Citrus Sinensis ID: 018658

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
MSASGHRSSMSTSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQDAHVGTEKQNFWETSGFKIVVSMSMLILVVFSKR
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcc
cccccEEcEcccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEHHHHHHHHHccc
msasghrssmstssssssssvpareidPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDeknsslkeHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKqqdahvgtekqnfwetsGFKIVVSMSMLILVVFSKR
msasghrssmstssssssssvparEIDPLLKDLNEKKQSFRKNVVSLAAELKEVrtrlasqeqcfvkETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAkagvnkdcELRKLldevspknferinkllvvkdeeihKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAkqqdahvgtekqnfwetsgfkiVVSMSMLILVVFSKR
MsasghrssmstssssssssVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRsqlaatkatadasaasaqsaqlqclalVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQDAHVGTEKQNFWETSGFKIVVSMSMLILVVFSKR
**********************************************L****************CFV*************************************ACTAEKYLMQLDG*************************CLAL*********************************************VFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLK*********************VLKLEFCLQ***************************************KQNFWETSGFKIVVSMSMLILVVF***
************************************************************************************************************************************************************************************************************************************************************************************************************************************************IVVSMSMLILVVFSKR
***********************REIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL****************AQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDL*********LKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRD*************EKQNFWETSGFKIVVSMSMLILVVFSKR
**********************AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQ************W*TSGFKIVVSMSMLILVVFSKR
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SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
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MSASGHRSSMSTSSSSSSSSVPAREIDPLxxxxxxxxxxxxxxxxxxxxxLKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKxxxxxxxxxxxxxxxxxxxxxVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQDAHVGTEKQNFWETSGFKIVVSMSMLILVVFSKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
359487694355 PREDICTED: uncharacterized protein LOC10 0.937 0.929 0.845 1e-146
224124546344 predicted protein [Populus trichocarpa] 0.974 0.997 0.834 1e-145
224122832344 predicted protein [Populus trichocarpa] 0.974 0.997 0.808 1e-144
255543022340 conserved hypothetical protein [Ricinus 0.917 0.95 0.843 1e-142
296089842349 unnamed protein product [Vitis vinifera] 0.911 0.919 0.844 1e-141
356575301345 PREDICTED: uncharacterized protein LOC10 0.974 0.994 0.8 1e-140
356534981346 PREDICTED: uncharacterized protein LOC10 0.965 0.982 0.804 1e-140
147780245444 hypothetical protein VITISV_037754 [Viti 0.880 0.698 0.796 1e-134
449453990347 PREDICTED: uncharacterized protein LOC10 0.937 0.951 0.786 1e-133
18421042335 uncharacterized protein [Arabidopsis tha 0.928 0.976 0.730 1e-131
>gi|359487694|ref|XP_002276639.2| PREDICTED: uncharacterized protein LOC100259639 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 279/330 (84%), Positives = 301/330 (91%)

Query: 23  AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM 82
            R+IDPLLKDLNEKKQSFRKNVVSLAAELKEVR RLASQEQ F KETL R+ AE KAK+M
Sbjct: 26  VRDIDPLLKDLNEKKQSFRKNVVSLAAELKEVRGRLASQEQSFAKETLNRKVAETKAKSM 85

Query: 83  EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
           E+EI +LQK+LEERNG+LQASA T EKYL +LDGLRSQL+ T+ATADASAASAQSAQLQC
Sbjct: 86  EEEIGRLQKSLEERNGQLQASAMTTEKYLQELDGLRSQLSFTQATADASAASAQSAQLQC 145

Query: 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
           LAL+KELDEKN SLKEH DRV RLG+QLDNLQKDLQARE SQKQLKDEV RIE DIMQ +
Sbjct: 146 LALIKELDEKNISLKEHGDRVNRLGEQLDNLQKDLQAREYSQKQLKDEVLRIEHDIMQAV 205

Query: 203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES 262
           AKAG N+DCELRK+LDEVSPKNFE+INKLL+ KD+EI KLKDEI+IMSAHWKLKTKE+ES
Sbjct: 206 AKAGANRDCELRKILDEVSPKNFEKINKLLIAKDDEIAKLKDEIRIMSAHWKLKTKEMES 265

Query: 263 QLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQDAHV 322
           QLEK RRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKA+KELRDQLA KQQ    
Sbjct: 266 QLEKHRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKALKELRDQLATKQQVEAA 325

Query: 323 GTEKQNFWETSGFKIVVSMSMLILVVFSKR 352
           G EKQNFWE+SGFKIVVSMSMLILVVFSKR
Sbjct: 326 GIEKQNFWESSGFKIVVSMSMLILVVFSKR 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224124546|ref|XP_002330050.1| predicted protein [Populus trichocarpa] gi|222871475|gb|EEF08606.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122832|ref|XP_002318927.1| predicted protein [Populus trichocarpa] gi|222857303|gb|EEE94850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255543022|ref|XP_002512574.1| conserved hypothetical protein [Ricinus communis] gi|223548535|gb|EEF50026.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|296089842|emb|CBI39661.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575301|ref|XP_003555780.1| PREDICTED: uncharacterized protein LOC100798343 [Glycine max] Back     alignment and taxonomy information
>gi|356534981|ref|XP_003536028.1| PREDICTED: uncharacterized protein LOC100777398 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|147780245|emb|CAN65738.1| hypothetical protein VITISV_037754 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453990|ref|XP_004144739.1| PREDICTED: uncharacterized protein LOC101221548 [Cucumis sativus] gi|449490792|ref|XP_004158708.1| PREDICTED: uncharacterized LOC101221548 [Cucumis sativus] Back     alignment and taxonomy information
>gi|18421042|ref|NP_568487.1| uncharacterized protein [Arabidopsis thaliana] gi|42573487|ref|NP_974840.1| uncharacterized protein [Arabidopsis thaliana] gi|332006216|gb|AED93599.1| uncharacterized protein [Arabidopsis thaliana] gi|332006217|gb|AED93600.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
TAIR|locus:2148448335 AT5G26770 "AT5G26770" [Arabido 0.928 0.976 0.669 4.2e-111
TAIR|locus:2012370336 AT1G09470 "AT1G09470" [Arabido 0.943 0.988 0.560 2.1e-93
TAIR|locus:504956315112 AT1G09483 "AT1G09483" [Arabido 0.267 0.839 0.628 3.6e-25
UNIPROTKB|F1P4A8 1431 GOLGA3 "Uncharacterized protei 0.846 0.208 0.220 3.3e-09
UNIPROTKB|E1BXY6 1519 GOLGA3 "Uncharacterized protei 0.846 0.196 0.220 3.5e-09
MGI|MGI:1915428 1298 Cgnl1 "cingulin-like 1" [Mus m 0.846 0.229 0.212 6.4e-09
RGD|1304623 1292 Cgnl1 "cingulin-like 1" [Rattu 0.846 0.230 0.215 1.1e-08
DICTYBASE|DDB_G0271058 1528 vilC "villin-like protein C" [ 0.815 0.187 0.235 1.3e-08
RGD|67404 1320 Clip1 "CAP-GLY domain containi 0.818 0.218 0.214 1.4e-08
UNIPROTKB|F1MAH8 1320 Clip1 "Protein Clip1" [Rattus 0.818 0.218 0.214 1.4e-08
TAIR|locus:2148448 AT5G26770 "AT5G26770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 219/327 (66%), Positives = 257/327 (78%)

Query:    26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDE 85
             +DPLLKDL+ KK+SFR+NVVS+AAELK+VR RL SQEQ FVKE+  R+EAE KAKNME E
Sbjct:     9 VDPLLKDLDGKKESFRRNVVSMAAELKQVRGRLVSQEQFFVKESFCRKEAEKKAKNMEME 68

Query:    86 ICKLQKTLEERNGRLQASACTAEKYLMQLDGLRXXXXXXXXXXXXXXXXXXXXXXXXXXX 145
             ICKLQK LE+RN  L AS   AEK+L ++D LR                           
Sbjct:    69 ICKLQKKLEDRNCELVASTSAAEKFLEEVDDLRSQLALTKDIAETSAASAQSAQLQCSVL 128

Query:   146 VKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA 205
              ++LD+K  SL+EHEDRVT LG QLDNLQ+DL+ RE SQKQL++EV RIE++I + +AK+
Sbjct:   129 TEQLDDKTRSLREHEDRVTHLGHQLDNLQRDLKTRECSQKQLREEVMRIEREITEAVAKS 188

Query:   206 GVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLE 265
             G   +CELRKLL+EVSPKNFER+N LL VKDEEI KLKD++K+MSAHWKLKTKELESQLE
Sbjct:   189 GKGTECELRKLLEEVSPKNFERMNMLLAVKDEEIAKLKDDVKLMSAHWKLKTKELESQLE 248

Query:   266 KQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQDAHVGTE 325
             +QRRADQELKK+VLKLEFCLQEAR+QTRKLQR GERRDKAIKEL DQ+  KQ +  V  E
Sbjct:   249 RQRRADQELKKKVLKLEFCLQEARSQTRKLQRAGERRDKAIKELSDQITGKQLNESVSGE 308

Query:   326 KQNFWETSGFKIVVSMSMLILVVFSKR 352
             KQNFW+TSGFKIVVSMSMLILV+ SKR
Sbjct:   309 KQNFWDTSGFKIVVSMSMLILVIISKR 335
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2012370 AT1G09470 "AT1G09470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956315 AT1G09483 "AT1G09483" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4A8 GOLGA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXY6 GOLGA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1915428 Cgnl1 "cingulin-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1304623 Cgnl1 "cingulin-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271058 vilC "villin-like protein C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|67404 Clip1 "CAP-GLY domain containing linker protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MAH8 Clip1 "Protein Clip1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00022525001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (355 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 0.002
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 0.002
COG4942 420 COG4942, COG4942, Membrane-bound metallopeptidase 0.003
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information 
 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 60/296 (20%), Positives = 127/296 (42%), Gaps = 19/296 (6%)

Query: 30  LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKA-------KNM 82
           L++L E+ +  ++ +     EL+E+   L   E+   +  L   E E +          +
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293

Query: 83  EDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQC 142
            +EI +L++  +    RL       E+   QL+ L S+L              +  + + 
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202
            +L  EL+E  + L+E E R+  L +QL+ L+  +   E     L +E+ R+E  + + +
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER-L 412

Query: 203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES 262
                    E+ +LL ++     + +   L   +EE+ +L++E+           + LE 
Sbjct: 413 EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL-----------ERLEE 461

Query: 263 QLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQ 318
            LE+ R   +E ++ +   E  L + +A+   L+R+ E  +   + ++  L  +  
Sbjct: 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 352
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.0
PRK02224 880 chromosome segregation protein; Provisional 97.99
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.9
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.56
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 97.33
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.93
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.79
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.54
PF00038312 Filament: Intermediate filament protein; InterPro: 96.5
PF00038312 Filament: Intermediate filament protein; InterPro: 96.2
PRK02224 880 chromosome segregation protein; Provisional 95.91
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 95.84
PRK11637 428 AmiB activator; Provisional 95.49
PF09738302 DUF2051: Double stranded RNA binding protein (DUF2 95.47
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 95.41
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.73
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 94.62
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 93.63
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 93.21
PRK04778569 septation ring formation regulator EzrA; Provision 92.97
PRK09039343 hypothetical protein; Validated 92.69
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 92.58
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 92.44
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 92.09
PF05335188 DUF745: Protein of unknown function (DUF745); Inte 91.28
PRK04778569 septation ring formation regulator EzrA; Provision 90.86
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 90.43
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 90.05
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 89.69
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 89.61
COG0419 908 SbcC ATPase involved in DNA repair [DNA replicatio 89.52
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 89.26
PF03915424 AIP3: Actin interacting protein 3; InterPro: IPR02 88.72
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 88.56
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 88.01
PF15294278 Leu_zip: Leucine zipper 88.0
KOG0971 1243 consensus Microtubule-associated protein dynactin 87.86
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 87.67
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 86.36
PF05701522 WEMBL: Weak chloroplast movement under blue light; 86.32
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 86.05
COG4942420 Membrane-bound metallopeptidase [Cell division and 84.69
PRK11637428 AmiB activator; Provisional 84.34
PHA02562 562 46 endonuclease subunit; Provisional 83.53
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 82.96
PHA02562562 46 endonuclease subunit; Provisional 82.82
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 81.66
PRK10246 1047 exonuclease subunit SbcC; Provisional 80.12
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 80.09
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information 
Probab=98.00  E-value=0.0068  Score=69.58  Aligned_cols=219  Identities=26%  Similarity=0.370  Sum_probs=143.0

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhh
Q 018658           43 NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLA  122 (352)
Q Consensus        43 NVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs  122 (352)
                      .|.-+-..+++...+++.-+..+..|=-+|..+|..-+.++.|+..|++.|++..+...+-..-.-+.-.|+-.||..|.
T Consensus      1091 ~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~le 1170 (1930)
T KOG0161|consen 1091 EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLE 1170 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555566666667777788888889999999999999999999999988888888888888889999998887


Q ss_pred             HhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHH
Q 018658          123 ATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI  202 (352)
Q Consensus       123 ~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~  202 (352)
                      -..-+-++..+...                    +.|.+.|..+++|+++++++.+-.+--...|.-|+..++..+=. .
T Consensus      1171 ee~~~~e~~~~~lr--------------------~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~-~ 1229 (1930)
T KOG0161|consen 1171 EETLDHEAQIEELR--------------------KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQ-L 1229 (1930)
T ss_pred             HHHHhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            65544443332222                    88999999999999999999988887777777777777666531 1


Q ss_pred             HHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHH
Q 018658          203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLE  282 (352)
Q Consensus       203 akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLE  282 (352)
                      .++  +.+.|-.-       +-+|.-+.-|..|++++.++..++..-..-=.+...+|.+|++.--..-..+=+..-.++
T Consensus      1230 ~~~--k~~~e~~~-------k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~ 1300 (1930)
T KOG0161|consen 1230 SSE--KKDLEKKD-------KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALE 1300 (1930)
T ss_pred             hhh--hccHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence            122  12222221       444455556677777777777665544444444444555555443333333333333333


Q ss_pred             HHHHHHHHH
Q 018658          283 FCLQEARAQ  291 (352)
Q Consensus       283 fcLqEaRsQ  291 (352)
                      -=|++.+.|
T Consensus      1301 ~qle~~k~q 1309 (1930)
T KOG0161|consen 1301 SQLEELKRQ 1309 (1930)
T ss_pred             HHHHHHHHH
Confidence            344444433

>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6 Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PF15294 Leu_zip: Leucine zipper Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PRK10246 exonuclease subunit SbcC; Provisional Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-08
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 51/294 (17%), Positives = 111/294 (37%), Gaps = 13/294 (4%)

Query: 30   LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKL 89
            LK+L +K     +    L  +L+      A  E+  V+    +QE E     ME  I   
Sbjct: 880  LKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI--- 936

Query: 90   QKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKEL 149
             +  EER+ +LQA     ++   Q+  L  QL   +A          +A  +   +  ++
Sbjct: 937  -EEEEERSQQLQAEKKKMQQ---QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI 992

Query: 150  DEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNK 209
                    +       L +++ +L  +L   E   K L     + E  I +   +    +
Sbjct: 993  LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052

Query: 210  DC--ELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIM---SAHWKLKTKELESQL 264
                EL K+  ++  ++   +++ +     +I +LK ++            + ++  SQ 
Sbjct: 1053 KSRQELEKIKRKLEGES-SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111

Query: 265  EKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQ 318
                +  +EL+  +  L+  L+  +A   K ++      + ++ L+ +L     
Sbjct: 1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.42
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.23
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.74
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 91.0
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 90.39
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 89.74
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 88.49
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 86.67
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 85.62
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 82.63
1t6f_A37 Geminin; coiled-coil, cell cycle; 1.47A {Synthetic 80.32
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=97.42  E-value=0.03  Score=44.42  Aligned_cols=27  Identities=11%  Similarity=0.079  Sum_probs=11.0

Q ss_pred             HHHhHHHHhHHHHHHHHHHHHHhhhhh
Q 018658           35 EKKQSFRKNVVSLAAELKEVRTRLASQ   61 (352)
Q Consensus        35 EKK~sfRrNVvslAaELK~~R~rLasQ   61 (352)
                      .|=.+++..+..+-.++.++...++.-
T Consensus         6 ~~~~~l~~~~~~~~~~~~~l~~~l~~l   32 (284)
T 1c1g_A            6 KKMQMLKLDKENALDRADEAEADKKAA   32 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444333
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00