR|locus:2012413	138	bZIP "AT1G68880" [Arabidopsis	0.204	0.521	0.479	5.1e-11
TAIR|locus:2143191	186	bZIP3 "AT5G15830" [Arabidopsis	0.184	0.349	0.461	1.9e-10

TAIR|locus:2062455 bZIP16 "basic region/leucine zipper transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 5.8e-51, Sum P(3) = 5.8e-51
 Identities = 71/147 (48%), Positives = 88/147 (59%)

Query:   210 TNLNIGMDLWNTSPAAAGA----AKMRTNXXXXXXXXXXXXIMPDQWIQDERELKRQKRK 265
             TNLNIGMD W  +P +AG      K+ T                  W+QD+RELKRQ+RK
Sbjct:   254 TNLNIGMDYWG-APTSAGIPGMHGKVSTPVPGVVAPGSRDGGHSQPWLQDDRELKRQRRK 312

Query:   266 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325
             QSNRESARRSRLRKQAEC+EL  R E L+ EN NLR E+ +L  +CE+LT+EN S+K+ L
Sbjct:   313 QSNRESARRSRLRKQAECDELAQRAEVLNEENTNLRAEINKLKSQCEELTTENTSLKDQL 372

Query:   326 SRLCGPEAVA--NLEQSNPTQSCGEEE 350
             S     E ++  N  Q   T   G  E
Sbjct:   373 SLFPPLEGISMDNDHQEPDTNQTGAAE 399

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0006473 "protein acetylation" evidence=RCA

TAIR|locus:2115250 GBF1 "G-box binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 124/329 (37%), Positives = 158/329 (48%)

Query:     1 MGTGEENXXXXXXXXXXXXQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
             MGT E+             QE+P TP Y DW +SMQA+YG G TP PFF S V SP+PHP
Sbjct:     1 MGTSEDKMPFKTTKPTSSAQEVPPTP-YPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHP 59

Query:    61 YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMXXXXXXXXXXXXXXGKGPEAKDRASA 120
             Y+WG+QH +MPPYGTPVPY A+YPPG VYAHPSM               K P AKD+AS 
Sbjct:    60 YMWGAQHHMMPPYGTPVPYPAMYPPGAVYAHPSMPMPPNSGPT-----NKEP-AKDQASG 113

Query:   121 KKSKGTPGGKAGEIVKATSGSGNDGVSQXXXXXXXXXXXXXXXXXXQQEFARGKKGSFDK 180
             KKSKG    KA    KA SGSGNDG S                   QQE    +K SF +
Sbjct:   114 KKSKGNSKKKAEGGDKALSGSGNDGASHSDESVTAGSSDENDENANQQEQGSIRKPSFGQ 173

Query:   181 MLADXXXXXXXXXXXXXXXXXXXXXXXXATNLNIGMDLWNTS---PAAAGAAKMRTNXXX 237
             MLAD                         TNLNIGMDLW++    P        R     
Sbjct:   174 MLADASSQSTTGEIQGSVPMKPVAP---GTNLNIGMDLWSSQAGVPVKDERELKRQKRKQ 230

Query:   238 XXXXXXXXXIMPDQWIQDERELKRQKRKQSNRESARRSRLRK-QAECEELQARVETLSNE 296
                       +  Q   +  +L+++    SN   + R  L++  +EC++L++       E
Sbjct:   231 SNRESARRSRLRKQ--AECEQLQQRVESLSNENQSLRDELQRLSSECDKLKS-------E 281

Query:   297 NRNLRDELQR-LSEECEKLTSENNSIKED 324
             N +++DELQR L  E      +N +  +D
Sbjct:   282 NNSIQDELQRVLGAEAVANLEQNAAGSKD 310

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IEP

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2063020 GBF3 "G-box binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.4e-38, Sum P(3) = 2.4e-38
 Identities = 52/109 (47%), Positives = 71/109 (65%)

Query:   247 IMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQR 306
             + P+ W+Q+ERELKR++RKQSNRESARRSRLRKQAE EEL  +VE L+ EN  LR EL +
Sbjct:   248 VPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQ 307

Query:   307 LSEECEKLTSENNSIKEDLSRLCG-PE--AVANLEQSNPTQSCGEEENS 352
             L+E+ +KL   N ++ + L   C  PE    AN+         G++  +
Sbjct:   308 LNEKSDKLRGANATLLDKLK--CSEPEKRVPANMLSRVKNSGAGDKNKN 354

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2124938 GBF2 "G-box binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 5.0e-32, Sum P(2) = 5.0e-32
 Identities = 44/78 (56%), Positives = 58/78 (74%)

Query:   248 MPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRL 307
             +P  W  +E+E+KR+KRKQSNRESARRSRLRKQAE E+L  +V+ L  EN +LR +L +L
Sbjct:   241 VPQPW--NEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMSLRSKLGQL 298

Query:   308 SEECEKLTSENNSIKEDL 325
             + E EKL  EN +I + L
Sbjct:   299 NNESEKLRLENEAILDQL 316

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009637 "response to blue light" evidence=IDA

TAIR|locus:2031705 bZIP68 "basic region/leucine zipper transcription factor 68" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 95/293 (32%), Positives = 121/293 (41%)

Query:    58 PHPYLW----GSQ--HPLMPPYGTPV-PYQAIYPPGGVYAHPSMXXXXXXXXXXXXXXGK 110
             PHPY+     G    HP +PP   P  PY A+  P G      M              GK
Sbjct:    88 PHPYVTMYPPGGMYAHPSLPPGSYPYSPY-AMPSPNG------MAEASGNTGSVIEGDGK 140

Query:   111 GPEAKDRASAKKSKGTPG------GKAGEIVKATSGSGNDGVSQXXXXXXXXXXXXXXXX 164
               + K++   K+SKG+ G      GK  E  K +  S N   S+                
Sbjct:   141 PSDGKEKLPIKRSKGSLGSLNMIIGKNNEAGKNSGASANGACSKSAESGSDGSSDGSDAN 200

Query:   165 XXQQEFAR--GKKGSFDKMLADXXXXXXXXXXXXXXXXXXXXXXXXAT-------NLNIG 215
                   +R  GK G                                AT       NLNIG
Sbjct:   201 SQNDSGSRHNGKDGETASESGGSAHGPPRNGSNLPVNQTVAIMPVSATGVPGPPTNLNIG 260

Query:   216 MDLWNTSPAAAGAAKMRTNXXXXXXXXXXXXIMPDQWIQ--DERELKRQKRKQSNRESAR 273
             MD W+     +GA                    P  W+Q  DERE+KRQ+RKQSNRESAR
Sbjct:   261 MDYWSGHGNVSGAVP--------GVVVDGSQSQP--WLQVSDEREIKRQRRKQSNRESAR 310

Query:   274 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326
             RSRLRKQAEC+EL  R E L+ EN +LR E+ +L  + E+L +EN+S+K   S
Sbjct:   311 RSRLRKQAECDELAQRAEVLNGENSSLRAEINKLKSQYEELLAENSSLKNKFS 363

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006473 "protein acetylation" evidence=RCA

TAIR|locus:2092595 bZIP42 "AT3G30530" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 36/91 (39%), Positives = 57/91 (62%)

Query:   260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 319
             ++Q+R  SNRESARRSR+RKQ   +EL ++V  L  EN  L D+L  LSE  +K+  EN 
Sbjct:    81 RKQRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNLSESHDKVLQENA 140

Query:   320 SIKEDLSRLCGPEAVANLEQSNPTQSCGEEE 350
              +KE+   L   + +++++  +P  SC  ++
Sbjct:   141 QLKEETFEL--KQVISDMQIQSPF-SCFRDD 168

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2166650 bZIP43 "AT5G38800" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 38/106 (35%), Positives = 67/106 (63%)

Query:   250 DQWIQDEREL---KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQR 306
             D+  ++ +E+   ++QKRK SNRESARRSR+RKQ + +EL ++V  L +EN  L  +L  
Sbjct:    59 DEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVMWLRDENHQLLRKLNC 118

Query:   307 LSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQ-SCGEEEN 351
             + E  EK+  EN  +KE+ + L   + +++++  N +  SC  +++
Sbjct:   119 VLESQEKVIEENVQLKEETTEL--KQMISDMQLQNQSPFSCIRDDD 162

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2827461 bZIP48 "AT2G04038" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 37/76 (48%), Positives = 50/76 (65%)

Query:   253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 312
             + DER   +Q+R  SNRESARRSR+RKQ   +EL ++V  L NEN  L D+L R+SE   
Sbjct:    70 VLDER---KQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNRVSETQN 126

Query:   313 KLTSENNSIKEDLSRL 328
              +  EN+ +KE+ S L
Sbjct:   127 CVLKENSKLKEEASDL 142

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2012413 bZIP "AT1G68880" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 35/73 (47%), Positives = 50/73 (68%)

Query:   255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
             ++ E KR +RK SNRESARRSR+RKQ   EEL + +  L N+N++L DEL +  E  EK+
Sbjct:    43 EDNERKR-RRKVSNRESARRSRMRKQRHMEELWSMLVQLINKNKSLVDELSQARECYEKV 101

Query:   315 TSENNSIKEDLSR 327
               EN  ++E+ S+
Sbjct:   102 IEENMKLREENSK 114

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2143191 bZIP3 "AT5G15830" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 30/65 (46%), Positives = 47/65 (72%)

Query:   260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 319
             ++Q+R  SNRESARRSR+RKQ   +EL ++V  L +EN  L D+L ++S+  + +  EN+
Sbjct:    74 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQVSDNNDLVIQENS 133

Query:   320 SIKED 324
             S+KE+
Sbjct:   134 SLKEE 138

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42774	GBF1_ARATH	No assigned EC number	0.6029	0.8636	0.9650	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.57.289.1 hypothetical protein (328 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	352
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	1e-54
smart00338	65	smart00338, BRLZ, basic region leucin zipper	1e-26
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	3e-26
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	3e-15
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	3e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-06
pfam09744	158	pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated prot	8e-05
pfam07558	46	pfam07558, Shugoshin_N, Shugoshin N-terminal coile	9e-05
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	1e-04
pfam06005	72	pfam06005, DUF904, Protein of unknown function (DU	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
pfam03131	93	pfam03131, bZIP_Maf, bZIP Maf transcription factor	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	8e-04
pfam11559	149	pfam11559, ADIP, Afadin- and alpha -actinin-Bindin	8e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
pfam04156	186	pfam04156, IncA, IncA protein	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	0.002
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.002
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.002
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.004
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score =  177 bits (450), Expect = 1e-54
 Identities = 90/187 (48%), Positives = 112/187 (59%), Gaps = 22/187 (11%)

Query: 1   MGTGEENTSAKTAKTASSTQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHP 60
           MG+ EE   +K++   S  ++ PT   Y DWS+ MQA+YG    PP F +S  +SP PHP
Sbjct: 1   MGSSEEGKPSKSSPKTSVQEDTPTPTVYPDWSA-MQAYYGPRPPPPYFNSSVASSPQPHP 59

Query: 61  YLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSM--------------ATTPTAAPTNTE 106
           Y+WG Q P+MPPYGTP PY A+YPPGGVYAHPSM              A  P + P + E
Sbjct: 60  YMWGPQQPMMPPYGTPPPYAAMYPPGGVYAHPSMPPGSHPFSPYAMPSAEVPGSTPLSME 119

Query: 107 PEGKGPEAKDRASAKKSKGTPG-------GKAGEIVKATSGSGNDGVSQSAESGSDGSSD 159
            + K  + KD+ S KKSKG+ G       GK GE  KA+  S N G SQS+ESGSDGSS+
Sbjct: 120 TDAKSSDNKDKGSIKKSKGSDGSLGLAMSGKNGESGKASGSSANGGSSQSSESGSDGSSE 179

Query: 160 ASDENGN 166
            SD N  
Sbjct: 180 GSDGNSQ 186

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score =   99 bits (250), Expect = 1e-26
 Identities = 34/65 (52%), Positives = 46/65 (70%)

Query: 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315
           E + KR++R++ NRE+ARRSR RK+AE EEL+ +VE L  EN  L+ E++RL  E EKL 
Sbjct: 1   EEDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60

Query: 316 SENNS 320
           SE   
Sbjct: 61  SELEE 65

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 98.9 bits (247), Expect = 3e-26
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query: 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315
           E+ELKR++R+Q NRE+ARRSRLRK+A  EEL+ +V+ L  EN+ LR EL+RL +EC KL 
Sbjct: 1   EKELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLK 60

Query: 316 SEN 318
           SEN
Sbjct: 61  SEN 63

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 68.9 bits (169), Expect = 3e-15
 Identities = 22/54 (40%), Positives = 35/54 (64%)

Query: 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 312
             R +++  NRE+ARRSR RK    ++L+ +VE L++EN +L DE+ RL +   
Sbjct: 1   DPRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKKALA 54

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 258 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 310
           +  R +R++ N E+ARRSR +K+   EEL+ RV+ L  EN  LR ++++L +E
Sbjct: 3   DEYRDRRRR-NNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQLEKE 54

Length = 54

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 254 QDERELKRQKRKQSNRESARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECE 312
               EL+RQ  +   +    +  L   + E E+LQ+R+E L  E   L +EL+ L E  E
Sbjct: 702 DLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLE 761

Query: 313 KLTSENNSIKEDLSRL 328
           +L  E  S++E L++L
Sbjct: 762 ELEEELESLEEALAKL 777

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 257 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316
            E ++++ K +   +  +  L      E+L+A +E +  E    RDEL+   E+ EKL  
Sbjct: 346 EEERKRRDKLTEEYAELKEEL------EDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399

Query: 317 ENNSIKEDLSRL 328
           E N +K +L RL
Sbjct: 400 EINELKRELDRL 411

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 254 QDERELKRQKRKQSNR------ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRL 307
           Q ERE  ++ RKQ+ +      +   + +   Q + E+L+  V  L  + +NL D++ RL
Sbjct: 65  QYERE--KELRKQAEQKLLEFEDELEQEKKELQKKIEDLEENVRQLELKAKNLSDQVSRL 122

Query: 308 SEECEKLTSENNSIKE 323
            E   +L  E NS+ E
Sbjct: 123 EERETELKKEYNSLHE 138

This is the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have an RhoGEF pfam00621 domain at their C-terminal end. Length = 158

>gnl|CDD|203682 pfam07558, Shugoshin_N, Shugoshin N-terminal coiled-coil region

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQR 306
           ++K  + N E A+ +      +  EL+  V  L NEN NLR+ L  
Sbjct: 2   KEKYLKQNAELAKNNSALSI-KISELEKEVSKLLNENVNLRELLLA 46

The Shugoshin protein is found to have this conserved N-terminal coiled-coil region and a highly conserved C-terminal basic region, family Shugoshin_C pfam07557. Shugoshin is a crucial target of Bub1 kinase function at kinetochores, necessary for both meiotic and mitotic localisation of shugoshin to the kinetochore. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process. Length = 46

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 267 SNRESARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325
           S+  SAR  RL + Q E  ELQ  +  L  +   L+ E Q L +E   L +E   ++++L
Sbjct: 59  SDTPSAR-ERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKEL 117

Query: 326 SRL-CGPEAVANLEQSN 341
           +R+         L++ N
Sbjct: 118 ARIKQLSANAIELDEEN 134

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|203371 pfam06005, DUF904, Protein of unknown function (DUF904)

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 14/46 (30%), Positives = 28/46 (60%)

Query: 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329
           EEL+++++        L+ E++ L EE E+L+ EN  ++E+  +L 
Sbjct: 7   EELESKIQQAVETIALLQMEIEELKEENEQLSEENEELEEENKKLK 52

This family consists of several bacterial and archaeal hypothetical proteins of unknown function. Length = 72

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 253 IQDERE-------LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQ 305
           ++ E         L + K  +   E       R + E EELQ  +E    E   L+ EL+
Sbjct: 218 LKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELE 277

Query: 306 RLSEECEKLTSENNSIKEDLSRL 328
            L EE E+L  E   +KE++  L
Sbjct: 278 ELREELEELQEELLELKEEIEEL 300

Length = 1163

>gnl|CDD|190534 pfam03131, bZIP_Maf, bZIP Maf transcription factor

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 259 LKRQKRKQSNR---ESARRSRLRKQAECE----ELQARVETLSNENRNLRDELQRLSEEC 311
           LK+++R   NR   +S R  R++++ E E    +LQ +VE L  E   L  E   L  + 
Sbjct: 29  LKQRRRTLKNRGYAQSCRSKRVQQRHELEKEKSQLQQQVEQLKQEVSRLARERDALKAKY 88

Query: 312 EKLTS 316
           E L S
Sbjct: 89  EALQS 93

Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerisation and DNA binding property. Thus, this family is probably related to pfam00170. Length = 93

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 256 ERELKRQKRK----QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 311
           E +++  + K    +      R+     + E E+L+  +E LS +   LR +L RL  E 
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742

Query: 312 EKLTSENNSIKEDLSRLCGPEAVAN--LEQSNPTQSCGEEE 350
           E+L      + ++L+ L          LE++    +  E E
Sbjct: 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 12/85 (14%)

Query: 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETL------------SNENRNLRDE 303
           ERE K  K+ +   + A       +   EEL+  +E L              E   L  E
Sbjct: 615 EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRE 674

Query: 304 LQRLSEECEKLTSENNSIKEDLSRL 328
           L  L  E E+L      IK+ L +L
Sbjct: 675 LAGLRAELEELEKRREEIKKTLEKL 699

Length = 880

>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE- 317
           L+++ R    RES   +  + +AE E LQ  +E L  +  +L  EL  L  +  +L  + 
Sbjct: 42  LQQRDRDLEFRESLEETLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKL 101

Query: 318 ------NNSIKEDLSRL 328
                   + KE++ RL
Sbjct: 102 KTLEQKLKNEKEEVQRL 118

This family is found in mammals where it is localised at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions. Length = 149

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 313
           +     +  ++ QS  E         + E EELQ R+E L  E  +L + L +L EE E+
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 314 LTSENNSIKE 323
           L  +  +++E
Sbjct: 784 LEEKRQALQE 793

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 254 QDERELKRQ------KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRL 307
            + REL+        +  +   E  +      + E EEL A ++ L  +   LR E+  L
Sbjct: 220 AELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL 279

Query: 308 SEECEKLTSENNSIKEDLSRL 328
            EE E+L  E  ++  ++SRL
Sbjct: 280 EEEIEELQKELYALANEISRL 300

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 273 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330
              +  +  + EELQ  +  L  +   L++EL+ L E   +L SE   +KEDL  L  
Sbjct: 64  APVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRE 121

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 16/73 (21%), Positives = 30/73 (41%)

Query: 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 313
           + E EL+  +      E         +   E+L+ ++E L +E   L +E   L++  E+
Sbjct: 302 ELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEE 361

Query: 314 LTSENNSIKEDLS 326
              E     E+L 
Sbjct: 362 RLKELEERLEELE 374

Length = 908

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 263 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316
           +R ++  E  R S L +Q    +L+ ++  L  EN  L  EL+RL  E EKL S
Sbjct: 1   ERLEALEE--RNSELEEQ--IRQLELKLRDLEAENEKLERELERLKSELEKLKS 50

Length = 389

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
             RE +  + ++    +    R++K      L+  VE L  EN  L+ EL+ L  E EKL
Sbjct: 402 RPREKEGTEEEERREITVYEKRIKK------LEETVERLEEENSELKRELEELKREIEKL 455

Query: 315 TSENNSIKEDLS 326
            SE    + ++ 
Sbjct: 456 ESELERFRREVR 467

Length = 652

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 254 QDERELKRQKRKQSNRESARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECE 312
             E E +R+      R       + + + E  EL+  +E L  E   L  EL+R   E  
Sbjct: 408 GTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467

Query: 313 K 313
            
Sbjct: 468 D 468

Length = 652

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 258 ELKRQKRKQSNRESARRSRLRK----------QAECEELQARVETLSNENRNLRDELQRL 307
           +L+ Q  +  +     R R+++          + E   L   ++       +L DEL  L
Sbjct: 56  DLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAEL 115

Query: 308 SEECEKLTSENNSIKEDLSRL 328
            EE EKL  E   +KE L RL
Sbjct: 116 MEEIEKLEKEIEDLKERLERL 136

Length = 239

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 253 IQDERELKRQKRKQSNRESARRSRLRKQ-AECEELQARVETLSNENRNLRDELQRLSEEC 311
           + + ++  ++ +++ +   A   RL+K+ A  ++L A    L  ENR LR+EL  L +E 
Sbjct: 89  LAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENRELREELAELKQEN 148

Query: 312 EKLTSENNSIKEDLSR 327
           E L +EN  ++E+  R
Sbjct: 149 EALEAENERLQENEQR 164

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 257 RELKRQKRKQS-NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315
            +L+ Q  + S + ES        +   EEL++ +E L NE  +L + L  L  E E+L+
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900

Query: 316 SENNSIKEDLSRL 328
            E   ++   S L
Sbjct: 901 EELRELESKRSEL 913

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
PF07777	189	MFMR: G-box binding protein MFMR; InterPro: IPR012	100.0
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.49
smart00338	65	BRLZ basic region leucin zipper.	99.41
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.3
KOG3584	348	consensus cAMP response element binding protein an	99.25
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.2
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.12
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	99.12
KOG0837	279	consensus Transcriptional activator of the JUN fam	98.58
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.4
KOG4571	294	consensus Activating transcription factor 4 [Trans	98.33
KOG3119	269	consensus Basic region leucine zipper transcriptio	98.03
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.63
PF07777	189	MFMR: G-box binding protein MFMR; InterPro: IPR012	97.61
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	97.36
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.77
PRK13169	110	DNA replication intiation control protein YabA; Re	96.54
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.41
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.41
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	96.33
PRK10884	206	SH3 domain-containing protein; Provisional	96.29
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	96.18
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.18
PRK15422	79	septal ring assembly protein ZapB; Provisional	96.08
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.92
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	95.83
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	95.65
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	95.55
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	95.55
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.44
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	95.33
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	95.3
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	95.26
PRK10884	206	SH3 domain-containing protein; Provisional	95.24
PRK15422	79	septal ring assembly protein ZapB; Provisional	94.99
COG4467	114	Regulator of replication initiation timing [Replic	94.94
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	94.94
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	94.87
COG4026	290	Uncharacterized protein containing TOPRIM domain,	94.74
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	94.64
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	94.58
PRK02793	72	phi X174 lysis protein; Provisional	94.51
PRK00736	68	hypothetical protein; Provisional	94.48
PRK02119	73	hypothetical protein; Provisional	94.48
PRK04325	74	hypothetical protein; Provisional	94.47
PRK00295	68	hypothetical protein; Provisional	94.46
PRK04406	75	hypothetical protein; Provisional	94.25
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.18
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.16
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	94.02
KOG1962	216	consensus B-cell receptor-associated protein and r	93.88
PRK11637	428	AmiB activator; Provisional	93.77
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	93.57
PRK00846	77	hypothetical protein; Provisional	93.55
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.33
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	93.21
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.2
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.18
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	93.15
PRK13922	276	rod shape-determining protein MreC; Provisional	93.01
smart00338	65	BRLZ basic region leucin zipper.	92.94
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	92.84
PRK11637	428	AmiB activator; Provisional	92.68
COG4026	290	Uncharacterized protein containing TOPRIM domain,	92.53
KOG3119	269	consensus Basic region leucine zipper transcriptio	92.43
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	92.35
COG2433	652	Uncharacterized conserved protein [Function unknow	92.24
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	92.23
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	92.17
PRK04406	75	hypothetical protein; Provisional	92.08
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	92.05
KOG3335	181	consensus Predicted coiled-coil protein [General f	92.03
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.93
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	91.92
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	91.92
COG4942	420	Membrane-bound metallopeptidase [Cell division and	91.77
PRK10803	263	tol-pal system protein YbgF; Provisional	91.77
PRK13169	110	DNA replication intiation control protein YabA; Re	91.75
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	91.59
PRK02119	73	hypothetical protein; Provisional	91.59
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	91.56
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	91.5
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.45
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	91.4
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.34
PRK00888	105	ftsB cell division protein FtsB; Reviewed	91.11
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.06
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.04
KOG3650	120	consensus Predicted coiled-coil protein [General f	91.03
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	90.91
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	90.89
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	90.88
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	90.78
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	90.71
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.64
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	90.53
PRK02793	72	phi X174 lysis protein; Provisional	90.52
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	90.5
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	90.38
PF15294	278	Leu_zip: Leucine zipper	90.3
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	90.24
PRK00888	105	ftsB cell division protein FtsB; Reviewed	90.23
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	90.22
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	90.21
PF07412	200	Geminin: Geminin; InterPro: IPR022786 This family	90.17
PF07558	46	Shugoshin_N: Shugoshin N-terminal coiled-coil regi	90.13
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.13
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	90.11
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	90.02
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	89.98
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	89.83
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	89.77
COG4467	114	Regulator of replication initiation timing [Replic	89.72
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	89.61
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	89.55
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.52
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	89.37
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	89.35
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	89.33
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	89.28
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.24
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	89.1
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	88.99
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	88.99
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	88.92
PRK09039	343	hypothetical protein; Validated	88.52
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	88.41
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	88.38
PRK00846	77	hypothetical protein; Provisional	88.37
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	88.25
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	88.25
PF04999	97	FtsL: Cell division protein FtsL; InterPro: IPR007	88.22
PF14662	193	CCDC155: Coiled-coil region of CCDC155	88.22
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	88.08
PRK04325	74	hypothetical protein; Provisional	88.05
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	88.04
PF05103	131	DivIVA: DivIVA protein; InterPro: IPR007793 The Ba	88.03
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	87.85
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	87.82
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	87.76
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	87.75
PF10669	121	Phage_Gp23: Protein gp23 (Bacteriophage A118); Int	87.7
KOG1103	561	consensus Predicted coiled-coil protein [Function	87.54
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	87.5
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	87.4
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	87.37
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	87.29
KOG4571	294	consensus Activating transcription factor 4 [Trans	87.24
PRK00295	68	hypothetical protein; Provisional	87.14
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	87.1
PRK14162	194	heat shock protein GrpE; Provisional	86.85
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	86.8
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	86.78
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	86.62
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	86.38
KOG1318	411	consensus Helix loop helix transcription factor EB	86.32
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	86.32
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	86.29
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	86.25
KOG0971	1243	consensus Microtubule-associated protein dynactin	86.23
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	86.17
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	86.12
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	86.08
PRK10803	263	tol-pal system protein YbgF; Provisional	86.0
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	85.96
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	85.9
PRK14143	238	heat shock protein GrpE; Provisional	85.87
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	85.69
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	85.69
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	85.64
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	85.6
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	85.59
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	85.53
PRK14155	208	heat shock protein GrpE; Provisional	85.47
smart00340	44	HALZ homeobox associated leucin zipper.	85.33
PRK14158	194	heat shock protein GrpE; Provisional	85.3
PRK03992	389	proteasome-activating nucleotidase; Provisional	85.09
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	85.08
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	84.97
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	84.93
PRK10698	222	phage shock protein PspA; Provisional	84.7
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	84.67
PF08232	134	Striatin: Striatin family; InterPro: IPR013258 Thi	84.59
COG1792	284	MreC Cell shape-determining protein [Cell envelope	84.54
PF11500	152	Cut12: Spindle pole body formation-associated prot	84.49
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	84.43
PRK00736	68	hypothetical protein; Provisional	84.4
KOG0288	459	consensus WD40 repeat protein TipD [General functi	84.32
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	84.25
KOG2010	405	consensus Double stranded RNA binding protein [Gen	84.18
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	84.14
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	84.1
PF04871	136	Uso1_p115_C: Uso1 / p115 like vesicle tethering pr	84.09
KOG1962	216	consensus B-cell receptor-associated protein and r	84.06
KOG4797	123	consensus Transcriptional regulator [Transcription	84.05
PF06216	389	RTBV_P46: Rice tungro bacilliform virus P46 protei	83.87
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	83.79
PRK14148	195	heat shock protein GrpE; Provisional	83.74
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	83.68
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	83.64
KOG4001	259	consensus Axonemal dynein light chain [Cytoskeleto	83.64
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	83.47
PRK14160	211	heat shock protein GrpE; Provisional	83.43
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	83.39
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	83.36
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	83.35
PF15556	252	Zwint: ZW10 interactor	83.29
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	83.1
PRK09039	343	hypothetical protein; Validated	83.09
PRK14140	191	heat shock protein GrpE; Provisional	83.09
PF15058	200	Speriolin_N: Speriolin N terminus	82.98
TIGR03545	555	conserved hypothetical protein TIGR03545. This mod	82.67
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	82.61
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	82.56
PRK14127	109	cell division protein GpsB; Provisional	82.49
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	82.47
PF14662	193	CCDC155: Coiled-coil region of CCDC155	82.4
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	82.36
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	82.13
PF13118	126	DUF3972: Protein of unknown function (DUF3972)	82.03
COG2919	117	Septum formation initiator [Cell division and chro	81.97
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	81.97
KOG0971	1243	consensus Microtubule-associated protein dynactin	81.72
TIGR02231	525	conserved hypothetical protein. This family consis	81.3
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	81.27
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	81.26
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	81.14
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	81.01
PRK14153	194	heat shock protein GrpE; Provisional	80.94
PF08961	243	DUF1875: Domain of unknown function (DUF1875); Int	80.92
PRK14161	178	heat shock protein GrpE; Provisional	80.87
KOG0288	459	consensus WD40 repeat protein TipD [General functi	80.77
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	80.6
PF00038	312	Filament: Intermediate filament protein; InterPro:	80.6
PF04201	162	TPD52: Tumour protein D52 family; InterPro: IPR007	80.23
PRK05431	425	seryl-tRNA synthetase; Provisional	80.08
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	80.07
PRK14145	196	heat shock protein GrpE; Provisional	80.02

>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain

Probab=100.00  E-value=1e-63  Score=453.21  Aligned_cols=165  Identities=59%  Similarity=1.037  Sum_probs=153.4

Q ss_pred             CCCCCCCCccCCCCCCCCC-CCCCCCCCCCchhhhhhhhcCCCCCCCCCCCCCCCC-CCCCCccccCCCCCCCCCCCCCC
Q 018643            1 MGTGEENTSAKTAKTASST-QEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVAS-PTPHPYLWGSQHPLMPPYGTPVP   78 (352)
Q Consensus         1 Mg~~e~~~~~k~~k~~s~~-~~~~~~~~~pdW~~~mQAYy~~~~~pp~y~~s~va~-~~phPYmWg~q~~m~pPyGtp~P   78 (352)
                      ||++|++|++|.+|+++++ ++|+++++||||+ +|||||++| ++|+||+++||+ |+|||||||+||+||||||||||
T Consensus         1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs-~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~p   78 (189)
T PF07777_consen    1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWS-AMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVP   78 (189)
T ss_pred             CCCccCCcCCCCCCCCCCCcCCCCCCccCCccH-hhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCC
Confidence            9999999999999988864 5799999999999 599999999 889999999995 99999999999999999999999


Q ss_pred             CcccCCCCCcCCCCCCCC--------------CCCCCCCCCCC-CCCCCcccccccccccCCCCC-C----CCCCccccc
Q 018643           79 YQAIYPPGGVYAHPSMAT--------------TPTAAPTNTEP-EGKGPEAKDRASAKKSKGTPG-G----KAGEIVKAT  138 (352)
Q Consensus        79 Y~a~yp~GgvyaHP~mp~--------------~~~~~~~~~e~-~~k~~~~k~~~~~kk~Kg~~G-~----k~~~~gk~s  138 (352)
                      |+||||||||||||+||+              ++..+++++|+ ++|++++|||+++|||||+|| +    ||++++|++
T Consensus        79 Y~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~  158 (189)
T PF07777_consen   79 YPAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTS  158 (189)
T ss_pred             CccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCccc
Confidence            999999999999999996              23357889999 599999999999999999994 3    889999999


Q ss_pred             cCCCCCCCcccccCCCCCCCCCCCcCccc
Q 018643          139 SGSGNDGVSQSAESGSDGSSDASDENGNQ  167 (352)
Q Consensus       139 ~gs~~~~~s~S~esgsegSsdgsd~ns~~  167 (352)
                      ++++|++.|||+|||+||||||||+|+++
T Consensus       159 ~~s~n~~~Sqs~eSgsegSSdgSD~Nt~~  187 (189)
T PF07777_consen  159 GSSANDGSSQSSESGSEGSSDGSDGNTNN  187 (189)
T ss_pred             cCCCCCccCccccccccccccCcCccccC
Confidence            99999999999999999999999999875

It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.49  E-value=1.8e-13  Score=104.46  Aligned_cols=64  Identities=50%  Similarity=0.738  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN  319 (352)
Q Consensus       256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~  319 (352)
                      |.+.|+++|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|..++..|..+|.
T Consensus         1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~   64 (64)
T PF00170_consen    1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH   64 (64)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4567899999999999999999999999999999999999999999999999999999999874

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>smart00338 BRLZ basic region leucin zipper

Probab=99.41  E-value=1.5e-12  Score=99.66  Aligned_cols=61  Identities=54%  Similarity=0.746  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN  319 (352)
Q Consensus       259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~  319 (352)
                      .|+.||+++||+||++||.||++|+.+|+.++..|+.+|..|+.++..|..++..|+.++.
T Consensus         4 ~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338        4 EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999999999999999888888888887764

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.30  E-value=2.5e-11  Score=114.58  Aligned_cols=81  Identities=35%  Similarity=0.450  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018643          257 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN  336 (352)
Q Consensus       257 re~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~  336 (352)
                      +|.|-+|||++||.+|+-+|.|||+++++|+.++..|.+||+.|+.+.+.|+...+.|..+|.+|..+|+.+.  +.|.+
T Consensus        66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~--~~l~~  143 (292)
T KOG4005|consen   66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR--QELAE  143 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHh
Confidence            4557899999999999999999999999999999999999999999999999999999999999999999887  55555


Q ss_pred             hhh
Q 018643          337 LEQ  339 (352)
Q Consensus       337 L~~  339 (352)
                      |.+
T Consensus       144 ~~~  146 (292)
T KOG4005|consen  144 LKQ  146 (292)
T ss_pred             hHH
Confidence            554

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.25  E-value=1.8e-11  Score=118.05  Aligned_cols=62  Identities=35%  Similarity=0.421  Sum_probs=56.7

Q ss_pred             cchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          250 DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC  311 (352)
Q Consensus       250 ~~~~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~  311 (352)
                      ..-..||.-+||+-|.++|||+||.||+|||+|+.+||.||..||.+|..|-+||..|++-|
T Consensus       281 p~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY  342 (348)
T KOG3584|consen  281 PTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY  342 (348)
T ss_pred             CCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence            34467899999999999999999999999999999999999999999999999999887654

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.20  E-value=5.5e-11  Score=122.20  Aligned_cols=71  Identities=39%  Similarity=0.468  Sum_probs=68.0

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE  323 (352)
Q Consensus       253 ~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  323 (352)
                      ..|.+-.||+.|+++|||+|..||+|||+|++.||.++..|.+||+.|+.|...|++++..|..||..|+-
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv  344 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV  344 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence            46889999999999999999999999999999999999999999999999999999999999999998873

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.12  E-value=3.9e-10  Score=83.72  Aligned_cols=50  Identities=50%  Similarity=0.747  Sum_probs=45.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE  310 (352)
Q Consensus       260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e  310 (352)
                      ++.||+ +||+||++||.||++++++|+.+|..|+.+|..|+.+|..|+.|
T Consensus         5 ~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    5 KRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            466777 99999999999999999999999999999999999999888764

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=99.12  E-value=9.4e-11  Score=119.09  Aligned_cols=76  Identities=28%  Similarity=0.431  Sum_probs=66.2

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       254 ~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .+|+.+||.|||++|++||+.||+|||+|++.||.+|....+||++|++++..|+.++..|.++.+.|...+....
T Consensus       245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~a  320 (472)
T KOG0709|consen  245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVA  320 (472)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcc
Confidence            5899999999999999999999999999999999999999999999999998777777777766666666555443

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=98.58  E-value=2.3e-07  Score=88.85  Aligned_cols=68  Identities=31%  Similarity=0.477  Sum_probs=59.1

Q ss_pred             CcchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          249 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS  316 (352)
Q Consensus       249 ~~~~~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~  316 (352)
                      .+-.+.++..+|-+|.+++|||+|++||.||.+++.+||++|..|..+|..|-.++..|++...+++.
T Consensus       195 spid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~  262 (279)
T KOG0837|consen  195 SPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQ  262 (279)
T ss_pred             CcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            33456778888888889999999999999999999999999999999999999999888776666554

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.40  E-value=4.3e-09  Score=86.11  Aligned_cols=68  Identities=32%  Similarity=0.485  Sum_probs=56.4

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI  321 (352)
Q Consensus       254 ~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L  321 (352)
                      .+..++|..||+.+||.+|+.||.||.+++++|+.++..|+.+...|..++..|..++..|+..+..|
T Consensus        24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L   91 (92)
T PF03131_consen   24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL   91 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45567799999999999999999999999999999999888888888888877777666665555544

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=98.33  E-value=1.9e-06  Score=83.80  Aligned_cols=56  Identities=32%  Similarity=0.480  Sum_probs=48.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS  316 (352)
Q Consensus       261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~  316 (352)
                      ..|.+++|+.+|-|+|+||+++.|.|..+++.|+.+|++||.++..|.+|+..|+.
T Consensus       228 ~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq  283 (294)
T KOG4571|consen  228 LRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ  283 (294)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445778888999999999999999999999999999999999888777777664

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=98.03  E-value=1.9e-05  Score=76.29  Aligned_cols=59  Identities=29%  Similarity=0.452  Sum_probs=49.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN  319 (352)
Q Consensus       261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~  319 (352)
                      ...|+.+|-+++||||.+++...+++..||..|+.||+.|+.+|..|+.++..|+.-..
T Consensus       195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~  253 (269)
T KOG3119|consen  195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL  253 (269)
T ss_pred             HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456679999999999999999999999999999999999999777666666654433

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.63  E-value=0.00052  Score=60.14  Aligned_cols=67  Identities=27%  Similarity=0.436  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          257 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       257 re~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      -.+|..||-++||=-|.-||-|+-..-++||       .++..|..+|+.|++++..|..|...|+.++.+|..
T Consensus        50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE-------~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~  116 (135)
T KOG4196|consen   50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELE-------KEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN  116 (135)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456667779999999999999987766665       556666677777777777778888888888888764

>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain

Probab=97.61  E-value=0.0003  Score=65.12  Aligned_cols=122  Identities=22%  Similarity=0.349  Sum_probs=68.4

Q ss_pred             chhhhhhhhcCCCCCCCCCCCCCCCCCCCCCccccCCCCCC-CCCCCCCCCcccCCCCCcCCCCCCCC--CC--CC----
Q 018643           30 DWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLM-PPYGTPVPYQAIYPPGGVYAHPSMAT--TP--TA----  100 (352)
Q Consensus        30 dW~~~mQAYy~~~~~pp~y~~s~va~~~phPYmWg~q~~m~-pPyGtp~PY~a~yp~GgvyaHP~mp~--~~--~~----  100 (352)
                      |=. ....|.- =...=.||.+.    ++||||-   ..|+ .|  +||||+    ||.  +||+||+  +|  .+    
T Consensus        22 ~~~-~~~~ypD-Ws~mQAYyg~~----~~p~~f~---s~va~sp--~phPYM----WG~--~q~mmPPYGtP~pY~A~Yp   84 (189)
T PF07777_consen   22 DQP-TPHVYPD-WSAMQAYYGPG----APPPYFN---SAVASSP--QPHPYM----WGP--QQPMMPPYGTPVPYPAMYP   84 (189)
T ss_pred             CCC-CCccCCc-cHhhhhccCCC----CCCcccC---cccCCCC--CCCCcc----cCC--CccccCCCCCCCCCccccC
Confidence            444 3666643 22345688873    7789987   3343 34  789999    999  9999986  22  11    


Q ss_pred             -----CCCC---------------CCCCCCCCcccccccccccCCCCCCCCCCccccccCCCC-C-CCcccccCCCCCCC
Q 018643          101 -----APTN---------------TEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGN-D-GVSQSAESGSDGSS  158 (352)
Q Consensus       101 -----~~~~---------------~e~~~k~~~~k~~~~~kk~Kg~~G~k~~~~gk~s~gs~~-~-~~s~S~esgsegSs  158 (352)
                           +..+               +++.+....+.|-.+   .|.+++ |+....|+++|... - ..-+.+++++....
T Consensus        85 hGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p---~Kss~~-kd~~~~KksKg~~g~~a~s~~n~~~gk~~~~  160 (189)
T PF07777_consen   85 HGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDP---GKSSGN-KDKGSMKKSKGFDGGLAMSIKNGESGKTSGS  160 (189)
T ss_pred             CCccccCCCCCcccccCCCcccccccccCCCCccccccc---ccCcCc-cccccccccccccccceeeccCCccCccccC
Confidence                 1111               122222222222111   133333 55555677777653 1 23356677777777


Q ss_pred             CCCCcCcccccccc
Q 018643          159 DASDENGNQQEFAR  172 (352)
Q Consensus       159 dgsd~ns~~~~s~~  172 (352)
                      .++|+.++..++++
T Consensus       161 s~n~~~Sqs~eSgs  174 (189)
T PF07777_consen  161 SANDGSSQSSESGS  174 (189)
T ss_pred             CCCCccCccccccc
Confidence            77888887666665

It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=97.36  E-value=0.00034  Score=74.15  Aligned_cols=70  Identities=21%  Similarity=0.306  Sum_probs=57.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc
Q 018643          260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED-LSRLC  329 (352)
Q Consensus       260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~-L~~l~  329 (352)
                      |-.||+=+||.||++||+||..-|..||..|+.|+.|-++|.+|-..+...+..++.+...|-.+ +..|+
T Consensus       490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lr  560 (604)
T KOG3863|consen  490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLR  560 (604)
T ss_pred             hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567889999999999999999999999999999999998888888777777777777777544 33343

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.77  E-value=0.0067  Score=51.55  Aligned_cols=50  Identities=30%  Similarity=0.436  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      +.+.+|+.++..|..+...|+.++..|-+|+..|+.||..|+++|..+..
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56789999999999999999999999999999999999999999999864

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.54  E-value=0.012  Score=50.36  Aligned_cols=49  Identities=29%  Similarity=0.396  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      ..+.+|++++..|..+...|+..+..|-+|+..|+.||..|+++|..+.
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~   56 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE   56 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4578899999999999999999999999999999999999999999873

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.41  E-value=0.022  Score=45.26  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEE  310 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e  310 (352)
                      ++.|+.+|..+-..+..|+.++..|+++
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~   33 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEK   33 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444333333333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.41  E-value=0.01  Score=53.88  Aligned_cols=52  Identities=23%  Similarity=0.312  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018643          289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP  342 (352)
Q Consensus       289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~  342 (352)
                      ....|+.||..|+.++..|+++++.|+.||..|..++..+.  ++-..|..+++
T Consensus        98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~--eDY~~L~~Im~  149 (161)
T TIGR02894        98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE--EDYQTLIDIMD  149 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            45667778888888888888888888888888888777776  56666665554

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.33  E-value=0.018  Score=45.87  Aligned_cols=56  Identities=29%  Similarity=0.354  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS  340 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~  340 (352)
                      +.-|+-+|+.|+.+|..|..++..++...+.|+.||.+|+.+-....  +.++.|+-.
T Consensus        20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ--erlrsLLGk   75 (79)
T COG3074          20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ--ERLRALLGK   75 (79)
T ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhh
Confidence            44566777778888888888777777777777777777777655554  555555543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=96.29  E-value=0.057  Score=50.69  Aligned_cols=47  Identities=13%  Similarity=0.248  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      ++.+++++..+..|+++|..|+.++..++.+.+.|+.+|..|+..+.
T Consensus       124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~  170 (206)
T PRK10884        124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII  170 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666677777777777777777777777777777777776544

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=96.18  E-value=0.029  Score=45.52  Aligned_cols=48  Identities=31%  Similarity=0.419  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      -++|.+++..|+.....|..+++.++++|+.|+.||.-|..-|..|..
T Consensus        18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~   65 (80)
T PF10224_consen   18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS   65 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788899999999999999999999999999999999999999853

The exact function is unknown.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.18  E-value=0.035  Score=43.47  Aligned_cols=57  Identities=30%  Similarity=0.405  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  339 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~  339 (352)
                      +.++.|=..++.|+.||..|+.++..+..+...|...|..-+.+|+.|-  ..+..|++
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI--~RLk~leq   63 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI--TRLKALEQ   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhhcc
Confidence            3466677777777778888888887777777777777777777777765  44554443

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=96.08  E-value=0.031  Score=45.31  Aligned_cols=58  Identities=29%  Similarity=0.343  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN  341 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~  341 (352)
                      .+.-|+.+|+.|+.+|..|..++..++.....|+.||..|+.+.....  ++|+.|.-.+
T Consensus        19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq--erLr~LLGkm   76 (79)
T PRK15422         19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALLGRM   76 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHhh
Confidence            455566777777777777777777766666667777777777666655  6666655443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.92  E-value=0.056  Score=42.98  Aligned_cols=47  Identities=36%  Similarity=0.464  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .+.-|+.+++.|+.+|..|..+...|+.++++|+.|-..+..+|..|
T Consensus        19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen   19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=95.83  E-value=0.089  Score=50.78  Aligned_cols=89  Identities=25%  Similarity=0.284  Sum_probs=64.3

Q ss_pred             cchhhhHHHHHH-HHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          250 DQWIQDERELKR-QKRKQ-----SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE  323 (352)
Q Consensus       250 ~~~~~DEre~KR-~RRk~-----~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  323 (352)
                      ++...+|+-.|| .|-+.     +.|.-||-  ..=..++.+|.++-+.|+.||+.|+.+...|-.+..+|..+...|++
T Consensus        62 ~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm--~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~  139 (292)
T KOG4005|consen   62 DHLSWEEKVQRRKLKNRVAAQTARDRKKARM--EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQ  139 (292)
T ss_pred             cccCHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344456665554 44343     23333333  22234578999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcchhhchhhc
Q 018643          324 DLSRLCGPEAVANLEQS  340 (352)
Q Consensus       324 ~L~~l~g~~~~~~L~~~  340 (352)
                      +|..+......-++-..
T Consensus       140 ~l~~~~~~~~~~~~v~e  156 (292)
T KOG4005|consen  140 ELAELKQQQQHNTRVIE  156 (292)
T ss_pred             HHHhhHHHHHHhhHHHh
Confidence            99998776665555443

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.65  E-value=0.066  Score=42.73  Aligned_cols=53  Identities=36%  Similarity=0.453  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  331 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~  331 (352)
                      =|-++++|..+-..|..|...++...+.|.++.++|+.|..-+.++|+.|-|.
T Consensus        23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk   75 (79)
T COG3074          23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK   75 (79)
T ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46789999999999999999999999999999999999999999999998764

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=95.55  E-value=0.061  Score=56.18  Aligned_cols=49  Identities=20%  Similarity=0.264  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      ...++||++++.|+.|.+.|.++...++++++.|+.||.+|+.+++.+.
T Consensus        76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~  124 (475)
T PRK13729         76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG  124 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3678999999999999999999999999999999999999999996543

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=95.55  E-value=0.036  Score=40.33  Aligned_cols=38  Identities=21%  Similarity=0.413  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       292 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +|+.+...|+...+.|+.+++.|..||..|++++..|.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~   39 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK   39 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555666666666666666666666666666666654

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.44  E-value=0.19  Score=46.10  Aligned_cols=72  Identities=22%  Similarity=0.200  Sum_probs=55.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643          261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE  332 (352)
Q Consensus       261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~  332 (352)
                      +.++....+..-+.-......++.+++.-++.|+.|...|.-++..|..++..|+.||..|-+++.+..+.+
T Consensus       117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~e  188 (194)
T PF08614_consen  117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQE  188 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444545556667788888889999999999999999999999999999999999988776543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=95.33  E-value=0.082  Score=41.42  Aligned_cols=47  Identities=21%  Similarity=0.190  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +..|+.+|+.|-..+..|+.+...|+.+...+..|+..|.++...-.
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar   48 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR   48 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999887654

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=95.30  E-value=0.36  Score=39.68  Aligned_cols=75  Identities=21%  Similarity=0.329  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       255 DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      -+.-++|..+++.+=|++=..|.-+.....+|+.+++.|......|-.+|.....+|..|+.-|.++..+|....
T Consensus         6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~   80 (89)
T PF13747_consen    6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI   80 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355577888888888888888888888889999999999999999999999999999999999999999998764

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=95.26  E-value=0.095  Score=40.94  Aligned_cols=51  Identities=18%  Similarity=0.287  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      .+++++||.++..++.-++.|-..|.....++..|+.+...|..+|..+..
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   53 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED   53 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            367899999999999999999999999999999999999999999999863

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.24  E-value=0.25  Score=46.39  Aligned_cols=54  Identities=15%  Similarity=0.118  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE  332 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~  332 (352)
                      -+++..+|+++++.++.+...|..++..|++++..++.|+..|+.++..+....
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447778888888889999999999999999999999999999999988887433

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=94.99  E-value=0.13  Score=41.83  Aligned_cols=51  Identities=33%  Similarity=0.462  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      |-++++|..+-..|..++..++..-..|.+++++|+.|...+.++|..|-|
T Consensus        24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG   74 (79)
T PRK15422         24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888999999999999998888888888999999998888888888765

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=94.94  E-value=0.11  Score=44.61  Aligned_cols=47  Identities=28%  Similarity=0.407  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      ..+..|+.++-.|-++...|++.+..|-+|+..|+.||..|+++|..
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            45788999999999999999999999999999999999999999988

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=94.94  E-value=0.038  Score=50.48  Aligned_cols=50  Identities=26%  Similarity=0.367  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN  336 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~  336 (352)
                      |++||.++.+--++|.-|..||    .|.+.|+.++++||.+|.+|...-.|.+
T Consensus         2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~e   51 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQE   51 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888888888888888887    4456666666666666666654444433

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=94.87  E-value=0.0011  Score=67.33  Aligned_cols=68  Identities=32%  Similarity=0.391  Sum_probs=58.8

Q ss_pred             hhhhHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          252 WIQDERELKRQKRKQSNRESARR---SRLRKQAECEELQARVETLS-NENRNLRDELQRLSEECEKLTSENN  319 (352)
Q Consensus       252 ~~~DEre~KR~RRk~~NRESARr---SR~RKq~~~eeLe~kv~~Le-~EN~~Lr~el~~L~~e~~~L~~EN~  319 (352)
                      .+..+.+.||.+|+++|+.+|.+   ||.|++....+|+.+|+.|+ .++..|..+|..|+++.+.|+.+..
T Consensus       146 ~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~  217 (395)
T KOG1414|consen  146 VLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELN  217 (395)
T ss_pred             CCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHh
Confidence            35577778899999999999999   99999999999999999999 9999988888777777777665543

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=94.74  E-value=0.18  Score=48.43  Aligned_cols=50  Identities=34%  Similarity=0.455  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      ..++++..+-+.|..++..|..+++.+++++..|+.||.+|.+.+..+.+
T Consensus       142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~  191 (290)
T COG4026         142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG  191 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence            33455555555666666666666677777777888888888888887764

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=94.64  E-value=0.12  Score=37.51  Aligned_cols=42  Identities=31%  Similarity=0.461  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      .||+..+.|+.....|+.+...|..+.+.|+.|...|+..|.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            478888888888888888888888889999999999988774

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=94.58  E-value=0.3  Score=43.18  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          298 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .+|..+-..|.++++.|..||.+++-++..+.
T Consensus        77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k  108 (135)
T KOG4196|consen   77 HELEKEKAELQQQVEKLKEENSRLRRELDAYK  108 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666666777777777777777777776665

>PRK02793 phi X174 lysis protein; Provisional

Probab=94.51  E-value=0.26  Score=39.03  Aligned_cols=50  Identities=20%  Similarity=0.152  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .+++.+||.++..++.-+..|-..|...+.++..|+.+...|..+|..+.
T Consensus         7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   56 (72)
T PRK02793          7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ   56 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            36789999999999999999999999999999999999999999998875

>PRK00736 hypothetical protein; Provisional

Probab=94.48  E-value=0.28  Score=38.44  Aligned_cols=49  Identities=20%  Similarity=0.273  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +++++||.++..++.-++.|-..|....+++..|+.+...|.++|..+.
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4599999999999999999999999999999999999999999998875

>PRK02119 hypothetical protein; Provisional

Probab=94.48  E-value=0.27  Score=39.09  Aligned_cols=50  Identities=14%  Similarity=0.153  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .+++.+||.++..++.-+..|-..|...++++..|+.+...|..+|..+.
T Consensus         8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46788999999999999999999999999999999999999999998875

>PRK04325 hypothetical protein; Provisional

Probab=94.47  E-value=0.28  Score=38.99  Aligned_cols=49  Identities=10%  Similarity=0.124  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +++++||.++..++.-++.|-..|...+.++..|+.+...|..+|..+.
T Consensus         9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~   57 (74)
T PRK04325          9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN   57 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4589999999999999999999999999999999999999999998875

>PRK00295 hypothetical protein; Provisional

Probab=94.46  E-value=0.29  Score=38.36  Aligned_cols=49  Identities=16%  Similarity=0.199  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +++++||.++..++.-++.|-..|...++++..|+.+...|..+|..+.
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4599999999999999999999999999999999999999999999875

>PRK04406 hypothetical protein; Provisional

Probab=94.25  E-value=0.33  Score=38.81  Aligned_cols=49  Identities=10%  Similarity=0.153  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +++.+||.++..++.-++.|-..|...++++..|+.+...|..+|..+.
T Consensus        11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406         11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5788889999998888999999999999999999999998988888775

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.18  E-value=0.68  Score=40.59  Aligned_cols=69  Identities=25%  Similarity=0.313  Sum_probs=44.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +..|-...||..-....++...++.|+..++.|+.+++.+..++..++.+...|..++..+...+....
T Consensus        46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k  114 (151)
T PF11559_consen   46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK  114 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445566666666677777777777777777777777777666666666666666655555555443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.16  E-value=0.81  Score=40.81  Aligned_cols=66  Identities=32%  Similarity=0.329  Sum_probs=53.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          264 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       264 Rk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      ..+.|++.+-+--+-++++|+.|+.++..+..+...|..+|..|+.+...|..+....+.++..|.
T Consensus        35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE  100 (140)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788888887888888888888888888888888888888888888888888888877777775

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR00219 mreC rod shape-determining protein MreC

Probab=94.02  E-value=0.11  Score=50.59  Aligned_cols=40  Identities=35%  Similarity=0.450  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 018643          289 RVETLSNENRNLRDELQRLSEECE----KLTSENNSIKEDLSRL  328 (352)
Q Consensus       289 kv~~Le~EN~~Lr~el~~L~~e~~----~L~~EN~~Lk~~L~~l  328 (352)
                      .+..|++||++|+.|+..|+.+.+    .|+.||++|++.|.--
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~  110 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP  110 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            455677788888887766644444    3899999999877654

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=93.88  E-value=0.35  Score=45.98  Aligned_cols=51  Identities=20%  Similarity=0.356  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      .+.+.++++.+.+++.++.++..|+++.+.+..|+..|..|++.|++++..
T Consensus       161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~  211 (216)
T KOG1962|consen  161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES  211 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence            344556666777777888888889999999999999999999999988864

>PRK11637 AmiB activator; Provisional

Probab=93.77  E-value=0.82  Score=46.61  Aligned_cols=53  Identities=11%  Similarity=0.194  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      ..-+.+++.|+.++..++.+...+..+|..++.++..|..+...|+.+|..+.
T Consensus        71 ~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~  123 (428)
T PRK11637         71 ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE  123 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666666666666666666666666666666666666665555543

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=93.57  E-value=0.32  Score=41.42  Aligned_cols=53  Identities=30%  Similarity=0.446  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  339 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~  339 (352)
                      +|=.++..|++....|..++..|+..+..|..||.+|+-+...|+  +.|..+.+
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr--~~l~~~~~   57 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR--ERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence            466778888888999999999999999999999999998888887  66666655

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK00846 hypothetical protein; Provisional

Probab=93.55  E-value=0.53  Score=38.08  Aligned_cols=50  Identities=18%  Similarity=0.181  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .+++++||.++...+.-.+.|-..|...+..+..|+.+...|.++|+.+.
T Consensus        12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846         12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46788999999999999999999999999999999999999999998886

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.33  E-value=1.1  Score=42.27  Aligned_cols=50  Identities=28%  Similarity=0.375  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      ...+.++++++.++..|+.+.+.++.++..+++++..++.++...+..|.
T Consensus        59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555566666666666666666666655555555555555444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=93.21  E-value=0.95  Score=44.37  Aligned_cols=61  Identities=23%  Similarity=0.319  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEE-----------CEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT  343 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e-----------~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~  343 (352)
                      .++.+|+.+...|+.+|+.|+-++..++++           ...|+.+|.++++.+..|+  ..|+.|+|-+|.
T Consensus        52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~--kyiReLEQaNDd  123 (333)
T KOG1853|consen   52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLR--KYIRELEQANDD  123 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccH
Confidence            344555555666666666666666666553           3467888888988888888  889999998876

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.20  E-value=0.48  Score=51.93  Aligned_cols=41  Identities=29%  Similarity=0.410  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  324 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~  324 (352)
                      |.+.+++.+|+.|...|+.++...++++..|+.|...|+..
T Consensus       541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667888888888888888888888888888777766654

; GO: 0016021 integral to membrane

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.18  E-value=0.64  Score=51.43  Aligned_cols=12  Identities=25%  Similarity=0.379  Sum_probs=5.6

Q ss_pred             hhhhcCCCCCCC
Q 018643           35 MQAFYGAGATPP   46 (352)
Q Consensus        35 mQAYy~~~~~pp   46 (352)
                      +|.|-=|.+.||
T Consensus        82 LqG~~lP~~LPP   93 (1118)
T KOG1029|consen   82 LQGIQLPPVLPP   93 (1118)
T ss_pred             hcCCcCCCCCCh
Confidence            355544444444

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=93.15  E-value=0.35  Score=46.64  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .+||+|+..+..++..|+.|++.|+.+|..|-++++=|+
T Consensus        96 ~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq  134 (248)
T PF08172_consen   96 AELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ  134 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444445555555556666778888888888887664

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=93.01  E-value=0.64  Score=44.50  Aligned_cols=41  Identities=32%  Similarity=0.417  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 018643          288 ARVETLSNENRNLRDELQRLSEECE---KLTSENNSIKEDLSRL  328 (352)
Q Consensus       288 ~kv~~Le~EN~~Lr~el~~L~~e~~---~L~~EN~~Lk~~L~~l  328 (352)
                      .....|.+||..|++|+..|+.+..   .|+.||.+|++.|.-.
T Consensus        69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~  112 (276)
T PRK13922         69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK  112 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            4445556666666666666655555   7789999999877643

>smart00338 BRLZ basic region leucin zipper

Probab=92.94  E-value=0.94  Score=34.43  Aligned_cols=40  Identities=33%  Similarity=0.493  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      ...+..|+.+...|..++..|..++..|+.|+..|+.++.
T Consensus        25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338       25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567777777777888888888888888888877777653

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=92.84  E-value=1.1  Score=47.89  Aligned_cols=63  Identities=27%  Similarity=0.380  Sum_probs=31.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          266 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       266 ~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ++......+....-+.+++.|+..+...+.++..|+.+...|....+.|..|+..|+.++.++
T Consensus       156 ~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~  218 (546)
T PF07888_consen  156 LKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA  218 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444445555555555555555555555555555555555555554444444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11637 AmiB activator; Provisional

Probab=92.68  E-value=1.3  Score=45.22  Aligned_cols=46  Identities=13%  Similarity=0.227  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  325 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L  325 (352)
                      ...+..++.++..++.+...+..+|..|+.++..++.+...++..|
T Consensus        81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555555555555554444444433

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=92.53  E-value=0.55  Score=45.24  Aligned_cols=42  Identities=29%  Similarity=0.445  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      +|..+++.+..|+..|+.+++.|+.+++.++.+..+|..++.
T Consensus       139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s  180 (290)
T COG4026         139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS  180 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444433333

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=92.43  E-value=0.57  Score=45.52  Aligned_cols=47  Identities=19%  Similarity=0.263  Sum_probs=24.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK  313 (352)
Q Consensus       267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~  313 (352)
                      +-|..+|+--..-+.++.+|+.+.+.|+.++.+|+.++..|+.-+..
T Consensus       208 kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~  254 (269)
T KOG3119|consen  208 KSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ  254 (269)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444444444555556666666666666666666555554433

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=92.35  E-value=1.8  Score=41.82  Aligned_cols=40  Identities=20%  Similarity=0.354  Sum_probs=20.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL  304 (352)
Q Consensus       265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el  304 (352)
                      .+.-.+.+++.=.-++.++++|+.+|..++.+...++.++
T Consensus        36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~   75 (239)
T COG1579          36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI   75 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444555555555555555555555544443

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.24  E-value=0.48  Score=50.97  Aligned_cols=46  Identities=35%  Similarity=0.526  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      .++..|+.+|+.|+.||..|+.++.+|+.+++.|+++..+++.++.
T Consensus       422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~  467 (652)
T COG2433         422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR  467 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677778888888888888888888777777777777776654

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=92.23  E-value=0.35  Score=37.26  Aligned_cols=24  Identities=42%  Similarity=0.717  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          283 CEELQARVETLSNENRNLRDELQR  306 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~  306 (352)
                      +.+|+.+++.|+.+|..|+.++..
T Consensus        26 i~~l~~~i~~l~~e~~~L~~ei~~   49 (80)
T PF04977_consen   26 IAELQKEIEELKKENEELKEEIER   49 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443333

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=92.17  E-value=0.55  Score=37.03  Aligned_cols=45  Identities=27%  Similarity=0.473  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643          295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  339 (352)
Q Consensus       295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~  339 (352)
                      .....+..++..++.+...|+.||.+|+.++..|..++.+..+-.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar   68 (85)
T TIGR02209        24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAK   68 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            344455566666666666666667777777666666666555433

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PRK04406 hypothetical protein; Provisional

Probab=92.08  E-value=1.3  Score=35.36  Aligned_cols=55  Identities=13%  Similarity=0.253  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  339 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~  339 (352)
                      ++.|+.|+..|+.....+..-|+.|.+.+.....+...|+.+|..|.  +.+..+..
T Consensus         6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~~   60 (75)
T PRK04406          6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV--GKVKNMDS   60 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcc
Confidence            45799999999999999999999999999999999999999999996  66666654

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=92.05  E-value=0.6  Score=49.67  Aligned_cols=70  Identities=26%  Similarity=0.248  Sum_probs=48.0

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643          253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE  332 (352)
Q Consensus       253 ~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~  332 (352)
                      ..-+.+.|-.||.|           |+-...|...+....-++-...|..+|..|..||++|+.||..||.+|..|....
T Consensus       271 p~~~~d~kv~krqQ-----------RmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En  339 (655)
T KOG4343|consen  271 PNVGSDIKVLKRQQ-----------RMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSEN  339 (655)
T ss_pred             CCCccCHHHHHHHH-----------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence            34567777776654           2222223334444444556677899999999999999999999999999987644


Q ss_pred             h
Q 018643          333 A  333 (352)
Q Consensus       333 ~  333 (352)
                      .
T Consensus       340 ~  340 (655)
T KOG4343|consen  340 Q  340 (655)
T ss_pred             c
Confidence            3

>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]

Probab=92.03  E-value=0.21  Score=46.16  Aligned_cols=43  Identities=33%  Similarity=0.431  Sum_probs=27.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS  308 (352)
Q Consensus       260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~  308 (352)
                      +|.+|++++++      +..++++++|+.+++.|+.+.++|+..+..|-
T Consensus        91 ~R~~~~e~~ke------e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~  133 (181)
T KOG3335|consen   91 WRQARKERKKE------EKRKQEIMELRLKVEKLENAIAELTKFFSQLH  133 (181)
T ss_pred             HHhhhcchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36677766663      55567777888877777775555555555544

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.93  E-value=2.7  Score=39.91  Aligned_cols=52  Identities=23%  Similarity=0.287  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ..-+++++.|+.+++.|+..|..|...+..+++++..|..+...+...-..+
T Consensus        52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l  103 (251)
T PF11932_consen   52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL  103 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445566666667777777777776666666666666666666555443333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=91.92  E-value=2.1  Score=32.45  Aligned_cols=37  Identities=30%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  324 (352)
Q Consensus       288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~  324 (352)
                      ..+..|+.++..|..++..|..++..|..++..|+.+
T Consensus        26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e   62 (64)
T PF00170_consen   26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE   62 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4455555555555555555555555555555555544

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=91.92  E-value=0.49  Score=49.58  Aligned_cols=36  Identities=19%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      |+.+..+|.++.+.|+++.++|+.....|..+|..+
T Consensus       107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~  142 (472)
T TIGR03752       107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV  142 (472)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334555555566666666666666666666665443

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=91.77  E-value=1.4  Score=45.66  Aligned_cols=73  Identities=19%  Similarity=0.256  Sum_probs=59.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643          260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE  332 (352)
Q Consensus       260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~  332 (352)
                      +|++-.+++=+...+.....+++...|+.++..|+.++..|..+|......+..++..+..+...|..|..+.
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4555555666666666677778889999999999999999999999999999999999998888888887765

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=91.77  E-value=1.4  Score=42.66  Aligned_cols=47  Identities=15%  Similarity=0.219  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      -+.+|..+++.|+.|+..||-+|+.+..++++|....+.|-..|..+
T Consensus        55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r  101 (263)
T PRK10803         55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL  101 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888888888888888888888888888888777777776664

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=91.75  E-value=0.78  Score=39.37  Aligned_cols=51  Identities=24%  Similarity=0.335  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhch
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL  337 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L  337 (352)
                      +|=.++..|+.....|..++..|+..+..|..||.+|+.+-..|+  +.|..+
T Consensus         5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr--~~l~~~   55 (110)
T PRK13169          5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLR--ERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence            455677778888888888888888888888888888887777776  555555

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=91.59  E-value=1.3  Score=34.92  Aligned_cols=48  Identities=31%  Similarity=0.448  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          281 AECEELQARVETLSNENRNLRDE-------LQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~e-------l~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .+++.|.+++...+.+|..|+.+       |...-.++..|+.||..|+.+|..+
T Consensus        12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen   12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555555555555554       4445555555555555555555443

>PRK02119 hypothetical protein; Provisional

Probab=91.59  E-value=1.6  Score=34.72  Aligned_cols=57  Identities=12%  Similarity=0.162  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS  340 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~  340 (352)
                      ++..|+.|+..|+.....+..-|+.|...+.....+...|+.+|..|.  +.+..+...
T Consensus         3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~--~rl~~~~~~   59 (73)
T PRK02119          3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA--NKLKDMQPS   59 (73)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccc
Confidence            567899999999999999999999999999999999999999999997  667666543

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=91.56  E-value=2.4  Score=39.92  Aligned_cols=55  Identities=22%  Similarity=0.294  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          275 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       275 SR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      -+.||...++ ...++..|+.+-..|..++-.+...|..|+.|..+|+.+...+..
T Consensus       163 N~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~  217 (221)
T PF05700_consen  163 NRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE  217 (221)
T ss_pred             HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455554444 678888999999999999999999999999999999999887753

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.50  E-value=1.6  Score=48.56  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Q 018643          307 LSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       307 L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      |+.+...|..|...|..+|..|.
T Consensus       435 ~nak~~ql~~eletLn~k~qqls  457 (1118)
T KOG1029|consen  435 LNAKKKQLQQELETLNFKLQQLS  457 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444444444444444443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.45  E-value=0.72  Score=41.25  Aligned_cols=52  Identities=33%  Similarity=0.431  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          279 KQAECEELQARVETLSNENRNLRDEL--QRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el--~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      -++++.+|+.++..|+.|...|...+  ..|..++..|+.|+..|..+|..|..
T Consensus        84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566777777777777777777664  67788888888888888888888875

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=91.40  E-value=1.2  Score=41.19  Aligned_cols=16  Identities=31%  Similarity=0.484  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 018643          311 CEKLTSENNSIKEDLS  326 (352)
Q Consensus       311 ~~~L~~EN~~Lk~~L~  326 (352)
                      ++.|+.++..|+.+|.
T Consensus       112 l~~l~~~~~~l~~el~  127 (188)
T PF03962_consen  112 LEELKKELKELKKELE  127 (188)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333344443333

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.34  E-value=0.62  Score=41.65  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          284 EELQARVETLSNENRNLRDELQRL  307 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L  307 (352)
                      .+|+.++..|+.++..|+.++..|
T Consensus        82 ~~L~~el~~l~~~~k~l~~eL~~L  105 (169)
T PF07106_consen   82 KELREELAELKKEVKSLEAELASL  105 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=91.11  E-value=0.9  Score=38.35  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          277 LRKQAECEELQARVETLSNENRNLRDELQRLSEE  310 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e  310 (352)
                      .+.++++++++++++.|+++|..|+.++..|+..
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~   63 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG   63 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            3445556667777777777777777777666653

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.06  E-value=3.8  Score=38.88  Aligned_cols=49  Identities=22%  Similarity=0.254  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      ++..+|..+++.|+.|.+.|+..+..|+.....++.+..+|..++..+.
T Consensus        49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555666666665555554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.04  E-value=1.2  Score=39.57  Aligned_cols=44  Identities=32%  Similarity=0.527  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      .+.|+.++..|+.++..+-.+|..|+..+..|..+...|..+|.
T Consensus        16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~   59 (143)
T PF12718_consen   16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK   59 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]

Probab=91.03  E-value=0.97  Score=38.50  Aligned_cols=45  Identities=27%  Similarity=0.324  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643          287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  331 (352)
Q Consensus       287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~  331 (352)
                      -.+|-.|+.-...|.+++..+++|+.+|+.||+-|-.-|+.|...
T Consensus        62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa  106 (120)
T KOG3650|consen   62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA  106 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence            445666666667788888888889999999999999999888643

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=90.91  E-value=0.25  Score=38.06  Aligned_cols=42  Identities=31%  Similarity=0.543  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643          294 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  339 (352)
Q Consensus       294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~  339 (352)
                      ++|.+.|+.+|..|..++..|+.||..||..    ..++.+..|..
T Consensus        13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~----~~pe~l~q~~~   54 (59)
T PF01166_consen   13 REEVEVLKEQIAELEERNSQLEEENNLLKQN----ASPEQLAQLQS   54 (59)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CSSSSSTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHh
Confidence            3466778888888888888889999888764    45555555543

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=90.89  E-value=0.042  Score=55.92  Aligned_cols=65  Identities=29%  Similarity=0.337  Sum_probs=48.1

Q ss_pred             chhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          251 QWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  322 (352)
Q Consensus       251 ~~~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  322 (352)
                      ....|..+++ .|=.++||.+|-+||.||+..+..|+.+.+.+..+|..|.      ..+++.|..++..+.
T Consensus       277 ~~~~~p~~~~-~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~------~~~~~~l~~~~~~~~  341 (395)
T KOG1414|consen  277 TVDEDPDERR-RRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL------LNEVELLRNEVKQLS  341 (395)
T ss_pred             ccCCCchhhh-hhhhhhhhhhhccccCCcccccccccccccchhhhhcccc------cchhhHHHhHHhhhc
Confidence            3334444333 4447899999999999999999999999999999999988      233355555555553

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=90.88  E-value=4.3  Score=37.86  Aligned_cols=63  Identities=22%  Similarity=0.357  Sum_probs=45.8

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS  316 (352)
Q Consensus       254 ~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~  316 (352)
                      ..+.+....++...+-+.-+.+-..-+.++..++.++..|+-+++.|..++..|..+...|..
T Consensus        66 ~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~  128 (201)
T PF13851_consen   66 KAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR  128 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446666677777777777777666667777777777777777777777777777777776663

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=90.78  E-value=5.3  Score=34.98  Aligned_cols=50  Identities=24%  Similarity=0.380  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      -+..++.|+.+++.++.++..+..+...|+.++..+...+..+++++.++
T Consensus        71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl  120 (151)
T PF11559_consen   71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL  120 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555555555454444444444444444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=90.71  E-value=1.2  Score=37.51  Aligned_cols=47  Identities=23%  Similarity=0.383  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          282 ECEELQARVETLSNENRNL--RDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~L--r~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .+..++.|+..++.+...|  +..+..|+-++..|+-+...|.++|..+
T Consensus        43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v   91 (106)
T PF10805_consen   43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV   91 (106)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3344466667777766666  6677777777777777777777776666

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.64  E-value=1.4  Score=38.30  Aligned_cols=66  Identities=29%  Similarity=0.411  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 018643          256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR---DELQRLSEECEKLTSENNSI  321 (352)
Q Consensus       256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr---~el~~L~~e~~~L~~EN~~L  321 (352)
                      |+-.-..||+.....+.+.--.|=.+.-++|..++-.|..+|..++   .++..|+.++..|......+
T Consensus        19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~   87 (120)
T PF12325_consen   19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL   87 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455666666555555555555555666666666666665443   23444444444444444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=90.53  E-value=4.9  Score=37.74  Aligned_cols=76  Identities=29%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHH--------HHH---HHHHHHHHHHHHHHHHHHHHHH----------------------
Q 018643          256 ERELKRQKRKQSNRESARRSRL--------RKQ---AECEELQARVETLSNENRNLRD----------------------  302 (352)
Q Consensus       256 Ere~KR~RRk~~NRESARrSR~--------RKq---~~~eeLe~kv~~Le~EN~~Lr~----------------------  302 (352)
                      |.-++|.||-+..+.++=.-+-        |=|   .+|..|.+--..|+.+|.+|+.                      
T Consensus        19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrF   98 (195)
T PF10226_consen   19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRF   98 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHh
Confidence            4557788887777666532221        222   2344455556666777777765                      


Q ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643          303 -----------------ELQRLSEECEKLTSENNSIKEDLSRLCGP  331 (352)
Q Consensus       303 -----------------el~~L~~e~~~L~~EN~~Lk~~L~~l~g~  331 (352)
                                       +|..|....+.|..||.+||+-|--|...
T Consensus        99 Gryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDee  144 (195)
T PF10226_consen   99 GRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDEE  144 (195)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc
Confidence                             46667777788889999999988877543

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PRK02793 phi X174 lysis protein; Provisional

Probab=90.52  E-value=2.3  Score=33.69  Aligned_cols=56  Identities=20%  Similarity=0.223  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN  341 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~  341 (352)
                      .+|+.|+..|+.....+..-|+.|.+.+.....+...|..+|..|.  +.+.++....
T Consensus         4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~~~~   59 (72)
T PRK02793          4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT--EKLKASQPSN   59 (72)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccc
Confidence            4689999999999999999999999999999999999999999997  6777776543

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=90.50  E-value=1.3  Score=47.83  Aligned_cols=49  Identities=16%  Similarity=0.263  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .++.+||.+.+.|+.|.+++..++++|++.+.+-..|..+|+.+|++-+
T Consensus        93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq  141 (907)
T KOG2264|consen   93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ  141 (907)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence            4677788888888888888888888888888877778777777776654

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=90.38  E-value=4.4  Score=37.69  Aligned_cols=27  Identities=15%  Similarity=0.223  Sum_probs=11.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          265 KQSNRESARRSRLRKQAECEELQARVE  291 (352)
Q Consensus       265 k~~NRESARrSR~RKq~~~eeLe~kv~  291 (352)
                      ++.+..+-+..+...+.+...|+.++.
T Consensus        94 RL~kLL~lk~~~~~~~e~~k~le~~~~  120 (190)
T PF05266_consen   94 RLNKLLSLKDDQEKLLEERKKLEKKIE  120 (190)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444

>PF15294 Leu_zip: Leucine zipper

Probab=90.30  E-value=0.84  Score=44.94  Aligned_cols=45  Identities=22%  Similarity=0.454  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      |..++..|+.||..|+.++..++.+|.....|...|..+|..++-
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999874

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=90.24  E-value=2.7  Score=40.59  Aligned_cols=53  Identities=34%  Similarity=0.463  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .....++..|..++..++.+...|..+|..|..+.+.|..+...|+.++.++.
T Consensus        85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e  137 (239)
T COG1579          85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE  137 (239)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677777777777777777777777777777777777777777777765

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=90.23  E-value=1.2  Score=37.54  Aligned_cols=43  Identities=19%  Similarity=0.290  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  324 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~  324 (352)
                      ...+|+++++.++++|..|+.+...|+.+++.|+..-.-|.+.
T Consensus        28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~   70 (105)
T PRK00888         28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER   70 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence            3456666666666666666666666666666666533333333

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=90.22  E-value=1.6  Score=43.42  Aligned_cols=73  Identities=29%  Similarity=0.319  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHhHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          256 ERELKRQKRKQSNRE-----SARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       256 Ere~KR~RRk~~NRE-----SARrSR~RK-q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      |-|.|-.+=++.|..     ++-.+..-- +..|++|+..+.+|+.++.....+++.+++.+..|+.|...|+++|...
T Consensus        88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r  166 (302)
T PF09738_consen   88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR  166 (302)
T ss_pred             HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555566666666632     333333222 4567777777777777777777778888888888888888888888765

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.21  E-value=2.3  Score=34.06  Aligned_cols=51  Identities=24%  Similarity=0.236  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      .+++.+||.++..-+.-.++|...|...+..++++....+.|.+++.++..
T Consensus         7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~   57 (72)
T COG2900           7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP   57 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            357888999998888888999999999999999999999999999998864

>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long)

Probab=90.17  E-value=0.86  Score=42.91  Aligned_cols=43  Identities=30%  Similarity=0.462  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      +.|..+|+.|+.|+..|+.++..|++    |..+...|.+-|..|.+
T Consensus       128 e~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~~  170 (200)
T PF07412_consen  128 EKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLTG  170 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence            33444444444444444444443322    33333444455555543

Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.

>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins

Probab=90.13  E-value=0.31  Score=35.50  Aligned_cols=30  Identities=33%  Similarity=0.440  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          296 ENRNLRDELQRLSEECEKLTSENNSIKEDL  325 (352)
Q Consensus       296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L  325 (352)
                      .|..|..++..|..++..|..||..|++++
T Consensus        15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~~   44 (46)
T PF07558_consen   15 RNSALSIKIQELENEVSKLLNENVNLRELV   44 (46)
T ss_dssp             ---------------HHHHHHHHHHHHHHH
T ss_pred             HhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence            345555566666666666666666666554

Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=90.13  E-value=2.8  Score=41.52  Aligned_cols=49  Identities=27%  Similarity=0.342  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .+++.|..++..+..++..++.++..|+.++..|..+...+.+++.++.
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~  257 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL  257 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555555555555544444444444443

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.11  E-value=2.7  Score=43.83  Aligned_cols=48  Identities=35%  Similarity=0.439  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +++-|+.+++.|+.||..||..+..|+..|++|..+..++.++|..+.
T Consensus       298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr  345 (502)
T KOG0982|consen  298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR  345 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            456667788888888888888888888888888888777777776664

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=90.02  E-value=1.2  Score=43.09  Aligned_cols=48  Identities=19%  Similarity=0.200  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  324 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~  324 (352)
                      .|=+++..|||+++..+..++..|+.|++.|+..+.+|-...+-|..-
T Consensus        89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY  136 (248)
T PF08172_consen   89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSY  136 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            344455688999999999999999999999999999998887766543

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=89.98  E-value=1.9  Score=33.62  Aligned_cols=52  Identities=21%  Similarity=0.302  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE  338 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~  338 (352)
                      .|+.++..|+.....+...|+.|.........+...|+.+|..|.  +.|.++.
T Consensus         1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~   52 (69)
T PF04102_consen    1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR--ERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HT-----
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence            378889999999999999999999999999999999999999887  6677665

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=89.83  E-value=1.8  Score=35.82  Aligned_cols=44  Identities=23%  Similarity=0.371  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  322 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  322 (352)
                      |+.|-...+.+|..|+.+|..|..+++.|+.++...+.|-..|-
T Consensus        40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll   83 (87)
T PF12709_consen   40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELL   83 (87)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555666666666666666666666666666666655554

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=89.77  E-value=2.8  Score=38.05  Aligned_cols=24  Identities=25%  Similarity=0.511  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          292 TLSNENRNLRDELQRLSEECEKLT  315 (352)
Q Consensus       292 ~Le~EN~~Lr~el~~L~~e~~~L~  315 (352)
                      .++.++..|..++..|+.++..|.
T Consensus        86 ~~~~e~k~L~~~v~~Le~e~r~L~  109 (158)
T PF09744_consen   86 QWRQERKDLQSQVEQLEEENRQLE  109 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444443

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=89.72  E-value=1.4  Score=37.93  Aligned_cols=50  Identities=24%  Similarity=0.333  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN  336 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~  336 (352)
                      +|=.+|..|+.....|..++..|++.+..|..||..|+-+...|+  ++|.+
T Consensus         5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR--~RL~~   54 (114)
T COG4467           5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR--ERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHhCC
Confidence            455788999999999999999999999999999999999999988  66665

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=89.61  E-value=34  Score=37.84  Aligned_cols=73  Identities=22%  Similarity=0.319  Sum_probs=33.0

Q ss_pred             hhHHHHHHHHH-HHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          254 QDERELKRQKR-KQSNRESARRSRLRKQAE---CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       254 ~DEre~KR~RR-k~~NRESARrSR~RKq~~---~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      --|.|+||.|. ++.-|..=+..|..=..+   -..|..++..|+.+|+.|+.++..|.+..+.=+.....|..+|.
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~  498 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA  498 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44666666664 344444444433330000   01233445555555555555555554444444433344433333

; GO: 0016021 integral to membrane

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=89.55  E-value=1.7  Score=37.33  Aligned_cols=54  Identities=11%  Similarity=0.195  Sum_probs=30.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN  318 (352)
Q Consensus       265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN  318 (352)
                      .+.-.|..+-|+..=..+-++|+..+..|++++..+.+++..|+.++..++...
T Consensus        21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l   74 (107)
T PF09304_consen   21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL   74 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555556666666666666666666655555555554433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.52  E-value=5.7  Score=37.47  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          277 LRKQAECEELQARVETLSNENRNLRDELQRLSEE  310 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e  310 (352)
                      .+++.++..|+.+++.++.++..++.++..++..
T Consensus        66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~   99 (302)
T PF10186_consen   66 EELRERLERLRERIERLRKRIEQKRERLEELRES   99 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444433333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.37  E-value=1.4  Score=43.20  Aligned_cols=54  Identities=19%  Similarity=0.320  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Q 018643          276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT----SENNSIKEDLSRLC  329 (352)
Q Consensus       276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~----~EN~~Lk~~L~~l~  329 (352)
                      =.+.+..++++..+++.++.++.++..++..|+.++..|+    .++..|+.+++.++
T Consensus        54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq  111 (265)
T COG3883          54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ  111 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555666666666666666666665555443    33444445554443

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=89.35  E-value=4.1  Score=37.27  Aligned_cols=38  Identities=32%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS  316 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~  316 (352)
                      .+.++.+|+.+++.|+.||..|..++..++++|..|..
T Consensus       109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~  146 (161)
T TIGR02894       109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID  146 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555543

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=89.33  E-value=5.5  Score=34.46  Aligned_cols=31  Identities=29%  Similarity=0.511  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          298 RNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ..|..++..++..|..|..+|.-|..+|..+
T Consensus       101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen  101 EQLEKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3455566666666666666666666666544

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=89.28  E-value=4.6  Score=43.33  Aligned_cols=47  Identities=23%  Similarity=0.394  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .+...+.+.+.|+.++..|......|..+...|..++..++.+|..|
T Consensus       179 eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~L  225 (546)
T PF07888_consen  179 ELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIREL  225 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444444444443333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=89.24  E-value=3.9  Score=35.55  Aligned_cols=13  Identities=23%  Similarity=0.478  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHh
Q 018643          316 SENNSIKEDLSRL  328 (352)
Q Consensus       316 ~EN~~Lk~~L~~l  328 (352)
                      .++.+|+..|.++
T Consensus        96 E~veEL~~Dv~Dl  108 (120)
T PF12325_consen   96 EEVEELRADVQDL  108 (120)
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=89.10  E-value=3.9  Score=31.33  Aligned_cols=46  Identities=17%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      .+++|...|..|..+...|..++..|+.+......|-.+-.++|-.
T Consensus         4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN   49 (56)
T PF04728_consen    4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN   49 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4667777777777777777777777766666666665555555543

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=88.99  E-value=4.3  Score=37.75  Aligned_cols=50  Identities=22%  Similarity=0.419  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ....+.+|+.++..|+.+...|..+.+....++..|+.+...|.++|...
T Consensus       129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~  178 (190)
T PF05266_consen  129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA  178 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555444444455555555555555555443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=88.99  E-value=7.8  Score=34.87  Aligned_cols=52  Identities=27%  Similarity=0.403  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      +.+.+++++.++..++.+..+...|++++..++.+++.++.+..++.+....
T Consensus       125 ~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (191)
T PF04156_consen  125 LKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQ  176 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555544444444444444444444433333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=88.92  E-value=1.8  Score=33.02  Aligned_cols=36  Identities=19%  Similarity=0.363  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSEN  318 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN  318 (352)
                      +++||.++..|+.....++.+++.|++.++.|..-.
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env   37 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIEENV   37 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666555555555555554444444444333

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PRK09039 hypothetical protein; Validated

Probab=88.52  E-value=4.8  Score=40.44  Aligned_cols=38  Identities=18%  Similarity=0.286  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      |..|+++.+.|+.++..|+.++..++.+...++.+|..
T Consensus       139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~  176 (343)
T PRK09039        139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIAD  176 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=88.41  E-value=3.1  Score=32.77  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 018643          287 QARVETLSNENRNLRDELQRL  307 (352)
Q Consensus       287 e~kv~~Le~EN~~Lr~el~~L  307 (352)
                      +.+++.+..++......+..|
T Consensus        11 r~rLd~~~rk~~~~~~~~k~L   31 (69)
T PF14197_consen   11 RNRLDSLTRKNSVHEIENKRL   31 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=88.38  E-value=6.1  Score=29.09  Aligned_cols=28  Identities=32%  Similarity=0.483  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          295 NENRNLRDELQRLSEECEKLTSENNSIK  322 (352)
Q Consensus       295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  322 (352)
                      .....|..++..|..++..|..++..|+
T Consensus        25 ~~~~~le~~~~~L~~en~~L~~~i~~L~   52 (54)
T PF07716_consen   25 QREEELEQEVQELEEENEQLRQEIAQLE   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444444444444444444444443

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>PRK00846 hypothetical protein; Provisional

Probab=88.37  E-value=3.3  Score=33.50  Aligned_cols=58  Identities=19%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT  343 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~  343 (352)
                      +.|+.++..|+........-|+.|...+.....+...|+.+|..|.  +.+.++..+..+
T Consensus         9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~--~rL~~~~~s~~~   66 (77)
T PRK00846          9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRSTLFA   66 (77)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccCC
Confidence            6789999999999999999999999999999999999999999998  778877755543

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=88.25  E-value=10  Score=31.37  Aligned_cols=67  Identities=13%  Similarity=0.101  Sum_probs=57.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          263 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      -+....++..+..=..|...+..|++++..|..|...-.++.-.+.+....|..|+..|+..+.+-.
T Consensus         6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~   72 (96)
T PF08647_consen    6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS   72 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence            3456667777777788999999999999999999999999999999999999999999988877654

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=88.25  E-value=1.7  Score=46.44  Aligned_cols=56  Identities=23%  Similarity=0.437  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          275 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       275 SR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      .|..-+..+.++...+..|++|...++.++..|..+...|+.||.+|..+|..+..
T Consensus       135 ~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  135 ERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            33344445566667777778888888888888888888888888888888777764

>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum

Probab=88.22  E-value=1.7  Score=35.30  Aligned_cols=48  Identities=25%  Similarity=0.471  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643          292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  339 (352)
Q Consensus       292 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~  339 (352)
                      .+..+...+..++..++.+..+|..||..|+-++..+..++.+..+-.
T Consensus        32 ~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~   79 (97)
T PF04999_consen   32 YSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIAR   79 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            344566777778888888888889999999988888888777765544

One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=88.22  E-value=3.1  Score=39.08  Aligned_cols=42  Identities=31%  Similarity=0.485  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  325 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L  325 (352)
                      ..|..++..|+.+|..|..+.+.|+..+..|..++..|+.+|
T Consensus        98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            456666677777777777777777777777766666666665

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=88.08  E-value=1.3  Score=44.12  Aligned_cols=36  Identities=25%  Similarity=0.319  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          294 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      ..+...|..+|..-.+++.....|..+|..+|.++.
T Consensus       212 n~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ  247 (306)
T PF04849_consen  212 NQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQ  247 (306)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444666666666666666666666666666664

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK04325 hypothetical protein; Provisional

Probab=88.05  E-value=2.8  Score=33.34  Aligned_cols=55  Identities=13%  Similarity=0.211  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  339 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~  339 (352)
                      ...|+.++..|+.....+..-|+.|...+.....+...|+.+|..|.  +.+.++..
T Consensus         4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~--~rl~~~~~   58 (74)
T PRK04325          4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY--QQMRDANP   58 (74)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence            46788999999999999999999999999999999999999999986  56666543

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.04  E-value=8.8  Score=38.17  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 018643          304 LQRLSEECEKLTSENNSIKED  324 (352)
Q Consensus       304 l~~L~~e~~~L~~EN~~Lk~~  324 (352)
                      ...++.+...+..|...|..+
T Consensus       101 ~n~~~~~l~~~~~e~~sl~~q  121 (314)
T PF04111_consen  101 YNELQLELIEFQEERDSLKNQ  121 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []

Probab=88.03  E-value=0.27  Score=41.46  Aligned_cols=48  Identities=29%  Similarity=0.472  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .+++.|...+..|..+|..|+.++..|+.++..++.+...|+..|...
T Consensus        25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a   72 (131)
T PF05103_consen   25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA   72 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence            578899999999999999999999999999998888888888776443

Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=87.85  E-value=1.9  Score=32.86  Aligned_cols=38  Identities=18%  Similarity=0.411  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      +..|+.+...|...+..++.+++.|+.+...|.+-+++
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~   39 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKD   39 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555444444444444444444444433

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=87.82  E-value=1.8  Score=36.88  Aligned_cols=39  Identities=23%  Similarity=0.467  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  324 (352)
Q Consensus       286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~  324 (352)
                      |...+..|+.++..+..++..|+..+..+..+...|+.+
T Consensus        78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E  116 (118)
T PF13815_consen   78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE  116 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444444444444444444444444444

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=87.76  E-value=4.8  Score=42.25  Aligned_cols=78  Identities=21%  Similarity=0.177  Sum_probs=48.4

Q ss_pred             HHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018643          265 KQSNRESARRSRLRKQAE----CEELQARVETLSNENRNLRDELQRL----SEECEKLTSENNSIKEDLSRLCGPEAVAN  336 (352)
Q Consensus       265 k~~NRESARrSR~RKq~~----~eeLe~kv~~Le~EN~~Lr~el~~L----~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~  336 (352)
                      .+.|-++++++-+||.+.    +..++.++..++++|..|++....+    ++..+.+..++..+-++|.+|+  +.|+|
T Consensus       369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq--EQlrD  446 (493)
T KOG0804|consen  369 ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ--EQLRD  446 (493)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Confidence            445667777777666543    4456666666777777766654433    3334444455556666677776  77888


Q ss_pred             hhhcCCCC
Q 018643          337 LEQSNPTQ  344 (352)
Q Consensus       337 L~~~~~~~  344 (352)
                      |.--+++|
T Consensus       447 lmf~le~q  454 (493)
T KOG0804|consen  447 LMFFLEAQ  454 (493)
T ss_pred             Hheehhhh
Confidence            87777663

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=87.75  E-value=2.9  Score=34.57  Aligned_cols=37  Identities=38%  Similarity=0.614  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc
Q 018643          293 LSNENRNLRDELQRLSEE------CEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       293 Le~EN~~Lr~el~~L~~e------~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +..+|..|+.+|..|+.+      ......||.+|++++..|+
T Consensus        22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~   64 (86)
T PF12711_consen   22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ   64 (86)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555432      2345556666666665553

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli

Probab=87.70  E-value=5.6  Score=33.96  Aligned_cols=48  Identities=25%  Similarity=0.419  Sum_probs=29.4

Q ss_pred             hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          252 WIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDE  303 (352)
Q Consensus       252 ~~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~e  303 (352)
                      .+.+||+.+.++|..+||||-|.    |+..+-.+..+-..|..+|.-+.++
T Consensus        47 ~MKEER~K~E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~q   94 (121)
T PF10669_consen   47 RMKEERSKKEEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQ   94 (121)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHH
Confidence            36789999999999999998765    3333333333333355555544433

The function is currently unknown.

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=87.54  E-value=2.4  Score=43.39  Aligned_cols=60  Identities=28%  Similarity=0.290  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          270 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       270 ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +.|..-|+|-.+--...|..++.+.-|.+.||.+++++.+....|+.|+..|++-++.++
T Consensus       227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlE  286 (561)
T KOG1103|consen  227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLE  286 (561)
T ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            344445566666666667778888888999999999999999999999999999888886

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=87.50  E-value=8.6  Score=34.34  Aligned_cols=45  Identities=33%  Similarity=0.487  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643          293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  339 (352)
Q Consensus       293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~  339 (352)
                      |+.+...|..++..|..++..|+.|+..|...|..+.  ..|..|..
T Consensus        57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q--~kv~eLE~  101 (140)
T PF10473_consen   57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ--EKVSELES  101 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            3333333444444444445555555555555555554  45555554

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=87.40  E-value=3.2  Score=38.36  Aligned_cols=55  Identities=24%  Similarity=0.496  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE  338 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~  338 (352)
                      ..+|+.++..|+.++..|..++..|+.+++.++..+..+++...+.+ .+.+..|.
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~-~~ei~~lk  176 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH-QEEIDFLK  176 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            56788888888888888888888888888888777776665554443 23344443

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=87.37  E-value=2.5  Score=32.43  Aligned_cols=38  Identities=34%  Similarity=0.611  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhh
Q 018643          298 RNLRDELQRLSEECEKLTSENNSIKEDLSRL-CGPEAVA  335 (352)
Q Consensus       298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l-~g~~~~~  335 (352)
                      ..++.++..|+.+++.|+.||..|+.++..| ..++.+.
T Consensus        20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie   58 (80)
T PF04977_consen   20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE   58 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            3444555555555555555555555555555 4444443

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.29  E-value=2.5  Score=41.48  Aligned_cols=51  Identities=25%  Similarity=0.368  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      =+.+++.|..+|+.+..+...++.++..++.++..|..+...|++.|....
T Consensus        50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~  100 (265)
T COG3883          50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ  100 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777777788888888888888888888888888888888887777654

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=87.24  E-value=4.1  Score=40.45  Aligned_cols=55  Identities=27%  Similarity=0.324  Sum_probs=25.6

Q ss_pred             HHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          259 LKRQKRKQ---SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK  313 (352)
Q Consensus       259 ~KR~RRk~---~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~  313 (352)
                      +||+.||.   +=|+-.|+-++-=.-+|+.|+.+-+.|+....+|.+||..|++-+..
T Consensus       230 rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e  287 (294)
T KOG4571|consen  230 RKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE  287 (294)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444   23333333333333445555555555555555555555555444433

>PRK00295 hypothetical protein; Provisional

Probab=87.14  E-value=3.9  Score=32.01  Aligned_cols=51  Identities=16%  Similarity=0.204  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643          286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE  338 (352)
Q Consensus       286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~  338 (352)
                      |+.++..|+.....+..-|+.|...+.....+...|+.+|..|.  +.+.++.
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~   53 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI--KRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence            67889999999999999999999999999999999999999887  5666665

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=87.10  E-value=10  Score=37.33  Aligned_cols=49  Identities=14%  Similarity=0.368  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +.+++.++.++...+.+...++.++..++.++..|+.+-.+|...+..+
T Consensus       206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~  254 (269)
T PF05278_consen  206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI  254 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777777777777777777777777777777766666655444

>PRK14162 heat shock protein GrpE; Provisional

Probab=86.85  E-value=1.7  Score=40.60  Aligned_cols=27  Identities=22%  Similarity=0.452  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          289 RVETLSNENRNLRDELQRLSEECEKLT  315 (352)
Q Consensus       289 kv~~Le~EN~~Lr~el~~L~~e~~~L~  315 (352)
                      +++.|+.++..|+.++.+++.+++-++
T Consensus        47 ~l~~l~~e~~elkd~~lR~~AEfeN~r   73 (194)
T PRK14162         47 EIADLKAKNKDLEDKYLRSQAEIQNMQ   73 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=86.80  E-value=10  Score=34.16  Aligned_cols=59  Identities=25%  Similarity=0.407  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  339 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~  339 (352)
                      .++..|..++...+.+...++.++..++.+...++.+|..|+.+...+.-|+-+.|...
T Consensus        91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~  149 (177)
T PF13870_consen   91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDK  149 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence            44556667777777777888888888888888888888888888888777777665443

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=86.78  E-value=3.2  Score=33.84  Aligned_cols=33  Identities=33%  Similarity=0.404  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLT  315 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~  315 (352)
                      ++.|-.+|+..+.||..|+.+...|+.-+..|.
T Consensus        32 L~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm   64 (80)
T PF10224_consen   32 LEALSDRVEEVKEENEKLESENEYLQQYIGNLM   64 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444443

The exact function is unknown.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=86.62  E-value=6.5  Score=40.01  Aligned_cols=51  Identities=22%  Similarity=0.472  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      |-+.+...||.-+..+++||..|.-+|+.+.++|.+.+.|+.+|..+|.+.
T Consensus       124 k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~  174 (401)
T PF06785_consen  124 KTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA  174 (401)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            445666777778888999999999999999999998888888886666543

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=86.38  E-value=8  Score=35.10  Aligned_cols=46  Identities=35%  Similarity=0.599  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .+|..+|+.|+.+|..|...+..+..+...|......|+.++..++
T Consensus        92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~  137 (158)
T PF09744_consen   92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH  137 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence            3455667777777777776666666666666666666666666554

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=86.32  E-value=8.9  Score=39.84  Aligned_cols=28  Identities=21%  Similarity=0.380  Sum_probs=17.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018643          261 RQKRKQSNRESARRSRLRKQAECEELQA  288 (352)
Q Consensus       261 R~RRk~~NRESARrSR~RKq~~~eeLe~  288 (352)
                      .+|||....|--||-|..=..+|.+|-.
T Consensus       230 dr~Krd~HNeVERRRR~nIN~~IkeLg~  257 (411)
T KOG1318|consen  230 DRRKRDNHNEVERRRRENINDRIKELGQ  257 (411)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            3444555666667767666666666654

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=86.32  E-value=5.2  Score=31.76  Aligned_cols=51  Identities=22%  Similarity=0.360  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      |.+.|..|..+-+.|....-.+...|..|+.++..+..+...|+.++..+.
T Consensus        10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e   60 (74)
T PF12329_consen   10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE   60 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555555555555555543

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=86.29  E-value=2.3  Score=42.51  Aligned_cols=34  Identities=38%  Similarity=0.713  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIK  322 (352)
Q Consensus       289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  322 (352)
                      ++..|+++|..|+.++..++.+|..|..||..|+
T Consensus        28 ~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr   61 (310)
T PF09755_consen   28 RIESLQQENRVLKRELETEKARCKHLQEENRALR   61 (310)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=86.25  E-value=5.3  Score=30.96  Aligned_cols=43  Identities=19%  Similarity=0.322  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      ..++...+..|-.+.++|......+..|..+...|+.++..++
T Consensus        17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen   17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444456666666777777777777777777777777666653

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=86.23  E-value=8.1  Score=43.85  Aligned_cols=28  Identities=21%  Similarity=0.491  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          300 LRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      |+.+++.|++.++.|..+...||+++..
T Consensus       330 LQ~eve~lkEr~deletdlEILKaEmee  357 (1243)
T KOG0971|consen  330 LQQEVEALKERVDELETDLEILKAEMEE  357 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444444444444444443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.17  E-value=10  Score=34.84  Aligned_cols=42  Identities=21%  Similarity=0.358  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +.++..|+.+...+..-+..|+.|+..|..++..|.+++.+|
T Consensus       129 ~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l  170 (194)
T PF08614_consen  129 EEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL  170 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333334444444444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=86.12  E-value=14  Score=33.25  Aligned_cols=45  Identities=22%  Similarity=0.480  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ..++.+++.++.....+.+++..|.+++.+++.+-..++.++..+
T Consensus       126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~  170 (191)
T PF04156_consen  126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL  170 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666666666666666666666666666666

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=86.08  E-value=5.6  Score=36.18  Aligned_cols=37  Identities=32%  Similarity=0.496  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      ++.++..+..+++.|++++++.+.|...|+.|++.+.
T Consensus       152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~  188 (192)
T PF05529_consen  152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ  188 (192)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456667778888888888888888888888887764

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=86.00  E-value=2.1  Score=41.39  Aligned_cols=51  Identities=12%  Similarity=0.169  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      -.-=+..++.|+++|..|+.+++++.-+|+.|+++...|-.+..++..++.
T Consensus        56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~~  106 (263)
T PRK10803         56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGGA  106 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            345688999999999999999999999999999999999999888765543

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=85.96  E-value=2.8  Score=31.59  Aligned_cols=47  Identities=21%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ++.++++|+.++..-++   .=.-.-...+.++..|+.||..|+++|..+
T Consensus         2 w~~Rl~ELe~klkaerE---~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~   48 (52)
T PF12808_consen    2 WLLRLEELERKLKAERE---ARSLDRSAARKRLSKLEGENRLLRAELERL   48 (52)
T ss_pred             HHHHHHHHHHHHHHhHH---hccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566555443221   111112333444455555666666555544

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=85.90  E-value=7.3  Score=44.67  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .+..++..+++.|+.+.+.|+.++.+|++++..+
T Consensus       394 ~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~  427 (1074)
T KOG0250|consen  394 SELEERENKLEQLKKEVEKLEEQINSLREELNEV  427 (1074)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444555555555555555555554444

>PRK14143 heat shock protein GrpE; Provisional

Probab=85.87  E-value=2.3  Score=40.93  Aligned_cols=19  Identities=21%  Similarity=0.386  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 018643          285 ELQARVETLSNENRNLRDE  303 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~e  303 (352)
                      +|..++.+|.++...+|++
T Consensus        85 elkd~~lR~~AdfeN~RKR  103 (238)
T PRK14143         85 ELNSQYMRIAADFDNFRKR  103 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=85.69  E-value=4.6  Score=30.94  Aligned_cols=41  Identities=24%  Similarity=0.485  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .+++.|..+...|..++..|..++..|+.+....+++...-
T Consensus         3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA   43 (56)
T PF04728_consen    3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA   43 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777888888888888888888888887777777766543

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.69  E-value=7.9  Score=39.40  Aligned_cols=64  Identities=17%  Similarity=0.283  Sum_probs=28.4

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       255 DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      ++..+++.++.+-+|..|-.+-+|         ++-+.|..-..+|+.+++.|+++...|......|+.+.++
T Consensus       215 ~~eklR~r~eeeme~~~aeq~slk---------Rt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  215 VREKLRRRREEEMERLQAEQESLK---------RTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            444444555555555555444443         3333333333444444444444444444444444444433

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=85.64  E-value=7.3  Score=36.01  Aligned_cols=48  Identities=29%  Similarity=0.493  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRL---------------SEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L---------------~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      +..+.+|+.++..|+.+...|+.+++.+               +.++..|+.+|.+|+.+|+.
T Consensus       126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~  188 (189)
T PF10211_consen  126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444555555555555555444444443               34444555555555555543

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=85.60  E-value=11  Score=37.00  Aligned_cols=73  Identities=19%  Similarity=0.263  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          256 ERELKRQKRKQSNRESARRSRLRKQAECEE---------LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       256 Ere~KR~RRk~~NRESARrSR~RKq~~~ee---------Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      -.++.+.+++....-+.+.  ..|++.+..         +...+.....+|..+..++...++++++|+.+...|++++.
T Consensus       140 ldel~e~~~~el~~l~~~~--q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~  217 (258)
T PF15397_consen  140 LDELNEMRQMELASLSRKI--QEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVE  217 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666555544443  333333332         33455666679999999999999999999999999999998


Q ss_pred             HhcC
Q 018643          327 RLCG  330 (352)
Q Consensus       327 ~l~g  330 (352)
                      .|..
T Consensus       218 ~L~~  221 (258)
T PF15397_consen  218 QLQA  221 (258)
T ss_pred             HHHH
Confidence            8864

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=85.59  E-value=16  Score=34.47  Aligned_cols=83  Identities=18%  Similarity=0.322  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643          256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA  335 (352)
Q Consensus       256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~  335 (352)
                      +-|++|.+ .+...+-..|.-..-+++...|+..+..-+..-...-.+-..++.+...|..|...+..+|.+|.  ..|.
T Consensus       102 ~~eirR~~-LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ--~qv~  178 (192)
T PF11180_consen  102 DVEIRRAQ-LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQ--RQVR  178 (192)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            33344443 45555555555666667777777777766666666555556666666777777777777777766  5555


Q ss_pred             chhhcC
Q 018643          336 NLEQSN  341 (352)
Q Consensus       336 ~L~~~~  341 (352)
                      .|....
T Consensus       179 ~Lq~q~  184 (192)
T PF11180_consen  179 QLQRQA  184 (192)
T ss_pred             HHHHHh
Confidence            555543

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=85.53  E-value=8.9  Score=29.73  Aligned_cols=36  Identities=28%  Similarity=0.500  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTS  316 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~  316 (352)
                      .-...++.++...+..|..|..+|..|+.+++.|+.
T Consensus        25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen   25 SANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344556778888888888888888888888877765

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PRK14155 heat shock protein GrpE; Provisional

Probab=85.47  E-value=1.7  Score=41.12  Aligned_cols=16  Identities=19%  Similarity=0.283  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q 018643          286 LQARVETLSNENRNLR  301 (352)
Q Consensus       286 Le~kv~~Le~EN~~Lr  301 (352)
                      |+.++..+.++.+.+|
T Consensus        32 lkd~~lR~~AefeN~R   47 (208)
T PRK14155         32 LKDQALRYAAEAENTK   47 (208)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>smart00340 HALZ homeobox associated leucin zipper

Probab=85.33  E-value=1.7  Score=31.55  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          305 QRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       305 ~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      +.|++-|+.|..||.+|..++.+|+.
T Consensus         8 e~LKrcce~LteeNrRL~ke~~eLra   33 (44)
T smart00340        8 ELLKRCCESLTEENRRLQKEVQELRA   33 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56777788888888888888877764

>PRK14158 heat shock protein GrpE; Provisional

Probab=85.30  E-value=2.6  Score=39.50  Aligned_cols=23  Identities=13%  Similarity=0.070  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDEL  304 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el  304 (352)
                      ++++|..++..+.++...+|.+.
T Consensus        55 e~~el~d~~lR~~AefeN~RkR~   77 (194)
T PRK14158         55 EAAANWDKYLRERADLENYRKRV   77 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444443

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=85.09  E-value=2.8  Score=42.43  Aligned_cols=60  Identities=32%  Similarity=0.388  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchhhcCCC
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT  343 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~~~~~~  343 (352)
                      ..|+.++..|+.+++.|+.++..|..++..++.+...|++++..+.. +..+..+...++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   64 (389)
T PRK03992          4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDD   64 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCC
Confidence            44555555666666666666666666667777777777777776654 3445555544433

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=85.08  E-value=3.5  Score=42.16  Aligned_cols=47  Identities=21%  Similarity=0.208  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchhhcCC
Q 018643          296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNP  342 (352)
Q Consensus       296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~~~~~  342 (352)
                      ++..|..++..|+.++..++.|...|+++|.+|.. +-.+.++...++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (398)
T PTZ00454         30 ELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMID   77 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEc
Confidence            33334444444444444455555555555665554 344555554443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=84.97  E-value=8.3  Score=38.62  Aligned_cols=48  Identities=25%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      +.++-+|+.++..+-.||+.|...|...+.--..|..|+..|+++-..
T Consensus       240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E  287 (306)
T PF04849_consen  240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE  287 (306)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566667777777777777777777777777777777777766544

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=84.93  E-value=4.1  Score=37.68  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  325 (352)
Q Consensus       289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L  325 (352)
                      +.+.|...|.-|+.+++.....++.|..++..|...+
T Consensus        75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~  111 (182)
T PF15035_consen   75 RSEELAQVNALLREQLEQARKANEALQEDLQKLTQDW  111 (182)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444333333

>PRK10698 phage shock protein PspA; Provisional

Probab=84.70  E-value=12  Score=35.47  Aligned_cols=70  Identities=14%  Similarity=0.172  Sum_probs=47.3

Q ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643          272 ARRSRLRKQA---ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN  341 (352)
Q Consensus       272 ARrSR~RKq~---~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~  341 (352)
                      ||..=.||+.   .+..|+.+++..+.....|+..+..|+.++..++..-..|..+...-.....+......+
T Consensus        87 Ar~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~  159 (222)
T PRK10698         87 ARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSG  159 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4444444443   345566777777778888888888888888888888888888777665554444444433

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=84.67  E-value=1.7  Score=44.00  Aligned_cols=22  Identities=41%  Similarity=0.516  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 018643          293 LSNENRNLRDELQRLSEECEKL  314 (352)
Q Consensus       293 Le~EN~~Lr~el~~L~~e~~~L  314 (352)
                      |+.||..|++|++.|+.+.++|
T Consensus        37 Lr~EN~~LKkEN~~Lk~eVerL   58 (420)
T PF07407_consen   37 LRMENHSLKKENNDLKIEVERL   58 (420)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin

Probab=84.59  E-value=6.8  Score=34.42  Aligned_cols=54  Identities=19%  Similarity=0.198  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA  335 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~  335 (352)
                      +..||+.+|..|+.|+..+..-...|...+..|+-.+.+.++++..+.....+.
T Consensus        26 ERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~   79 (134)
T PF08232_consen   26 ERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLN   79 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            345777899999999999988889999999999999999999988876655544

Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].

>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]

Probab=84.54  E-value=2.8  Score=41.07  Aligned_cols=48  Identities=31%  Similarity=0.282  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      +-.+..+|+.+.+.|+.++.+|.    .+..+.+.|+.||.+|++.|.--..
T Consensus        64 ~~~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL~~~~~  111 (284)
T COG1792          64 FLKSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELLDFKES  111 (284)
T ss_pred             HHHHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCccc
Confidence            33444555555555555554333    3445568899999999988866543

>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S

Probab=84.49  E-value=9.5  Score=34.63  Aligned_cols=57  Identities=12%  Similarity=0.201  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          257 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK  313 (352)
Q Consensus       257 re~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~  313 (352)
                      +-.+..+++++.|..|+-+-+.|-.++.+|..++...+.....|...|..|...+..
T Consensus        81 ~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~  137 (152)
T PF11500_consen   81 KAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS  137 (152)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456667889999999999999999999999888777777777777666555443

cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=84.43  E-value=3.5  Score=34.71  Aligned_cols=46  Identities=30%  Similarity=0.429  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ..+|+.+++..+.|-.-||..|..|..++..|+.|...++.+...+
T Consensus         3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~   48 (96)
T PF11365_consen    3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDL   48 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4678888888888888888888887777777777777777765444

>PRK00736 hypothetical protein; Provisional

Probab=84.40  E-value=5  Score=31.40  Aligned_cols=53  Identities=17%  Similarity=0.278  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  339 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~  339 (352)
                      .++.++..|+.....+..-|+.|...+.....+...|+.+|..|.  +.+.++..
T Consensus         2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~--~rl~~~~~   54 (68)
T PRK00736          2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT--ERFLSLEE   54 (68)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence            367888888888888888888888888888888888888888886  55665543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=84.32  E-value=7.7  Score=40.40  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 018643          283 CEELQARVETLSNENRNLRDEL  304 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el  304 (352)
                      +.++|..+..|+.||..|..+.
T Consensus        50 ~~~~E~~l~~Lq~e~~~l~e~~   71 (459)
T KOG0288|consen   50 LQEKELELNRLQEENTQLNEER   71 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555554444443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=84.25  E-value=8.3  Score=41.41  Aligned_cols=61  Identities=30%  Similarity=0.396  Sum_probs=36.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  325 (352)
Q Consensus       265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L  325 (352)
                      +++-|..+|..-.--...+.+|+.++..++..+..|..++..|+.++..|+.+...++.+|
T Consensus       132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l  192 (546)
T KOG0977|consen  132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL  192 (546)
T ss_pred             HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3445555554222234556666677777666666666666666666666666666666543

>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]

Probab=84.18  E-value=4.2  Score=41.17  Aligned_cols=49  Identities=24%  Similarity=0.336  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +..+++++.++..-..||..+.+++++++.-|..|.....+||+.|..-
T Consensus       153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR  201 (405)
T KOG2010|consen  153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR  201 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999999999999999999999988764

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=84.14  E-value=3.5  Score=43.45  Aligned_cols=49  Identities=12%  Similarity=0.308  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +++++.|+.+++.|..+...|.++|+.|+.++..|+.+...++.++...
T Consensus        82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~~  130 (475)
T PRK13729         82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTA  130 (475)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Confidence            3446666777777777778888888888888888888777777665544

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=84.10  E-value=3.5  Score=34.15  Aligned_cols=42  Identities=21%  Similarity=0.378  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          287 QARVETLSNEN-RNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       287 e~kv~~Le~EN-~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +.+|..|..-- .....+|..|+.++..|..||.+|+.+|...
T Consensus        33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e   75 (87)
T PF12709_consen   33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE   75 (87)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555554211 1134455555555555555555555555443

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein

Probab=84.09  E-value=20  Score=31.60  Aligned_cols=46  Identities=33%  Similarity=0.403  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          283 CEELQARVETLSNENRNL--------RDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~L--------r~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +..+..++..|+..+..|        +.++..|---+..|...+..++.+|+.|
T Consensus        57 ~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L  110 (136)
T PF04871_consen   57 LEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL  110 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence            444444444444444444        4444555555555566777777777776

This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=84.06  E-value=8.2  Score=36.86  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      +.+.++...|+.+++....+++.+..+...|+.+.+
T Consensus       154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e  189 (216)
T KOG1962|consen  154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE  189 (216)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=84.05  E-value=2.2  Score=36.82  Aligned_cols=29  Identities=28%  Similarity=0.441  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          295 NENRNLRDELQRLSEECEKLTSENNSIKE  323 (352)
Q Consensus       295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  323 (352)
                      +|.+.|+.+|..|.+++..|+.||.-||.
T Consensus        67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~   95 (123)
T KOG4797|consen   67 EEVEVLKEQIRELEERNSALERENSLLKT   95 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445556666666666777777776653

>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins

Probab=83.87  E-value=5.4  Score=39.32  Aligned_cols=46  Identities=28%  Similarity=0.375  Sum_probs=29.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT  315 (352)
Q Consensus       267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~  315 (352)
                      =|.|+-+++   =+.+|+.|..+|..|+..|+.||++|...++.++.|+
T Consensus        67 y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr  112 (389)
T PF06216_consen   67 YNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR  112 (389)
T ss_pred             HHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            345554432   3456677777777777777777777776666666665

The function of this family is unknown.

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=83.79  E-value=15  Score=32.73  Aligned_cols=62  Identities=26%  Similarity=0.395  Sum_probs=33.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          264 RKQSNRESARRSRLRKQAECEELQ-------ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       264 Rk~~NRESARrSR~RKq~~~eeLe-------~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +++..-+.+.+.-.+|++.++.|+       .++..|+.+...+..++..++.++..+   +..++.+|..+
T Consensus       114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f  182 (218)
T cd07596         114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRF  182 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            445555666666666666666654       255555556555555555555444433   23344444444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PRK14148 heat shock protein GrpE; Provisional

Probab=83.74  E-value=3.3  Score=38.79  Aligned_cols=58  Identities=12%  Similarity=0.135  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP  342 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~  342 (352)
                      .|+.+++.|+.+...|+.++-++..+++-++....+=++++.+.....-+.+|+..+|
T Consensus        44 ~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~D  101 (195)
T PRK14148         44 RAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVID  101 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            3333334444444444444444444443333333333333333333333444443333

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=83.68  E-value=5.9  Score=42.60  Aligned_cols=49  Identities=24%  Similarity=0.411  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ++|+..|+.+-..++.....|..++....+||+.|+.+|..|+.+|...
T Consensus       279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q  327 (581)
T KOG0995|consen  279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ  327 (581)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566667777777777777777777777778888888888887776653

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=83.64  E-value=5.8  Score=32.70  Aligned_cols=30  Identities=30%  Similarity=0.563  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          299 NLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .|..++..|+.++..|+.+...+.++|..+
T Consensus        71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~~~  100 (108)
T PF02403_consen   71 ELKAEVKELKEEIKELEEQLKELEEELNEL  100 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444443

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]

Probab=83.64  E-value=13  Score=35.64  Aligned_cols=29  Identities=31%  Similarity=0.487  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643          303 ELQRLSEECEKLTSENNSIKEDLSRLCGP  331 (352)
Q Consensus       303 el~~L~~e~~~L~~EN~~Lk~~L~~l~g~  331 (352)
                      +-..++++++-|+.-|++||++|+.+-.+
T Consensus       229 eEkk~~eei~fLk~tN~qLKaQLegI~ap  257 (259)
T KOG4001|consen  229 EEKKMKEEIEFLKETNRQLKAQLEGILAP  257 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            33456677778888888888888776544

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.47  E-value=11  Score=42.45  Aligned_cols=63  Identities=19%  Similarity=0.239  Sum_probs=50.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      ++-..=+--+.+-+..++.|.+.+..|+.||++|..++..+..+..+|+.++.-|+.+|....
T Consensus       657 ~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~  719 (970)
T KOG0946|consen  657 DIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS  719 (970)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            333344555666677888899999999999999999999999999999999999999998544

>PRK14160 heat shock protein GrpE; Provisional

Probab=83.43  E-value=4  Score=38.77  Aligned_cols=61  Identities=20%  Similarity=0.213  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT  343 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~  343 (352)
                      ++.|+.++..|+.+...|+.++.++..+++-++....+=++++.......-+.+|+..+|.
T Consensus        63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn  123 (211)
T PRK14160         63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDN  123 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence            4445555555555555555555555555555555555555555556556667777766665

>smart00787 Spc7 Spc7 kinetochore protein

Probab=83.39  E-value=15  Score=36.57  Aligned_cols=47  Identities=23%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ++..|..++..+..++...+.++..++.+...|......+.+++.++
T Consensus       205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~  251 (312)
T smart00787      205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL  251 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=83.36  E-value=25  Score=30.23  Aligned_cols=44  Identities=14%  Similarity=0.221  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED  324 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~  324 (352)
                      .-.++|..+.+.|+.-+..|+.+...+.+.+..|..+...+...
T Consensus        30 ~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~   73 (107)
T PF09304_consen   30 TSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN   73 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=83.35  E-value=5.9  Score=31.70  Aligned_cols=27  Identities=30%  Similarity=0.393  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEEC  311 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~  311 (352)
                      +.+..+..|+.||=.|+-+|-.|.+..
T Consensus         4 Eqe~~i~~L~KENF~LKLrI~fLee~l   30 (75)
T PF07989_consen    4 EQEEQIDKLKKENFNLKLRIYFLEERL   30 (75)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            344555555555555555544444433

>PF15556 Zwint: ZW10 interactor

Probab=83.29  E-value=22  Score=34.06  Aligned_cols=62  Identities=16%  Similarity=0.281  Sum_probs=36.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      ..++|.+.++-.+....++..|.+....++..-..-+.+|+.|..++..|+.+--.-+++|.
T Consensus       118 ~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQ  179 (252)
T PF15556_consen  118 MEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQ  179 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666665566556666666666666665555566666666666666555444444443

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=83.10  E-value=15  Score=30.97  Aligned_cols=50  Identities=22%  Similarity=0.385  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          279 KQAECEELQARVETL--SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       279 Kq~~~eeLe~kv~~L--e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ...++..||.+++.|  ..+...|+-++..++.++..|..+.+.+...+.-|
T Consensus        47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL   98 (106)
T PF10805_consen   47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL   98 (106)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            355667777777777  67777777777777777777777777666555544

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK09039 hypothetical protein; Validated

Probab=83.09  E-value=4.6  Score=40.57  Aligned_cols=40  Identities=8%  Similarity=0.150  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ++..++.+..+.+.++..|+.+++.|+.++..|.+.|...
T Consensus       124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a  163 (343)
T PRK09039        124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS  163 (343)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333334444444444444444444444333

>PRK14140 heat shock protein GrpE; Provisional

Probab=83.09  E-value=2.8  Score=39.14  Aligned_cols=58  Identities=17%  Similarity=0.235  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS  340 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~  340 (352)
                      +++|+.++..|+.++..|+.++.++..+++-++....+=++.+.+.....-+.+|+..
T Consensus        39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpv   96 (191)
T PRK14140         39 LDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPA   96 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444443333333333333333333333333

>PF15058 Speriolin_N: Speriolin N terminus

Probab=82.98  E-value=3.1  Score=39.17  Aligned_cols=39  Identities=31%  Similarity=0.555  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .|.|.+++++|-.||++|++++..|        .||.+||.-|.+-+
T Consensus         7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ea~   45 (200)
T PF15058_consen    7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALGEAC   45 (200)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHhh
Confidence            4678889999999999999988654        45555555544443

>TIGR03545 conserved hypothetical protein TIGR03545

Probab=82.67  E-value=8.4  Score=41.38  Aligned_cols=64  Identities=19%  Similarity=0.359  Sum_probs=40.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNE-------NRNLRDELQRLSEECEKLTSENNSIKED  324 (352)
Q Consensus       261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~E-------N~~Lr~el~~L~~e~~~L~~EN~~Lk~~  324 (352)
                      +.-...+++..+|...+-+++.+++++++|+.|+..       ..+..++++.|+.+.+..+.....|+.+
T Consensus       171 ~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~  241 (555)
T TIGR03545       171 KSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND  241 (555)
T ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333456677788888888888999999999988874       2344555555555555444444443333

This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.61  E-value=6.2  Score=40.13  Aligned_cols=55  Identities=29%  Similarity=0.357  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      |.|.+++++.|....+.|++.-++|+.-...|+.+.+.|+.|...|...|.-|..
T Consensus       220 R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~  274 (365)
T KOG2391|consen  220 RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS  274 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3455666666666666666666666666666677777777777777666666554

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=82.56  E-value=5.6  Score=43.04  Aligned_cols=44  Identities=34%  Similarity=0.575  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      +++|+.+++.++.+...|..++..+..+++.++.++.+|.+++.
T Consensus       337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~  380 (594)
T PF05667_consen  337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK  380 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555444443

>PRK14127 cell division protein GpsB; Provisional

Probab=82.49  E-value=3.3  Score=35.57  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS  320 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~  320 (352)
                      +.++++...++.|..||..|+.++..|+.++..+..+...
T Consensus        30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~   69 (109)
T PRK14127         30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV   69 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4556666666666666666666666665555555554443

>TIGR02977 phageshock_pspA phage shock protein A

Probab=82.47  E-value=11  Score=35.40  Aligned_cols=56  Identities=11%  Similarity=0.187  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA  335 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~  335 (352)
                      ++.+..|+.++..++.....|+.+|..|+.++..++..-..|..+.........+.
T Consensus        98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~  153 (219)
T TIGR02977        98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVR  153 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777888888888888888888888888888777777776554433333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=82.40  E-value=6.2  Score=37.07  Aligned_cols=49  Identities=29%  Similarity=0.486  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ..++++|..-+..|+.+|..|..+...+.++...|..+...|.++..++
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl  114 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL  114 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3556666666666666666666665555555555554444444444433

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=82.36  E-value=16  Score=30.09  Aligned_cols=18  Identities=28%  Similarity=0.466  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 018643          310 ECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       310 e~~~L~~EN~~Lk~~L~~  327 (352)
                      +...|..+...|..++..
T Consensus        75 e~~~lk~~i~~le~~~~~   92 (108)
T PF02403_consen   75 EVKELKEEIKELEEQLKE   92 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=82.13  E-value=23  Score=33.01  Aligned_cols=48  Identities=23%  Similarity=0.484  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          281 AECEELQARVETLSNENRN---LRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~---Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .++++|+.++...+.....   ++.++..+..++..|+-|+..|..++..+
T Consensus        69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kl  119 (201)
T PF13851_consen   69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKL  119 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444433333332   33344444445555555555555544444

>PF13118 DUF3972: Protein of unknown function (DUF3972)

Probab=82.03  E-value=5.8  Score=34.99  Aligned_cols=46  Identities=26%  Similarity=0.363  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +....+-+..|+.||.-|+..+-.+++.++.=+.....|+++|..+
T Consensus        80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~  125 (126)
T PF13118_consen   80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM  125 (126)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            4445667888999999999999999999999999999999999865

>COG2919 Septum formation initiator [Cell division and chromosome partitioning]

Probab=81.97  E-value=23  Score=30.29  Aligned_cols=36  Identities=19%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643          296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  331 (352)
Q Consensus       296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~  331 (352)
                      ....|..++..++.+++.|..+|..|++++.+|..+
T Consensus        51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg   86 (117)
T COG2919          51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG   86 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            444445555555555566666666666666666554

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=81.97  E-value=12  Score=39.19  Aligned_cols=55  Identities=25%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643          276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE  332 (352)
Q Consensus       276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~  332 (352)
                      +.|+..++..+-++...|+.||.+  .++..|..+...|+.....|+..+.+|.+.+
T Consensus       280 e~rrhrEil~k~eReasle~Enlq--mr~qqleeentelRs~~arlksl~dklaee~  334 (502)
T KOG0982|consen  280 EERRHREILIKKEREASLEKENLQ--MRDQQLEEENTELRSLIARLKSLADKLAEED  334 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            455566666666666666666644  4556688888888888888888888887655

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=81.72  E-value=11  Score=42.80  Aligned_cols=47  Identities=34%  Similarity=0.491  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhcC
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEEC---------------EKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~---------------~~L~~EN~~Lk~~L~~l~g  330 (352)
                      +.|+.+|+.|++.+.+|.-.|+.|+.|.               .+|+.+|.+||+-|.+|+.
T Consensus       328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD  389 (1243)
T KOG0971|consen  328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD  389 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344455555555555555556665543               4677888999988888763

>TIGR02231 conserved hypothetical protein

Probab=81.30  E-value=19  Score=37.77  Aligned_cols=47  Identities=15%  Similarity=0.159  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      .+|.+-+..+.++..+|+.++..|..++..|+.+...|+.+|..+.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~  173 (525)
T TIGR02231       127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT  173 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34445555566677777777777777778888888888888777765

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.27  E-value=23  Score=33.98  Aligned_cols=43  Identities=21%  Similarity=0.360  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .+.+..|+....+++.+....++.+..|..|-..|+.++..+.
T Consensus        59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R  101 (230)
T PF10146_consen   59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR  101 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555444444444444444444444444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=81.26  E-value=5.8  Score=33.79  Aligned_cols=39  Identities=36%  Similarity=0.481  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +.|...+..|..++..+..+++.|+.++..+.++++.+.
T Consensus        76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk  114 (118)
T PF13815_consen   76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK  114 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666666666666666666654

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=81.14  E-value=4.2  Score=42.72  Aligned_cols=40  Identities=25%  Similarity=0.355  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      |+.|+.....-..+...|+++.+.|+.+|..|-++|++|+
T Consensus       274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ  313 (472)
T KOG0709|consen  274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ  313 (472)
T ss_pred             HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            5667777777777889999999999999999999999986

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=81.01  E-value=20  Score=33.10  Aligned_cols=67  Identities=21%  Similarity=0.345  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018643          270 ESARRSRLRKQA---ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN  336 (352)
Q Consensus       270 ESARrSR~RKq~---~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~  336 (352)
                      ..||..=.||+.   .++.|+..+..+......|+..|..|+.++..|+.+-..|+.+.........+..
T Consensus        84 dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~  153 (221)
T PF04012_consen   84 DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNE  153 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444433   3445556666666666666666666666666666666666666555444444433

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK14153 heat shock protein GrpE; Provisional

Probab=80.94  E-value=3.4  Score=38.68  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQ  305 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~  305 (352)
                      +++++|+.++..+.++.+.++.+..
T Consensus        47 ~e~~elkd~~lR~~AEfeN~rKR~~   71 (194)
T PRK14153         47 EEIESLKEQLFRLAAEFDNFRKRTA   71 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444443

>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function

Probab=80.92  E-value=0.5  Score=45.23  Aligned_cols=45  Identities=24%  Similarity=0.296  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI  321 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L  321 (352)
                      +.-+..+||.+.++..|+.-...|..++++|++++++|..||.+|
T Consensus       118 KDdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL  162 (243)
T PF08961_consen  118 KDDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL  162 (243)
T ss_dssp             ---------------------------------------------
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567788888888888888888888888888888888888888

; PDB: 2CRB_A.

>PRK14161 heat shock protein GrpE; Provisional

Probab=80.87  E-value=4.5  Score=37.34  Aligned_cols=54  Identities=15%  Similarity=0.212  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018643          289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP  342 (352)
Q Consensus       289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~  342 (352)
                      +++.|+.+...|+.++-++..+++-++....+=++++.+.....-+.+|+...|
T Consensus        27 ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~D   80 (178)
T PRK14161         27 EITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSD   80 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            333333333333333333333333333333333333333333334444444333

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=80.77  E-value=17  Score=37.95  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTS  316 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~  316 (352)
                      +.+.+..++..+|.+...|+.++..|.+++-.++.
T Consensus        42 ~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a   76 (459)
T KOG0288|consen   42 ESRAIKAKLQEKELELNRLQEENTQLNEERVREEA   76 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555544443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=80.60  E-value=11  Score=42.47  Aligned_cols=76  Identities=24%  Similarity=0.222  Sum_probs=53.1

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643          264 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN  341 (352)
Q Consensus       264 Rk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~  341 (352)
                      -+++.-++++.+-.....+..+|..+|+.+..+-..+..+.+.+...++.|+.|...|..+++.|...  +.++.+..
T Consensus       449 di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~--~~~~~qs~  524 (980)
T KOG0980|consen  449 DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT--LSNLAQSH  524 (980)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHH
Confidence            45566777777777777777777777777777777766677777777777777777777777777633  44444433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=80.60  E-value=32  Score=33.18  Aligned_cols=39  Identities=33%  Similarity=0.527  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +..++.|+..++.++..|+.++..|+..|..|..+|..+
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l  249 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL  249 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence            444444555555555555555555555555555555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma

Probab=80.23  E-value=8.7  Score=35.21  Aligned_cols=9  Identities=11%  Similarity=0.228  Sum_probs=3.6

Q ss_pred             HHHHHHhcC
Q 018643          322 KEDLSRLCG  330 (352)
Q Consensus       322 k~~L~~l~g  330 (352)
                      ..+|.+|..
T Consensus       108 ~~Kl~dmrn  116 (162)
T PF04201_consen  108 SRKLGDMRN  116 (162)
T ss_pred             HHHHHHHhc
Confidence            333444443

Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=80.08  E-value=26  Score=36.17  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 018643          303 ELQRLSEECEKLTSENNSIKEDL  325 (352)
Q Consensus       303 el~~L~~e~~~L~~EN~~Lk~~L  325 (352)
                      ++..|++++..|+.+...|.+++
T Consensus        74 ~~~~l~~~~~~~~~~~~~~~~~~   96 (425)
T PRK05431         74 EVKELKEEIKALEAELDELEAEL   96 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=80.07  E-value=8.4  Score=33.65  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLT  315 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~  315 (352)
                      .-+++|+.+++.|+-+...|.++-..|+++++.|+
T Consensus        70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq  104 (119)
T COG1382          70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQ  104 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555544444444444444443333333

>PRK14145 heat shock protein GrpE; Provisional

Probab=80.02  E-value=5.8  Score=37.27  Aligned_cols=56  Identities=18%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643          286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN  341 (352)
Q Consensus       286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~  341 (352)
                      |+.++..|+.+...|+.++-++..+++-++....+=++++.+.....-+.+|+..+
T Consensus        50 l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~  105 (196)
T PRK14145         50 LKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVM  105 (196)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33333333334344444444444333333333333333333333333344444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	1e-20
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	1e-19
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	7e-18
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	2e-17
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	2e-16
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	7e-16
2wt7_B	90	Transcription factor MAFB; transcription, transcri	3e-14
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	4e-14
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	2e-13
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	2e-13
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	5e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-05
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	3e-04
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	6e-04

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 83.2 bits (206), Expect = 1e-20
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316
           +K+ K+ + N+ +A R R +K+AE E L    + L  +N  L++    L++E + L  
Sbjct: 1   MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 80.5 bits (199), Expect = 1e-19
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 312
           KR+ R   NRE+AR SR +K+   + L+ RV  L N+N+ L +EL+ L +   
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 75.8 bits (187), Expect = 7e-18
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317
           KR+K  + NR +A RSR +++   + L+ + E LS+ N  L+ E+  L  E  +L   
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 74.4 bits (183), Expect = 2e-17
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
           KR+ R++ N+ +A + R R++   + LQA  + L +E   L+ E+  L +E EKL
Sbjct: 2   KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 72.0 bits (177), Expect = 2e-16
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
           K ++++  NR +A +SR RK      L+ +V+TL  +N  L      L E+  +L
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 71.6 bits (175), Expect = 7e-16
 Identities = 17/76 (22%), Positives = 36/76 (47%)

Query: 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 313
           ++  +LK+++R   NR  A   R+++  + EEL+ +   L  E   L  E   +  E + 
Sbjct: 31  EEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDA 90

Query: 314 LTSENNSIKEDLSRLC 329
           L S+  +++     + 
Sbjct: 91  LRSKYEALQNFARTVA 106

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 66.5 bits (162), Expect = 3e-14
 Identities = 14/69 (20%), Positives = 31/69 (44%)

Query: 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 313
            +   LK+++R   NR  A+  R ++  +   L+     L  +   L+ E+ RL+ E + 
Sbjct: 21  DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80

Query: 314 LTSENNSIK 322
              ++  + 
Sbjct: 81  YKVKSEKLA 89

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 65.8 bits (160), Expect = 4e-14
 Identities = 18/68 (26%), Positives = 32/68 (47%)

Query: 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
           +  +    KRK  NR + R  R RK+   + L+ +V TL   + +   E  +L ++  +L
Sbjct: 3   NSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62

Query: 315 TSENNSIK 322
             E   +K
Sbjct: 63  EEELRILK 70

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 64.2 bits (156), Expect = 2e-13
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
           D+   + + R++ N  + R+SR + +    E Q +V  L+ EN  L+ ++++LS E   L
Sbjct: 10  DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69

Query: 315 TSENNSIKEDLSRLCG 330
            +    + E L    G
Sbjct: 70  RNLFKQLPEPLLASSG 85

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 63.7 bits (155), Expect = 2e-13
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 247 IMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQR 306
           I+P+    D   LKR +    N E+ARRSR RK    ++L+ +VE L ++N +L +E+ R
Sbjct: 2   IVPES--SDPAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVAR 55

Query: 307 LSE 309
           L +
Sbjct: 56  LKK 58

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 57.2 bits (138), Expect = 5e-11
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314
           D+   + + R++ N  + R+SR + +    E Q +V  L+ EN  L+ ++++LS E   L
Sbjct: 10  DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 15/76 (19%), Positives = 36/76 (47%)

Query: 253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 312
           +  +RELK+ K +  + E  ++  +  + +  +LQ +++  + E ++L +++  L     
Sbjct: 900 MMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS 959

Query: 313 KLTSENNSIKEDLSRL 328
             T +  S  E L   
Sbjct: 960 TETEKLRSDVERLRMS 975

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 8e-06
 Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 312
           +Q E EL  +  +   R +A++  L +     E++AR+E     ++ L+ E +++ ++  
Sbjct: 901 LQAETELYAEAEEMRVRLAAKKQELEEILH--EMEARIEEEEERSQQLQAEKKKMQQQML 958

Query: 313 KLTSENNSIKEDLSRL 328
            L  +    +    +L
Sbjct: 959 DLEEQLEEEEAARQKL 974

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 15/87 (17%), Positives = 39/87 (44%), Gaps = 15/87 (17%)

Query: 257  RELKRQKRKQSNRESARRSRLRK-QAECEELQARVE--------------TLSNENRNLR 301
             E++ +  ++  R    ++  +K Q +  +L+ ++E              T   + + + 
Sbjct: 930  HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989

Query: 302  DELQRLSEECEKLTSENNSIKEDLSRL 328
            D++  + ++  KLT E   ++E +S L
Sbjct: 990  DDILIMEDQNNKLTKERKLLEERVSDL 1016

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 249 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 308
            D+ +  E E  R+ R++      +R RL++           E      ++L +  QR S
Sbjct: 77  ADR-LTQEPESIRKWREE------QRKRLQELDA-ASKVMEQEWREKAKKDLEEWNQRQS 128

Query: 309 EECEKLTSENNSIKE 323
           E+ EK    NN I +
Sbjct: 129 EQVEK-NKINNRIAD 142

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A Length = 251

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 232 RTNPSGASPAVAPAGIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVE 291
           R+   G       +     +  Q  RE    + +  N   +     R   +  +L+AR++
Sbjct: 6   RSEAFGIPRDSPLSSGDAAELEQLRREAAVLREQLENAVGSHAPT-RSARDIHQLEARID 64

Query: 292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 333
           +L+  N  L + L+   ++   L       +E++ RL  P +
Sbjct: 65  SLAARNSKLMETLKEARQQLLAL-------REEVDRLGQPPS 99

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A Length = 104

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 250 DQWIQDERELKRQKRKQSNRES-ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 308
            + I++  EL++   +  +  +  R    R  A   EL+  ++ L  EN  L  E +   
Sbjct: 33  QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92

Query: 309 EECEKLTSE 317
           ++     S+
Sbjct: 93  QQERAPLSK 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.48
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.41
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.38
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.35
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.28
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	99.19
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	99.17
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.96
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.88
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.81
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.54
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.11
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	96.79
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	96.78
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	96.56
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	96.29
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.97
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.83
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	95.63
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	95.45
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	95.44
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	95.16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.05
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	95.01
3m48_A	33	General control protein GCN4; leucine zipper, synt	94.96
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	94.8
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	94.77
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	94.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.63
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	94.39
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.35
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	94.35
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	94.18
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	94.14
2wt7_B	90	Transcription factor MAFB; transcription, transcri	94.11
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	94.11
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	94.07
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	93.99
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	93.71
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	93.68
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	93.6
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	93.58
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	93.42
2bni_A	34	General control protein GCN4; four helix bundle, a	93.4
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	93.4
1uo4_A	34	General control protein GCN4; four helix bundle, c	93.27
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	93.23
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	93.19
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	93.16
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	93.13
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	93.04
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	93.01
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	92.98
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	92.97
2hy6_A	34	General control protein GCN4; protein design, para	92.91
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	92.74
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	92.58
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	92.53
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	92.51
2wvr_A	209	Geminin; DNA replication license, DNA replication	92.39
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	92.04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.01
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	91.85
1fmh_A	33	General control protein GCN4; coiled coil, leucine	91.78
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	91.56
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	91.16
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	91.08
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	91.07
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	91.04
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	90.77
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	90.56
3u06_A	412	Protein claret segregational; motor domain, stalk	90.38
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	90.02
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	89.95
3htk_A	60	Structural maintenance of chromosomes protein 5; S	89.83
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	89.74
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	89.64
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	89.6
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	89.36
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	89.36
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	89.34
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	89.27
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	89.23
1a93_B	34	MAX protein, coiled coil, LZ; leucine zipper, 2D s	89.17
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	88.99
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	88.73
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	88.68
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	88.28
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	88.08
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	88.0
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	87.98
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	87.84
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	87.59
2j5u_A	255	MREC protein; bacterial cell shape determining pro	87.55
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	87.41
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	87.33
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	87.24
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	86.6
4ani_A	213	Protein GRPE; chaperone cycle, complementary assay	86.58
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	86.53
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	86.5
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	86.49
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	86.48
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	86.18
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	86.17
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	86.06
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	85.99
2xv5_A	74	Lamin-A/C; structural protein, intermediate filame	85.95
3htk_A	60	Structural maintenance of chromosomes protein 5; S	85.8
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	85.73
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	85.6
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	85.23
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	85.21
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	85.14
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	85.1
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	85.05
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	84.99
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	84.89
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	84.39
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	84.35
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	84.32
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	84.28
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	84.19
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	84.1
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	83.85
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	83.81
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	83.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	83.74
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	83.71
1gk6_A	59	Vimentin; intermediate filament, dimer, parallel c	83.6
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	83.54
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	83.45
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	83.33
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	83.28
3ra3_B	28	P2F; coiled coil domain, fiber, KIH interactions,	83.08
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	83.03
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	82.94
2wuj_A	57	Septum site-determining protein diviva; bacterial	82.91
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	82.71
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	82.44
1lwu_C	323	Fibrinogen gamma chain; heterotrimer, protein-pept	82.29
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	82.26
1g6u_A	48	Domain swapped dimer; designed three helix bundle,	81.88
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	81.74
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	81.73
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	81.72
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	81.45
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	81.09
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	81.02
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	81.02
3bas_A	89	Myosin heavy chain, striated muscle/general contro	80.67
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	80.63
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	80.59
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	80.25
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	80.05

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.48  E-value=4e-14  Score=105.20  Aligned_cols=53  Identities=40%  Similarity=0.553  Sum_probs=49.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE  312 (352)
Q Consensus       260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~  312 (352)
                      ||++|+++||+||++||.||++|+++||.+|..|+.||..|+.++..|++++.
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~   53 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS   53 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            58899999999999999999999999999999999999999999999877653

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.41  E-value=1.3e-12  Score=99.10  Aligned_cols=58  Identities=33%  Similarity=0.460  Sum_probs=52.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE  317 (352)
Q Consensus       260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E  317 (352)
                      ||++|+++||+||++||.||++++++|+.+|+.|+.+|..|+.+|..|+.++..|+.-
T Consensus         2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~   59 (63)
T 2wt7_A            2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI   59 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999998777777666543

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.38  E-value=1.6e-12  Score=97.81  Aligned_cols=57  Identities=33%  Similarity=0.457  Sum_probs=51.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS  316 (352)
Q Consensus       260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~  316 (352)
                      ||++|+++||+||++||.||++++++|+.+++.|+.+|..|+.+|..|+.++..|+.
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~   57 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ   57 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999777666666654

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.35  E-value=1.4e-12  Score=98.48  Aligned_cols=57  Identities=30%  Similarity=0.444  Sum_probs=50.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS  316 (352)
Q Consensus       260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~  316 (352)
                      |++||+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|+.++..|+.
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~   57 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ   57 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999777766666544

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.28  E-value=4.9e-12  Score=96.32  Aligned_cols=52  Identities=35%  Similarity=0.493  Sum_probs=44.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE  312 (352)
Q Consensus       261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~  312 (352)
                      .++++.+||+|||+||.||++++++|+.+|+.|+.+|..|..++..|++++.
T Consensus        10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444455999999999999999999999999999999999999988877653

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=99.19  E-value=3.1e-11  Score=91.70  Aligned_cols=57  Identities=30%  Similarity=0.478  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT  315 (352)
Q Consensus       259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~  315 (352)
                      .|+++++++||.||+|||.||++++++|+.+++.|+.+|..|+.+|..|+.|+..|+
T Consensus         1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk   57 (63)
T 1ci6_A            1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK   57 (63)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368889999999999999999999999999999999999999999977666655554

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=99.17  E-value=8.1e-11  Score=91.49  Aligned_cols=61  Identities=30%  Similarity=0.358  Sum_probs=55.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          262 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  322 (352)
Q Consensus       262 ~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  322 (352)
                      .||+.+||.|+|.+|.||++||.+||.+|..|+.++..|..++..|+.++..|..||..|+
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999999999999999888888888888888764

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.96  E-value=2e-09  Score=86.84  Aligned_cols=63  Identities=27%  Similarity=0.350  Sum_probs=50.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE  323 (352)
Q Consensus       261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  323 (352)
                      ...|+.+|.+||++||.++++...+++.++..|+.||..|+.+|..|+.++..|+.-..+|-.
T Consensus        16 Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~   78 (87)
T 1hjb_A           16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE   78 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence            666788899999999999999999999999999999999999997666555555544444333

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.88  E-value=5.6e-09  Score=82.66  Aligned_cols=55  Identities=29%  Similarity=0.389  Sum_probs=48.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT  315 (352)
Q Consensus       261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~  315 (352)
                      ...|+.+|.+||++||.++++...+++.++..|+.||..|+.+|..|+.++..|+
T Consensus        16 Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr   70 (78)
T 1gu4_A           16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556888999999999999999999999999999999999999977666555554

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.81  E-value=1.1e-10  Score=97.35  Aligned_cols=63  Identities=25%  Similarity=0.343  Sum_probs=47.7

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT  315 (352)
Q Consensus       253 ~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~  315 (352)
                      ..+..++|.+||+++||.+|+.||.||.+++++||.++..|+.+.+.|..++..|+.++..|+
T Consensus        30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk   92 (107)
T 3a5t_A           30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALR   92 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458889999999999999999999999999999987766666655555555544444433333

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.54  E-value=4.3e-07  Score=73.67  Aligned_cols=69  Identities=22%  Similarity=0.359  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       254 ~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .+-.++|..||..+||.+|+-||.||.+.+++||.++..|..+.+.|+       .+...+..|...++.++..|.
T Consensus        21 eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~-------~e~~~~~~e~d~~k~k~~~L~   89 (90)
T 2wt7_B           21 DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLK-------QEVSRLARERDAYKVKSEKLA   89 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence            345678888999999999999999999999888876666655555555       444556666666777776664

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.11  E-value=0.00094  Score=46.81  Aligned_cols=36  Identities=36%  Similarity=0.493  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT  315 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~  315 (352)
                      |+|+.+||.++..|+..|.+|..+|..|++|+..|+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR   37 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR   37 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            589999999999999999999888876655555544

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=96.79  E-value=0.0048  Score=44.98  Aligned_cols=48  Identities=42%  Similarity=0.551  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      .++|-++|+.|+.||..||.|++.=..++.+|+.|-.-+|+-|+.|.+
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~   52 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence            578999999999999999999999999999999999999999988763

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=96.78  E-value=0.00053  Score=55.44  Aligned_cols=32  Identities=19%  Similarity=0.442  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018643          257 RELKRQKRKQSNRESARRSRLRKQAECEELQA  288 (352)
Q Consensus       257 re~KR~RRk~~NRESARrSR~RKq~~~eeLe~  288 (352)
                      ..+|..||+.+||.+|++||+||.+.+++|+.
T Consensus        59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            34668889999999999999999998888753

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=96.56  E-value=0.0076  Score=47.90  Aligned_cols=55  Identities=31%  Similarity=0.377  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ  339 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~  339 (352)
                      +.-|+.+++.|+.+|..|..++..++...+.|..||.+|+++.....  ++|+.|.-
T Consensus        22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq--~Rl~~LLg   76 (81)
T 2jee_A           22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALLG   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            44455566666666666666666655555556666666666655554  55554443

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=96.29  E-value=0.013  Score=48.15  Aligned_cols=49  Identities=24%  Similarity=0.308  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          281 AECEELQARVETLSNENRNLRD-------ELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~-------el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +++-+||.++..|+.||..|+.       +|..|..+++.|+.||..|+.+-+.-.
T Consensus        37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~   92 (104)
T 3s9g_A           37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR   92 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4567789999999999988887       788888899999999999887765543

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.97  E-value=0.026  Score=44.86  Aligned_cols=52  Identities=33%  Similarity=0.440  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      =|-++++|+.+-..|..+++.++.....|..++++|+.|...+.++|..|-|
T Consensus        25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg   76 (81)
T 2jee_A           25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999988865

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.83  E-value=0.037  Score=47.68  Aligned_cols=52  Identities=17%  Similarity=0.273  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +.+.+++.|+.+++.+..|+..|+.++..++.+++.+..++..|+.++..|.
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~  123 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ  123 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666666666666666666666666666666666666655555554

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=95.63  E-value=0.046  Score=41.07  Aligned_cols=39  Identities=36%  Similarity=0.544  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE  323 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  323 (352)
                      .-|.+|.+|..-|..|.+|+..|+.+++.|.+||..|+.
T Consensus        24 aSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           24 TSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            348899999999999999999999999999999999973

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=95.45  E-value=0.073  Score=39.47  Aligned_cols=55  Identities=22%  Similarity=0.320  Sum_probs=37.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643          263 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE  338 (352)
Q Consensus       263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~  338 (352)
                      +++-+||.++|+||.|=++.++....                     --..-.+||.+|+--|++++.--++..+.
T Consensus         4 ~kryknr~asrk~rakfkn~lqh~r~---------------------vaaaks~en~rlr~l~kqmcpsldvdsii   58 (63)
T 2c9l_Y            4 IKRYKNRVAARKSRAKFKQLLQHYRE---------------------VAAAKSSENDRLRLLLKQMCPSLDVDSII   58 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHCTTCCHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhhcccchHHHHHHHHhCCcccccccC
Confidence            34567999999999987765554322                     22344567888888888888665555443

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=95.44  E-value=0.043  Score=45.18  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          306 RLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       306 ~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      ..+++++.|+.|+.+|+++|..|..
T Consensus        72 ~~~~~~e~Lq~E~erLr~~v~~lEe   96 (100)
T 1go4_E           72 RLREDHSQLQAECERLRGLLRAMER   96 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556777788888888888877764

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=95.16  E-value=0.078  Score=38.22  Aligned_cols=41  Identities=20%  Similarity=0.302  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      ++++..|+.-|..|..++..|+..|..++.|+.+|+.-|++
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq   43 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ   43 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999988765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.05  E-value=0.22  Score=50.04  Aligned_cols=48  Identities=23%  Similarity=0.309  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .++++.++.+.|+.|+..|+.+++..++...+|+.|+..++++|+++.
T Consensus       531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~  578 (597)
T 3oja_B          531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE  578 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555566666666666666666666666666666666654

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=95.01  E-value=0.27  Score=43.19  Aligned_cols=77  Identities=14%  Similarity=0.034  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643          256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE  332 (352)
Q Consensus       256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~  332 (352)
                      .-+.+..++.++.+..-++.=.....++.+-..-++.|+.|...|+-++..++.+...|+.||..|-+++.+..+.+
T Consensus        64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qE  140 (152)
T 3a7p_A           64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKE  140 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555555555555444444555666666778899999999999999999999999999999988877665443

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=94.96  E-value=0.026  Score=37.68  Aligned_cols=27  Identities=41%  Similarity=0.622  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSE  309 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~  309 (352)
                      +.+||.+|+.|-.+|..|..++.+|+.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            568999999999999999999988764

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=94.80  E-value=0.07  Score=39.53  Aligned_cols=41  Identities=20%  Similarity=0.295  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      ++++..|++.|..|..++..|+..|...+.|+.+|..-|++
T Consensus        10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq   50 (58)
T 3a2a_A           10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ   50 (58)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888899999999999999999999999999999887765

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=94.77  E-value=0.036  Score=37.13  Aligned_cols=28  Identities=29%  Similarity=0.482  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSE  309 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~  309 (352)
                      ++.+||.+|+.|-.+|..|..++.+|+.
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~   29 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKX   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            5678999999999999988888887764

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=94.70  E-value=0.087  Score=39.50  Aligned_cols=42  Identities=24%  Similarity=0.352  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      -..+...|+.+...|..+...|+.++..|+.|+..|+.-|.+
T Consensus        21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e   62 (63)
T 1ci6_A           21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345677888888888888888888888888888888877654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.63  E-value=0.16  Score=51.07  Aligned_cols=8  Identities=38%  Similarity=0.501  Sum_probs=3.1

Q ss_pred             hhchhhcC
Q 018643          334 VANLEQSN  341 (352)
Q Consensus       334 ~~~L~~~~  341 (352)
                      +..|++.+
T Consensus       574 ~~~l~~~~  581 (597)
T 3oja_B          574 VKQLEAKK  581 (597)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            33444333

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=94.39  E-value=0.08  Score=35.88  Aligned_cols=30  Identities=27%  Similarity=0.507  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEEC  311 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~  311 (352)
                      ++.+||.+|+.|-.+|..|..++.+|+.-+
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll   31 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN   31 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            567899999999999999999998886544

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.35  E-value=0.25  Score=42.40  Aligned_cols=49  Identities=18%  Similarity=0.213  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +.+++++.++..|..++..++.+++.+++++..|+.++..|..++.+|.
T Consensus        82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555555666666666666555553

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=94.35  E-value=0.18  Score=35.40  Aligned_cols=45  Identities=20%  Similarity=0.302  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      .+.+|+.+|..|+.||+.|+.+.---+.-+.-|+.|...|+.+|+
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie   48 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE   48 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence            356789999999999999998877777777888888888887764

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=94.18  E-value=0.083  Score=41.75  Aligned_cols=48  Identities=25%  Similarity=0.419  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +++++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|..+.
T Consensus         7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~   54 (79)
T 3cvf_A            7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA   54 (79)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777888888888888888888888888877777777777666654

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=94.14  E-value=0.24  Score=39.46  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          294 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      -.||..|..+|..|++++..|+.+|..|++-....
T Consensus        45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~   79 (83)
T 1uii_A           45 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV   79 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999999999998766544

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=94.11  E-value=0.45  Score=38.35  Aligned_cols=54  Identities=15%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          273 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       273 RrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +|-|++-+-|...=..+-  + .+...|..++..|..+.+.|+.||.++..++..+.
T Consensus        29 ~RRtlKNRgyAq~CR~Kr--~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k   82 (90)
T 2wt7_B           29 KRRTLKNRGYAQSCRYKR--V-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK   82 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455554444322211  1 23455666666667777888888888887777664

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=94.11  E-value=0.062  Score=35.95  Aligned_cols=28  Identities=11%  Similarity=0.277  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSE  309 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~  309 (352)
                      ++.+||.+|+.|-.+|..|..++.+|+.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~   29 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            5678999999999999999988888764

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=94.07  E-value=0.071  Score=36.14  Aligned_cols=31  Identities=35%  Similarity=0.544  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECE  312 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~  312 (352)
                      ++.+||.+|+.|..+|..|..++.+|+..+.
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~   32 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKENA   32 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            4678999999999999999999988866543

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=93.99  E-value=0.14  Score=40.12  Aligned_cols=50  Identities=18%  Similarity=0.173  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      +++++||.++..++.-.+.|-..|...+.++..|+.+...|.++|..+..
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~   63 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS   63 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            57899999999999999999999999999999999999999999988763

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=93.71  E-value=0.27  Score=41.45  Aligned_cols=42  Identities=33%  Similarity=0.427  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +.+|+.|+.|+..|..+|..+..+.+.|+.+|..|..+|..-
T Consensus        70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~  111 (121)
T 3mq7_A           70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK  111 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence            345778888888888888888888888888888888877654

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=93.68  E-value=0.084  Score=35.15  Aligned_cols=27  Identities=7%  Similarity=0.357  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSE  309 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~  309 (352)
                      +.+||.+|+.|-.+|..|..++.+|+.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~   28 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKX   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            568899999999999988888888764

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=93.60  E-value=0.18  Score=39.90  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .||..|..+|+.+++++..|+.||..|++-+...
T Consensus        34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~   67 (79)
T 2zxx_A           34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV   67 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788899999999999999999988888776655

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=93.58  E-value=0.28  Score=35.67  Aligned_cols=37  Identities=24%  Similarity=0.427  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNS  320 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~  320 (352)
                      .+|+.++..|...|..|..-+...+.++..|+.|...
T Consensus        12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~   48 (51)
T 3m91_A           12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR   48 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666655555555444444444444433

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=93.42  E-value=0.47  Score=34.95  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  325 (352)
Q Consensus       288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L  325 (352)
                      ..+..|+.+...|..+...|..++..|+.|+..|+..|
T Consensus        22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34666666777777777777777777777777776655

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=93.40  E-value=0.091  Score=35.24  Aligned_cols=28  Identities=14%  Similarity=0.461  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSE  309 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~  309 (352)
                      ++.+||.+|+.|-.+|..|..++.+|+.
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            5678999999999999999888888764

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=93.40  E-value=0.13  Score=37.64  Aligned_cols=32  Identities=34%  Similarity=0.475  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      +.+.|+.++..|+.+++.|+.++..|+.+|..
T Consensus        20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~   51 (53)
T 2yy0_A           20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ   51 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33444444455555556666666666666653

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=93.27  E-value=0.098  Score=35.08  Aligned_cols=28  Identities=14%  Similarity=0.362  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSE  309 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~  309 (352)
                      ++.+||.+|+.|-.+|..|..++.+|+.
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~   29 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4678899999999999999888888764

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=93.23  E-value=0.61  Score=37.28  Aligned_cols=30  Identities=30%  Similarity=0.305  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEEC  311 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~  311 (352)
                      ++++|+.+-..|+.++..|..++..|+.-+
T Consensus        44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll   73 (87)
T 1hjb_A           44 KVLELTAENERLQKKVEQLSRELSTLRNLF   73 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444333

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=93.19  E-value=0.27  Score=38.21  Aligned_cols=46  Identities=20%  Similarity=0.403  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|..+.
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~   48 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL   48 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777777777777777777766666666666553

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=93.16  E-value=0.14  Score=34.84  Aligned_cols=30  Identities=30%  Similarity=0.502  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          294 SNENRNLRDELQRLSEECEKLTSENNSIKE  323 (352)
Q Consensus       294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  323 (352)
                      -.||+.|..+|+.-.+++..|+.||.+|++
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E   35 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKELAE   35 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence            468999999999999999999999999875

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=93.13  E-value=0.076  Score=50.08  Aligned_cols=41  Identities=22%  Similarity=0.413  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  322 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  322 (352)
                      ++.+|+.++..|...|..|..++..+++++..|+.|+.+|+
T Consensus        55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~   95 (251)
T 3m9b_A           55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG   95 (251)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34556666666666666666666555555555555544443

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=93.04  E-value=0.32  Score=34.06  Aligned_cols=36  Identities=25%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  325 (352)
Q Consensus       290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L  325 (352)
                      +..|+.+...|..++..|.+.+..|..||..|+.-|
T Consensus         5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A            5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            345566666666666666666666666666665544

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=93.01  E-value=0.9  Score=33.76  Aligned_cols=36  Identities=31%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  325 (352)
Q Consensus       290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L  325 (352)
                      +..|+.+...|..+...|+.++..|+.|...|+..|
T Consensus        25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l   60 (63)
T 2wt7_A           25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555566665555555555555555555544

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=92.98  E-value=0.39  Score=34.94  Aligned_cols=43  Identities=16%  Similarity=0.244  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +.++..|+.++..|..++..|.+.+...+.|...|+++|.+|.
T Consensus         8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La   50 (51)
T 3m91_A            8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG   50 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6677788888888888888888888888889889988888773

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=92.97  E-value=0.79  Score=35.89  Aligned_cols=27  Identities=33%  Similarity=0.372  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLS  308 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~  308 (352)
                      ++++|+.+-..|+.++..|..++..|+
T Consensus        44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr   70 (78)
T 1gu4_A           44 KVLELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444443

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=92.91  E-value=0.12  Score=34.63  Aligned_cols=28  Identities=29%  Similarity=0.493  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSE  309 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~  309 (352)
                      ++.+||.+|+.|-.+|..|..++.+|++
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~   29 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4678999999999999999999888865

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=92.74  E-value=0.14  Score=34.04  Aligned_cols=27  Identities=15%  Similarity=0.292  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSE  309 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~  309 (352)
                      +.+||.+|+.|-.+|..|..++.+|+.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~   28 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            567899999998888888888877754

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=92.58  E-value=0.24  Score=41.42  Aligned_cols=45  Identities=11%  Similarity=0.179  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ..|+.++..|+..+..|+..|..|...+..|+...+....-|.++
T Consensus        38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~   82 (111)
T 2v66_B           38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF   82 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence            344555555555555555555555555555554444444444444

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=92.53  E-value=0.5  Score=39.03  Aligned_cols=47  Identities=17%  Similarity=0.184  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      ..++++++.+..|+.|+.....+++.++..+..|..+...|+.+|..
T Consensus        37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q   83 (103)
T 4h22_A           37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ   83 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555544

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=92.51  E-value=0.0099  Score=48.03  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHH
Q 018643          257 RELKRQKRKQSNRESARRSRLRKQA  281 (352)
Q Consensus       257 re~KR~RRk~~NRESARrSR~RKq~  281 (352)
                      ..++..||+-+||.+|++||+||.+
T Consensus        63 ~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           63 ALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3467888999999999999999864

>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}

Probab=92.39  E-value=0.35  Score=44.31  Aligned_cols=28  Identities=32%  Similarity=0.553  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          296 ENRNLRDELQRLSEECEKLTSENNSIKE  323 (352)
Q Consensus       296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  323 (352)
                      ||..|..+|..|++++..|+.||.+|++
T Consensus       116 EN~~Lh~~ie~l~eEi~~LkeEn~eLke  143 (209)
T 2wvr_A          116 ENEKLHKEIEQKDNEIARLKKENKELAE  143 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444443

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=92.04  E-value=0.28  Score=35.79  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          288 ARVETLSNENRNLRDELQRLSEECEKLTSENN  319 (352)
Q Consensus       288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~  319 (352)
                      ..++.|+.||..|+.++..|+++++.|+.+..
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677777777777777777777777776543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.01  E-value=0.88  Score=50.47  Aligned_cols=15  Identities=27%  Similarity=0.430  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHh
Q 018643          314 LTSENNSIKEDLSRL  328 (352)
Q Consensus       314 L~~EN~~Lk~~L~~l  328 (352)
                      |+.||..|+.++.+|
T Consensus      1028 L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A         1028 LKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444333

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=91.85  E-value=0.93  Score=34.84  Aligned_cols=28  Identities=29%  Similarity=0.404  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECE  312 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~  312 (352)
                      +|+.....|..||..|+.+|..|..++.
T Consensus        40 ~le~~~~~l~~en~~Lr~~i~~L~~El~   67 (70)
T 1gd2_E           40 TLKELHSSTTLENDQLRQKVRQLEEELR   67 (70)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444433

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=91.78  E-value=0.21  Score=32.53  Aligned_cols=30  Identities=33%  Similarity=0.568  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEEC  311 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~  311 (352)
                      ++..|+.+|.+.+.||-+|.+++..|..+|
T Consensus         2 evaqlekevaqaeaenyqleqevaqlehec   31 (33)
T 1fmh_A            2 EVAQLEKEVAQAEAENYQLEQEVAQLEHEC   31 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            356788889999999999988888887776

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=91.56  E-value=0.71  Score=35.75  Aligned_cols=34  Identities=15%  Similarity=0.312  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      ...|+.++..|+.+.+.|+.+|..|+.+|..|.+
T Consensus        49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~   82 (83)
T 1nkp_B           49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4457777777888888888889999988888764

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=91.16  E-value=0.56  Score=42.47  Aligned_cols=8  Identities=50%  Similarity=0.538  Sum_probs=3.2

Q ss_pred             hhhchhhc
Q 018643          333 AVANLEQS  340 (352)
Q Consensus       333 ~~~~L~~~  340 (352)
                      .|++|++.
T Consensus       110 ~ireLEq~  117 (189)
T 2v71_A          110 YVRELEQA  117 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            34444443

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=91.08  E-value=1.9  Score=34.07  Aligned_cols=56  Identities=18%  Similarity=0.230  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhch
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL  337 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L  337 (352)
                      -+-+|..+++.|+.|+..||-+++.+..+++.|......+-..|...-....++.|
T Consensus        21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~~~~~~~   76 (83)
T 2xdj_A           21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQL   76 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            34668888888888888888888888888888888877777777655444333333

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=91.07  E-value=0.93  Score=33.94  Aligned_cols=36  Identities=17%  Similarity=0.189  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  325 (352)
Q Consensus       290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L  325 (352)
                      ...-+.....|..++..|+.++..|..|...|+++|
T Consensus        25 R~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           25 RARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566666666666666666666666666554

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=91.04  E-value=2.4  Score=35.63  Aligned_cols=47  Identities=19%  Similarity=0.292  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          275 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI  321 (352)
Q Consensus       275 SR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L  321 (352)
                      ....-+.++.+|+.+|..|+.|...-+........+|+.|+.|+..|
T Consensus        34 l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l   80 (120)
T 3i00_A           34 MKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL   80 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566667777777777777777766666655555555555555544

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=90.77  E-value=0.24  Score=46.65  Aligned_cols=56  Identities=16%  Similarity=0.233  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchhhcCC
Q 018643          287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNP  342 (352)
Q Consensus       287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~~~~~  342 (352)
                      +.++..|+.++..|..++..|..++..|+.|+.+|+++|.+|.. +-.+..+...++
T Consensus        53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~d  109 (251)
T 3m9b_A           53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHD  109 (251)
T ss_dssp             CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcC
Confidence            67889999999999999999999999999999999999999976 444555544443

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=90.56  E-value=0.79  Score=45.40  Aligned_cols=53  Identities=15%  Similarity=0.262  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP  331 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~  331 (352)
                      .++++++|+++++.|+.++..|..++..|++++...+.+-+.|..+|.+|.|.
T Consensus         8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn   60 (403)
T 4etp_A            8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN   60 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            45667777777778888888888888888888888788888888888888753

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=90.38  E-value=0.81  Score=45.56  Aligned_cols=51  Identities=22%  Similarity=0.233  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      .+++++|+++++.|++++..++.++..+++++.+...+.+.|..+|.+|.+
T Consensus         9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g   59 (412)
T 3u06_A            9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD   59 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            356777888888888888888888888888888888888888889988875

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=90.02  E-value=3.2  Score=32.19  Aligned_cols=66  Identities=23%  Similarity=0.282  Sum_probs=39.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          263 KRKQSNRESARRSRLRKQAECEELQARVETL---SNENRNLR---DELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~L---e~EN~~Lr---~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .|+.....+-|+-|.+=...+.+|..-|-..   ......|.   .-|..|+.+...|..|+..|+.++...
T Consensus         5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~   76 (82)
T 1am9_A            5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS   76 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455555666666666566777776644321   01112222   235667777788888888888887765

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=89.95  E-value=2.1  Score=31.58  Aligned_cols=33  Identities=21%  Similarity=0.418  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ....|..++..|..++..|..+...|+.++..|
T Consensus        23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L   55 (62)
T 1jnm_A           23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL   55 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444333

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=89.83  E-value=2.2  Score=30.77  Aligned_cols=48  Identities=15%  Similarity=0.210  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      .+..++++..++..++.+...++.++..+.+.+...+.+...|+.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~   57 (60)
T 3htk_A           10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE   57 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555566666666666666666666655555554

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=89.74  E-value=3.6  Score=32.56  Aligned_cols=60  Identities=15%  Similarity=0.289  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          268 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       268 NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      |=.||=.+-.|-|   ..+.+++...+..|..+.++|.....++..|..|...|+.+|..|..
T Consensus        14 eLQSALeaEIqAK---Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~   73 (81)
T 1wt6_A           14 ELQEALEEEVLTR---QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4444444444444   24455667788889999999999999999999999999999998753

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=89.64  E-value=1.4  Score=34.98  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .||..|..+|+.+++++..|+.||.+|++-....
T Consensus        38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~   71 (83)
T 1wlq_A           38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV   71 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788888888888888888888888888765543

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=89.60  E-value=1.5  Score=33.99  Aligned_cols=27  Identities=22%  Similarity=0.335  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          280 QAECEELQARVETLSNENRNLRDELQR  306 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~  306 (352)
                      ...+++|+.++..++.++..|+.++..
T Consensus        39 d~~I~eLEk~L~ekd~eI~~LqseLDK   65 (72)
T 3nmd_A           39 DALIDELELELDQKDELIQMLQNELDK   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555544444443

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=89.36  E-value=4.6  Score=31.72  Aligned_cols=53  Identities=25%  Similarity=0.330  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      ...+++++.|.+--+.|..=-..|..-|.+|.++...|......|+.+...|.
T Consensus        21 ~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~   73 (78)
T 3iv1_A           21 DRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS   73 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567778777777777777777888888888888888888888888888775

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=89.36  E-value=1.8  Score=34.22  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      -+..|..+...|..+.+.|+.+|..|+.+|..|.+
T Consensus        53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~   87 (88)
T 1nkp_A           53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG   87 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35567777777888888899999999999988864

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=89.34  E-value=0.48  Score=31.73  Aligned_cols=28  Identities=14%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSE  309 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~  309 (352)
                      ++.+||.+|+.|-.++..|..++.+|++
T Consensus         2 RMnQledKvEel~~~~~~l~nEv~Rl~~   29 (34)
T 2r2v_A            2 KLKQVADKLEEVASKLYHNANELARVAK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4677888888888888888888877754

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=89.27  E-value=1.7  Score=35.03  Aligned_cols=21  Identities=10%  Similarity=0.270  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 018643          283 CEELQARVETLSNENRNLRDE  303 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~e  303 (352)
                      +.+|+..-..|..+...|..+
T Consensus        27 L~~lEke~~~l~~el~~le~E   47 (96)
T 3q8t_A           27 LEDVEKNRKVVAENLEKVQAE   47 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHH
Confidence            333333333333333333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=89.23  E-value=3.6  Score=34.29  Aligned_cols=62  Identities=18%  Similarity=0.246  Sum_probs=37.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 018643          267 SNRESARRSRLRKQAECEELQARVETLSN---ENRNLRDELQRLSEECE-------KLTSENNSIKEDLSRL  328 (352)
Q Consensus       267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~---EN~~Lr~el~~L~~e~~-------~L~~EN~~Lk~~L~~l  328 (352)
                      .|=.+|-+.=..|+..|++|++++..++.   .+..|+.++...+....       .|..|..+|..+|..|
T Consensus        31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L  102 (110)
T 2v4h_A           31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL  102 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence            34555666666677777777777777766   55567777666655544       3444444444444444

>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B

Probab=89.17  E-value=0.63  Score=31.25  Aligned_cols=29  Identities=14%  Similarity=0.341  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          300 LRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ++.++...+.++++|+.+|..|.+++..|
T Consensus         5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l   33 (34)
T 1a93_B            5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence            45555556666666666677776666554

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=88.99  E-value=0.65  Score=36.42  Aligned_cols=42  Identities=31%  Similarity=0.483  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      +|-.+|+.|..|+..|+.++..+++-...++..+..|.++|+
T Consensus        34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk   75 (77)
T 2w83_C           34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR   75 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344445555555555555555554444444444444444443

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=88.73  E-value=1.4  Score=34.43  Aligned_cols=55  Identities=22%  Similarity=0.234  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS  340 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~  340 (352)
                      ++|+.++..|+....-+..-|+.|...+.....+...|+.+|..|.  +.+.++...
T Consensus        10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~--~rl~~~~~~   64 (78)
T 3efg_A           10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRST   64 (78)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhc
Confidence            4688899999999999999999999999999999999999999887  666665543

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=88.68  E-value=1.4  Score=32.08  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          304 LQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       304 l~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +..|..++..|..||..|+.+|..|.
T Consensus        24 ~~~LE~~v~~L~~eN~~L~~~~~~L~   49 (55)
T 1dh3_A           24 VKSLENRVAVLENQNKTLIEELKALK   49 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555666666666665553

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=88.28  E-value=1.7  Score=48.25  Aligned_cols=39  Identities=26%  Similarity=0.311  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE  323 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~  323 (352)
                      +++.++..|+.|+..|+.++..+.++.+.|+.++..|++
T Consensus       981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~ 1019 (1080)
T 2dfs_A          981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555555555555555555555555544444443

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=88.08  E-value=3.9  Score=32.56  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          303 ELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       303 el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +|..-+.+++.|+.+..+++..|..|
T Consensus        52 el~~h~~ei~~le~~i~rhk~~i~~l   77 (84)
T 1gmj_A           52 EISHHAKEIERLQKEIERHKQSIKKL   77 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444444555555544

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=88.00  E-value=1  Score=46.45  Aligned_cols=42  Identities=17%  Similarity=0.254  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  322 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  322 (352)
                      ++.++|++++..|+.+...-...|..|+.-++.++.+.++|.
T Consensus       110 E~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE  151 (562)
T 3ghg_A          110 RVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE  151 (562)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444466666666665555544555555555555555544444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=87.98  E-value=6.6  Score=34.89  Aligned_cols=57  Identities=28%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          266 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       266 ~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +.-=+.-|+.|.+-.+.+.+|+.++..|+.|...++..       ...+..+|..|.++|..|.
T Consensus        75 Qa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~-------~~k~~~e~r~L~Ekl~~lE  131 (168)
T 3o0z_A           75 QAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN-------LEKVEGERKEAQDMLNHSE  131 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555555555555554444443       3444455555555544443

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=87.84  E-value=0.62  Score=36.06  Aligned_cols=30  Identities=10%  Similarity=0.151  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEE  310 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e  310 (352)
                      .|+..|+.++..|+.+...|+.++..|+.+
T Consensus        47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~   76 (83)
T 1nkp_B           47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQ   76 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444443333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=87.59  E-value=2.9  Score=32.32  Aligned_cols=47  Identities=21%  Similarity=0.302  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      .+++.++.++...+.++..+-.+|..|++.+..|+.+...+.++|..
T Consensus        20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~   66 (81)
T 1ic2_A           20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD   66 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444445555555555555555444444443

>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}

Probab=87.55  E-value=0.25  Score=46.08  Aligned_cols=39  Identities=23%  Similarity=0.239  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      |.++.+.|++||..|+.++.    +++.|+.||.+|++.|.-.
T Consensus        24 l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~~   62 (255)
T 2j5u_A           24 TYTENQHLKERLEELAQLES----EVADLKKENKDLKESLDIT   62 (255)
T ss_dssp             --CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCc
Confidence            33344444444444444433    3367888999998876643

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=87.41  E-value=10  Score=30.55  Aligned_cols=23  Identities=4%  Similarity=0.163  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 018643          277 LRKQAECEELQARVETLSNENRN  299 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~  299 (352)
                      .++-.++..|.+++..|+.+...
T Consensus        40 ~~~E~Ei~sL~kk~~~lE~eld~   62 (101)
T 3u1c_A           40 KQLEDDIVQLEKQLRVTEDSRDQ   62 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444443333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=87.33  E-value=2.9  Score=34.12  Aligned_cols=43  Identities=16%  Similarity=0.219  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          286 LQARVETLSNENRNLRDE--------LQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       286 Le~kv~~Le~EN~~Lr~e--------l~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .+.+...++.|.+.|...        |..-+.+...++..|..|+++|.+.
T Consensus        45 aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~   95 (97)
T 2eqb_B           45 AEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK   95 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344444444444444332        3444667777888888888888764

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=87.24  E-value=1.1  Score=34.99  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          300 LRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      |+.+...|..+++.|+.||..|+.+|.
T Consensus        52 L~~~~~~l~~e~~~L~~e~~~L~~~L~   78 (80)
T 1nlw_A           52 LEDSDRKAVHQIDQLQREQRHLKRQLE   78 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444555555555555554

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=86.60  E-value=9.4  Score=29.38  Aligned_cols=61  Identities=20%  Similarity=0.271  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          268 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       268 NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ..+.|..--..-...+.+++.++..++.+...|..++..|..+++.+.........+|..-
T Consensus        14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea   74 (81)
T 1ic2_A           14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555667777778888888888888888888888888877777777776654

>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}

Probab=86.58  E-value=1.3  Score=40.70  Aligned_cols=60  Identities=12%  Similarity=0.139  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP  342 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~  342 (352)
                      ++.|+.++..|+.++..|+.++-++..+++-++....+=++.+.+.....-+.+|+..+|
T Consensus        61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlD  120 (213)
T 4ani_A           61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLD  120 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            344455555555555555555555555555555555555555555555555555554443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=86.53  E-value=6.9  Score=35.31  Aligned_cols=16  Identities=6%  Similarity=0.171  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHHh
Q 018643          313 KLTSENNSIKEDLSRL  328 (352)
Q Consensus       313 ~L~~EN~~Lk~~L~~l  328 (352)
                      .|+.++..|+.+|.+|
T Consensus        99 ~l~~~~~~l~~~ireL  114 (189)
T 2v71_A           99 QTRAIKEQLHKYVREL  114 (189)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=86.50  E-value=3.8  Score=29.79  Aligned_cols=45  Identities=2%  Similarity=0.140  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      .+++|..+|..|..+...|..++..|+.+....+.|-.+--++|-
T Consensus         5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD   49 (52)
T 1jcd_A            5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD   49 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            456677777777777777777777666666666666555555543

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=86.49  E-value=0.4  Score=37.49  Aligned_cols=43  Identities=26%  Similarity=0.451  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643          295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN  341 (352)
Q Consensus       295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~  341 (352)
                      +|.+.|+.+|..|.+++.+|+.||..||.    +..++.+..|...+
T Consensus        15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~----~aspEql~q~q~~l   57 (78)
T 1dip_A           15 EEVEILKEQIRELVEKNSQLERENTLLKT----LASPEQLEKFQSRL   57 (78)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSSSCSCCCSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHhcc
Confidence            45567888888888888999999988875    45666666666555

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=86.48  E-value=11  Score=30.23  Aligned_cols=44  Identities=16%  Similarity=0.348  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL  325 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L  325 (352)
                      +.+.++.++..++.++..+-.+|..|++.+..|..+...+.++|
T Consensus        24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L   67 (101)
T 3u1c_A           24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL   67 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444433333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=86.18  E-value=9.2  Score=31.80  Aligned_cols=23  Identities=9%  Similarity=0.211  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 018643          306 RLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       306 ~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .|+.++..|+.++..|+..|.+|
T Consensus        39 ~Lq~El~~lr~~~~~l~~~iReL   61 (111)
T 2v66_B           39 VLEDDLSQTRAIKEQLHKYVREL   61 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=86.17  E-value=6.1  Score=32.07  Aligned_cols=74  Identities=14%  Similarity=0.163  Sum_probs=50.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643          265 KQSNRESARRSRLRKQAECEELQARVETLS---NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS  340 (352)
Q Consensus       265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le---~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~  340 (352)
                      ...|-.+|-..=..|+..+++|...+..++   ..+..|+.++...+..+..=++.-.+|..+...|.  +.++.|...
T Consensus         7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~--~ql~~lq~q   83 (94)
T 3jsv_C            7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ--EQLEQLQRE   83 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH--HHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHH
Confidence            345566777777778899999998888887   56677888888887777666655555555555544  444444443

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=86.06  E-value=4.3  Score=33.31  Aligned_cols=27  Identities=30%  Similarity=0.315  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRL  307 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L  307 (352)
                      ..+.+|+.+|+.|..||..|+.+.+..
T Consensus        65 ~~v~eLe~everL~~ENq~L~~e~~~~   91 (104)
T 3s9g_A           65 ARVRELELELDRLRAENLQLLTENELH   91 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445556666666666555555554433

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=85.99  E-value=3.4  Score=32.04  Aligned_cols=47  Identities=23%  Similarity=0.226  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +.+-+.++..|+....--.+-.++|..++-.|.-||.-|.++|.+|.
T Consensus        27 L~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~   73 (75)
T 3a7o_A           27 LKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK   73 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence            33334555555555555555667788888889999999999988875

>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}

Probab=85.95  E-value=4.2  Score=31.41  Aligned_cols=47  Identities=13%  Similarity=0.196  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +.+.++..+..|+.+...++.++.....+++.|.+=...|-.+|...
T Consensus         6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY   52 (74)
T 2xv5_A            6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY   52 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666777777777777777777777777777777777666554

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=85.80  E-value=4.8  Score=28.94  Aligned_cols=47  Identities=19%  Similarity=0.304  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      ...|+..+..+..+...++.++..++..+..+..+...+++.|..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k   53 (60)
T 3htk_A            7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK   53 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666666666776666666666666666666666653

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=85.73  E-value=1.6  Score=28.34  Aligned_cols=26  Identities=27%  Similarity=0.332  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          297 NRNLRDELQRLSEECEKLTSENNSIK  322 (352)
Q Consensus       297 N~~Lr~el~~L~~e~~~L~~EN~~Lk  322 (352)
                      ...|++++..|+.++..|+-|...|+
T Consensus         4 iaalkqeiaalkkeiaalkfeiaalk   29 (33)
T 4dzn_A            4 IAALKQEIAALKKEIAALKFEIAALK   29 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455444444455555554444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=85.60  E-value=4.9  Score=35.72  Aligned_cols=49  Identities=22%  Similarity=0.338  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      |+||++  .+|...+..++..+..|+..+..|......|..|+..|..+|.
T Consensus        31 rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~   79 (168)
T 3o0z_A           31 RLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE   79 (168)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366665  4555555555555555555555555555555555555544443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=85.23  E-value=6.5  Score=31.50  Aligned_cols=18  Identities=22%  Similarity=0.322  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 018643          279 KQAECEELQARVETLSNE  296 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~E  296 (352)
                      +-.++..|..++..|+.+
T Consensus        42 ~E~ei~sL~kKiq~lE~e   59 (101)
T 3u59_A           42 LEEEQQGLQKKLKGTEDE   59 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=85.21  E-value=1.5  Score=34.02  Aligned_cols=45  Identities=16%  Similarity=0.179  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +|+.-+....+|.......|..|..++..+..++..|+.+|-+++
T Consensus        23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr   67 (72)
T 3nmd_A           23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR   67 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333333444444444555555555666666666666666553

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=85.14  E-value=4.5  Score=34.08  Aligned_cols=44  Identities=16%  Similarity=0.246  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .|+.+...-+....+|+.||..|.++++.+..|..+|+.+...+
T Consensus        61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~  104 (121)
T 3mq7_A           61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL  104 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence            34433333344466677777777777777777777777666654

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=85.10  E-value=2.6  Score=34.70  Aligned_cols=55  Identities=9%  Similarity=0.119  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA  335 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~  335 (352)
                      -+++-|..+++.++....+|+.++....++++.++..+..|+.++..+...-.-+
T Consensus        30 YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR   84 (103)
T 4h22_A           30 YQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR   84 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999999999999999999999999999999999887543333

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=85.05  E-value=1.4  Score=43.52  Aligned_cols=49  Identities=10%  Similarity=0.171  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      -++++++|+++++.|+.++..|.+++...+.....|.++...|+..|+=
T Consensus        15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV   63 (403)
T 4etp_A           15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRV   63 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            3445566777777777777777777777777777777777777665543

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=84.99  E-value=3.9  Score=28.98  Aligned_cols=6  Identities=33%  Similarity=0.268  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 018643          314 LTSENN  319 (352)
Q Consensus       314 L~~EN~  319 (352)
                      |+.|..
T Consensus        36 lrdeia   41 (52)
T 3he5_B           36 LRDEIA   41 (52)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=84.89  E-value=4.1  Score=31.94  Aligned_cols=43  Identities=26%  Similarity=0.389  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          286 LQARVETLSNENRNLRDEL-------QRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       286 Le~kv~~Le~EN~~Lr~el-------~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +-++|+.|-.||.+|.+--       ..|-.+.+.|..|+..|+.+|..+
T Consensus         7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~   56 (77)
T 2w83_C            7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAV   56 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4456666666666655422       223334444555555555555444

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=84.39  E-value=4  Score=31.57  Aligned_cols=45  Identities=24%  Similarity=0.411  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ..|+.+++.-+.+-..++.++..+.+.+..--.|...|+..|.+|
T Consensus        24 ~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL   68 (72)
T 3cve_A           24 SEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            333344443333444444444444444444444445555544443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=84.35  E-value=7.5  Score=37.97  Aligned_cols=25  Identities=16%  Similarity=0.314  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          303 ELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       303 el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      +|++|+.++..|..+...+++++++
T Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~  468 (471)
T 3mq9_A          444 KVEELEGEITTLNHKLQDASAEVER  468 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444443

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=84.32  E-value=6  Score=30.95  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          280 QAECEELQARVETLSNENRNLRDELQ  305 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~  305 (352)
                      |.+++.|+.+++.|+.+...|..++.
T Consensus        21 qrEle~le~~Ie~LE~~i~~le~~la   46 (89)
T 2lw1_A           21 QRELEQLPQLLEDLEAKLEALQTQVA   46 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34578888888888888888877764

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=84.28  E-value=9.5  Score=38.89  Aligned_cols=52  Identities=15%  Similarity=0.289  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          276 RLRKQAECEELQARVETLSNENRN----------LRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       276 R~RKq~~~eeLe~kv~~Le~EN~~----------Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      |+.-+.++++|+.+...+..+...          |..++..|+.++..|+.+...|.++|..
T Consensus        42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~  103 (485)
T 3qne_A           42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS  103 (485)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555443          3334444444444444444444444433

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=84.19  E-value=1.7  Score=39.29  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          292 TLSNENRNLRDELQRLSEECEKLTS  316 (352)
Q Consensus       292 ~Le~EN~~Lr~el~~L~~e~~~L~~  316 (352)
                      .|..||..|..+++....+++.|+.
T Consensus        24 ~L~~En~~L~~ql~~k~~ei~~L~~   48 (190)
T 4emc_A           24 NLVNENFVLSEKLDTKATEIKQLQK   48 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=84.10  E-value=5.6  Score=31.37  Aligned_cols=38  Identities=11%  Similarity=0.187  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       292 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .|...+..|+.+|..|+-.++.+.-++..|+.+-+++.
T Consensus        24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y   61 (83)
T 2xdj_A           24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL   61 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=83.85  E-value=13  Score=31.03  Aligned_cols=45  Identities=13%  Similarity=0.278  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .+.+.++..|......|..+|..|...++.....|..|...-.++
T Consensus        65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkl  109 (129)
T 2fxo_A           65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKL  109 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444444443

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.81  E-value=1.8  Score=43.28  Aligned_cols=47  Identities=17%  Similarity=0.266  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      .+|..+++.|+.+...|..+.+.|+++...|+.|...|+++++.++.
T Consensus        45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~   91 (428)
T 4b4t_K           45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS   91 (428)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            45556666666666666666666666667777777777777777754

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=83.74  E-value=2.1  Score=33.77  Aligned_cols=33  Identities=27%  Similarity=0.278  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEK  313 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~  313 (352)
                      +||..|+.+...|..+...|+.+...|+.+++.
T Consensus        52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~   84 (88)
T 1nkp_A           52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ   84 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555444444444444444444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.74  E-value=9.7  Score=37.34  Aligned_cols=29  Identities=17%  Similarity=0.172  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSE  309 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~  309 (352)
                      ++++....+++.|++||+.|+.++..+..
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (487)
T 3oja_A          435 RDWDMYQHKETQLAEENARLKKLNGEADL  463 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence            33333334444444444444444433333

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=83.71  E-value=12  Score=28.14  Aligned_cols=57  Identities=16%  Similarity=0.181  Sum_probs=35.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          263 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK  322 (352)
Q Consensus       263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk  322 (352)
                      .-..+||+-|-..=..   .+++|...+..-..+....+.+|..|+..++.|+.|...|+
T Consensus        20 ~ia~knr~EaE~~y~~---k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk   76 (77)
T 3trt_A           20 SVAAKNLQEAEEWYKS---KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK   76 (77)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3345666655442222   24566666666666666677777777777777777766664

>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1

Probab=83.60  E-value=3  Score=30.65  Aligned_cols=46  Identities=22%  Similarity=0.373  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +..++..+..|+.+...++.++.....+++.|.+=...|-.+|...
T Consensus         2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatY   47 (59)
T 1gk6_A            2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATY   47 (59)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3466778888888888888888888888888888777777777665

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=83.54  E-value=14  Score=29.50  Aligned_cols=31  Identities=26%  Similarity=0.564  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          295 NENRNLRDELQRLSEECEKLTSENNSIKEDL  325 (352)
Q Consensus       295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L  325 (352)
                      .+...|+.+|..+..+...|..|...|.+.+
T Consensus        56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~   86 (93)
T 3s4r_A           56 EEMRELRRQVDQLTNDKARVEVERDNLAEDI   86 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444344443333333333

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*

Probab=83.45  E-value=1.6  Score=40.77  Aligned_cols=59  Identities=20%  Similarity=0.151  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          259 LKRQKRKQSNRESARRSRLRKQAECEELQA-------RVETLSNENRNLRDELQRLSEECEKLTSE  317 (352)
Q Consensus       259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~-------kv~~Le~EN~~Lr~el~~L~~e~~~L~~E  317 (352)
                      .+|-||.++-=.==-|+|+-|...++++-.       +++.|+.||..|+.+|+.|+++..+.+.+
T Consensus       119 ~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te  184 (250)
T 2ve7_C          119 AKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTV  184 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            357777654433334455555555554444       44444444444444444444444444433

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=83.33  E-value=8.9  Score=33.57  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTS  316 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~  316 (352)
                      -++.|..++..|+-++..|..++..|+.|+..|..
T Consensus        97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~  131 (152)
T 3a7p_A           97 NTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA  131 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666666666666666655553

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=83.28  E-value=4.5  Score=31.79  Aligned_cols=45  Identities=22%  Similarity=0.308  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ..|+.+++.-+.+-..++.++..+.+.+..--.|...|+..|.+|
T Consensus        30 ~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL   74 (79)
T 3cvf_A           30 RAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            333334443333444444444444444444444444555444443

>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=83.08  E-value=0.96  Score=28.46  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 018643          292 TLSNENRNLRDELQRLSEECEKL  314 (352)
Q Consensus       292 ~Le~EN~~Lr~el~~L~~e~~~L  314 (352)
                      .|++.|..|++++..|+-++..|
T Consensus         4 rlkqknarlkqeiaaleyeiaal   26 (28)
T 3ra3_B            4 RLKQKNARLKQEIAALEYEIAAL   26 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHh
Confidence            44555555555555544444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=83.03  E-value=12  Score=34.19  Aligned_cols=18  Identities=11%  Similarity=0.169  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 018643          286 LQARVETLSNENRNLRDE  303 (352)
Q Consensus       286 Le~kv~~Le~EN~~Lr~e  303 (352)
                      |..+++.++.++..|..+
T Consensus        95 L~kEie~~~~~i~~lE~e  112 (256)
T 3na7_A           95 LNIEEDIAKERSNQANRE  112 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=82.94  E-value=5.1  Score=28.47  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +||++|+.|+.-...|+.++.+|-.++..   -...|+.+|..|+
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE   43 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLE   43 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            57888888888888888888777655544   3456777777664

>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A

Probab=82.91  E-value=1.2  Score=32.67  Aligned_cols=29  Identities=14%  Similarity=0.229  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSE  309 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~  309 (352)
                      +.++++...++.|..||..|+.++..|++
T Consensus        27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~   55 (57)
T 2wuj_A           27 EFLAQVRKDYEIVLRKKTELEAKVNELDE   55 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555555555555555555555555443

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=82.71  E-value=6  Score=31.28  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE  317 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E  317 (352)
                      .+=+.....++.++...+..|..|..++..|+++++.|+.+
T Consensus        34 s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~   74 (81)
T 1wt6_A           34 EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            33445556667788888888888888888888888776654

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=82.44  E-value=9.2  Score=30.40  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          295 NENRNLRDELQRLSEECEKLTSENNSI  321 (352)
Q Consensus       295 ~EN~~Lr~el~~L~~e~~~L~~EN~~L  321 (352)
                      .|...-+.+|..|+++++.++.-...|
T Consensus        51 ~el~~h~~ei~~le~~i~rhk~~i~~l   77 (84)
T 1gmj_A           51 NEISHHAKEIERLQKEIERHKQSIKKL   77 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333444444444444443333333

>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*

Probab=82.29  E-value=2.9  Score=40.54  Aligned_cols=48  Identities=15%  Similarity=0.099  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .++..||..|...+.+...|+..+..++.++..|..+...|+.+|...
T Consensus        12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~   59 (323)
T 1lwu_C           12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRP   59 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            355666777777777777777777777777777777777777776544

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=82.26  E-value=15  Score=28.77  Aligned_cols=51  Identities=12%  Similarity=0.148  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      -...++.++..+..|+.+...++.++.....+++.|.+=...|-.+|...+
T Consensus        26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR   76 (86)
T 1x8y_A           26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR   76 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            345677788888888999999999999988899988888888888876653

>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1

Probab=81.88  E-value=5.8  Score=27.69  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          303 ELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       303 el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      ++..|..+++.|+.....|+.+|+.|.
T Consensus        21 elaaleselqalekklaalksklqalk   47 (48)
T 1g6u_A           21 ELAALESELQALEKKLAALKSKLQALK   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456666666666666677777776664

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=81.74  E-value=18  Score=28.87  Aligned_cols=65  Identities=18%  Similarity=0.260  Sum_probs=27.3

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          264 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       264 Rk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ...++|+....-....+.+++.|..+=..+-.+-..++.++..+..+...|.++..--..+|.+|
T Consensus        29 ~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL   93 (96)
T 3q8t_A           29 DVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL   93 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444444333333334444333333333333444444444444444444444444444443

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=81.73  E-value=9.4  Score=31.75  Aligned_cols=48  Identities=19%  Similarity=0.331  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      +++-..|.+++.|+.++.+|+.+++....-...|..+|..|...+...
T Consensus        11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~~   58 (125)
T 1joc_A           11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQA   58 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence            344455566777777777777777777666677777777776555444

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=81.72  E-value=16  Score=28.27  Aligned_cols=53  Identities=17%  Similarity=0.271  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      .|-...+..++..+..|+.+...++.++.....+++.|.+=.-.|-.+|...+
T Consensus        22 ~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR   74 (84)
T 1gk4_A           22 ENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR   74 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            44455677888899999999999999999999999999988888888887653

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=81.45  E-value=10  Score=38.60  Aligned_cols=29  Identities=14%  Similarity=0.230  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          299 NLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      .|+.++..|++++..|+.+..+|.++|..
T Consensus       120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~  148 (501)
T 1wle_A          120 SLRARGREIRKQLTLLYPKEAQLEEQFYL  148 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=81.09  E-value=16  Score=30.33  Aligned_cols=45  Identities=22%  Similarity=0.351  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      .+|+.++..|+.....+...+..|..+...|..+...|+.+|..+
T Consensus        79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444455555555555555555555555544

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=81.02  E-value=19  Score=28.66  Aligned_cols=46  Identities=17%  Similarity=0.249  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      .+.+.|+.++..++.++..+-.+|..|+..+..|..+...+..+|.
T Consensus        23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~   68 (101)
T 3u59_A           23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK   68 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444443333

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=81.02  E-value=6.9  Score=39.31  Aligned_cols=28  Identities=14%  Similarity=0.260  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          300 LRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      |+.++..|++++..|+.+...|.++|..
T Consensus        74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (455)
T 2dq0_A           74 LLAKSREIVKRIGELENEVEELKKKIDY  101 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444433

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=80.67  E-value=19  Score=28.28  Aligned_cols=52  Identities=23%  Similarity=0.393  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643          278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC  329 (352)
Q Consensus       278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~  329 (352)
                      +-.....+|+.+...|..+...|..++..+...|..|......|-.+|..+.
T Consensus        32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~   83 (89)
T 3bas_A           32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK   83 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556788888899999999888899999999999999999999888874

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=80.63  E-value=23  Score=29.49  Aligned_cols=48  Identities=13%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ..+..++..+..|+.+...++.++.....+++.|..=.-.|-.+|...
T Consensus        77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatY  124 (131)
T 3tnu_A           77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY  124 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555667777777777777777777777777777777777776654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=80.59  E-value=14  Score=33.77  Aligned_cols=47  Identities=13%  Similarity=0.106  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR  327 (352)
Q Consensus       281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~  327 (352)
                      +++.+|+.++..|+.+...++.++..++.++..+..+...++.++.+
T Consensus        32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~   78 (256)
T 3na7_A           32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS   78 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444433

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=80.25  E-value=3.9  Score=31.76  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          280 QAECEELQARVETLSNENRNLRDELQRLSEECEKL  314 (352)
Q Consensus       280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L  314 (352)
                      .+||..|+.+...|+.|+..|+.++..|+.++++|
T Consensus        46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l   80 (80)
T 1nlw_A           46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL   80 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            46777888777777777777777777776666543

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=80.05  E-value=3.5  Score=33.77  Aligned_cols=30  Identities=30%  Similarity=0.468  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          282 ECEELQARVETLSNENRNLRDELQRLSEEC  311 (352)
Q Consensus       282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~  311 (352)
                      .+..|..+++.|+.||..|+.+++.|+-++
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L   42 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQL   42 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555554444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	6e-05
d1n69a_	78	a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [Tax	0.002

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 18/85 (21%)

Query: 260 KRQKRKQSN-RESARRSRLRKQAECEELQARVETLSNENR---------------NLRDE 303
              KR+  N  E  RR+ L++      L+ ++  L N  +               +++ E
Sbjct: 3   MNVKRRTHNVLERQRRNELKRS--FFALRDQIPELENNEKAPKVVILKKATAYILSVQAE 60

Query: 304 LQRLSEECEKLTSENNSIKEDLSRL 328
            Q+L  E + L      +K  L +L
Sbjct: 61  EQKLISEEDLLRKRREQLKHKLEQL 85

>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Saposin B
domain: Saposin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 283 CEELQARVETLSNENRNLRDEL-QRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341
           C ++   ++T    N      L + + EEC++L      I ++        A+  +    
Sbjct: 7   CIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMHMQ 66

Query: 342 PTQSC 346
           P + C
Sbjct: 67  PKEIC 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	95.13
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	92.81
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	90.06
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	86.71
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	81.43
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	80.58
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	80.27

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.13  E-value=0.0045  Score=46.38  Aligned_cols=29  Identities=21%  Similarity=0.477  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018643          258 ELKRQKRKQSNRESARRSRLRKQAECEEL  286 (352)
Q Consensus       258 e~KR~RRk~~NRESARrSR~RKq~~~eeL  286 (352)
                      -++-.||+=+||.+|++||+||....++|
T Consensus        46 lirDIRRRGKNKvAAqnCRKRKld~~d~l   74 (74)
T d1sknp_          46 LIRKIRRRGKNKVAARTCRQRRTDRHDKM   74 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence            35667889999999999999999876543

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.81  Score=33.83  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      .+..|+.++..|..+.+.|+.++..|..+|..|.|
T Consensus        53 yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~g   87 (88)
T d1nkpa_          53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG   87 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45557778888888888888888888888888764

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=1.5  Score=31.93  Aligned_cols=34  Identities=15%  Similarity=0.312  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643          297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG  330 (352)
Q Consensus       297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g  330 (352)
                      ...|+.++..|..+.+.|+.+|..|..+|..|.|
T Consensus        49 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~g   82 (83)
T d1nkpb_          49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3446677777778888888888888888887754

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.71  E-value=0.61  Score=34.55  Aligned_cols=32  Identities=19%  Similarity=0.275  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          290 VETLSNENRNLRDELQRLSEECEKLTSENNSI  321 (352)
Q Consensus       290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L  321 (352)
                      |..|+.++..|..++..|+.+...|..+...|
T Consensus        54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L   85 (88)
T d1nkpa_          54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL   85 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444444444444444444444444433

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.43  E-value=7.1  Score=27.76  Aligned_cols=30  Identities=20%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643          297 NRNLRDELQRLSEECEKLTSENNSIKEDLS  326 (352)
Q Consensus       297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~  326 (352)
                      +..|+.++..|..+++.|..++..|+.+|.
T Consensus        49 I~~L~~~~~~l~~~~~~L~~~~~~L~~~l~   78 (79)
T d1nlwa_          49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344666666677777777777777777764

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=80.58  E-value=4.4  Score=30.63  Aligned_cols=31  Identities=23%  Similarity=0.242  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643          298 RNLRDELQRLSEECEKLTSENNSIKEDLSRL  328 (352)
Q Consensus       298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l  328 (352)
                      ..|..++..|+.++..|..+...+.++|..+
T Consensus        67 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~   97 (110)
T d1seta1          67 EALIARGKALGEEAKRLEEALREKEARLEAL   97 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555544

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=80.27  E-value=4.9  Score=30.30  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643          305 QRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT  343 (352)
Q Consensus       305 ~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~  343 (352)
                      ..|..+...|..+...|.+++..+.  +.+.++.-.+|.
T Consensus        67 ~~l~~~~k~lk~~i~~le~~~~~~~--~~l~~~ll~iPN  103 (110)
T d1seta1          67 EALIARGKALGEEAKRLEEALREKE--ARLEALLLQVPL  103 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCCC
Confidence            3444445555555555555555554  444444444443