Citrus Sinensis ID: 018662

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MDMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDYGT
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHccccccEEEcccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccHHHHHHHHcccccccEEEccccccccccccccccHHHcHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEEEEcccccccccccHcccccccEEEccccccccccHHHHccccccEEEccccccccccccccHHHHccccccEEEcccccccccccHHHcccccEEEccccccccccHHHHHHHcccEEEcccccccccHHHcccccccEEEEEEEEEcccHHHcccccccEEEEEEcccccHHHcccccccEEEcccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEccccccccccHHHHHHHcccccccEEEEcccccEEEEcEccccccccccHHHccccccccccHHHHHHHHcccc
Coil and Loop (DISEMBL)
mdmdgekqpsaeatnpdqaveIDLSntvldltsfqlhdldsvefptnlteldltANRLTSLDSRISHLSNLKKLSLRQNLiddaaiepiSRWDALAGLEELILRdnklmkipdvsifkkLSVFDVSfneitsshglsnVTDTLKELYVsknevpkmeeiehfhdlqileFGSNRLRVMENLQNLTNLqelwlgrnrikVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLshngiskmEGLSTLVNLHvldvssnkltlvdDIQNLSrledlwlndnqIESLESIVEAVAGSRETLTTIYlennpqnlqiillpsdkfSQIYSRLILMYFFRShsvlgfsfcqdygt
Flexible Loop (DISEMBL)
mdmdgekqpsaeatnpdqaVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNeitsshglsnvtdTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTnlqelwlgrNRIKVVNLCGLKCIkkislqsnrltsMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDYGT
Low Complexity Region (SEG)
MDMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMenlqnltnlqelwlGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDYGT
Disordered region (IsUnstruct)
********************EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQD***
Disordered Region (DISOPRED)
******************AVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDYGT
Disordered Region (DISEMBL)
**************NPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDYGT
Disordered Region (DISPRO)
*******QPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDYG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDYGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
Q54Q39	336	Protein phosphatase 1 reg	yes	no	0.775	0.812	0.432	3e-48
Q5HZV9	360	Protein phosphatase 1 reg	yes	no	0.75	0.733	0.394	8e-45
Q15435	360	Protein phosphatase 1 reg	yes	no	0.75	0.733	0.386	9e-45
Q5RFS7	360	Protein phosphatase 1 reg	yes	no	0.75	0.733	0.386	1e-44
Q3UM45	361	Protein phosphatase 1 reg	yes	no	0.75	0.731	0.390	1e-44
Q3T0W4	360	Protein phosphatase 1 reg	yes	no	0.75	0.733	0.379	9e-44
Q6DIQ3	346	Protein phosphatase 1 reg	yes	no	0.667	0.679	0.405	7e-38
Q32PL1	345	Protein phosphatase 1 reg	yes	no	0.75	0.765	0.375	1e-37
P36047	338	Protein phosphatase 1 reg	yes	no	0.755	0.786	0.397	1e-32
P22194	332	Protein phosphatase 1 reg	yes	no	0.710	0.753	0.344	3e-32

>sp|Q54Q39|PP1R7_DICDI Protein phosphatase 1 regulatory subunit pprA OS=Dictyostelium discoideum GN=pprA PE=3 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/291 (43%), Positives = 181/291 (62%), Gaps = 18/291 (6%)

Query: 27  TVLDLTSFQLHDL--DSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDA 84
           T LDLT  Q H    DS   P  L +LDLT  ++T +++ I+HL NLKKL  RQNLI   
Sbjct: 28  TYLDLTG-QPHTSIGDSYNIPETLLDLDLTNCKITKIEN-INHLKNLKKLCFRQNLI--- 82

Query: 85  AIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD--T 142
             E I   D L  LE L L DNKL  I ++  F+ L+  D+SFNEI     LS + D   
Sbjct: 83  --EKIENIDQLKELESLDLYDNKLQVIENIKDFQSLTYLDLSFNEIRIVENLS-IKDIPK 139

Query: 143 LKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVN 201
           +KELY++ N++ K+E ++    ++ LE GSNRLR +ENL+NL N++ LWLGRN+I ++  
Sbjct: 140 IKELYLANNKITKIENLQELVPIKNLELGSNRLREIENLENLVNIETLWLGRNKITEIKG 199

Query: 202 LCGLKCIKKISLQSNRLT--SMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSS 259
           +  L  ++ +SLQSNRLT   +KG      LEELYLSHNGI+ ++GL +L  L  LD+S+
Sbjct: 200 INHLSHLRILSLQSNRLTEIGVKGLVGLNCLEELYLSHNGITDIDGLQSLKQLRTLDISA 259

Query: 260 NKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           NK+  +  +  L  L+++W NDN ++S+++I + V  S   +  +Y E NP
Sbjct: 260 NKIKTLVGLNELPDLDEIWCNDNLVDSMDNIEQQVTKS---IKCLYFERNP 307

Regulatory subunit of protein phosphatase 1.
Dictyostelium discoideum (taxid: 44689)

>sp|Q5HZV9|PP1R7_RAT Protein phosphatase 1 regulatory subunit 7 OS=Rattus norvegicus GN=Ppp1r7 PE=1 SV=1

 Score =  181 bits (459), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 108/274 (39%), Positives = 173/274 (63%), Gaps = 10/274 (3%)

Query: 38  DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           D++++    +  ++DL   R+  ++     L  +K L LRQNLI     + I   D L  
Sbjct: 68  DMETISLDRDAEDVDLNHYRIGKIEG-FEVLKKVKSLCLRQNLI-----KCIENLDELQS 121

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           L EL L DN++ KI ++    +L V D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct: 122 LRELDLYDNQIKKIENLEALTELEVLDISFNLLRNIEGIDKLT-QLKKLFLVNNKINKIE 180

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            I     LQ+LE GSNR+R +EN+  LTNL+ L+LG+N+I K+ NL  L  +  +S+QSN
Sbjct: 181 NISTLQQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALSNLTVLSMQSN 240

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
           RLT ++G +  + L ELYLSHNGI  +EGL     L +LD++SN++  +++I +L+ L++
Sbjct: 241 RLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQE 300

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
            W+NDN +ES  S ++ + G+R +L T+YLE NP
Sbjct: 301 FWMNDNLLESW-SDLDELKGAR-SLETVYLERNP 332

Regulatory subunit of protein phosphatase 1.

Rattus norvegicus (taxid: 10116)

>sp|Q15435|PP1R7_HUMAN Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7 PE=1 SV=1

 Score =  181 bits (458), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 106/274 (38%), Positives = 175/274 (63%), Gaps = 10/274 (3%)

Query: 38  DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           D++++    +  ++DL   R+  ++     L  +K L LRQNLI     + I   + L  
Sbjct: 68  DMETINLDRDAEDVDLNHYRIGKIEG-FEVLKKVKTLCLRQNLI-----KCIENLEELQS 121

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           L EL L DN++ KI ++    +L + D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct: 122 LRELDLYDNQIKKIENLEALTELEILDISFNLLRNIEGVDKLT-RLKKLFLVNNKISKIE 180

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            + + H LQ+LE GSNR+R +EN+  LTNL+ L+LG+N+I K+ NL  L  +  +S+QSN
Sbjct: 181 NLSNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQSN 240

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
           RLT ++G +  + L ELYLSHNGI  +EGL     L +LD++SN++  +++I +L+ L++
Sbjct: 241 RLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQE 300

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
            W+NDN +ES  S ++ + G+R +L T+YLE NP
Sbjct: 301 FWMNDNLLESW-SDLDELKGAR-SLETVYLERNP 332

Regulatory subunit of protein phosphatase 1.

Homo sapiens (taxid: 9606)

>sp|Q5RFS7|PP1R7_PONAB Protein phosphatase 1 regulatory subunit 7 OS=Pongo abelii GN=PPP1R7 PE=2 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/274 (38%), Positives = 175/274 (63%), Gaps = 10/274 (3%)

Query: 38  DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           D++++    +  ++DL   R+  ++     L  +K L LRQNLI     + I   + L  
Sbjct: 68  DMETINLDRDAEDVDLNHYRIGKIEG-FEVLKKVKTLCLRQNLI-----KCIENLEELQS 121

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           L EL L DN++ KI ++    +L + D+SFN + +  G+  VT  LK+L++  N++ K+E
Sbjct: 122 LRELDLYDNQIKKIENLEALTELEILDISFNLLRNIEGVDKVT-QLKKLFLVNNKISKIE 180

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            + + H LQ+LE GSNR+R +EN+  LTNL+ L+LG+N+I K+ NL  L  +  +S+QSN
Sbjct: 181 NLSNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQSN 240

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
           RLT ++G +  + L+ELYLSHNGI  +EGL     L +LD++SN++  +++I +L+  ++
Sbjct: 241 RLTKIEGLQNLVNLQELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTEPQE 300

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
            W+NDN +ES  S ++ + G+R +L T+YLE NP
Sbjct: 301 FWMNDNLLESW-SDLDELKGAR-SLETVYLERNP 332

Regulatory subunit of protein phosphatase 1.

Pongo abelii (taxid: 9601)

>sp|Q3UM45|PP1R7_MOUSE Protein phosphatase 1 regulatory subunit 7 OS=Mus musculus GN=Ppp1r7 PE=1 SV=2

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/274 (39%), Positives = 176/274 (64%), Gaps = 10/274 (3%)

Query: 38  DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           D++++    +  ++DLT  R+  ++  +  L  +K L LRQNLI     + I   + L  
Sbjct: 69  DMETINLDRDAEDVDLTHYRIGKIEG-LEVLKKVKSLCLRQNLI-----KCIENLEELQS 122

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           L EL L DN++ KI ++    +L V D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct: 123 LRELDLYDNQIKKIENLEALTELEVLDISFNMLRNIEGIDKLT-QLKKLFLVNNKINKIE 181

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            I + H LQ+LE GSNR+R +EN+  LTNL+ L+LG+N+I K+ NL  L  +  +S+QSN
Sbjct: 182 NISNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSVQSN 241

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
           RL  ++G +  + L ELYLS+NGI  +EGL     L +LD++SN++  +++I +L+ L++
Sbjct: 242 RLAKIEGLQSLVNLRELYLSNNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQE 301

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
            W+NDN +ES  S ++ + G+R +L T+YLE NP
Sbjct: 302 FWMNDNLLESW-SDLDELKGAR-SLETVYLERNP 333

Regulatory subunit of protein phosphatase 1.

Mus musculus (taxid: 10090)

>sp|Q3T0W4|PP1R7_BOVIN Protein phosphatase 1 regulatory subunit 7 OS=Bos taurus GN=PPP1R7 PE=1 SV=1

 Score =  177 bits (450), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 173/274 (63%), Gaps = 10/274 (3%)

Query: 38  DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           D++++    +  ++DL   R+  ++     L  +K L LRQNLI     + I   + L  
Sbjct: 68  DMETISLDRDAEDVDLNHYRIGKIEG-FEVLKKVKTLCLRQNLI-----KCIENLEGLQS 121

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           L EL L DN++ +I ++    +L V D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct: 122 LRELDLYDNQIRRIENLDALTELEVLDISFNLLRNIEGIDKLT-RLKKLFLVNNKINKIE 180

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            I   H LQ+LE GSNR+R +EN+  LTNL+ L+LG+N+I K+ NL  L  +  +S+QSN
Sbjct: 181 NISSLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQSN 240

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
           RLT ++G +  + L ELYLSHNGI  +EGL     L +LD++SN++  ++++ +L+ L++
Sbjct: 241 RLTKIEGLQSLVNLRELYLSHNGIEVIEGLDNNNKLTMLDIASNRIKKIENVSHLTELQE 300

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
            W+NDN ++   S ++ + G+R +L T+YLE NP
Sbjct: 301 FWMNDNLLDCW-SDLDELKGAR-SLETVYLERNP 332

Regulatory subunit of protein phosphatase 1. Inactivates the PPP1CC isoform 2 during epididymal sperm maturation.

Bos taurus (taxid: 9913)

>sp|Q6DIQ3|PP1R7_XENTR Protein phosphatase 1 regulatory subunit 7 OS=Xenopus tropicalis GN=ppp1r7 PE=2 SV=1

 Score =  158 bits (399), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 154/244 (63%), Gaps = 9/244 (3%)

Query: 68  LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF 127
           L  +K L LRQNLI     + I   + L  L EL L DN++ KI ++   + L + D+SF
Sbjct: 83  LKKVKTLCLRQNLI-----KLIENLEQLVTLTELDLYDNQIRKIGNLETLRDLQILDLSF 137

Query: 128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
           N +    GL +++  L+ LY+  N++ ++E       L++LE GSNRLRV+ENL +L  L
Sbjct: 138 NLLRRIEGLESLSH-LQRLYLVNNKISRIENFGTLTQLRLLELGSNRLRVIENLDSLREL 196

Query: 188 QELWLGRNRI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL 246
             L+LG+N+I K+ NL  L  +  +S+QSNRLT ++G +  + L ELYLS NGI  +EGL
Sbjct: 197 DSLFLGKNKITKLQNLETLTNLTVLSVQSNRLTKIEGLQNLVNLRELYLSDNGIQVIEGL 256

Query: 247 STLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYL 306
                L  LD++SN++  +++I++LS L++ W+NDN +E+  S +E ++G+   L T+YL
Sbjct: 257 ENNNKLTTLDLASNRIKRIENIKHLSELQEFWMNDNLVENW-SDLEELSGA-PGLQTVYL 314

Query: 307 ENNP 310
           E NP
Sbjct: 315 ERNP 318

Regulatory subunit of protein phosphatase 1.

Xenopus tropicalis (taxid: 8364)

>sp|Q32PL1|PP1R7_DANRE Protein phosphatase 1 regulatory subunit 7 OS=Danio rerio GN=ppp1r7 PE=2 SV=1

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/274 (37%), Positives = 171/274 (62%), Gaps = 10/274 (3%)

Query: 38  DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           D+D++       ++DL   R+  ++  +  L   K +SLRQNLI     + I   ++L  
Sbjct: 53  DMDTITLDPEEEDVDLVHCRIGKIEG-LEVLLKAKTISLRQNLI-----KRIENLESLVS 106

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           L EL L DN++ K+ ++    +L   DVSFN +    GL ++T  +K+L++  N++  + 
Sbjct: 107 LRELDLYDNQIRKLENLQALTELEQLDVSFNLLRKIEGLDSLT-KVKKLFLLHNKIASIA 165

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            ++H   LQ+LE GSNR+RV+ENL +L++L+ L+LG N+I ++ NL GL  +  +S+QSN
Sbjct: 166 NLDHLTSLQMLELGSNRIRVIENLDSLSSLESLFLGTNKITQLQNLDGLHNLTVLSIQSN 225

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
           R+T ++G +  + L ELYLSHNGI  MEGL     L  LD+++N++  +++I +L+ L++
Sbjct: 226 RITKLEGLQNLVNLRELYLSHNGIEVMEGLENNKKLSTLDIAANRIKKIENISHLTDLKE 285

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
            W+NDNQIE+   + E    + + L T+YLE NP
Sbjct: 286 FWMNDNQIENWADLDE--LKNAKGLETVYLERNP 317

Regulatory subunit of protein phosphatase 1.

Danio rerio (taxid: 7955)

>sp|P36047|SDS22_YEAST Protein phosphatase 1 regulatory subunit SDS22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDS22 PE=1 SV=1

 Score =  140 bits (354), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/279 (39%), Positives = 173/279 (62%), Gaps = 13/279 (4%)

Query: 43  EFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101
           + P ++  +DL   ++ SL D  +    NLK+L LRQNLI+  +   +   D +  L+  
Sbjct: 39  DLPDDVEVIDLVHLKIKSLEDLNLYRFKNLKQLCLRQNLIESISEVEVLPHDKIVDLD-- 96

Query: 102 ILRDNKLMKIP-DVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIE 160
              DNK+  I  +V+   KL+  D+SFN+I     L N+TD L+ LY  +N + K+E + 
Sbjct: 97  -FYDNKIKHISSNVNKLTKLTSLDLSFNKIKHIKNLENLTD-LENLYFVQNSISKIENLS 154

Query: 161 HFHDLQILEFGSNRLRVME--NLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSNR 217
               L+ LE G N++  +E  + + L+NL+E+WLG+N I +++NL  LK +K +S+QSN+
Sbjct: 155 TLKSLKNLELGGNKVHSIEPDSFEGLSNLEEIWLGKNSIPRLINLHPLKNLKILSIQSNK 214

Query: 218 LTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDL 277
           L  ++  EE   LEELYLSHN I+K+EGL   + L  LDV+SNK+T ++++ +LS L D+
Sbjct: 215 LKKIENLEELTNLEELYLSHNFITKIEGLEKNLKLTTLDVTSNKITSLENLNHLSNLTDI 274

Query: 278 WLNDNQI-ESLESIVEAVAG-SRETLTTIYLENNPQNLQ 314
           W + N+I +S ES+ E ++  SR  L TIYLE NP  L+
Sbjct: 275 WASFNKIDQSFESLGENLSALSR--LETIYLEGNPIQLE 311

Potential regulator of the mitotic function of yeast type 1 protein phosphatase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P22194|SDS22_SCHPO Protein phosphatase 1 regulatory subunit SDS22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sds22 PE=1 SV=2

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 154/264 (58%), Gaps = 14/264 (5%)

Query: 51  LDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLM 109
           ++L  +R+ S+ S  +    NL+ L LRQN I      P         L EL L DN ++
Sbjct: 43  VELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIESVP-------ETLTELDLYDNLIV 95

Query: 110 KIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILE 169
           +I ++   K L+  D+SFN I +   ++++   L+ L+  +N + ++E +E    L  LE
Sbjct: 96  RIENLDNVKNLTYLDLSFNNIKTIRNINHLKG-LENLFFVQNRIRRIENLEGLDRLTNLE 154

Query: 170 FGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECI 228
            G N++RV+ENL  L NL++LW+G+N+I K  N   L+ +  +S+QSNR+T  +    C+
Sbjct: 155 LGGNKIRVIENLDTLVNLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLA-CL 213

Query: 229 A--LEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIES 286
           +  L ELY+SHNG++   G+  L NL +LDVS+N +  +  +  L  L +LW ++N++ S
Sbjct: 214 SHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSS 273

Query: 287 LESIVEAVAGSRETLTTIYLENNP 310
            + I + ++G ++ L T+Y E NP
Sbjct: 274 FQEIEDELSGLKK-LETVYFEGNP 296

Essential for the mitotic metaphase/anaphase transition. Positively modulates protein phosphatase-1. Possibly by forming a repeating helical rod that is capable of enhancing a PP1-dependent dephosphorylation activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
224114507	337	predicted protein [Populus trichocarpa]	0.872	0.910	0.797	1e-137
255546363	312	protein phosphatases pp1 regulatory subu	0.875	0.987	0.790	1e-135
224142195	336	predicted protein [Populus trichocarpa]	0.869	0.910	0.784	1e-131
449443173	333	PREDICTED: protein phosphatase 1 regulat	0.852	0.900	0.783	1e-131
21536755	328	unknown [Arabidopsis thaliana]	0.855	0.917	0.767	1e-131
15241153	328	leucine-rich repeat-containing protein [	0.823	0.884	0.806	1e-130
357520899	329	Protein phosphatase 1 regulatory subunit	0.823	0.881	0.806	1e-128
363814364	330	uncharacterized protein LOC100781548 [Gl	0.823	0.878	0.786	1e-127
225445122	333	PREDICTED: protein phosphatase 1 regulat	0.835	0.882	0.802	1e-127
147788249	324	hypothetical protein VITISV_020599 [Viti	0.835	0.907	0.802	1e-126

>gi|224114507|ref|XP_002332347.1| predicted protein [Populus trichocarpa] gi|222832068|gb|EEE70545.1| predicted protein [Populus trichocarpa]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/311 (79%), Positives = 274/311 (88%), Gaps = 4/311 (1%)

Query: 3   MDGEKQPSAEATNP---DQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT 59
           MDGE Q S   +NP   DQ VEID S+TVLDLTSFQLHDL+SVE   +LTELDLTANRL+
Sbjct: 1   MDGETQ-SPRGSNPEADDQTVEIDPSSTVLDLTSFQLHDLNSVELSPSLTELDLTANRLS 59

Query: 60  SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKK 119
           SLD RI+HLSNL KLSLRQNLIDDAAIEP SRWD+++GL+EL+LRDNKL KIPD  IFK 
Sbjct: 60  SLDPRIAHLSNLIKLSLRQNLIDDAAIEPFSRWDSISGLQELVLRDNKLKKIPDTGIFKS 119

Query: 120 LSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME 179
           L VFDVSFNEITS HGLS  ++TLKELYVSKNEV K+EEI+H + LQILE GSNRLRVME
Sbjct: 120 LLVFDVSFNEITSLHGLSKASNTLKELYVSKNEVTKIEEIDHLYQLQILELGSNRLRVME 179

Query: 180 NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNG 239
           N+ N T+LQELW+GRNRIKVVNLCGLKCIKK+SLQSNRLTSMKGFEEC+ALEELYLSHNG
Sbjct: 180 NMGNFTSLQELWMGRNRIKVVNLCGLKCIKKLSLQSNRLTSMKGFEECVALEELYLSHNG 239

Query: 240 ISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299
           I+KMEGLSTL NLHVLDVSSNKLT VDDIQNL++LEDLWLNDNQIESL+ + EAV  SRE
Sbjct: 240 IAKMEGLSTLANLHVLDVSSNKLTSVDDIQNLTQLEDLWLNDNQIESLKGVAEAVISSRE 299

Query: 300 TLTTIYLENNP 310
            LTTIYLENNP
Sbjct: 300 KLTTIYLENNP 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546363|ref|XP_002514241.1| protein phosphatases pp1 regulatory subunit, putative [Ricinus communis] gi|223546697|gb|EEF48195.1| protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/310 (79%), Positives = 269/310 (86%), Gaps = 2/310 (0%)

Query: 3   MDGEKQP--SAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTS 60
           MDG  QP       + DQ VEID S+T+LDLTSFQLHDLDSVE    L ELDLTANRL+ 
Sbjct: 1   MDGATQPPRGLNLDSEDQTVEIDPSSTILDLTSFQLHDLDSVELSPGLIELDLTANRLSR 60

Query: 61  LDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKL 120
           LD RI+HLSNLKKLSLRQNL+DDAAI+P S W+ L+GLEEL+LRDNKLMKIPDV+IFK L
Sbjct: 61  LDPRIAHLSNLKKLSLRQNLVDDAAIQPFSGWEELSGLEELVLRDNKLMKIPDVTIFKSL 120

Query: 121 SVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN 180
            VFDVSFNEI S +GLS V++TLKELYVSKNEV KMEEI+H + LQ+LE GSNRLRVMEN
Sbjct: 121 LVFDVSFNEIRSLNGLSKVSNTLKELYVSKNEVTKMEEIDHLYQLQMLELGSNRLRVMEN 180

Query: 181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGI 240
           LQNLT LQELWLGRNRIK +NLCGLKCIKK+SLQSNRLTSMKG EEC+ALEELYLSHNGI
Sbjct: 181 LQNLTTLQELWLGRNRIKTINLCGLKCIKKLSLQSNRLTSMKGLEECVALEELYLSHNGI 240

Query: 241 SKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET 300
           SKMEGLSTLVNL VLDVSSNKLT VDDIQNL+++EDLWLNDNQIESLE I EA+ GSRE 
Sbjct: 241 SKMEGLSTLVNLSVLDVSSNKLTSVDDIQNLTQIEDLWLNDNQIESLEGIAEAIVGSREK 300

Query: 301 LTTIYLENNP 310
           LTTIY ENNP
Sbjct: 301 LTTIYFENNP 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142195|ref|XP_002324444.1| predicted protein [Populus trichocarpa] gi|222865878|gb|EEF03009.1| predicted protein [Populus trichocarpa]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/311 (78%), Positives = 275/311 (88%), Gaps = 5/311 (1%)

Query: 3   MDGEKQPSAEATNP---DQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT 59
           MDG + P+   +NP   DQ VEID S+T+LDLTSFQLHDL SV+  ++L ELDLTANRL+
Sbjct: 1   MDGAQPPNG--SNPEADDQTVEIDPSSTILDLTSFQLHDLSSVDLSSSLAELDLTANRLS 58

Query: 60  SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKK 119
           SLD RI+HLSNLKKLSLRQNLIDDAA+EP SRWD+L+ L+EL+LRDNKL KIPD  IFK 
Sbjct: 59  SLDPRIAHLSNLKKLSLRQNLIDDAAVEPFSRWDSLSALQELVLRDNKLKKIPDSGIFKN 118

Query: 120 LSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME 179
           L VFDVSFNEITS HGLS V++TLKELYVSKNEV K+EEI+H + LQILE GSNRLRVME
Sbjct: 119 LLVFDVSFNEITSLHGLSKVSNTLKELYVSKNEVTKIEEIDHLYQLQILELGSNRLRVME 178

Query: 180 NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNG 239
           ++QN T+LQELWLGRNRIKVVNLCGLKCIKK+SLQSNR+TSMKGFEEC+ALEELYLSHNG
Sbjct: 179 SMQNFTSLQELWLGRNRIKVVNLCGLKCIKKLSLQSNRVTSMKGFEECVALEELYLSHNG 238

Query: 240 ISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299
           I+KMEGLSTLVNL VLDVSSNKLT V+DIQNL++LEDLWLNDNQIESLE + EAV  SRE
Sbjct: 239 IAKMEGLSTLVNLRVLDVSSNKLTSVNDIQNLTQLEDLWLNDNQIESLEGVSEAVVSSRE 298

Query: 300 TLTTIYLENNP 310
            LTTIYLENNP
Sbjct: 299 KLTTIYLENNP 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443173|ref|XP_004139355.1| PREDICTED: protein phosphatase 1 regulatory subunit pprA-like [Cucumis sativus] gi|449487955|ref|XP_004157884.1| PREDICTED: protein phosphatase 1 regulatory subunit pprA-like [Cucumis sativus]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/300 (78%), Positives = 269/300 (89%)

Query: 11  AEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSN 70
           +E +   ++ E DL++T LDLTSFQLHDLDS+E P++LTELDLTANRLT+LD RI  LSN
Sbjct: 5   SEPSPVSESKEDDLNSTFLDLTSFQLHDLDSIELPSSLTELDLTANRLTNLDPRIGELSN 64

Query: 71  LKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEI 130
           LKKLSLRQNLI++AA+E +S W+AL+GLEELILRDN++ KIPD SIFK+L VFDVSFNEI
Sbjct: 65  LKKLSLRQNLINNAAVESLSHWNALSGLEELILRDNQMTKIPDASIFKRLLVFDVSFNEI 124

Query: 131 TSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQEL 190
           TS HGLS V++TLKELYVSKNEV KMEE++HF  LQILE GSNRLRVMEN++NLTNLQEL
Sbjct: 125 TSLHGLSKVSNTLKELYVSKNEVTKMEELDHFLQLQILELGSNRLRVMENMENLTNLQEL 184

Query: 191 WLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLV 250
           WLGRNRIK VNLCGLKC+KKISLQSNRLTSM GFE+C+ALEELYLSHNGISK+EG+STLV
Sbjct: 185 WLGRNRIKAVNLCGLKCLKKISLQSNRLTSMTGFEDCVALEELYLSHNGISKIEGVSTLV 244

Query: 251 NLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           NL +LDVSSNKLT V D+QNL+ LEDLWLNDNQIESLE+I E VAGSRE LTTIYLENNP
Sbjct: 245 NLRILDVSSNKLTSVSDVQNLTCLEDLWLNDNQIESLETIAEDVAGSREKLTTIYLENNP 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536755|gb|AAM61087.1| unknown [Arabidopsis thaliana]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/310 (76%), Positives = 265/310 (85%), Gaps = 9/310 (2%)

Query: 1   MDMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTS 60
           M+ D E++P  E         I  SN VLDLTS+QLH LD+VE P NL ELDLTANRL+ 
Sbjct: 1   MNSDKEEEPLEE---------IGDSNNVLDLTSYQLHSLDTVELPPNLIELDLTANRLSG 51

Query: 61  LDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKL 120
           LDSRI+ LS LKKLSLRQNLIDD+A+EP+S WDAL+ LEEL+LRDNKL K+PDVSIF KL
Sbjct: 52  LDSRIAQLSTLKKLSLRQNLIDDSAVEPLSHWDALSDLEELVLRDNKLAKVPDVSIFTKL 111

Query: 121 SVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN 180
            V+D+SFNEITS  G+S  + TLKELYVSKNEV K+ EIEH H+LQILE GSNRLRVMEN
Sbjct: 112 LVYDISFNEITSLEGISKASSTLKELYVSKNEVNKIMEIEHLHNLQILELGSNRLRVMEN 171

Query: 181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGI 240
           L+N T L+ELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEEC+ALEELYLSHNGI
Sbjct: 172 LENFTKLEELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECVALEELYLSHNGI 231

Query: 241 SKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET 300
           SKMEGLS LVNL VLDVS+NKLT VDDIQNL++LEDLWLNDNQIESLE+I EAV GS+E 
Sbjct: 232 SKMEGLSALVNLRVLDVSNNKLTSVDDIQNLTKLEDLWLNDNQIESLEAITEAVTGSKEK 291

Query: 301 LTTIYLENNP 310
           LTTIYLENNP
Sbjct: 292 LTTIYLENNP 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241153|ref|NP_197469.1| leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|27808582|gb|AAO24571.1| At5g19680 [Arabidopsis thaliana] gi|110736219|dbj|BAF00080.1| hypothetical protein [Arabidopsis thaliana] gi|332005354|gb|AED92737.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/290 (80%), Positives = 258/290 (88%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
           EI  SN VLDLTS+QLH LD+VE P NL ELDLTANRL+ LDSRI+ LS LKKLSLRQNL
Sbjct: 12  EIGDSNNVLDLTSYQLHSLDTVELPPNLIELDLTANRLSGLDSRIAQLSTLKKLSLRQNL 71

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT 140
           IDD+A+EP+S WDAL+ LEEL+LRDNKL K+PDVSIF KL V+D+SFNEITS  G+S  +
Sbjct: 72  IDDSAVEPLSHWDALSDLEELVLRDNKLAKVPDVSIFTKLLVYDISFNEITSLEGISKAS 131

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV 200
            TLKELYVSKNEV K+ EIEH H+LQILE GSNRLRVMENL+N T L+ELWLGRNRIKVV
Sbjct: 132 STLKELYVSKNEVNKIMEIEHLHNLQILELGSNRLRVMENLENFTKLEELWLGRNRIKVV 191

Query: 201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN 260
           NLCGLKCIKKISLQSNRLTSMKGFEEC+ALEELYLSHNGISKMEGLS LVNL VLDVS+N
Sbjct: 192 NLCGLKCIKKISLQSNRLTSMKGFEECVALEELYLSHNGISKMEGLSALVNLRVLDVSNN 251

Query: 261 KLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           KLT VDDIQNL++LEDLWLNDNQIESLE+I EAV GS+E LTTIYLENNP
Sbjct: 252 KLTSVDDIQNLTKLEDLWLNDNQIESLEAITEAVTGSKEKLTTIYLENNP 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520899|ref|XP_003630738.1| Protein phosphatase 1 regulatory subunit [Medicago truncatula] gi|355524760|gb|AET05214.1| Protein phosphatase 1 regulatory subunit [Medicago truncatula]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/290 (80%), Positives = 257/290 (88%)

Query: 20  VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQN 79
           +E D S+T+LDLTS+QLHDLDSVE P+NLTELDLTANRL++LD RI+ LS+LK LSLRQN
Sbjct: 12  LEDDESSTLLDLTSYQLHDLDSVELPSNLTELDLTANRLSTLDPRIAQLSDLKNLSLRQN 71

Query: 80  LIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNV 139
           LI DAA+ P+S W+ L+ LEEL+LRDN+L  IPDVSIFKKL VFDVSFNEI S HG+S V
Sbjct: 72  LITDAAVVPLSSWNTLSSLEELVLRDNQLKNIPDVSIFKKLLVFDVSFNEIASLHGVSRV 131

Query: 140 TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKV 199
            +TLKELYVSKNEV K+EEIEHFH LQILE GSN+LRVMENLQ L NLQELWLGRNRIKV
Sbjct: 132 CNTLKELYVSKNEVTKIEEIEHFHQLQILELGSNKLRVMENLQTLVNLQELWLGRNRIKV 191

Query: 200 VNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSS 259
           VNLCGLKCIKKISLQSNRLTSM GFE CIALEELYLSHNGI+KMEGLS+L NL VLDVSS
Sbjct: 192 VNLCGLKCIKKISLQSNRLTSMIGFEGCIALEELYLSHNGITKMEGLSSLANLRVLDVSS 251

Query: 260 NKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
           NKLT VDDI NL++LEDLWLNDNQIESLE   EAVAGSRE LTTIYLENN
Sbjct: 252 NKLTSVDDIHNLTQLEDLWLNDNQIESLEGFAEAVAGSREKLTTIYLENN 301

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814364|ref|NP_001242821.1| uncharacterized protein LOC100781548 [Glycine max] gi|255636570|gb|ACU18623.1| unknown [Glycine max]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/290 (78%), Positives = 259/290 (89%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
           E D S+T+LDLTS+QLHDLDSVE P +LTELDLTANRL++LD RI +LS+L+KLSLRQNL
Sbjct: 14  EDDPSSTLLDLTSYQLHDLDSVELPPSLTELDLTANRLSTLDPRIGNLSHLQKLSLRQNL 73

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT 140
           I DAA+ P+S W+AL+ LEEL+LRDN+   IPDVS+FKKL VFDV+FNEI+S HGLS V+
Sbjct: 74  ISDAAVLPLSSWNALSSLEELVLRDNQFKNIPDVSVFKKLLVFDVAFNEISSLHGLSRVS 133

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV 200
           DTLKELYVSKNEV  +EEIEHFH LQ+LE GSN+LRVMENLQ+L NLQELWLGRNRIKVV
Sbjct: 134 DTLKELYVSKNEVAMIEEIEHFHQLQLLELGSNKLRVMENLQSLENLQELWLGRNRIKVV 193

Query: 201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN 260
           NLCGLKCIKKISLQSNRLTSM GF+ C+ LEELYLSHNGI+KMEGLS+LVNL VLDVSSN
Sbjct: 194 NLCGLKCIKKISLQSNRLTSMMGFDGCVTLEELYLSHNGIAKMEGLSSLVNLRVLDVSSN 253

Query: 261 KLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           K+TLVDDI NL++LEDLWLNDNQI SLE I EAV GS+E LTTIYLENNP
Sbjct: 254 KITLVDDIVNLTKLEDLWLNDNQIASLEGIAEAVTGSKEKLTTIYLENNP 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445122|ref|XP_002283839.1| PREDICTED: protein phosphatase 1 regulatory subunit pprA [Vitis vinifera] gi|297738769|emb|CBI28014.3| unnamed protein product [Vitis vinifera]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/294 (80%), Positives = 266/294 (90%)

Query: 17  DQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSL 76
           + A++ D S+TVLDLTS+QLH L+S++ P NLTELDLTANRLT LDSRI  LSNLKKLSL
Sbjct: 12  ESAIQYDGSSTVLDLTSYQLHSLESIDIPFNLTELDLTANRLTVLDSRIGLLSNLKKLSL 71

Query: 77  RQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL 136
           RQNL+DDA ++ IS WDA++GLEEL+LRDNKL KIPDVSIFKKL VFDVSFNEI+S +GL
Sbjct: 72  RQNLLDDAGVDMISGWDAISGLEELVLRDNKLTKIPDVSIFKKLLVFDVSFNEISSLNGL 131

Query: 137 SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNR 196
           + V++TLKELYVSKNEV  MEEI+HFH+LQILE GSNRLRVMENLQ LT L+ELWLGRNR
Sbjct: 132 AKVSNTLKELYVSKNEVTTMEEIDHFHELQILELGSNRLRVMENLQTLTKLKELWLGRNR 191

Query: 197 IKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLD 256
           I+VVNLCGLKCI+KISLQSNRLTSMKGFE+C+ALEELYLSHNGI+KMEGLSTLVNL VLD
Sbjct: 192 IRVVNLCGLKCIEKISLQSNRLTSMKGFEDCVALEELYLSHNGIAKMEGLSTLVNLRVLD 251

Query: 257 VSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
            SSNKLT VDDI+NL++LEDLWLNDNQI SLE I EAVAGSRE LTTIYLENNP
Sbjct: 252 ASSNKLTAVDDIENLTQLEDLWLNDNQITSLEGIAEAVAGSREKLTTIYLENNP 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788249|emb|CAN64835.1| hypothetical protein VITISV_020599 [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/294 (80%), Positives = 265/294 (90%)

Query: 17  DQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSL 76
           + A++ D S+TVLDLTS+QLH L+S++ P NLTELDLTANRLT LDSRI  LSNLKKLSL
Sbjct: 3   ESAIQYDGSSTVLDLTSYQLHSLESIDIPFNLTELDLTANRLTVLDSRIGLLSNLKKLSL 62

Query: 77  RQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL 136
           RQNL+DDA ++ IS WDA++GLEEL+LRDNKL KIPDVSIFKKL VFDVSFNEI+S +GL
Sbjct: 63  RQNLLDDAGVDMISGWDAISGLEELVLRDNKLTKIPDVSIFKKLLVFDVSFNEISSLNGL 122

Query: 137 SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNR 196
           + V++TLKELYVSKNEV  MEEI+HFH+LQILE GSNRLRVMENLQ LT L+ELWLGRNR
Sbjct: 123 AKVSNTLKELYVSKNEVTTMEEIDHFHELQILELGSNRLRVMENLQTLTKLKELWLGRNR 182

Query: 197 IKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLD 256
           I+VVNLCGLKCI+KISLQSNRLTSMKGFE+C+ALEELYLSHNGI+KMEGLSTLVNL VLD
Sbjct: 183 IRVVNLCGLKCIEKISLQSNRLTSMKGFEDCVALEELYLSHNGIAKMEGLSTLVNLRVLD 242

Query: 257 VSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
            SSNKLT VDDI NL++LEDLWLNDNQI SLE I EAVAGSRE LTTIYLENNP
Sbjct: 243 ASSNKLTAVDDIXNLTQLEDLWLNDNQITSLEGIAEAVAGSREKLTTIYLENNP 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
TAIR|locus:2183144	328	AT5G19680 [Arabidopsis thalian	0.823	0.884	0.772	1.2e-113
DICTYBASE|DDB_G0284039	336	pprA "Protein phosphatase 1 re	0.823	0.863	0.387	7.1e-45
MGI|MGI:1913635	361	Ppp1r7 "protein phosphatase 1,	0.75	0.731	0.364	7.3e-43
UNIPROTKB|Q15435	360	PPP1R7 "Protein phosphatase 1	0.75	0.733	0.361	7.3e-43
RGD|1308169	360	Ppp1r7 "protein phosphatase 1,	0.75	0.733	0.368	9.3e-43
UNIPROTKB|Q3T0W4	360	PPP1R7 "Protein phosphatase 1	0.75	0.733	0.354	8.4e-42
ZFIN|ZDB-GENE-051113-288	345	ppp1r7 "protein phosphatase 1,	0.855	0.872	0.325	2.8e-41
SGD|S000001676	338	SDS22 "Regulatory subunit of t	0.755	0.786	0.372	1.1e-37
ASPGD|ASPL0000056701	355	AN10088 [Emericella nidulans (	0.843	0.836	0.330	4.9e-37
UNIPROTKB|G4N707	381	MGG_03649 "Protein phosphatase	0.747	0.690	0.336	2.4e-35

TAIR|locus:2183144 AT5G19680 [Arabidopsis thaliana (taxid:3702)]

 Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
 Identities = 224/290 (77%), Positives = 246/290 (84%)

Query:    21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
             EI  SN VLDLTS+QLH LD+VE P NL ELDLTANRL+ LDSRI+ LS LKKLSLRQNL
Sbjct:    12 EIGDSNNVLDLTSYQLHSLDTVELPPNLIELDLTANRLSGLDSRIAQLSTLKKLSLRQNL 71

Query:    81 IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT 140
             IDD+A+EP+S WDAL+ LEEL+LRDNKL K+PDVSIF KL V+D+SFNEITS  G+S  +
Sbjct:    72 IDDSAVEPLSHWDALSDLEELVLRDNKLAKVPDVSIFTKLLVYDISFNEITSLEGISKAS 131

Query:   141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVV 200
              TLKELYVSKNEV K+ EIEH H+LQILE GSNRLRVM              GRNRIKVV
Sbjct:   132 STLKELYVSKNEVNKIMEIEHLHNLQILELGSNRLRVMENLENFTKLEELWLGRNRIKVV 191

Query:   201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN 260
             NLCGLKCIKKISLQSNRLTSMKGFEEC+ALEELYLSHNGISKMEGLS LVNL VLDVS+N
Sbjct:   192 NLCGLKCIKKISLQSNRLTSMKGFEECVALEELYLSHNGISKMEGLSALVNLRVLDVSNN 251

Query:   261 KLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
             KLT VDDIQNL++LEDLWLNDNQIESLE+I EAV GS+E LTTIYLENNP
Sbjct:   252 KLTSVDDIQNLTKLEDLWLNDNQIESLEAITEAVTGSKEKLTTIYLENNP 301

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0284039 pprA "Protein phosphatase 1 regulatory subunit 7" [Dictyostelium discoideum (taxid:44689)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 120/310 (38%), Positives = 179/310 (57%)

Query:    10 SAEATNPDQAVEIDLSN--TVLDLTSFQLHDL--DSVEFPTNLTELDLTANRLTSLDSRI 65
             ++E    ++ +E +     T LDLT  Q H    DS   P  L +LDLT  ++T +++ I
Sbjct:     9 NSEEIKENEKIESETEEPITYLDLTG-QPHTSIGDSYNIPETLLDLDLTNCKITKIEN-I 66

Query:    66 SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDV 125
             +HL NLKKL  RQNLI+   IE I   D L  LE L L DNKL  I ++  F+ L+  D+
Sbjct:    67 NHLKNLKKLCFRQNLIEK--IENI---DQLKELESLDLYDNKLQVIENIKDFQSLTYLDL 121

Query:   126 SFNEITSSHGLSNVTDT--LKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXX 183
             SFNEI     LS + D   +KELY++ N++ K+E ++    ++ LE GSNRLR +     
Sbjct:   122 SFNEIRIVENLS-IKDIPKIKELYLANNKITKIENLQELVPIKNLELGSNRLREIENLEN 180

Query:   184 XXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGI 240
                      GRN+I ++  +  L  ++ +SLQSNRLT +  KG      LEELYLSHNGI
Sbjct:   181 LVNIETLWLGRNKITEIKGINHLSHLRILSLQSNRLTEIGVKGLVGLNCLEELYLSHNGI 240

Query:   241 SKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET 300
             + ++GL +L  L  LD+S+NK+  +  +  L  L+++W NDN ++S+++I + V  S   
Sbjct:   241 TDIDGLQSLKQLRTLDISANKIKTLVGLNELPDLDEIWCNDNLVDSMDNIEQQVTKS--- 297

Query:   301 LTTIYLENNP 310
             +  +Y E NP
Sbjct:   298 IKCLYFERNP 307

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1913635 Ppp1r7 "protein phosphatase 1, regulatory (inhibitor) subunit 7" [Mus musculus (taxid:10090)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 100/274 (36%), Positives = 165/274 (60%)

Query:    38 DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
             D++++    +  ++DLT  R+  ++  +  L  +K L LRQNLI    IE +   + L  
Sbjct:    69 DMETINLDRDAEDVDLTHYRIGKIEG-LEVLKKVKSLCLRQNLIK--CIENL---EELQS 122

Query:    98 LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
             L EL L DN++ KI ++    +L V D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct:   123 LRELDLYDNQIKKIENLEALTELEVLDISFNMLRNIEGIDKLTQ-LKKLFLVNNKINKIE 181

Query:   158 EIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSN 216
              I + H LQ+LE GSNR+R +              G+N+I K+ NL  L  +  +S+QSN
Sbjct:   182 NISNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSVQSN 241

Query:   217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
             RL  ++G +  + L ELYLS+NGI  +EGL     L +LD++SN++  +++I +L+ L++
Sbjct:   242 RLAKIEGLQSLVNLRELYLSNNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQE 301

Query:   277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
              W+NDN +ES   + E + G+R +L T+YLE NP
Sbjct:   302 FWMNDNLLESWSDLDE-LKGAR-SLETVYLERNP 333

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q15435 PPP1R7 "Protein phosphatase 1 regulatory subunit 7" [Homo sapiens (taxid:9606)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 99/274 (36%), Positives = 164/274 (59%)

Query:    38 DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
             D++++    +  ++DL   R+  ++     L  +K L LRQNLI    IE +   + L  
Sbjct:    68 DMETINLDRDAEDVDLNHYRIGKIEG-FEVLKKVKTLCLRQNLIK--CIENL---EELQS 121

Query:    98 LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
             L EL L DN++ KI ++    +L + D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct:   122 LRELDLYDNQIKKIENLEALTELEILDISFNLLRNIEGVDKLT-RLKKLFLVNNKISKIE 180

Query:   158 EIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSN 216
              + + H LQ+LE GSNR+R +              G+N+I K+ NL  L  +  +S+QSN
Sbjct:   181 NLSNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQSN 240

Query:   217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
             RLT ++G +  + L ELYLSHNGI  +EGL     L +LD++SN++  +++I +L+ L++
Sbjct:   241 RLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQE 300

Query:   277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
              W+NDN +ES   + E + G+R +L T+YLE NP
Sbjct:   301 FWMNDNLLESWSDLDE-LKGAR-SLETVYLERNP 332

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030234 "enzyme regulator activity" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=TAS

GO:0050790 "regulation of catalytic activity" evidence=NAS

RGD|1308169 Ppp1r7 "protein phosphatase 1, regulatory subunit 7" [Rattus norvegicus (taxid:10116)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 101/274 (36%), Positives = 162/274 (59%)

Query:    38 DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
             D++++    +  ++DL   R+  ++     L  +K L LRQNLI    IE +   D L  
Sbjct:    68 DMETISLDRDAEDVDLNHYRIGKIEG-FEVLKKVKSLCLRQNLIK--CIENL---DELQS 121

Query:    98 LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
             L EL L DN++ KI ++    +L V D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct:   122 LRELDLYDNQIKKIENLEALTELEVLDISFNLLRNIEGIDKLTQ-LKKLFLVNNKINKIE 180

Query:   158 EIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSN 216
              I     LQ+LE GSNR+R +              G+N+I K+ NL  L  +  +S+QSN
Sbjct:   181 NISTLQQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALSNLTVLSMQSN 240

Query:   217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
             RLT ++G +  + L ELYLSHNGI  +EGL     L +LD++SN++  +++I +L+ L++
Sbjct:   241 RLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQE 300

Query:   277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
              W+NDN +ES   + E + G+R +L T+YLE NP
Sbjct:   301 FWMNDNLLESWSDLDE-LKGAR-SLETVYLERNP 332

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q3T0W4 PPP1R7 "Protein phosphatase 1 regulatory subunit 7" [Bos taurus (taxid:9913)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 97/274 (35%), Positives = 162/274 (59%)

Query:    38 DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
             D++++    +  ++DL   R+  ++     L  +K L LRQNLI    IE +   + L  
Sbjct:    68 DMETISLDRDAEDVDLNHYRIGKIEG-FEVLKKVKTLCLRQNLIK--CIENL---EGLQS 121

Query:    98 LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
             L EL L DN++ +I ++    +L V D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct:   122 LRELDLYDNQIRRIENLDALTELEVLDISFNLLRNIEGIDKLT-RLKKLFLVNNKINKIE 180

Query:   158 EIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSN 216
              I   H LQ+LE GSNR+R +              G+N+I K+ NL  L  +  +S+QSN
Sbjct:   181 NISSLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQSN 240

Query:   217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
             RLT ++G +  + L ELYLSHNGI  +EGL     L +LD++SN++  ++++ +L+ L++
Sbjct:   241 RLTKIEGLQSLVNLRELYLSHNGIEVIEGLDNNNKLTMLDIASNRIKKIENVSHLTELQE 300

Query:   277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
              W+NDN ++    + E + G+R +L T+YLE NP
Sbjct:   301 FWMNDNLLDCWSDLDE-LKGAR-SLETVYLERNP 332

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-051113-288 ppp1r7 "protein phosphatase 1, regulatory (inhibitor) subunit 7" [Danio rerio (taxid:7955)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 102/313 (32%), Positives = 173/313 (55%)

Query:     1 MDMDGEKQPSAEATNPDQAV--EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRL 58
             +D  GE + S +     +++  E+D       +      D+D++       ++DL   R+
Sbjct:    14 VDRRGESEESGDDETKRKSLNGEVDSLQAPSTVPEESPVDMDTITLDPEEEDVDLVHCRI 73

Query:    59 TSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFK 118
               ++  +  L   K +SLRQNLI     + I   ++L  L EL L DN++ K+ ++    
Sbjct:    74 GKIEG-LEVLLKAKTISLRQNLI-----KRIENLESLVSLRELDLYDNQIRKLENLQALT 127

Query:   119 KLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM 178
             +L   DVSFN +    GL ++T  +K+L++  N++  +  ++H   LQ+LE GSNR+RV+
Sbjct:   128 ELEQLDVSFNLLRKIEGLDSLTK-VKKLFLLHNKIASIANLDHLTSLQMLELGSNRIRVI 186

Query:   179 XXXXXXXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSH 237
                           G N+I ++ NL GL  +  +S+QSNR+T ++G +  + L ELYLSH
Sbjct:   187 ENLDSLSSLESLFLGTNKITQLQNLDGLHNLTVLSIQSNRITKLEGLQNLVNLRELYLSH 246

Query:   238 NGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGS 297
             NGI  MEGL     L  LD+++N++  +++I +L+ L++ W+NDNQIE+   + E    +
Sbjct:   247 NGIEVMEGLENNKKLSTLDIAANRIKKIENISHLTDLKEFWMNDNQIENWADLDELK--N 304

Query:   298 RETLTTIYLENNP 310
              + L T+YLE NP
Sbjct:   305 AKGLETVYLERNP 317

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

SGD|S000001676 SDS22 "Regulatory subunit of the type 1 protein phosphatase (PP1) Glc7p" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 104/279 (37%), Positives = 161/279 (57%)

Query:    43 EFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101
             + P ++  +DL   ++ SL D  +    NLK+L LRQNLI+  +   +   D +  L+  
Sbjct:    39 DLPDDVEVIDLVHLKIKSLEDLNLYRFKNLKQLCLRQNLIESISEVEVLPHDKIVDLD-- 96

Query:   102 ILRDNKLMKIP-DVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIE 160
                DNK+  I  +V+   KL+  D+SFN+I     L N+TD L+ LY  +N + K+E + 
Sbjct:    97 -FYDNKIKHISSNVNKLTKLTSLDLSFNKIKHIKNLENLTD-LENLYFVQNSISKIENLS 154

Query:   161 HFHDLQILEFGSNRLRVMXXXXXXXXXXXXXX--GRNRI-KVVNLCGLKCIKKISLQSNR 217
                 L+ LE G N++  +                G+N I +++NL  LK +K +S+QSN+
Sbjct:   155 TLKSLKNLELGGNKVHSIEPDSFEGLSNLEEIWLGKNSIPRLINLHPLKNLKILSIQSNK 214

Query:   218 LTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDL 277
             L  ++  EE   LEELYLSHN I+K+EGL   + L  LDV+SNK+T ++++ +LS L D+
Sbjct:   215 LKKIENLEELTNLEELYLSHNFITKIEGLEKNLKLTTLDVTSNKITSLENLNHLSNLTDI 274

Query:   278 WLNDNQIE-SLESIVEAVAG-SRETLTTIYLENNPQNLQ 314
             W + N+I+ S ES+ E ++  SR  L TIYLE NP  L+
Sbjct:   275 WASFNKIDQSFESLGENLSALSR--LETIYLEGNPIQLE 311

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0071862 "protein phosphatase type 1 activator activity" evidence=IGI

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051457 "maintenance of protein location in nucleus" evidence=IMP

GO:0000164 "protein phosphatase type 1 complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IMP

GO:0004865 "protein serine/threonine phosphatase inhibitor activity" evidence=IGI;IMP

ASPGD|ASPL0000056701 AN10088 [Emericella nidulans (taxid:162425)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 101/306 (33%), Positives = 169/306 (55%)

Query:     8 QPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPT-NLTELDLTANRLTS-LDSRI 65
             +P A  TNP+   + D S++          D D +E    ++ ++DL   R+ S L  R+
Sbjct:    14 EPKATITNPEALEDPDYSDSDAPPVEEIEADEDLLEDEDKDVEDIDLVHCRIHSILALRL 73

Query:    66 SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDV 125
                + L++L LRQN I    + P S  + L   +EL L DN +  +  +  F  L+  D+
Sbjct:    74 ERFTKLQRLCLRQNQISRIEL-PSSLGETL---QELDLYDNLISHLKGLDDFHNLTSLDL 129

Query:   126 SFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXX 185
             SFN++     +S++   LK+LY  +N++ K+E +E   +++ LE G+N++R +       
Sbjct:   130 SFNKLKHIKNISHLVK-LKDLYFVQNKISKIEGLEGLTEIKNLELGANKIREIENLETLS 188

Query:   186 XXXXXXXGRNRI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME 244
                    G+N+I ++ NL  L  ++ +S+QSNRLTS+KG      LEELY+SHN I+ + 
Sbjct:   189 ALEELWLGKNKITEMKNLDALTNLRILSIQSNRLTSLKGLSSLKNLEELYVSHNAITDLA 248

Query:   245 GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTI 304
             GL +   L VLD S+N+++ ++ + +L  LE+LW ++NQ+ S    VE     +E L T+
Sbjct:   249 GLESNNALRVLDFSNNQVSKLEHLSHLKELEELWASNNQLSSFNE-VERELKDKENLKTV 307

Query:   305 YLENNP 310
             Y E NP
Sbjct:   308 YFEGNP 313

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0071862 "protein phosphatase type 1 activator activity" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

UNIPROTKB|G4N707 MGG_03649 "Protein phosphatase 1 regulatory subunit SDS22" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 92/273 (33%), Positives = 154/273 (56%)

Query:    45 PTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG-LEELI 102
             P +  EL+ T +R+ S+ S ++     +  L LRQN+I +  I+ ++    LAG L+EL 
Sbjct:    91 PLDTEELNATHSRIRSIPSLKLERFKQVVSLCLRQNVIQE--IDGLA---CLAGTLQELD 145

Query:   103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF 162
             L DN +  I  +   K L+  D+SFN+I     ++++T+ L +L+   N++  +E +E  
Sbjct:   146 LYDNLITHIKGLGELKALTWLDLSFNKIKRIENVNHLTE-LTDLFFVANKIRTIENLEGL 204

Query:   163 HDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSNRLTSM 221
             + L++LE GSNR+R M               +N+I ++  L GL  ++ +S+QSNR+  +
Sbjct:   205 NKLRMLELGSNRIREMQNLDSLKELQELYVAKNKITQLTGLAGLPKLRLLSIQSNRIQDL 264

Query:   222 KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
                ++   LEELY++HN ++ +EGL   +NL VLDVS+N+++ +  +  L  L D W + 
Sbjct:   265 SPLKDVHTLEELYITHNALTSLEGLEHNINLKVLDVSNNQISSLKGLGPLKELTDFWASY 324

Query:   282 NQIESLESIVEAVAGSRETLTTIYLENNPQNLQ 314
             NQI      VE     +E L T+YLE NP  L+
Sbjct:   325 NQIADFAE-VEKELKDKENLETVYLEGNPLQLR 356

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_2110009	hypothetical protein (338 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00440129	annotation not avaliable (251 aa)			•						0.498
	fgenesh4_pg.C_scaffold_18994000001	hypothetical protein (346 aa)			•						0.470
	gw1.64.364.1	hypothetical protein (394 aa)			•						0.464
	eugene3.00410223	hypothetical protein (478 aa)			•						0.458
	eugene3.25320001	hypothetical protein (303 aa)			•						0.456
	fgenesh4_pg.C_scaffold_11988000001	hypothetical protein (315 aa)			•						0.452
	eugene3.18390001	hypothetical protein (628 aa)			•						0.437
	eugene3.00161216	annotation not avaliable (392 aa)			•						0.434
	eugene3.01850022	hypothetical protein (331 aa)			•						0.432
	eugene3.00970008	hypothetical protein (481 aa)			•						0.425

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	352
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	6e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 63.1 bits (153), Expect = 5e-11
 Identities = 69/303 (22%), Positives = 113/303 (37%), Gaps = 14/303 (4%)

Query: 35  QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDA 94
               L        L+   L+ + ++SLD   + L+ L   SL  NL        IS    
Sbjct: 57  NTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL--RSNISELLE 114

Query: 95  LAGLEELILRDNKLMKIPDVSIF--KKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNE 152
           L  L  L L +N +  IP +       L   D+S N+I S          LK L +S N+
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174

Query: 153 VPKMEEIEHFH-DLQILEFGSNRLRVMENLQN-LTNLQELWLGRNRIKVVNLCGLKCIK- 209
           +  + ++     +L  L+   N++  +      L+ L+EL L  N I  +          
Sbjct: 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNL 234

Query: 210 -KISLQSNRLT-SMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDD 267
             + L +N+L    +       LE L LS+N IS +  L +L NL  LD+S N L+    
Sbjct: 235 SGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP 294

Query: 268 IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIY 327
           +  L     L L    + +L   ++A+     ++       +          S   S   
Sbjct: 295 LIAL-----LLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNN 349

Query: 328 SRL 330
              
Sbjct: 350 LWT 352

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 6/175 (3%)

Query: 25  SNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD 83
           +   LDL+  ++  L S +    NL  LDL+ N L+ L   +S+LSNL  L L  N I D
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD 200

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDT 142
             + P    + L+ LEEL L +N ++++   +S  K LS  ++S N++            
Sbjct: 201 --LPPEI--ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256

Query: 143 LKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
           L+ L +S N++  +  +    +L+ L+   N L     L  L  L    L    +
Sbjct: 257 LETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLL 311

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 59/258 (22%), Positives = 94/258 (36%), Gaps = 56/258 (21%)

Query: 68  LSNLKKLSLRQNLIDDAAIEPI-SRWDALAGLEELILRDNKLMKIPDV-----SIFKK-- 119
           L  L+ L L  N + + A + + S       L+EL L  N+  +IP           K  
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81

Query: 120 -LSVFDVSFNEIT--SSHGLSNVT--DTLKELYVSKNEVPKMEE-------IEHFHDLQI 167
            L   D+S N +       L ++    +L+EL ++ N +             +    L+ 
Sbjct: 82  GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141

Query: 168 LEFGSNRL------RVMENLQNLTNLQELWLGRNRIKV-------VNLCGLKCIKKISLQ 214
           L  G NRL       + + L+   +L+EL L  N I           L     ++ + L 
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201

Query: 215 SNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVD-------D 267
           +N LT     E   AL E             L++L +L VL++  N LT           
Sbjct: 202 NNGLTD----EGASALAE------------TLASLKSLEVLNLGDNNLTDAGAAALASAL 245

Query: 268 IQNLSRLEDLWLNDNQIE 285
           +     L  L L+ N I 
Sbjct: 246 LSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 251 NLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESI 290
           NL  LD+S+N++T +  + NL  LE L L+ N+I  L  +
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPL 41

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 230 LEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQN 270
           LE L LS+N I+ +  LS L NL  LD+S NK+T +  + N
Sbjct: 3   LETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 47  NLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
           NL  LDL+ NRLT +       L NLK L L  N +    I P +    L  L  L L  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS--ISPEAFSG-LPSLRSLDLSG 57

Query: 106 NKL 108
           N L
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 73/304 (24%), Positives = 127/304 (41%), Gaps = 46/304 (15%)

Query: 46  TNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
             L  LDL+ N L+  +   +  L NL+ L L  N         ++   +L  L+ L L 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT---SLPRLQVLQLW 340

Query: 105 DNKLM-KIP-DVSIFKKLSVFDVSFNEITSS--HGLSNVTDTLKELYVS---KNEVPK-- 155
            NK   +IP ++     L+V D+S N +T     GL +  +  K +  S   + E+PK  
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Query: 156 -----MEEI------------EHFHDLQILEF---GSNRL--RVMENLQNLTNLQELWLG 193
                +  +              F  L ++ F    +N L  R+     ++ +LQ L L 
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460

Query: 194 RNRI--KVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLS 247
           RN+    + +  G K ++ + L  N+ +    +       L +L LS N +S    + LS
Sbjct: 461 RNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Query: 248 TLVNLHVLDVSSNKLT--LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY 305
           +   L  LD+S N+L+  +      +  L  L L+ NQ   L   +    G+ E+L  + 
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ---LSGEIPKNLGNVESLVQVN 577

Query: 306 LENN 309
           + +N
Sbjct: 578 ISHN 581

Length = 968

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 36/196 (18%)

Query: 44  FPTNLTELDLTANRLTSL-------------DSRISHL----SNLKKLSLRQNLIDDAAI 86
            P  L  L+++ N+LTSL              + ++HL    S L KL +  N +    +
Sbjct: 240 LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 299

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDV-SIFKKLSVFDVSFNEITSSHGLSNVTDTLKE 145
            P        GL+EL + DN+L  +P + S   KL  ++   N++TS   L  +   L+E
Sbjct: 300 LP-------PGLQELSVSDNQLASLPALPSELCKLWAYN---NQLTS---LPTLPSGLQE 346

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGL 205
           L VS N++  +  +    +L  L   +NRL  +  L   + L+EL +  NR+  + +   
Sbjct: 347 LSVSDNQLASLPTLP--SELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLTSLPVLPS 402

Query: 206 KCIKKISLQSNRLTSM 221
           + +K++ +  NRLTS+
Sbjct: 403 E-LKELMVSGNRLTSL 417

Length = 788

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 18/127 (14%)

Query: 45  PTNLTELDLTANRLTSLDSR-----ISHLSNLKKLSLRQNLIDDAAIEPISR-WDALAGL 98
           P  L +L L  NRL           +    +LK+L+L  N I DA I  ++    A   L
Sbjct: 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL 195

Query: 99  EELILRDNKLMKIPDVSI------FKKLSVFDVSFNEITS------SHGLSNVTDTLKEL 146
           E L L +N L      ++       K L V ++  N +T       +  L +   +L  L
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255

Query: 147 YVSKNEV 153
            +S N++
Sbjct: 256 SLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 26/176 (14%)

Query: 161 HFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKIS------LQ 214
                +          +++ L     LQEL L  N +       L+ + + S      L 
Sbjct: 57  CLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLN 116

Query: 215 SNRLTSM------KGFEECI-ALEELYLSHNGISK--MEGLSTLV----NLHVLDVSSNK 261
           +N L         KG ++   ALE+L L  N +     E L+  +    +L  L++++N 
Sbjct: 117 NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176

Query: 262 L------TLVDDIQNLSRLEDLWLNDNQIESLE-SIVEAVAGSRETLTTIYLENNP 310
           +       L + ++    LE L LN+N +     S +     S ++L  + L +N 
Sbjct: 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD 83
          TNL  LDL+ N++T L   +S+L NL+ L L  N I D
Sbjct: 1  TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITD 37

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 186 NLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGI 240
           NL+ L L  NR+ V+      GL  +K + L  N LTS+  + F    +L  L LS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 165 LQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRL 218
           L+ L+  +NRL V+ +   + L NL+ L L  N +  ++     GL  ++ + L  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.82
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.81
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.8
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.64
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.52
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.46
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.45
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.43
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.34
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.88
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.86
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.84
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.55
KOG4341	483	consensus F-box protein containing LRR [General fu	98.5
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.4
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.38
PLN03150	623	hypothetical protein; Provisional	98.38
PLN03150	623	hypothetical protein; Provisional	98.37
KOG4341	483	consensus F-box protein containing LRR [General fu	98.36
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.26
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.18
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.14
KOG2123	388	consensus Uncharacterized conserved protein [Funct	98.13
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.09
PRK15386	426	type III secretion protein GogB; Provisional	97.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.88
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.84
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.77
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.7
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.68
PRK15386	426	type III secretion protein GogB; Provisional	97.48
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.77
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.64
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.46
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.88
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.74
KOG4308	478	consensus LRR-containing protein [Function unknown	93.67
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.49
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	91.61
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.53
KOG4308	478	consensus LRR-containing protein [Function unknown	91.48
smart00370	26	LRR Leucine-rich repeats, outliers.	90.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.9
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	90.19
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.07
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.31
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.48
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.74
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	85.19
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.02
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.05
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.47

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=2.1e-30  Score=230.05  Aligned_cols=288  Identities=30%  Similarity=0.396  Sum_probs=183.3

Q ss_pred             ccCceeecCCCCCcCCCCC--CCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEE
Q 018662           24 LSNTVLDLTSFQLHDLDSV--EFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL  101 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  101 (352)
                      +..+.|++++|++..+...  .-+++|+++++..|.++.||.......+|+.|+|.+|.|+.+..   ..+..++-|+.|
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s---e~L~~l~alrsl  154 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTS---EELSALPALRSL  154 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccH---HHHHhHhhhhhh
Confidence            4456677777777766543  33577777777777777777654455567777777777766533   345556777788


Q ss_pred             EccCCCCCCCCC--CccccCCcEEEccCCCcccccCCc-ccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccC
Q 018662          102 ILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR  176 (352)
Q Consensus       102 ~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~  176 (352)
                      |++.|.|..++.  +..-.++++|++++|.++.+.... ..+.+|..|.+++|.++.+  ..|.++++|+.|++..|+++
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            888877777664  555567888888888777665433 2356777788888877773  34666788888888887776


Q ss_pred             Ccc--cccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC--cCccccccCcEEECCCCCCCCC--CCCC
Q 018662          177 VME--NLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLS  247 (352)
Q Consensus       177 ~~~--~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~  247 (352)
                      ...  .+.++++|+.+.+..|.+...   .|..+.++++|++..|++..+  .++.++..|+.|++++|.|..+  ++++
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence            553  356777777777777766655   555666777777777766655  2455666666667776666653  4556


Q ss_pred             CCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccc
Q 018662          248 TLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIIL  317 (352)
Q Consensus       248 ~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  317 (352)
                      ..++|+.|++++|.++.+  +.+..++.|++|++++|.|+.+.   ...+..+++|++|||+.|.+..-|.+
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~---e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA---EGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH---hhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            666666666666666655  34455555555555555555333   22334445555555555554444433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=9.9e-31  Score=232.07  Aligned_cols=296  Identities=27%  Similarity=0.373  Sum_probs=179.9

Q ss_pred             cccccCceeecCCCCCcCCCCCCCC-CcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCC
Q 018662           21 EIDLSNTVLDLTSFQLHDLDSVEFP-TNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL   98 (352)
Q Consensus        21 ~~~~~l~~L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L   98 (352)
                      .-.++|+.+.+.+|.++.+|..... .+++.|++.+|.|.++... ++-++.|+.|+|+.|.+..+   ..+.|..-.++
T Consensus        99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i---~~~sfp~~~ni  175 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEI---PKPSFPAKVNI  175 (873)
T ss_pred             hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcc---cCCCCCCCCCc
Confidence            4446777777777777777765544 3477777777766665443 55566666666666665554   23344444556


Q ss_pred             cEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCccc-ccCcceEEccCCcCCCc-------------------
Q 018662           99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKNEVPKM-------------------  156 (352)
Q Consensus        99 ~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~-------------------  156 (352)
                      ++|++++|.|+.+..  |..+.+|..|.+++|+++.++...+. +++|+.|++..|.+.-.                   
T Consensus       176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN  255 (873)
T ss_pred             eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence            666666665554433  44455555555555555555544333 55555555555544432                   


Q ss_pred             -------ccccCCCCCcEEEcCCCccCCc--ccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--
Q 018662          157 -------EEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--  222 (352)
Q Consensus       157 -------~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--  222 (352)
                             ..|..+.++++|+++.|++...  .++.+++.|+.|+++.|.+..+   ....+++|+.|+++.|+++..+  
T Consensus       256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence                   1244445555555555554422  3345555555555555555554   2333455555666655555553  


Q ss_pred             CccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc-----ccccCCCCCCeEEcCCCCCcchHHHHHHHh
Q 018662          223 GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIESLESIVEAVA  295 (352)
Q Consensus       223 ~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  295 (352)
                      .+..+..|+.|+++.|.+..+.  .|.++++|+.||+++|.++..     ..+..+++|+.|.+.||+|+.++   ...+
T Consensus       336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~---krAf  412 (873)
T KOG4194|consen  336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP---KRAF  412 (873)
T ss_pred             HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc---hhhh
Confidence            3445555556666666555543  356778888888888887543     34667888888999999888766   5567


Q ss_pred             ccccCccEeeccCCCccccccccCCccHHHH
Q 018662          296 GSRETLTTIYLENNPQNLQIILLPSDKFSQI  326 (352)
Q Consensus       296 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  326 (352)
                      ..+++|.+|||.+|    .|..+..+.|..+
T Consensus       413 sgl~~LE~LdL~~N----aiaSIq~nAFe~m  439 (873)
T KOG4194|consen  413 SGLEALEHLDLGDN----AIASIQPNAFEPM  439 (873)
T ss_pred             ccCcccceecCCCC----cceeecccccccc
Confidence            78888999999998    6677777788765

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=7.1e-28  Score=243.90  Aligned_cols=290  Identities=24%  Similarity=0.268  Sum_probs=177.6

Q ss_pred             cccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCC-cchhhhhcCCCCcEEeccCCccCccccccccccccCCC
Q 018662           19 AVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG   97 (352)
Q Consensus        19 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~   97 (352)
                      ++....+|++|++++|++++..+...+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..   +..+..+++
T Consensus       113 ~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~---p~~~~~l~~  189 (968)
T PLN00113        113 IFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI---PNSLTNLTS  189 (968)
T ss_pred             HhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC---ChhhhhCcC
Confidence            33344566666666666655444445566777777777766 55666777777777777777766542   234556777


Q ss_pred             CcEEEccCCCCCC-CCC-CccccCCcEEEccCCCcccc-cCCcccccCcceEEccCCcCCC--cccccCCCCCcEEEcCC
Q 018662           98 LEELILRDNKLMK-IPD-VSIFKKLSVFDVSFNEITSS-HGLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGS  172 (352)
Q Consensus        98 L~~L~l~~~~l~~-l~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~  172 (352)
                      |++|++++|.+.. +|. +..+++|++|++++|.+.+. +.....+.+|++|++++|.+..  +..++.+++|+.|++.+
T Consensus       190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  269 (968)
T PLN00113        190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ  269 (968)
T ss_pred             CCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence            7777777776653 444 66677777777777776643 3333446677777777776654  34566777777777777


Q ss_pred             CccC--CcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC-CC
Q 018662          173 NRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK-ME  244 (352)
Q Consensus       173 ~~l~--~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~-~~  244 (352)
                      |.+.  .+..+..+++|+.|++++|.+...   .+..+++|+.|++++|.+... | .+..+++|+.|++++|.+.+ ++
T Consensus       270 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  349 (968)
T PLN00113        270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP  349 (968)
T ss_pred             CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence            7663  334566677777777777766543   455667777777777766544 2 35566777777777776654 22


Q ss_pred             -CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccc
Q 018662          245 -GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQ  314 (352)
Q Consensus       245 -~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  314 (352)
                       .+..+++|+.|++++|++.+.  +.+..+++|+.+++++|.+...   ....+..+++|+.|++++|.+.+.
T Consensus       350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~---~p~~~~~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE---IPKSLGACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc---CCHHHhCCCCCCEEECcCCEeeeE
Confidence             355566677777777666543  3344445555555555555421   112234455566666666554443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=2.3e-26  Score=232.95  Aligned_cols=315  Identities=24%  Similarity=0.245  Sum_probs=171.3

Q ss_pred             cccccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCC-cchhhhhcCCCCcEEeccCCccCccccccccccc
Q 018662           17 DQAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWD   93 (352)
Q Consensus        17 ~~~~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   93 (352)
                      +..+..+.+|++|++++|.+.+..+  +..+++|++|++++|.+. .+|..+.++++|++|++++|.+.+..+   ..+.
T Consensus       205 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~  281 (968)
T PLN00113        205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP---PSIF  281 (968)
T ss_pred             ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc---hhHh
Confidence            3444556778888888887775322  344577778888777776 566667777777777777777665422   3445


Q ss_pred             cCCCCcEEEccCCCCCC-CCC-CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCC--cccccCCCCCcEE
Q 018662           94 ALAGLEELILRDNKLMK-IPD-VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQIL  168 (352)
Q Consensus        94 ~l~~L~~L~l~~~~l~~-l~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L  168 (352)
                      .+++|++|++++|.+.. +|. +..+++|+.|++++|.+.+..+ ....+++|+.|++++|.+..  +..++.+++|+.+
T Consensus       282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L  361 (968)
T PLN00113        282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL  361 (968)
T ss_pred             hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence            56677777777766653 333 5556666666666666554322 22335556666666555543  2234444555555


Q ss_pred             EcCCCccC--------------------------CcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCC
Q 018662          169 EFGSNRLR--------------------------VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLT  219 (352)
Q Consensus       169 ~l~~~~l~--------------------------~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~  219 (352)
                      ++++|.+.                          .+..+..+++|+.|++++|.+...   .+..+++|+.+++++|.+.
T Consensus       362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  441 (968)
T PLN00113        362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ  441 (968)
T ss_pred             ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence            55444432                          112234445555555555544432   3334455555555555444


Q ss_pred             CCc--CccccccCc-----------------------EEECCCCCCCCC-C-CCCCCCCCcEEEcCCCcCCCc--ccccC
Q 018662          220 SMK--GFEECIALE-----------------------ELYLSHNGISKM-E-GLSTLVNLHVLDVSSNKLTLV--DDIQN  270 (352)
Q Consensus       220 ~~~--~~~~~~~L~-----------------------~L~l~~n~l~~~-~-~~~~~~~L~~L~l~~n~l~~~--~~~~~  270 (352)
                      +..  .+..+++|+                       .|++++|++.+. + .+..+++|+.|++++|.+.+.  +.+..
T Consensus       442 ~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  521 (968)
T PLN00113        442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS  521 (968)
T ss_pred             CccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence            331  122334444                       444444444321 1 234445555566666555443  34455


Q ss_pred             CCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeeecc
Q 018662          271 LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDY  350 (352)
Q Consensus       271 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (352)
                      +++|+.|++++|.++...   ...+..+++|+.|++++|.+.+.+   |.. +..          ...+..+++++|.+.
T Consensus       522 l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~Ls~N~l~~~~---p~~-l~~----------l~~L~~l~ls~N~l~  584 (968)
T PLN00113        522 CKKLVSLDLSHNQLSGQI---PASFSEMPVLSQLDLSQNQLSGEI---PKN-LGN----------VESLVQVNISHNHLH  584 (968)
T ss_pred             ccCCCEEECCCCcccccC---ChhHhCcccCCEEECCCCcccccC---Chh-Hhc----------CcccCEEeccCCcce
Confidence            566666666666665321   223445566666666666655554   321 221          345777777777765


Q ss_pred             C
Q 018662          351 G  351 (352)
Q Consensus       351 ~  351 (352)
                      |
T Consensus       585 ~  585 (968)
T PLN00113        585 G  585 (968)
T ss_pred             e
Confidence            4

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=8.6e-27  Score=209.01  Aligned_cols=324  Identities=23%  Similarity=0.328  Sum_probs=162.8

Q ss_pred             CCCCCCCCCCccCCCccccccccccCceeecCCCCCcCCCC-CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCC
Q 018662            1 MDMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQN   79 (352)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~   79 (352)
                      ||+.+.+|++..   ++.-++.+.+++.|.+...++..+|. +..+.+|+.|.+++|++.++-..++.+|.|+.+.+..|
T Consensus        12 vDfsgNDFsg~~---FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N   88 (1255)
T KOG0444|consen   12 VDFSGNDFSGDR---FPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN   88 (1255)
T ss_pred             ccccCCcCCCCc---CchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence            466777776332   23333444556666666666655543 23344455555555554444444444444444444444


Q ss_pred             ccCccccccccccccCCCCcEEEccCCCCCCCCC-Cc------------------------cccCCcEEEccCCCccccc
Q 018662           80 LIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VS------------------------IFKKLSVFDVSFNEITSSH  134 (352)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~------------------------~~~~L~~L~l~~~~~~~~~  134 (352)
                      .++....  ++.+..+..|..||+++|++...|. +.                        ++.-|-.||+++|++..++
T Consensus        89 ~LKnsGi--P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP  166 (1255)
T KOG0444|consen   89 NLKNSGI--PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP  166 (1255)
T ss_pred             ccccCCC--CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC
Confidence            4443321  1233344444444444444444443 33                        3444444444444444444


Q ss_pred             CCcccccCcceEEccCCcCCC--cccccCCCCCcEEEcCCCcc---CCcccccCCCCCcEEEccCCcccee--cCCCCCC
Q 018662          135 GLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSNRL---RVMENLQNLTNLQELWLGRNRIKVV--NLCGLKC  207 (352)
Q Consensus       135 ~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~l---~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~  207 (352)
                      +....+..|++|.+++|.+..  +..+..+.+|+.|.+++.+-   ..+.++..+.+|+.++++.|.+..+  .+..+++
T Consensus       167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~  246 (1255)
T KOG0444|consen  167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRN  246 (1255)
T ss_pred             HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhh
Confidence            444444444444444444332  11233333444444444321   1233344445555555555555544  3444555


Q ss_pred             CCEEEcCCCcCCCCc-CccccccCcEEECCCCCCCCCCC-CCCCCCCcEEEcCCCcC--CCc-ccccCCCCCCeEEcCCC
Q 018662          208 IKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEG-LSTLVNLHVLDVSSNKL--TLV-DDIQNLSRLEDLWLNDN  282 (352)
Q Consensus       208 L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l--~~~-~~~~~~~~L~~L~l~~n  282 (352)
                      |+.|.+++|.++... ......+|++|+++.|+++.+|. +.+++.|+.|.+.+|++  .++ +.++.+..|+.+..++|
T Consensus       247 LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN  326 (1255)
T KOG0444|consen  247 LRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN  326 (1255)
T ss_pred             hheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence            555555555555442 23344555555555555555542 44555566666666654  233 45555666666666666


Q ss_pred             CCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeee
Q 018662          283 QIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQ  348 (352)
Q Consensus       283 ~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (352)
                      .+..+|+.    +..|.+|+.|.|+.|    .+..+|..+.           +...++++|+..++
T Consensus       327 ~LElVPEg----lcRC~kL~kL~L~~N----rLiTLPeaIH-----------lL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  327 KLELVPEG----LCRCVKLQKLKLDHN----RLITLPEAIH-----------LLPDLKVLDLRENP  373 (1255)
T ss_pred             ccccCchh----hhhhHHHHHhccccc----ceeechhhhh-----------hcCCcceeeccCCc
Confidence            66655533    345788888888888    5556665422           24556677766654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=5.3e-26  Score=203.96  Aligned_cols=284  Identities=24%  Similarity=0.320  Sum_probs=234.6

Q ss_pred             ccccccCceeecCCCCCc--CCCC-CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCC
Q 018662           20 VEIDLSNTVLDLTSFQLH--DLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA   96 (352)
Q Consensus        20 ~~~~~~l~~L~l~~~~l~--~~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~   96 (352)
                      +...+.||.++++.|+++  ++|. +..+..|+.|++++|++.++|..+..-+++-.|++++|.|..+   +-..|.+++
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI---Pn~lfinLt  150 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI---PNSLFINLT  150 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC---CchHHHhhH
Confidence            344466677777777665  3443 3446788999999999999988888888999999999988875   334567889


Q ss_pred             CCcEEEccCCCCCCCCC-CccccCCcEEEccCCCccccc-CCcccccCcceEEccCCcCCC---cccccCCCCCcEEEcC
Q 018662           97 GLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSH-GLSNVTDTLKELYVSKNEVPK---MEEIEHFHDLQILEFG  171 (352)
Q Consensus        97 ~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~  171 (352)
                      .|-+||+++|.+..+|+ +..+..|++|++++|++.... ...-.+.+|+.|++++.+-+-   +.++..+.+|..++++
T Consensus       151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS  230 (1255)
T ss_pred             hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence            99999999999999998 888999999999999887643 122236788899998875433   5677888999999999


Q ss_pred             CCccC-CcccccCCCCCcEEEccCCcccee--cCCCCCCCCEEEcCCCcCCCCc-CccccccCcEEECCCCCC--CCCC-
Q 018662          172 SNRLR-VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGI--SKME-  244 (352)
Q Consensus       172 ~~~l~-~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l--~~~~-  244 (352)
                      .|.+. .+..+..+++|+.|++++|.++..  ......+|++|.++.|+++..| .+..+++|+.|++..|.+  .++| 
T Consensus       231 ~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  231 ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence            99986 456688999999999999999988  5556789999999999999997 577899999999999975  4676 


Q ss_pred             CCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          245 GLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       245 ~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      +++++..|+.+..++|++.-+ +.+..|.+|+.|.++.|++..+|+.+-    -++.|..||++.||
T Consensus       311 GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIH----lL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  311 GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIH----LLPDLKVLDLRENP  373 (1255)
T ss_pred             chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhh----hcCCcceeeccCCc
Confidence            588999999999999999877 789999999999999999998886543    35899999999999

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.89  E-value=2.9e-22  Score=191.31  Aligned_cols=260  Identities=28%  Similarity=0.296  Sum_probs=209.8

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  104 (352)
                      .-..|+++++.++.+|. .++++|+.|++.+|.++.+|.   ..++|++|++++|.++...     .  ..++|+.|+++
T Consensus       202 ~~~~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP-----~--lp~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP-----V--LPPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCccc-----C--cccccceeecc
Confidence            46789999999999886 567899999999999999885   3689999999999998741     1  24689999999


Q ss_pred             CCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCC
Q 018662          105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL  184 (352)
Q Consensus       105 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  184 (352)
                      +|.+..+|.  ...+|+.|++++|++..++.   ..++|+.|++++|.+..++.+  ...|+.|++.+|.+..++.+.  
T Consensus       271 ~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~lp--  341 (788)
T PRK15387        271 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPTLP--  341 (788)
T ss_pred             CCchhhhhh--chhhcCEEECcCCccccccc---cccccceeECCCCccccCCCC--cccccccccccCccccccccc--
Confidence            999998875  34678999999999987764   246899999999988875432  346888999999887655432  


Q ss_pred             CCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCC
Q 018662          185 TNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL  264 (352)
Q Consensus       185 ~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~  264 (352)
                      ..|+.|++++|.+..... ..++|+.|.+++|.+..+|..  ..+|+.|++++|.++.++..  +++|+.|++++|+++.
T Consensus       342 ~~Lq~LdLS~N~Ls~LP~-lp~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~Lss  416 (788)
T PRK15387        342 SGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTS  416 (788)
T ss_pred             cccceEecCCCccCCCCC-CCcccceehhhccccccCccc--ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCC
Confidence            479999999999887532 346889999999999888753  36799999999999988754  4689999999999988


Q ss_pred             cccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       265 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      ++.+  +.+|+.|++++|.|+.+|..    +..+++|+.|++++|++.+..
T Consensus       417 IP~l--~~~L~~L~Ls~NqLt~LP~s----l~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        417 LPML--PSGLLSLSVYRNQLTRLPES----LIHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             CCcc--hhhhhhhhhccCcccccChH----HhhccCCCeEECCCCCCCchH
Confidence            7543  35789999999999988753    345789999999999988765

>PLN03210 Resistant to P

Probab=99.88  E-value=4.5e-21  Score=195.50  Aligned_cols=282  Identities=20%  Similarity=0.233  Sum_probs=187.4

Q ss_pred             ccccccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccC
Q 018662           16 PDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL   95 (352)
Q Consensus        16 ~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l   95 (352)
                      ++++...+..|+.|++.++.++.+|....+.+|++|++.++++..++..+..+++|++|+++++....    .++.+..+
T Consensus       581 p~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~----~ip~ls~l  656 (1153)
T PLN03210        581 PEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK----EIPDLSMA  656 (1153)
T ss_pred             CcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC----cCCccccC
Confidence            34455556778888888888888887666788999999999988888888889999999998865333    22346678


Q ss_pred             CCCcEEEccCC-CCCCCCC-CccccCCcEEEccCCC-cccccCCcccccCcceEEccCCcCCC-cccccCCCCCcEEEcC
Q 018662           96 AGLEELILRDN-KLMKIPD-VSIFKKLSVFDVSFNE-ITSSHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFG  171 (352)
Q Consensus        96 ~~L~~L~l~~~-~l~~l~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~  171 (352)
                      ++|++|++.+| .+..+|. +..+++|+.|++++|. +..++. ...+.+|+.|++++|.... ++  ....+|+.|++.
T Consensus       657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i~l~sL~~L~Lsgc~~L~~~p--~~~~nL~~L~L~  733 (1153)
T PLN03210        657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GINLKSLYRLNLSGCSRLKSFP--DISTNISWLDLD  733 (1153)
T ss_pred             CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cCCCCCCCEEeCCCCCCccccc--cccCCcCeeecC
Confidence            88999999887 4667776 7788899999998875 334433 2256788888888875322 22  124578888888


Q ss_pred             CCccCCcccccCCCCCcEEEccCCcccee----------cCCCCCCCCEEEcCCCc-CCCCc-CccccccCcEEECCCC-
Q 018662          172 SNRLRVMENLQNLTNLQELWLGRNRIKVV----------NLCGLKCIKKISLQSNR-LTSMK-GFEECIALEELYLSHN-  238 (352)
Q Consensus       172 ~~~l~~~~~~~~~~~L~~L~l~~~~l~~~----------~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~l~~n-  238 (352)
                      ++.+..++....+++|+.|.+.++.....          ....+++|+.|++++|. +...| .+..+++|+.|++++| 
T Consensus       734 ~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~  813 (1153)
T PLN03210        734 ETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI  813 (1153)
T ss_pred             CCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence            88776554444556666666655321111          12234567777777763 33344 4566777777777765 


Q ss_pred             CCCCCCCCCCCCCCcEEEcCCCc-CCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          239 GISKMEGLSTLVNLHVLDVSSNK-LTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       239 ~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      .+..+|....+++|+.|++++|. +..++.+  .++|+.|++++|.|+.+|..    ...+++|+.|++++|+
T Consensus       814 ~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP~s----i~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        814 NLETLPTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVPWW----IEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             CcCeeCCCCCccccCEEECCCCCcccccccc--ccccCEeECCCCCCccChHH----HhcCCCCCEEECCCCC
Confidence            45555544456677777777654 2222221  34677777777777766532    3445777777777765

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=1.5e-20  Score=179.74  Aligned_cols=259  Identities=21%  Similarity=0.278  Sum_probs=205.2

Q ss_pred             CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEc
Q 018662           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDV  125 (352)
Q Consensus        46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l  125 (352)
                      ..-..|+++++.++++|..+.  ++|+.|++++|.++...     .  .+++|++|++++|+++.+|.  ..++|+.|++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP-----~--lp~~Lk~LdLs~N~LtsLP~--lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLP-----A--LPPELRTLEVSGNQLTSLPV--LPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCC-----C--CCCCCcEEEecCCccCcccC--cccccceeec
Confidence            456789999999999998775  48999999999998741     1  25889999999999999885  3578999999


Q ss_pred             cCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCccceecCCCC
Q 018662          126 SFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGL  205 (352)
Q Consensus       126 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  205 (352)
                      ++|.+..++..   ..+|+.|++++|.+..++.  ..++|+.|++++|.+..++.+  ...|+.|++++|.+.... ...
T Consensus       270 s~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP-~lp  341 (788)
T PRK15387        270 FSNPLTHLPAL---PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLP-TLP  341 (788)
T ss_pred             cCCchhhhhhc---hhhcCEEECcCCccccccc--cccccceeECCCCccccCCCC--cccccccccccCcccccc-ccc
Confidence            99998876652   3678999999999887543  347899999999998765543  246888999999887653 123


Q ss_pred             CCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCc
Q 018662          206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE  285 (352)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~  285 (352)
                      .+|+.|++++|.++.+|.+  .++|+.|++++|.+..++..  +.+|+.|++++|++++++..  .++|+.|++++|.++
T Consensus       342 ~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~Ls  415 (788)
T PRK15387        342 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLT  415 (788)
T ss_pred             cccceEecCCCccCCCCCC--CcccceehhhccccccCccc--ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCC
Confidence            5899999999999988754  46899999999999988754  36799999999999987543  368999999999999


Q ss_pred             chHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeeeccC
Q 018662          286 SLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDYG  351 (352)
Q Consensus       286 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (352)
                      .+|..       ..+|+.|++++|.    +..+|.. |.+          +.++.++++++|.+.|
T Consensus       416 sIP~l-------~~~L~~L~Ls~Nq----Lt~LP~s-l~~----------L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        416 SLPML-------PSGLLSLSVYRNQ----LTRLPES-LIH----------LSSETTVNLEGNPLSE  459 (788)
T ss_pred             CCCcc-------hhhhhhhhhccCc----ccccChH-Hhh----------ccCCCeEECCCCCCCc
Confidence            88743       2468899999995    4466754 332          4677778888877654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.84  E-value=2e-23  Score=178.27  Aligned_cols=281  Identities=26%  Similarity=0.328  Sum_probs=174.2

Q ss_pred             cccCceeecCCCCCcCCCC-CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEE
Q 018662           23 DLSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL  101 (352)
Q Consensus        23 ~~~l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  101 (352)
                      ++.|+++|+-.|.++.+|+ ++.+.+|..|++++|++..+| .|.+|..|+++.++.|.+...   +.+.+..++++.+|
T Consensus       182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~l---pae~~~~L~~l~vL  257 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEML---PAEHLKHLNSLLVL  257 (565)
T ss_pred             HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhh---HHHHhcccccceee
Confidence            5555666666666665543 344555555555555555555 455555555555555555443   22233345555555


Q ss_pred             EccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc------------------------
Q 018662          102 ILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM------------------------  156 (352)
Q Consensus       102 ~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------------------  156 (352)
                      |++.|+++.+|+ +..+++|..||+++|.+++.+...+.+ +|+.|.+.+|.+.++                        
T Consensus       258 DLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg  336 (565)
T KOG0472|consen  258 DLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG  336 (565)
T ss_pred             eccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence            555555555554 444555555555555555555444444 555555555433221                        


Q ss_pred             -------------------ccccCCCCCcEEEcCCCccCC-cccccCCC---CCcEEEccCCc-----------------
Q 018662          157 -------------------EEIEHFHDLQILEFGSNRLRV-MENLQNLT---NLQELWLGRNR-----------------  196 (352)
Q Consensus       157 -------------------~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~---~L~~L~l~~~~-----------------  196 (352)
                                         +......+.+.+++++-.++. ++.+....   -...++++.|.                 
T Consensus       337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~  416 (565)
T KOG0472|consen  337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTD  416 (565)
T ss_pred             CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHH
Confidence                               011223345566666555542 22222211   13444554443                 


Q ss_pred             -------ccee--cCCCCCCCCEEEcCCCcCCCCc-CccccccCcEEECCCCCCCCCCC-CCCCCCCcEEEcCCCcCCCc
Q 018662          197 -------IKVV--NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEG-LSTLVNLHVLDVSSNKLTLV  265 (352)
Q Consensus       197 -------l~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~  265 (352)
                             +...  .++.+++|+.|++++|.+.+.| .++.+..|+.++++.|++..+|. ...+..++.+..++|++..+
T Consensus       417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~v  496 (565)
T KOG0472|consen  417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSV  496 (565)
T ss_pred             HHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccccc
Confidence                   2222  4566788999999999988887 56677779999999998888774 34455677777788999887


Q ss_pred             --ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcc
Q 018662          266 --DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQN  312 (352)
Q Consensus       266 --~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~  312 (352)
                        +.+.++.+|..||+.+|.+..+|++    .++|.+|++|++.|||+-
T Consensus       497 d~~~l~nm~nL~tLDL~nNdlq~IPp~----LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  497 DPSGLKNMRNLTTLDLQNNDLQQIPPI----LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ChHHhhhhhhcceeccCCCchhhCChh----hccccceeEEEecCCccC
Confidence              4588999999999999999988864    577899999999999875

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=1.7e-19  Score=173.25  Aligned_cols=249  Identities=23%  Similarity=0.260  Sum_probs=161.7

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  104 (352)
                      +...|++++..++.+|. ..+++++.|++++|+++++|..+.  ++|++|++++|.++..    +..+  .+.|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsL----P~~l--~~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIPA-CIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSI----PATL--PDTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCCc-ccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccC----Chhh--hccccEEECc
Confidence            46788899888888875 457789999999999988887653  5899999999888763    1122  3468889998


Q ss_pred             CCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCC
Q 018662          105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL  184 (352)
Q Consensus       105 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  184 (352)
                      +|.+..+|.. ...+|+.|++++|.+..++...  ..+|+.|++++|.+..++.. ..++|+.|++.+|           
T Consensus       250 ~N~L~~LP~~-l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~N-----------  314 (754)
T PRK15370        250 INRITELPER-LPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTLPAH-LPSGITHLNVQSN-----------  314 (754)
T ss_pred             CCccCcCChh-HhCCCCEEECcCCccCcccccc--CCCCcEEECCCCccccCccc-chhhHHHHHhcCC-----------
Confidence            8888887751 1247888888888877655322  24677777777766543210 0123444444444           


Q ss_pred             CCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCC
Q 018662          185 TNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL  264 (352)
Q Consensus       185 ~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~  264 (352)
                                 .+........++|+.|++++|.++.+|.. -+++|+.|++++|++..++.. ..++|+.|++++|.++.
T Consensus       315 -----------~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~~-lp~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        315 -----------SLTALPETLPPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQITVLPET-LPPTITTLDVSRNALTN  381 (754)
T ss_pred             -----------ccccCCccccccceeccccCCccccCChh-hcCcccEEECCCCCCCcCChh-hcCCcCEEECCCCcCCC
Confidence                       44333222234566666666666655421 135677777777777665531 13567777777777766


Q ss_pred             cc-cccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcc
Q 018662          265 VD-DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQN  312 (352)
Q Consensus       265 ~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~  312 (352)
                      ++ .+.  ..|+.|++++|.++.+|+.+......++.+..|++.+||+.
T Consensus       382 LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        382 LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            52 221  35777777777777777665666666677777778777654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.82  E-value=1.8e-23  Score=178.62  Aligned_cols=259  Identities=25%  Similarity=0.330  Sum_probs=181.1

Q ss_pred             cCceeecCCCCCcCCC-CCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           25 SNTVLDLTSFQLHDLD-SVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~-~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      .+..+.+++|.++.+. .+..+..+++|.+.+|++..+|+++..+..++.+++++|.+..    .++..+.+..|+.+++
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~----lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE----LPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh----ccHHHhhhhhhhhhhc
Confidence            4566777777776653 3455667777777777777777777777777777777777766    3445566777777777


Q ss_pred             cCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCC-cccccCCCCCcEEEcCCCccC-Cccc
Q 018662          104 RDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSNRLR-VMEN  180 (352)
Q Consensus       104 ~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~  180 (352)
                      ++|.+..+++ +..+..+..++..+|++...++....+.++..+++.+|.+.. ++..-+++.|++++...|.++ .++.
T Consensus       122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~  201 (565)
T KOG0472|consen  122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPE  201 (565)
T ss_pred             cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChh
Confidence            7777777665 666777777777777777777766667777777777777666 333334777777777777665 4456


Q ss_pred             ccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcC--ccccccCcEEECCCCCCCCCCC-CCCCCCCcEEE
Q 018662          181 LQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKMEG-LSTLVNLHVLD  256 (352)
Q Consensus       181 ~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~  256 (352)
                      ++.+.+|+.|++..|++... .|.+|+.|..+.++.|++...|.  ..+++.+..|+++.|+++.+|. +..+++|.+||
T Consensus       202 lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLD  281 (565)
T KOG0472|consen  202 LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLD  281 (565)
T ss_pred             hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhc
Confidence            77777777777777777766 67777777777777777766652  3466777777777777777653 55566677777


Q ss_pred             cCCCcCCCc-ccccCCCCCCeEEcCCCCCcchH
Q 018662          257 VSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLE  288 (352)
Q Consensus       257 l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~  288 (352)
                      +++|.+++. ..++++ +|+.|-+.||++..+-
T Consensus       282 lSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  282 LSNNDISSLPYSLGNL-HLKFLALEGNPLRTIR  313 (565)
T ss_pred             ccCCccccCCcccccc-eeeehhhcCCchHHHH
Confidence            777777777 456666 7777777777766543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.81  E-value=1.5e-21  Score=182.42  Aligned_cols=285  Identities=26%  Similarity=0.282  Sum_probs=226.7

Q ss_pred             ccccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCC
Q 018662           18 QAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG   97 (352)
Q Consensus        18 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~   97 (352)
                      ......++++.|+.+.|.++.....+.+.++++++++++.++.+|..+..+.+|+.+.+.+|.++.    .+..+...+.
T Consensus       213 ~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~----lp~ri~~~~~  288 (1081)
T KOG0618|consen  213 ELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA----LPLRISRITS  288 (1081)
T ss_pred             eEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHh----hHHHHhhhhh
Confidence            344455778888888888887777788899999999999999999779999999999999999966    3445667889


Q ss_pred             CcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCccc--ccCcceEEccCCcCCCccccc--CCCCCcEEEcCC
Q 018662           98 LEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNV--TDTLKELYVSKNEVPKMEEIE--HFHDLQILEFGS  172 (352)
Q Consensus        98 L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~  172 (352)
                      |+.|.+..|.+..+|+ ....++|++|++..|.+..++.....  ...++.++.+.+.+......+  ..+.|+.|.+.+
T Consensus       289 L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  289 LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            9999999999999998 55599999999999999988764433  234777777777776654433  356688899999


Q ss_pred             CccC--CcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc-CccccccCcEEECCCCCCCCCCCC
Q 018662          173 NRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEGL  246 (352)
Q Consensus       173 ~~l~--~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~  246 (352)
                      |.+.  .++.+.+.++|+.|+++.|.+..+   .+..++.|+.|.+++|.++.+| .+..++.|++|....|++..+|.+
T Consensus       369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~  448 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPEL  448 (1081)
T ss_pred             CcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhh
Confidence            9885  456788889999999999977765   6677888999999999999886 467888999999999999998888


Q ss_pred             CCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCC
Q 018662          247 STLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN  309 (352)
Q Consensus       247 ~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n  309 (352)
                      ..++.|+.+|++.|.++..  +.....++|++||++||.-..++   ...+..+.++...++.-+
T Consensus       449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d---~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFD---HKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccc---hhhhHHhhhhhheecccC
Confidence            8889999999999998766  22222278999999999855443   334555666666666655

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.81  E-value=1.4e-21  Score=182.60  Aligned_cols=306  Identities=23%  Similarity=0.274  Sum_probs=180.1

Q ss_pred             ccccccccCceeecCCCCCcCCCC-CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCC
Q 018662           18 QAVEIDLSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA   96 (352)
Q Consensus        18 ~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~   96 (352)
                      .+++..-.|+.||++++.+..+|. +....+|+.|+++.|-+.++|....++++|+++.|.+|....    .+.++..+.
T Consensus        39 ~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~----lP~~~~~lk  114 (1081)
T KOG0618|consen   39 EFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQS----LPASISELK  114 (1081)
T ss_pred             HHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhc----CchhHHhhh
Confidence            333444458999999999999874 455688899999999888888888888889999998887766    455677788


Q ss_pred             CCcEEEccCCCCCCCCC-CccccCCcEEEccCC-------------------CcccccCCcccccCcce-EEccCCcCC-
Q 018662           97 GLEELILRDNKLMKIPD-VSIFKKLSVFDVSFN-------------------EITSSHGLSNVTDTLKE-LYVSKNEVP-  154 (352)
Q Consensus        97 ~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~-------------------~~~~~~~~~~~~~~L~~-L~l~~~~~~-  154 (352)
                      +|++|+++.|.+..+|. +..+..+..+..++|                   .+.....  .....+++ +++.+|.+. 
T Consensus       115 nl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~--~~i~~l~~~ldLr~N~~~~  192 (1081)
T KOG0618|consen  115 NLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFL--IDIYNLTHQLDLRYNEMEV  192 (1081)
T ss_pred             cccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchh--cchhhhheeeecccchhhh
Confidence            88888888888777664 333333333333322                   2111000  00111122 333333332 


Q ss_pred             ----------------------------------------CcccccCCCCCcEEEcCCCccC-CcccccCCCCCcEEEcc
Q 018662          155 ----------------------------------------KMEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQELWLG  193 (352)
Q Consensus       155 ----------------------------------------~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~L~~L~l~  193 (352)
                                                              .........++++++++.++++ .+.++..|.+|+.++..
T Consensus       193 ~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  193 LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNAN  272 (1081)
T ss_pred             hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEeccc
Confidence                                                    1111122345666666666654 33456667777777776


Q ss_pred             CCcccee--cCCCCCCCCEEEcCCCcCCCCcC-ccccccCcEEECCCCCCCCCCC-------------------------
Q 018662          194 RNRIKVV--NLCGLKCIKKISLQSNRLTSMKG-FEECIALEELYLSHNGISKMEG-------------------------  245 (352)
Q Consensus       194 ~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~-------------------------  245 (352)
                      .|.+...  .+...++|+++.+..|.+..+|. ..+...|++|++..|++..++.                         
T Consensus       273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~  352 (1081)
T KOG0618|consen  273 HNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS  352 (1081)
T ss_pred             chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence            6665444  33333444444444444444432 3335566666666666554321                         


Q ss_pred             C--CCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCc
Q 018662          246 L--STLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSD  321 (352)
Q Consensus       246 ~--~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  321 (352)
                      .  ...+.|+.|.+.+|.+++-  +.+.++.+|+.|++++|++..+|   +....++..|++|+|+||    .+..+|..
T Consensus       353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp---as~~~kle~LeeL~LSGN----kL~~Lp~t  425 (1081)
T KOG0618|consen  353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP---ASKLRKLEELEELNLSGN----KLTTLPDT  425 (1081)
T ss_pred             ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC---HHHHhchHHhHHHhcccc----hhhhhhHH
Confidence            1  1223456666667766654  56666777777777777777665   344556677777777777    45555632


Q ss_pred             cHHHHHHHHHHhhhhcc
Q 018662          322 KFSQIYSRLILMYFFRS  338 (352)
Q Consensus       322 ~~~~~~~~~~~~~~~~~  338 (352)
                       ... +.++..++.+.|
T Consensus       426 -va~-~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  426 -VAN-LGRLHTLRAHSN  440 (1081)
T ss_pred             -HHh-hhhhHHHhhcCC
Confidence             222 566666666666

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.80  E-value=1.2e-21  Score=167.17  Aligned_cols=289  Identities=24%  Similarity=0.303  Sum_probs=206.8

Q ss_pred             ceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccC
Q 018662           27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD  105 (352)
Q Consensus        27 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  105 (352)
                      ...+.++..++.+|. ..|+..++++|..|.|+.||+. |+.+++||.|+|++|.|..+.|   ..|..+++|..|-+.+
T Consensus        49 ~~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p---~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP---DAFKGLASLLSLVLYG  124 (498)
T ss_pred             ceEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcCh---HhhhhhHhhhHHHhhc
Confidence            456777788888775 7888999999999999999886 8999999999999999998844   4677778877776665


Q ss_pred             -CCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccC---
Q 018662          106 -NKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR---  176 (352)
Q Consensus       106 -~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~---  176 (352)
                       |+|+.+|.  +.++.+++.|.+.-|++..+.. .+..++++..|.+..|.+..+  ..+..+..++++.+..+.+-   
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence             89999887  8888888888887777765543 344477888888888877764  35777788888888777642   


Q ss_pred             Ccccc-----------cCCCCCcEEEccCCcccee----cCCCCCCCCEEEcCCCcCCC-Cc--CccccccCcEEECCCC
Q 018662          177 VMENL-----------QNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTS-MK--GFEECIALEELYLSHN  238 (352)
Q Consensus       177 ~~~~~-----------~~~~~L~~L~l~~~~l~~~----~~~~~~~L~~L~l~~~~~~~-~~--~~~~~~~L~~L~l~~n  238 (352)
                      ..++.           +...-.....+....+...    ..+....+.+--.+.+.... .|  .|..+++|+.+++++|
T Consensus       205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN  284 (498)
T ss_pred             ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence            11111           1111111111111222222    11111122111112222222 23  4778999999999999


Q ss_pred             CCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccc
Q 018662          239 GISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQ  314 (352)
Q Consensus       239 ~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  314 (352)
                      .++.+.  +|...+.++.|.+..|++..+  ..|..+..|+.|++.+|+|+.+.   ..++.....|.+|++-.|||.|+
T Consensus       285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~---~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA---PGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe---cccccccceeeeeehccCcccCc
Confidence            999985  688999999999999999888  67899999999999999999765   34567778999999999999999


Q ss_pred             ccccCCccHHH
Q 018662          315 IILLPSDKFSQ  325 (352)
Q Consensus       315 ~~~~~~~~~~~  325 (352)
                      +   .-.++..
T Consensus       362 C---~l~wl~~  369 (498)
T KOG4237|consen  362 C---RLAWLGE  369 (498)
T ss_pred             c---chHHHHH
Confidence            9   4444543

>PLN03210 Resistant to P

Probab=99.79  E-value=1.6e-17  Score=169.72  Aligned_cols=276  Identities=18%  Similarity=0.165  Sum_probs=206.8

Q ss_pred             cccCceeecCCCCCcCCCC-CCCCCcccEEEcCCCC-CCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662           23 DLSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANR-LTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (352)
Q Consensus        23 ~~~l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~-l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  100 (352)
                      +.+|+.|+++++.+..++. ...+++|++|+++++. +..+|. +..+++|++|++++|.....   .+..+..+++|+.
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~---lp~si~~L~~L~~  685 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVE---LPSSIQYLNKLED  685 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccc---cchhhhccCCCCE
Confidence            5789999999999998754 4567899999999875 567764 78899999999999854433   3345678999999


Q ss_pred             EEccCC-CCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc-
Q 018662          101 LILRDN-KLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM-  178 (352)
Q Consensus       101 L~l~~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-  178 (352)
                      |++++| .+..+|...++++|+.|++++|......+  ....+|++|+++++.+..++....+++|+.|.+.++..... 
T Consensus       686 L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p--~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~  763 (1153)
T PLN03210        686 LDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP--DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW  763 (1153)
T ss_pred             EeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc--cccCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence            999987 67788875578999999999986432221  22468999999999887755544677888888776432111 


Q ss_pred             --------ccccCCCCCcEEEccCCccce-e--cCCCCCCCCEEEcCCC-cCCCCcCccccccCcEEECCCCC-CCCCCC
Q 018662          179 --------ENLQNLTNLQELWLGRNRIKV-V--NLCGLKCIKKISLQSN-RLTSMKGFEECIALEELYLSHNG-ISKMEG  245 (352)
Q Consensus       179 --------~~~~~~~~L~~L~l~~~~l~~-~--~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~  245 (352)
                              .....+++|+.|++++|.... .  .+..+++|+.|++++| .+..+|....+++|+.|++++|. +..++.
T Consensus       764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence                    112335689999999875332 2  5778899999999987 56666654578899999999874 444544


Q ss_pred             CCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCC-CCcchHHHHHHHhccccCccEeeccCCC
Q 018662          246 LSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDN-QIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       246 ~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      .  ..+|+.|++++|.++.+ ..+..+++|+.|++++| .++.++..    ...+++|+.+++++|+
T Consensus       844 ~--~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~----~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        844 I--STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN----ISKLKHLETVDFSDCG  904 (1153)
T ss_pred             c--ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc----cccccCCCeeecCCCc
Confidence            3  36799999999999887 56788899999999985 46665532    3456888888888887

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=9.3e-17  Score=154.61  Aligned_cols=227  Identities=23%  Similarity=0.246  Sum_probs=153.2

Q ss_pred             ccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEE
Q 018662           22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL  101 (352)
Q Consensus        22 ~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  101 (352)
                      .++.++.|++++|+++.+|. ..+++|++|++++|.++++|..+.  ++|+.|++++|.+... |   ..+  .++|+.|
T Consensus       197 Ip~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~L-P---~~l--~s~L~~L  267 (754)
T PRK15370        197 IPEQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITEL-P---ERL--PSALQSL  267 (754)
T ss_pred             cccCCcEEEecCCCCCcCCh-hhccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcC-C---hhH--hCCCCEE
Confidence            35689999999999999886 445799999999999999987653  4899999999998863 2   222  3579999


Q ss_pred             EccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccc
Q 018662          102 ILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENL  181 (352)
Q Consensus       102 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  181 (352)
                      ++++|.+..+|. .-.++|+.|++++|.+..++...  ..+|+.|++++|.+..++. ...++|+.|++.+|.+..++. 
T Consensus       268 ~Ls~N~L~~LP~-~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~Lt~LP~-  342 (754)
T PRK15370        268 DLFHNKISCLPE-NLPEELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTALPE-TLPPGLKTLEAGENALTSLPA-  342 (754)
T ss_pred             ECcCCccCcccc-ccCCCCcEEECCCCccccCcccc--hhhHHHHHhcCCccccCCc-cccccceeccccCCccccCCh-
Confidence            999999998886 11358999999999998766432  3579999999998876432 123578888888877754432 


Q ss_pred             cCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCC-----CCCCCCCcEEE
Q 018662          182 QNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG-----LSTLVNLHVLD  256 (352)
Q Consensus       182 ~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~L~~L~  256 (352)
                      .-.++|+.|++++|.+........++|+.|++++|.++.+|.- -...|+.|++++|++..+|.     ....+.+..++
T Consensus       343 ~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~-l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~  421 (754)
T PRK15370        343 SLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPEN-LPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRII  421 (754)
T ss_pred             hhcCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHh-HHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEE
Confidence            1124666666666665543222234566666666665555421 11245556666665555432     12234455555


Q ss_pred             cCCCcCC
Q 018662          257 VSSNKLT  263 (352)
Q Consensus       257 l~~n~l~  263 (352)
                      +.+|.+.
T Consensus       422 L~~Npls  428 (754)
T PRK15370        422 VEYNPFS  428 (754)
T ss_pred             eeCCCcc
Confidence            5555553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=4.1e-17  Score=145.09  Aligned_cols=267  Identities=22%  Similarity=0.228  Sum_probs=142.2

Q ss_pred             eeecCCCCCcCCCCC---CCCCcccEEEcCCCCCC-----cchhhhhcCCCCcEEeccCCccCc--cccc-cccccccCC
Q 018662           28 VLDLTSFQLHDLDSV---EFPTNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDD--AAIE-PISRWDALA   96 (352)
Q Consensus        28 ~L~l~~~~l~~~~~~---~~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~--~~~~-~~~~~~~l~   96 (352)
                      .|++.++.+++-...   ...++|++|+++++.++     .++..+...+.+++++++++.+..  .... ....+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            355666666532221   12355778888888774     344455666777888877776552  1000 112344566


Q ss_pred             CCcEEEccCCCCCC-CCC-Cccc---cCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCC-CCCcEEEc
Q 018662           97 GLEELILRDNKLMK-IPD-VSIF---KKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF-HDLQILEF  170 (352)
Q Consensus        97 ~L~~L~l~~~~l~~-l~~-~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l  170 (352)
                      +|+.|++++|.+.. .+. +..+   ++|++|++++|.+........                 ...+..+ ++|+.+++
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l-----------------~~~l~~~~~~L~~L~L  144 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL-----------------AKGLKDLPPALEKLVL  144 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH-----------------HHHHHhCCCCceEEEc
Confidence            77777777776652 111 2222   336666666665542110000                 0112222 34444444


Q ss_pred             CCCccCC------cccccCCCCCcEEEccCCcccee-------cCCCCCCCCEEEcCCCcCCCC------cCccccccCc
Q 018662          171 GSNRLRV------MENLQNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALE  231 (352)
Q Consensus       171 ~~~~l~~------~~~~~~~~~L~~L~l~~~~l~~~-------~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~  231 (352)
                      .+|.+..      ...+..+++|++|++++|.+...       .+...++|+.|++++|.+...      ..+..+++|+
T Consensus       145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~  224 (319)
T cd00116         145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE  224 (319)
T ss_pred             CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence            4444331      11233444555555555544421       122335666666666655433      1244567777


Q ss_pred             EEECCCCCCCCC--CC----C-CCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchHHH-HHHHhcc
Q 018662          232 ELYLSHNGISKM--EG----L-STLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLESI-VEAVAGS  297 (352)
Q Consensus       232 ~L~l~~n~l~~~--~~----~-~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~  297 (352)
                      +|++++|.+++.  ..    + ...+.|++|++++|.+++.      ..+..+++|+++++++|.+++.+.. .......
T Consensus       225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~  304 (319)
T cd00116         225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE  304 (319)
T ss_pred             EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhh
Confidence            777777776641  11    1 1246788888888887632      3345557888888888888865322 2223333


Q ss_pred             c-cCccEeeccCCCc
Q 018662          298 R-ETLTTIYLENNPQ  311 (352)
Q Consensus       298 ~-~~L~~L~l~~n~~  311 (352)
                      . +.|+.+++.+|||
T Consensus       305 ~~~~~~~~~~~~~~~  319 (319)
T cd00116         305 PGNELESLWVKDDSF  319 (319)
T ss_pred             cCCchhhcccCCCCC
Confidence            4 6788888888864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.64  E-value=1.2e-16  Score=141.97  Aligned_cols=252  Identities=24%  Similarity=0.287  Sum_probs=153.9

Q ss_pred             CccccccccccCceeecCCCCCcCC-----C-CCCCCCcccEEEcCCCCCCc-------chhhhhcCCCCcEEeccCCcc
Q 018662           15 NPDQAVEIDLSNTVLDLTSFQLHDL-----D-SVEFPTNLTELDLTANRLTS-------LDSRISHLSNLKKLSLRQNLI   81 (352)
Q Consensus        15 ~~~~~~~~~~~l~~L~l~~~~l~~~-----~-~~~~~~~L~~L~l~~~~l~~-------l~~~~~~l~~L~~L~l~~~~~   81 (352)
                      +....+.....++.++++++.++..     . .+...+.+++++++++.+..       ++..+..+++|++|+++++.+
T Consensus        14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~   93 (319)
T cd00116          14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL   93 (319)
T ss_pred             chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence            4456666667799999999998542     2 13345679999999987763       334567889999999999988


Q ss_pred             CccccccccccccCCCCcEEEccCCCCCC-----CCC-Cccc-cCCcEEEccCCCccccc-----CCcccccCcceEEcc
Q 018662           82 DDAAIEPISRWDALAGLEELILRDNKLMK-----IPD-VSIF-KKLSVFDVSFNEITSSH-----GLSNVTDTLKELYVS  149 (352)
Q Consensus        82 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----l~~-~~~~-~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~  149 (352)
                      ....+..+..+...++|++|++++|.+..     +.. +..+ ++|+.|++++|.+....     .....+.+|++|+++
T Consensus        94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~  173 (319)
T cd00116          94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA  173 (319)
T ss_pred             ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence            75432222222111459999999998773     111 3445 78888888888876311     111223456666666


Q ss_pred             CCcCCCc--ccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-------cCCCCCCCCEEEcCCCcCCC
Q 018662          150 KNEVPKM--EEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTS  220 (352)
Q Consensus       150 ~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-------~~~~~~~L~~L~l~~~~~~~  220 (352)
                      +|.+...  ..                  ....+...++|+.|++++|.+...       .+..+++|+.|++++|.+++
T Consensus       174 ~n~l~~~~~~~------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         174 NNGIGDAGIRA------------------LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             CCCCchHHHHH------------------HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            6555431  00                  001122334445555554444322       23445667777777766654


Q ss_pred             Cc--Ccc-----ccccCcEEECCCCCCCCC------CCCCCCCCCcEEEcCCCcCCCc------ccccCC-CCCCeEEcC
Q 018662          221 MK--GFE-----ECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV------DDIQNL-SRLEDLWLN  280 (352)
Q Consensus       221 ~~--~~~-----~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~-~~L~~L~l~  280 (352)
                      ..  .+.     ..+.|++|++++|.+++.      ..+...++|+++++++|.++..      ..+... +.|+++++.
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            21  111     236788888888877631      2234457788888888888754      234444 678888888


Q ss_pred             CCCC
Q 018662          281 DNQI  284 (352)
Q Consensus       281 ~n~i  284 (352)
                      +|++
T Consensus       316 ~~~~  319 (319)
T cd00116         316 DDSF  319 (319)
T ss_pred             CCCC
Confidence            7763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.64  E-value=3.5e-18  Score=146.10  Aligned_cols=129  Identities=23%  Similarity=0.306  Sum_probs=105.2

Q ss_pred             cccccCceeecCCCCCcCCCCCCC--CCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccC-CccCccccccccccccCC
Q 018662           21 EIDLSNTVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALA   96 (352)
Q Consensus        21 ~~~~~l~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~   96 (352)
                      ++|+....+++..|.|+.+|+..|  .++|++|+|++|.|+.|- ..|.+++.|.+|-+.+ |+|++.   +-..|..+.
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l---~k~~F~gL~  140 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL---PKGAFGGLS  140 (498)
T ss_pred             cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh---hhhHhhhHH
Confidence            456678999999999999998655  589999999999999885 4599999988887777 899986   455677888


Q ss_pred             CCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCc
Q 018662           97 GLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNE  152 (352)
Q Consensus        97 ~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~  152 (352)
                      .|+.|.+.-|.+..++.  +..++++..|.+.+|.+..+.. .+..+..++.+++..|.
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            89999998888887664  7889999999999998887654 33446777888777665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.52  E-value=2.6e-16  Score=120.07  Aligned_cols=158  Identities=30%  Similarity=0.449  Sum_probs=124.3

Q ss_pred             CCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-Cccc
Q 018662           39 LDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIF  117 (352)
Q Consensus        39 ~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~  117 (352)
                      ++.+.-.+++++|-+++|+++.+|+.+..+.+|+.|++++|++..    .+.++..+++|+.|++.-|.+..+|. ++.+
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~----lp~~issl~klr~lnvgmnrl~~lprgfgs~  101 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE----LPTSISSLPKLRILNVGMNRLNILPRGFGSF  101 (264)
T ss_pred             cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh----cChhhhhchhhhheecchhhhhcCccccCCC
Confidence            344455688899999999999999999999999999999999887    45567788999999998888888887 8889


Q ss_pred             cCCcEEEccCCCccc--ccCCcccccCcceEEccCCcCCC-cccccCCCCCcEEEcCCCcc-CCcccccCCCCCcEEEcc
Q 018662          118 KKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSNRL-RVMENLQNLTNLQELWLG  193 (352)
Q Consensus       118 ~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~L~~L~l~  193 (352)
                      |.|+.||+++|.+..  ++.-++.+..|+.|+++.|.+.- +..++++++|+.+.+..|.+ +.+..++.++.|++|.+.
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence            999999999888764  44555557788888888888776 46788888888888877765 455667777777777777


Q ss_pred             CCcccee
Q 018662          194 RNRIKVV  200 (352)
Q Consensus       194 ~~~l~~~  200 (352)
                      +|.+.-.
T Consensus       182 gnrl~vl  188 (264)
T KOG0617|consen  182 GNRLTVL  188 (264)
T ss_pred             cceeeec
Confidence            7766543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.46  E-value=1.5e-14  Score=120.11  Aligned_cols=197  Identities=22%  Similarity=0.271  Sum_probs=123.9

Q ss_pred             CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccC---CcccccCCCCCcEE
Q 018662          114 VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR---VMENLQNLTNLQEL  190 (352)
Q Consensus       114 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~L~~L  190 (352)
                      +..+++|+.+.++.+.-..+......-+.|+++.+....++..+.+-....+.-.....-...   ....+...+.|+++
T Consensus       210 l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel  289 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTEL  289 (490)
T ss_pred             hHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence            344567777777777655555544455677777777665555433333332222222211111   11223344566777


Q ss_pred             EccCCcccee--cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCC-CCCCCCcEEEcCCCcCCCccc
Q 018662          191 WLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL-STLVNLHVLDVSSNKLTLVDD  267 (352)
Q Consensus       191 ~l~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~L~~L~l~~n~l~~~~~  267 (352)
                      ++++|.+..+  +..-.|.++.|+++.|.+..+..+..+++|+.|++++|.++.+.++ ..+-++++|.+++|.+..++.
T Consensus       290 DLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG  369 (490)
T KOG1259|consen  290 DLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSG  369 (490)
T ss_pred             cccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhh
Confidence            7777777666  5566777777777777777776677777777777777777776543 356677777777777777766


Q ss_pred             ccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcc
Q 018662          268 IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQN  312 (352)
Q Consensus       268 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~  312 (352)
                      +..+-+|..||+++|+|..+++.  ...+++|.|.++.+.+||+.
T Consensus       370 L~KLYSLvnLDl~~N~Ie~ldeV--~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  370 LRKLYSLVNLDLSSNQIEELDEV--NHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hHhhhhheeccccccchhhHHHh--cccccccHHHHHhhcCCCcc
Confidence            77777777777777777766542  23466777777777777654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.45  E-value=1.4e-15  Score=116.23  Aligned_cols=151  Identities=24%  Similarity=0.270  Sum_probs=135.1

Q ss_pred             ccCceeecCCCCCcCCCC-CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           24 LSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      ...+.|.++.++++..++ +.-+.+|+.|++.+|+++++|.+++.+++|+.|+++-|++..    .+.+|+.++-|+.||
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~----lprgfgs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI----LPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc----CccccCCCchhhhhh
Confidence            456888999999998865 567899999999999999999999999999999999998776    466888999999999


Q ss_pred             ccCCCCC--CCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCC-cccccCCCCCcEEEcCCCccCCc
Q 018662          103 LRDNKLM--KIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSNRLRVM  178 (352)
Q Consensus       103 l~~~~l~--~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~  178 (352)
                      +.+|++.  .+|. +..+..|+.|++++|.+.-+++..+.+.+|+.|.+..|.+.+ +..++.+..|+++.+.+|++..+
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence            9999887  5776 888999999999999999999888889999999999998777 56799999999999999998743

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.43  E-value=8.9e-14  Score=110.20  Aligned_cols=125  Identities=30%  Similarity=0.376  Sum_probs=31.5

Q ss_pred             ccCCCCCcEEEccCCcccee-cCC-CCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC-CC-CCCCCCcEEE
Q 018662          181 LQNLTNLQELWLGRNRIKVV-NLC-GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME-GL-STLVNLHVLD  256 (352)
Q Consensus       181 ~~~~~~L~~L~l~~~~l~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~-~~~~~L~~L~  256 (352)
                      +.++..+++|++.++.+... .+. .+.+|+.|++++|.++.++.+..++.|+.|++++|.++.+. .+ ..+++|++|.
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            33344445555555544444 222 23445555555555555544445555555555555555443 12 1344555555


Q ss_pred             cCCCcCCCc---ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEee
Q 018662          257 VSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY  305 (352)
Q Consensus       257 l~~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~  305 (352)
                      +++|+|.++   ..+..+++|+.|++.+|+++..+..-..+...+|+|+.||
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            555555443   3334445555555555555544333333334445555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.40  E-value=2e-13  Score=108.18  Aligned_cols=132  Identities=30%  Similarity=0.471  Sum_probs=57.1

Q ss_pred             cCCCCCCCCEEEcCCCcCCCCcCcc-ccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCc-ccc-cCCCCCCeE
Q 018662          201 NLCGLKCIKKISLQSNRLTSMKGFE-ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV-DDI-QNLSRLEDL  277 (352)
Q Consensus       201 ~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~~-~~~~~L~~L  277 (352)
                      ....+..++.|++.+|.++.+..++ .+.+|+.|++++|.++.++++..++.|+.|++++|+++.+ +.+ ..+++|++|
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            4455668899999999999998776 5789999999999999999999999999999999999998 444 468999999


Q ss_pred             EcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceecee
Q 018662          278 WLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFS  345 (352)
Q Consensus       278 ~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (352)
                      ++++|+|.++.+.  ..+..+++|+.|++.|||+...    +       -.|...++.++.+.++|..
T Consensus        94 ~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~----~-------~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEK----K-------NYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGS----T-------THHHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCCChHHh--HHHHcCCCcceeeccCCcccch----h-------hHHHHHHHHcChhheeCCE
Confidence            9999999987653  3456789999999999986422    2       3456677778888887654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.34  E-value=1.3e-13  Score=126.65  Aligned_cols=265  Identities=40%  Similarity=0.588  Sum_probs=174.3

Q ss_pred             CCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcEE
Q 018662           45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF  123 (352)
Q Consensus        45 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L  123 (352)
                      ++.++.++...+.+.........+..++.+.+..+.+..    ....+..+++|+.|++.+|.+..+.. +..+++|++|
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L  123 (414)
T KOG0531|consen   48 PSDLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAK----ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVL  123 (414)
T ss_pred             cchhhhhcchhccccchhhhHHHhHhHHhhccchhhhhh----hhcccccccceeeeeccccchhhcccchhhhhcchhe
Confidence            345555555555433221111345566666666666655    12234556777777777777777776 6777777777


Q ss_pred             EccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCccc--ccCCCCCcEEEccCCcccee-
Q 018662          124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVV-  200 (352)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~~-  200 (352)
                      ++++|.+..+.+... +..|+.|++.+|.+..+..+..+..|+.+++++|.+..+..  ...+.+++.+++.+|.+... 
T Consensus       124 ~ls~N~I~~i~~l~~-l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~  202 (414)
T KOG0531|consen  124 DLSFNKITKLEGLST-LTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE  202 (414)
T ss_pred             eccccccccccchhh-ccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc
Confidence            777777776654333 34477777777777777777777778888888777766655  47777777777777777666 


Q ss_pred             cCCCCCCCCEEEcCCCcCCCCcCcccccc--CcEEECCCCCCCCC-CCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeE
Q 018662          201 NLCGLKCIKKISLQSNRLTSMKGFEECIA--LEELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDL  277 (352)
Q Consensus       201 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L  277 (352)
                      .......+..+++..|.+.....+...+.  |+.+++.+|++..+ ..+..+..+..+++..|++.....+...+.+..+
T Consensus       203 ~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~  282 (414)
T KOG0531|consen  203 GLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSEL  282 (414)
T ss_pred             chHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHh
Confidence            45555555556777777766654444444  78888888888777 6677777788888888888777667777777778


Q ss_pred             EcCCCCCcchHHHHHHH-hccccCccEeeccCCCcccc
Q 018662          278 WLNDNQIESLESIVEAV-AGSRETLTTIYLENNPQNLQ  314 (352)
Q Consensus       278 ~l~~n~i~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~  314 (352)
                      ....+.+.......... ...-+.++.+.+.+||....
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  283 WLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             ccCcchhcchhhhhccccccccccccccccccCccccc
Confidence            88887766432222221 34457777888888875443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.25  E-value=7.4e-13  Score=121.57  Aligned_cols=235  Identities=32%  Similarity=0.399  Sum_probs=125.2

Q ss_pred             CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccc-cccCCCCcEEEccCCCCCCCCCCccccCCcEEE
Q 018662           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISR-WDALAGLEELILRDNKLMKIPDVSIFKKLSVFD  124 (352)
Q Consensus        46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~  124 (352)
                      ..+..+.++.+.+.++...+..+++|+.|++.+|.+..+     .. +..+++|++|++++|.|..+..+..++.|+.|+
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-----~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-----ENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-----ccchhhhhcchheeccccccccccchhhccchhhhe
Confidence            444444455555554433445555555555555555542     12 334555555555555555555555555555555


Q ss_pred             ccCCCcccccCCcccccCcceEEccCCcCCCccc--ccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-c
Q 018662          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-N  201 (352)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~  201 (352)
                      +++|.+..+..... +..|+.+++++|.+.....  ...+.+++.+++.++.+..+.++.....+..+.+..+.+... .
T Consensus       147 l~~N~i~~~~~~~~-l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~  225 (414)
T KOG0531|consen  147 LSGNLISDISGLES-LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG  225 (414)
T ss_pred             eccCcchhccCCcc-chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC
Confidence            55555554433222 4555555555555555444  355555666666666555554444444444445555555444 2


Q ss_pred             CCCCCC--CCEEEcCCCcCCCC-cCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCc------ccccCCC
Q 018662          202 LCGLKC--IKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV------DDIQNLS  272 (352)
Q Consensus       202 ~~~~~~--L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~  272 (352)
                      ......  |+.+.+.++.+... ..+..+..+..+++..+.+..+..+.....+..+....+.+...      ......+
T Consensus       226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (414)
T KOG0531|consen  226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAP  305 (414)
T ss_pred             cccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhccccccccc
Confidence            233333  56666666666555 44555666666666666666665555555556666666655422      1134455


Q ss_pred             CCCeEEcCCCCCcc
Q 018662          273 RLEDLWLNDNQIES  286 (352)
Q Consensus       273 ~L~~L~l~~n~i~~  286 (352)
                      .+..+.+.+|.+..
T Consensus       306 ~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  306 TLVTLTLELNPIRK  319 (414)
T ss_pred             cccccccccCcccc
Confidence            66666666666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.25  E-value=1.8e-12  Score=107.86  Aligned_cols=130  Identities=28%  Similarity=0.403  Sum_probs=103.8

Q ss_pred             CCCCCcEEEcCCCccCCcc-cccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCc-CccccccCcEEECCC
Q 018662          161 HFHDLQILEFGSNRLRVME-NLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSH  237 (352)
Q Consensus       161 ~~~~L~~L~l~~~~l~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~  237 (352)
                      -...|+++++++|.++.++ ++.-.|.++.|+++.|.+..+ .+..+++|+.|++++|.++... +-..+-+++.|.+++
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            3455777788887776553 456677888888888887776 6777888888888888887774 334677888999999


Q ss_pred             CCCCCCCCCCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEEcCCCCCcchHHH
Q 018662          238 NGISKMEGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESI  290 (352)
Q Consensus       238 n~l~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~  290 (352)
                      |.+.++.+++.+-+|..||+++|+|..+   ..++.+|.|+.+.+.+|++..+++.
T Consensus       362 N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  362 NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            9999999899999999999999998776   6788899999999999998877643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.22  E-value=2e-12  Score=109.68  Aligned_cols=231  Identities=23%  Similarity=0.271  Sum_probs=99.9

Q ss_pred             CcccEEEcCCCCCC-----cchhhhhcCCCCcEEeccCCccCc---cccccc----cccccCCCCcEEEccCCCCC--CC
Q 018662           46 TNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDD---AAIEPI----SRWDALAGLEELILRDNKLM--KI  111 (352)
Q Consensus        46 ~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~---~~~~~~----~~~~~l~~L~~L~l~~~~l~--~l  111 (352)
                      ..++++++++|.+.     .+...+.+.++|+..+++.--...   ..|+.+    ..+..+++|++|+|+.|.+.  .+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            56677777777665     244445666667766666532111   111111    11233445555555555443  12


Q ss_pred             CC----CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc------ccc
Q 018662          112 PD----VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM------ENL  181 (352)
Q Consensus       112 ~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~~  181 (352)
                      +.    ++++..|++|.+.+|.+........ -..|.++..       ....+..++|+.+...+|++..-      ..+
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l-~~al~~l~~-------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRL-GRALFELAV-------NKKAASKPKLRVFICGRNRLENGGATALAEAF  181 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHH-HHHHHHHHH-------HhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence            21    3334445555555554432111000 000111110       01123344555555555554311      123


Q ss_pred             cCCCCCcEEEccCCcccee-------cCCCCCCCCEEEcCCCcCCCC------cCccccccCcEEECCCCCCCCC-----
Q 018662          182 QNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM-----  243 (352)
Q Consensus       182 ~~~~~L~~L~l~~~~l~~~-------~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~l~~~-----  243 (352)
                      ..++.|+.+.+..|.+...       .+..++.|+.|++.+|.++..      ..+..++.|+.+++++|.+..-     
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence            4445555555555544432       344455555555555544332      1233445555555555555431     


Q ss_pred             -CC-CCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCC
Q 018662          244 -EG-LSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQI  284 (352)
Q Consensus       244 -~~-~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i  284 (352)
                       .. -...++|+.+.+.+|.++.-      ..+...+.|+.|++++|++
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence             00 12244555555555555321      1223344555555555555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.7e-12  Score=113.07  Aligned_cols=38  Identities=37%  Similarity=0.392  Sum_probs=20.7

Q ss_pred             ccccCcEEECCCCCCCCCCC---CCCCCCCcEEEcCCCcCC
Q 018662          226 ECIALEELYLSHNGISKMEG---LSTLVNLHVLDVSSNKLT  263 (352)
Q Consensus       226 ~~~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~  263 (352)
                      ..++|++|++..|++.+.++   +...++|+.|.+..|++.
T Consensus       299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            35566666666666655433   334455555666555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=2.6e-12  Score=111.91  Aligned_cols=192  Identities=21%  Similarity=0.271  Sum_probs=108.4

Q ss_pred             CCCCcEEEccCCCCCCCC---CCccccCCcEEEccCCCcccccC---CcccccCcceEEccCCcCCCcc---cccCCCCC
Q 018662           95 LAGLEELILRDNKLMKIP---DVSIFKKLSVFDVSFNEITSSHG---LSNVTDTLKELYVSKNEVPKME---EIEHFHDL  165 (352)
Q Consensus        95 l~~L~~L~l~~~~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L  165 (352)
                      +.+|+.+.+.++.+...+   ....+++++.||++.|-+....+   +...+++|+.|+++.|.+..+.   .-..++.+
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            344444444444433222   13334444444554444333221   1122444455555444443321   11244566


Q ss_pred             cEEEcCCCccCC---cccccCCCCCcEEEccCCc-ccee--cCCCCCCCCEEEcCCCcCCCCc---CccccccCcEEECC
Q 018662          166 QILEFGSNRLRV---MENLQNLTNLQELWLGRNR-IKVV--NLCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLS  236 (352)
Q Consensus       166 ~~L~l~~~~l~~---~~~~~~~~~L~~L~l~~~~-l~~~--~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~  236 (352)
                      +.|.+++|+++.   ...+..+|.++.|++..|. +...  ....++.|+.|++++|++...+   ....+|.|+.|+++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            667777776651   1224567777777777773 2222  4455677888888888776664   35677888888888


Q ss_pred             CCCCCCCCC--------CCCCCCCcEEEcCCCcCCCccc---ccCCCCCCeEEcCCCCCcc
Q 018662          237 HNGISKMEG--------LSTLVNLHVLDVSSNKLTLVDD---IQNLSRLEDLWLNDNQIES  286 (352)
Q Consensus       237 ~n~l~~~~~--------~~~~~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~i~~  286 (352)
                      .+++.++..        ....++|++|+++.|++..+..   +..+++|+.+.+.+|.+..
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            888776532        2456778888888888876633   3445667777777777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=3.5e-11  Score=110.18  Aligned_cols=190  Identities=31%  Similarity=0.426  Sum_probs=120.2

Q ss_pred             EEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCC-CCcEEEccCCCCCCCC-CCccccCCcEEEccC
Q 018662           50 ELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA-GLEELILRDNKLMKIP-DVSIFKKLSVFDVSF  127 (352)
Q Consensus        50 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~l~-~~~~~~~L~~L~l~~  127 (352)
                      .+....+.+..-...+...+.++.|++.++.++...+    ...... +|+.|++++|.+..+| .+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~----~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP----LIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCcc----ccccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence            4566666554333334455667777777776666422    122232 6777777777777664 366677777777777


Q ss_pred             CCcccccCCcccccCcceEEccCCcCCCcccc-cCCCCCcEEEcCCC-ccCCcccccCCCCCcEEEccCCccce--ecCC
Q 018662          128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEI-EHFHDLQILEFGSN-RLRVMENLQNLTNLQELWLGRNRIKV--VNLC  203 (352)
Q Consensus       128 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~-~l~~~~~~~~~~~L~~L~l~~~~l~~--~~~~  203 (352)
                      |++..++......+.|+.|++++|.+..++.. .....|+++.+.+| .+..+..+..+..+..+.+.++.+..  ..+.
T Consensus       173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  252 (394)
T COG4886         173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG  252 (394)
T ss_pred             chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhc
Confidence            77766665544556677777777776665443 34445777777776 34455556666666666666666665  3666


Q ss_pred             CCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCC
Q 018662          204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM  243 (352)
Q Consensus       204 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  243 (352)
                      .+++++++++++|.+..++.+....+++.++++++.+..+
T Consensus       253 ~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         253 NLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cccccceeccccccccccccccccCccCEEeccCcccccc
Confidence            6677777777777777776666777777777777766553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=6.7e-11  Score=108.37  Aligned_cols=168  Identities=27%  Similarity=0.411  Sum_probs=78.0

Q ss_pred             cCCcEEEccCCCcccccCCccccc-CcceEEccCCcCCCc-ccccCCCCCcEEEcCCCccCCccccc-CCCCCcEEEccC
Q 018662          118 KKLSVFDVSFNEITSSHGLSNVTD-TLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVMENLQ-NLTNLQELWLGR  194 (352)
Q Consensus       118 ~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~L~~L~l~~  194 (352)
                      +.++.+++.++.+..+.+...... +|+.|+++.|.+... ..++.++.|+.|++..|++..++... ..+.|+.+++++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence            444444444444444444333332 444444444444443 24444555555555555544333332 444555555555


Q ss_pred             CccceecC--CCCCCCCEEEcCCCcC-CCCcCccccccCcEEECCCCCCCC-CCCCCCCCCCcEEEcCCCcCCCcccccC
Q 018662          195 NRIKVVNL--CGLKCIKKISLQSNRL-TSMKGFEECIALEELYLSHNGISK-MEGLSTLVNLHVLDVSSNKLTLVDDIQN  270 (352)
Q Consensus       195 ~~l~~~~~--~~~~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~  270 (352)
                      |.+.....  .....|+.+.+++|.. .....+....++..+.+..|++.. ...+..+++++.|++++|.++.++.+..
T Consensus       196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~  275 (394)
T COG4886         196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGS  275 (394)
T ss_pred             CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccccccc
Confidence            55444421  2333355555555522 222234444445555555554444 2334444445555555555555544445


Q ss_pred             CCCCCeEEcCCCCCc
Q 018662          271 LSRLEDLWLNDNQIE  285 (352)
Q Consensus       271 ~~~L~~L~l~~n~i~  285 (352)
                      ..+++.+++++|.+.
T Consensus       276 ~~~l~~L~~s~n~~~  290 (394)
T COG4886         276 LTNLRELDLSGNSLS  290 (394)
T ss_pred             cCccCEEeccCcccc
Confidence            555555555555444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.12  E-value=1.1e-11  Score=105.12  Aligned_cols=240  Identities=23%  Similarity=0.266  Sum_probs=152.7

Q ss_pred             hhcCCCCcEEeccCCccCcccccccc-ccccCCCCcEEEccCCCCC----CCCC--------CccccCCcEEEccCCCcc
Q 018662           65 ISHLSNLKKLSLRQNLIDDAAIEPIS-RWDALAGLEELILRDNKLM----KIPD--------VSIFKKLSVFDVSFNEIT  131 (352)
Q Consensus        65 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~----~l~~--------~~~~~~L~~L~l~~~~~~  131 (352)
                      +..+..++++++++|.+..-....+. .+.+.++|+..++++--..    .+|.        +..+|+|+++++|+|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            45667888888888877664333322 2345567777776642111    2221        344556777777777654


Q ss_pred             cc-----cCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee------
Q 018662          132 SS-----HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV------  200 (352)
Q Consensus       132 ~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~------  200 (352)
                      .-     ......+..|++|++.+|.+.....-.--..|..+.       .....+..+.|+.+...+|.+...      
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~-------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A  178 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA-------VNKKAASKPKLRVFICGRNRLENGGATALA  178 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH-------HHhccCCCcceEEEEeeccccccccHHHHH
Confidence            31     112222455555555555544311000000011111       012245667899999999987765      


Q ss_pred             -cCCCCCCCCEEEcCCCcCCCC------cCccccccCcEEECCCCCCCCC------CCCCCCCCCcEEEcCCCcCCCc--
Q 018662          201 -NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV--  265 (352)
Q Consensus       201 -~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~--  265 (352)
                       .+...+.|+.+.+..|.+..-      ..+..|++|+.|++++|.++.-      ..++.+++|+.|++++|.++.-  
T Consensus       179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga  258 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA  258 (382)
T ss_pred             HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence             567779999999999977543      2477899999999999988752      2467788999999999998754  


Q ss_pred             ----ccc-cCCCCCCeEEcCCCCCcchHHH-HHHHhccccCccEeeccCCCc
Q 018662          266 ----DDI-QNLSRLEDLWLNDNQIESLESI-VEAVAGSRETLTTIYLENNPQ  311 (352)
Q Consensus       266 ----~~~-~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~~~~L~~L~l~~n~~  311 (352)
                          ..+ ...|+|+.+.+.+|.|+.-... +.......|.|..|+|++|.+
T Consensus       259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                112 3478999999999999863321 222233369999999999987

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.00  E-value=2.1e-11  Score=109.73  Aligned_cols=218  Identities=25%  Similarity=0.260  Sum_probs=164.6

Q ss_pred             CccccccccccCceeecCCCCCcCCCCCCC---CCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccc
Q 018662           15 NPDQAVEIDLSNTVLDLTSFQLHDLDSVEF---PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISR   91 (352)
Q Consensus        15 ~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~---~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~   91 (352)
                      ..++.++...---.|.|++.+++.+|....   ...-...+++.|++.++|..+..|..|+.+.+..|.+..+    +..
T Consensus        41 sl~r~leeA~~sg~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~i----p~~  116 (722)
T KOG0532|consen   41 SLERALEEAEYSGRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTI----PEA  116 (722)
T ss_pred             hhhHHHHHHhhhcccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceec----chh
Confidence            344444444455677888888888765332   3456678899999999998888888999999999888773    445


Q ss_pred             cccCCCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc-ccccCCCCCcEEE
Q 018662           92 WDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILE  169 (352)
Q Consensus        92 ~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~  169 (352)
                      ..++..|++++++.|++..+|. +..++ |+.|-+++|++..++...+...+|..|+++.|.+.++ ..++.+.+|+.+.
T Consensus       117 i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  117 ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN  195 (722)
T ss_pred             hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence            6678889999999999998887 54454 8888999999988887666778899999999988884 5588888888888


Q ss_pred             cCCCccC-CcccccCCCCCcEEEccCCcccee--cCCCCCCCCEEEcCCCcCCCCcC----ccccccCcEEECCCC
Q 018662          170 FGSNRLR-VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKG----FEECIALEELYLSHN  238 (352)
Q Consensus       170 l~~~~l~-~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~n  238 (352)
                      +..|++. .++.+..+ .|..|+++.|++...  .|..+..|++|.+.+|.+.+-|.    .+...-.++|+..-|
T Consensus       196 vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  196 VRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             HhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            8888875 44556644 488899999988887  77788999999999998887652    122333455555555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.88  E-value=2.1e-09  Score=105.93  Aligned_cols=146  Identities=21%  Similarity=0.242  Sum_probs=106.4

Q ss_pred             ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCC--CCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANR--LTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~--l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  100 (352)
                      ...+.+.+-++.+..++....++.|++|-+..+.  +..++.. |..+|.|+.|++++|.--..   .+..++.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~---LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK---LPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc---CChHHhhhhhhhc
Confidence            4568888888888877766677789999999996  6666665 77899999999998643332   3445567889999


Q ss_pred             EEccCCCCCCCCC-CccccCCcEEEccCCCccccc-CCcccccCcceEEccCCcCCC----cccccCCCCCcEEEcCC
Q 018662          101 LILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSH-GLSNVTDTLKELYVSKNEVPK----MEEIEHFHDLQILEFGS  172 (352)
Q Consensus       101 L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~  172 (352)
                      |+++++.+..+|. +.+++.|.+|++..+...... .....+.+|++|.+.......    ...+.++.+|+.+....
T Consensus       600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            9999999999998 888999999999987654333 344448889999887665221    23345555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.86  E-value=5e-11  Score=110.20  Aligned_cols=170  Identities=24%  Similarity=0.318  Sum_probs=122.6

Q ss_pred             ccCcceEEccCCcCCCcccccCC-CCCcEEEcCCCccCC--------cccccC---CCCCcEEEccCCcccee--cCCCC
Q 018662          140 TDTLKELYVSKNEVPKMEEIEHF-HDLQILEFGSNRLRV--------MENLQN---LTNLQELWLGRNRIKVV--NLCGL  205 (352)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~--------~~~~~~---~~~L~~L~l~~~~l~~~--~~~~~  205 (352)
                      ..+|+.|.+.++.+.....+..+ ..|++|.-.+ .+..        ...+.+   ...|...+++.|.+..+  .+.-+
T Consensus       108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll  186 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLL  186 (1096)
T ss_pred             ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHH
Confidence            56788888888887764333222 2344443222 1110        111111   12455666677766655  66778


Q ss_pred             CCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCC--CCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCC
Q 018662          206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS--TLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQ  283 (352)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~  283 (352)
                      +.++.|+++.|+++.+..+..++.|++||+++|.+..++-++  .+ +|+.|.+++|.++.+..+.++.+|+.||++.|-
T Consensus       187 ~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLRGIENLKSLYGLDLSYNL  265 (1096)
T ss_pred             HHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhhhHHhhhhhhccchhHhh
Confidence            899999999999999988889999999999999999887654  33 399999999999999889999999999999999


Q ss_pred             CcchHHHHHHHhccccCccEeeccCCCccc
Q 018662          284 IESLESIVEAVAGSRETLTTIYLENNPQNL  313 (352)
Q Consensus       284 i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  313 (352)
                      |....+.  ..+..+..|+.|+|.|||+-|
T Consensus       266 l~~hseL--~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  266 LSEHSEL--EPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhcchhh--hHHHHHHHHHHHhhcCCcccc
Confidence            8875432  334556889999999998543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.84  E-value=4.1e-11  Score=110.72  Aligned_cols=127  Identities=32%  Similarity=0.435  Sum_probs=105.8

Q ss_pred             CCCcEEEcCCCccCCcc-cccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCcc--ccccCcEEECCCC
Q 018662          163 HDLQILEFGSNRLRVME-NLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFE--ECIALEELYLSHN  238 (352)
Q Consensus       163 ~~L~~L~l~~~~l~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~n  238 (352)
                      .+|.+.+.+.|.+..++ ++.-+++++.|++++|++... .+..++.|++||+++|.+..+|.++  .|. |+.|.+++|
T Consensus       164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN  242 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence            34666777777776553 467788999999999999888 7788999999999999999988654  444 999999999


Q ss_pred             CCCCCCCCCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEEcCCCCCcchHHH
Q 018662          239 GISKMEGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESI  290 (352)
Q Consensus       239 ~l~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~  290 (352)
                      .++++-++.++.+|+.||+++|-+.+-   ..++.+..|+.|++.||++-.-|..
T Consensus       243 ~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~h  297 (1096)
T KOG1859|consen  243 ALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWH  297 (1096)
T ss_pred             HHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHH
Confidence            999998888999999999999988765   6677888999999999998876643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.79  E-value=2.1e-10  Score=103.44  Aligned_cols=169  Identities=22%  Similarity=0.301  Sum_probs=97.6

Q ss_pred             CCCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcc-cccCCCCCcEEEcCC
Q 018662           95 LAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME-EIEHFHDLQILEFGS  172 (352)
Q Consensus        95 l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~  172 (352)
                      +..-...|++.|.+..+|. +..+..|..+.++.|.+..++.....+..|..++++.|.+...+ .+..+ -|+.+-+++
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sN  152 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSN  152 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEec
Confidence            4444566677777777665 55566666677777766666655555666666666666665532 22222 256666666


Q ss_pred             CccC-CcccccCCCCCcEEEccCCcccee--cCCCCCCCCEEEcCCCcCCCCc-CccccccCcEEECCCCCCCCCC-CCC
Q 018662          173 NRLR-VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKME-GLS  247 (352)
Q Consensus       173 ~~l~-~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~-~~~  247 (352)
                      |++. .+..++..+.|..++.+.|.+...  .++.+.+|+.+.+..|.+..+| .+. .-.|..||+++|++..+| .|.
T Consensus       153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr  231 (722)
T KOG0532|consen  153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFR  231 (722)
T ss_pred             CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhh
Confidence            6654 334455555666666666655554  4555556666666666555554 233 223556666666666655 355


Q ss_pred             CCCCCcEEEcCCCcCCCc
Q 018662          248 TLVNLHVLDVSSNKLTLV  265 (352)
Q Consensus       248 ~~~~L~~L~l~~n~l~~~  265 (352)
                      .++.|++|.|.+|.+...
T Consensus       232 ~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  232 KMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hhhhheeeeeccCCCCCC
Confidence            566666666666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.79  E-value=5.3e-09  Score=68.28  Aligned_cols=60  Identities=37%  Similarity=0.542  Sum_probs=41.0

Q ss_pred             CcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCC
Q 018662           46 TNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKL  108 (352)
Q Consensus        46 ~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  108 (352)
                      ++|++|++++|++..+|.. |.++++|++|++++|.++..   ....|..+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i---~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI---PPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE---ETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc---CHHHHcCCCCCCEEeCcCCcC
Confidence            4567777777777777654 66777777777777777665   233566677777777777653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=2.2e-08  Score=65.35  Aligned_cols=59  Identities=34%  Similarity=0.514  Sum_probs=41.6

Q ss_pred             CCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCc
Q 018662           69 SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEI  130 (352)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~  130 (352)
                      |+|++|++++|.++..   +...|..+++|++|++++|.+..+++  +..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i---~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEI---PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEE---CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCcc---CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677777777777765   33456667777777777777776665  67777777777777753

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=3.4e-08  Score=82.62  Aligned_cols=205  Identities=19%  Similarity=0.189  Sum_probs=139.3

Q ss_pred             eeecCCCCCcCCCC----CCCCCcccEEEcCCCCCCcch---hhhhcCCCCcEEeccCCccCcccccccccc-ccCCCCc
Q 018662           28 VLDLTSFQLHDLDS----VEFPTNLTELDLTANRLTSLD---SRISHLSNLKKLSLRQNLIDDAAIEPISRW-DALAGLE   99 (352)
Q Consensus        28 ~L~l~~~~l~~~~~----~~~~~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~L~   99 (352)
                      .+-+-++.|.+...    ...+++++++++.+|.|+...   ..+.++|+|+.|+++.|++..    ++..+ ....+|+
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s----~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS----DIKSLPLPLKNLR  124 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC----ccccCcccccceE
Confidence            44555666655432    134588999999999998543   346899999999999998876    33333 2467899


Q ss_pred             EEEccCCCCC--CCCC-CccccCCcEEEccCCCcccccC----CcccccCcceEEccCCcCCCccc----ccCCCCCcEE
Q 018662          100 ELILRDNKLM--KIPD-VSIFKKLSVFDVSFNEITSSHG----LSNVTDTLKELYVSKNEVPKMEE----IEHFHDLQIL  168 (352)
Q Consensus       100 ~L~l~~~~l~--~l~~-~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L  168 (352)
                      +|-+.++.+.  .... +..+|.++.|.++.|.+..+..    .....+.+++++...|.......    ...++++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            9999888765  2333 6678888999999885543211    11124567777777776544322    3456888888


Q ss_pred             EcCCCccCCc---ccccCCCCCcEEEccCCcccee----cCCCCCCCCEEEcCCCcCCCC-----c---CccccccCcEE
Q 018662          169 EFGSNRLRVM---ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSM-----K---GFEECIALEEL  233 (352)
Q Consensus       169 ~l~~~~l~~~---~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~-----~---~~~~~~~L~~L  233 (352)
                      .+..+++...   ......+.+-.|.++.+++++.    .+..++.|..|.+..+.+...     +   -++.+++++.|
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL  284 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL  284 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence            8888877533   3455667777888888888877    667888999999988876543     1   14567777776


Q ss_pred             ECC
Q 018662          234 YLS  236 (352)
Q Consensus       234 ~l~  236 (352)
                      +=+
T Consensus       285 NGs  287 (418)
T KOG2982|consen  285 NGS  287 (418)
T ss_pred             cCc
Confidence            543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.55  E-value=2.6e-08  Score=98.37  Aligned_cols=205  Identities=20%  Similarity=0.274  Sum_probs=136.4

Q ss_pred             CCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCc--cCccccccccccccCCCCcEEEccCC-CCCC
Q 018662           34 FQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL--IDDAAIEPISRWDALAGLEELILRDN-KLMK  110 (352)
Q Consensus        34 ~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~  110 (352)
                      ......+....+...+++.+-++.+..++... .+++|++|-+.++.  +...   ..+.|..++.|++||+++| .+..
T Consensus       511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~i---s~~ff~~m~~LrVLDLs~~~~l~~  586 (889)
T KOG4658|consen  511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEI---SGEFFRSLPLLRVLDLSGNSSLSK  586 (889)
T ss_pred             cCccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhc---CHHHHhhCcceEEEECCCCCccCc
Confidence            34444555566688999999999988776653 45689999999985  4443   3344788999999999987 6788


Q ss_pred             CCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCC-c-ccccCCCCCcEEEcCCCccC----CcccccC
Q 018662          111 IPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK-M-EEIEHFHDLQILEFGSNRLR----VMENLQN  183 (352)
Q Consensus       111 l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~L~~L~l~~~~l~----~~~~~~~  183 (352)
                      +|. ++.+-+|++|+++++.+..++.....+..|.+|++..+.... + .....+.+|++|.+......    ....+..
T Consensus       587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~  666 (889)
T KOG4658|consen  587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELEN  666 (889)
T ss_pred             CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhc
Confidence            998 888999999999999999998888888999999999876433 3 33445899999999776532    2233455


Q ss_pred             CCCCcEEEccCCcccee-cCCCCCCCC----EEEcCCCcCC-CCcCccccccCcEEECCCCCCCC
Q 018662          184 LTNLQELWLGRNRIKVV-NLCGLKCIK----KISLQSNRLT-SMKGFEECIALEELYLSHNGISK  242 (352)
Q Consensus       184 ~~~L~~L~l~~~~l~~~-~~~~~~~L~----~L~l~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~  242 (352)
                      +.+|+.+.......... .+.....|.    .+.+.++... ....+..+.+|+.|.+.++.+.+
T Consensus       667 Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  667 LEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             ccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence            55555555433322000 112222222    2222222221 22345567777777777776654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=1.9e-08  Score=84.18  Aligned_cols=190  Identities=19%  Similarity=0.184  Sum_probs=98.0

Q ss_pred             CCCCcEEEccCCCCCCCCC----CccccCCcEEEccCCCcccccCCc-ccccCcceEEccCCcCCCc---ccccCCCCCc
Q 018662           95 LAGLEELILRDNKLMKIPD----VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKM---EEIEHFHDLQ  166 (352)
Q Consensus        95 l~~L~~L~l~~~~l~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~  166 (352)
                      ++.++.+|+.+|.++.+..    +.++|.|+.|+++.|++....... ....+|+.|.+++..+...   ..+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4444555555554443222    334555555555555544332222 2234555555555544331   2244555555


Q ss_pred             EEEcCCCccCCc----cccc-CCCCCcEEEccCCcccee-----cCCCCCCCCEEEcCCCcCCCC---cCccccccCcEE
Q 018662          167 ILEFGSNRLRVM----ENLQ-NLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSM---KGFEECIALEEL  233 (352)
Q Consensus       167 ~L~l~~~~l~~~----~~~~-~~~~L~~L~l~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L  233 (352)
                      .+.++.|.+...    .... -.+.++++.+..|.....     ....++++..+.+..+.+...   ......|.+.-|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            565555533211    0011 122444454444433222     223467777777877766555   245566777777


Q ss_pred             ECCCCCCCCC---CCCCCCCCCcEEEcCCCcCCCc--------ccccCCCCCCeEEcCCCCCcc
Q 018662          234 YLSHNGISKM---EGLSTLVNLHVLDVSSNKLTLV--------DDIQNLSRLEDLWLNDNQIES  286 (352)
Q Consensus       234 ~l~~n~l~~~---~~~~~~~~L~~L~l~~n~l~~~--------~~~~~~~~L~~L~l~~n~i~~  286 (352)
                      +++.+++...   +.+.+++.|..|.++++.+.+.        -.+..+++++.|+=+  +|++
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIss  291 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KISS  291 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccch
Confidence            8888877764   3456777788888888877543        123455666655433  5543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.50  E-value=3.8e-09  Score=92.06  Aligned_cols=259  Identities=19%  Similarity=0.119  Sum_probs=150.5

Q ss_pred             cccEEEcCCCCCC---cchhhhhcCCCCcEEeccCCc-cCcccccccccc-ccCCCCcEEEccCC-CCCC--CCC-Cccc
Q 018662           47 NLTELDLTANRLT---SLDSRISHLSNLKKLSLRQNL-IDDAAIEPISRW-DALAGLEELILRDN-KLMK--IPD-VSIF  117 (352)
Q Consensus        47 ~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~-~~l~~L~~L~l~~~-~l~~--l~~-~~~~  117 (352)
                      .++.|.++++.=.   .+-....++|+++.|.+.++. +++..   ...+ ..+++|++|++..| .++.  +.. ...+
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s---~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS---LLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH---HHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            4667777777543   233334677788888777763 44331   2222 35777788877775 4442  221 3457


Q ss_pred             cCCcEEEccCCCccc---ccCCcccccCcceEEccCCcCCCccc----ccCCCCCcEEEcCCCc-cCCc---ccccCCCC
Q 018662          118 KKLSVFDVSFNEITS---SHGLSNVTDTLKELYVSKNEVPKMEE----IEHFHDLQILEFGSNR-LRVM---ENLQNLTN  186 (352)
Q Consensus       118 ~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~~-l~~~---~~~~~~~~  186 (352)
                      ++|++++++++.-..   +......+..++.+...+|.-.+...    -+.+..+..+++..|. ++..   ..-..+..
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            777888887775332   22223334556666666654443222    1233445555544442 2211   11245666


Q ss_pred             CcEEEccCCcc-cee----cCCCCCCCCEEEcCCCcC-CCCc---CccccccCcEEECCCCCCCC---CC-CCCCCCCCc
Q 018662          187 LQELWLGRNRI-KVV----NLCGLKCIKKISLQSNRL-TSMK---GFEECIALEELYLSHNGISK---ME-GLSTLVNLH  253 (352)
Q Consensus       187 L~~L~l~~~~l-~~~----~~~~~~~L~~L~l~~~~~-~~~~---~~~~~~~L~~L~l~~n~l~~---~~-~~~~~~~L~  253 (352)
                      |+.+..+++.- +..    -...+.+|+.+.+.+++- +...   --.+++.|+.+++..+....   +. .-..++.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            77777766543 222    234567888888888743 3321   12467788888888775433   22 234677888


Q ss_pred             EEEcCCCcC-CCc------ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          254 VLDVSSNKL-TLV------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       254 ~L~l~~n~l-~~~------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      .+.++++.. ++.      ..-..+..|+.+.+++++.+.  +........|++|+.+++-++.
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~--d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT--DATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch--HHHHHHHhhCcccceeeeechh
Confidence            888887764 222      223455678888888888554  5556667888888888888875

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.49  E-value=2.3e-08  Score=82.62  Aligned_cols=238  Identities=22%  Similarity=0.227  Sum_probs=133.5

Q ss_pred             CCcccEEEcCCCCCCc-----chhhhhcCCCCcEEeccCCccCcc---ccc----cccccccCCCCcEEEccCCCCC-CC
Q 018662           45 PTNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNLIDDA---AIE----PISRWDALAGLEELILRDNKLM-KI  111 (352)
Q Consensus        45 ~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~---~~~----~~~~~~~l~~L~~L~l~~~~l~-~l  111 (352)
                      ...+.++++++|.|.+     +...+.+-++|+..+++.-.....   .++    ....+..|++|+..+++.|.+. ..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4667777777777662     334455556676666665321110   000    1122345556666666655444 22


Q ss_pred             CC-----CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc------cc
Q 018662          112 PD-----VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM------EN  180 (352)
Q Consensus       112 ~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~  180 (352)
                      |.     +++...|.+|.+++|.+..+..... -..|.+|-.       ..-...-|.|+.+....|++...      ..
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~ri-gkal~~la~-------nKKaa~kp~Le~vicgrNRlengs~~~~a~~  180 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRI-GKALFHLAY-------NKKAADKPKLEVVICGRNRLENGSKELSAAL  180 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHH-HHHHHHHHH-------HhhhccCCCceEEEeccchhccCcHHHHHHH
Confidence            21     3444455555555554432211000 001111100       01123456677777777776422      12


Q ss_pred             ccCCCCCcEEEccCCcccee--------cCCCCCCCCEEEcCCCcCCCCc------CccccccCcEEECCCCCCCCC--C
Q 018662          181 LQNLTNLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTSMK------GFEECIALEELYLSHNGISKM--E  244 (352)
Q Consensus       181 ~~~~~~L~~L~l~~~~l~~~--------~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~n~l~~~--~  244 (352)
                      +.....|+.+.+..|.+...        ....+.+|+.|++++|.++...      .+..++.|+.|.+..|-++.-  .
T Consensus       181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~  260 (388)
T COG5238         181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK  260 (388)
T ss_pred             HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence            34446788888888877665        4566788999999988776542      244567788888888877642  1


Q ss_pred             ----CC--CCCCCCcEEEcCCCcCCCc--c--cc-----cCCCCCCeEEcCCCCCcchHHH
Q 018662          245 ----GL--STLVNLHVLDVSSNKLTLV--D--DI-----QNLSRLEDLWLNDNQIESLESI  290 (352)
Q Consensus       245 ----~~--~~~~~L~~L~l~~n~l~~~--~--~~-----~~~~~L~~L~l~~n~i~~~~~~  290 (352)
                          .+  ...++|..|..++|.+.+-  .  .+     ..+|-|..|.+.||+|....+.
T Consensus       261 ~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d~  321 (388)
T COG5238         261 SVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELADF  321 (388)
T ss_pred             HHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHHH
Confidence                11  2457788888888876432  1  11     3567788888888888865443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=8.1e-09  Score=86.33  Aligned_cols=168  Identities=20%  Similarity=0.234  Sum_probs=89.9

Q ss_pred             CcccEEEcCCCCCC--cchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCC-CCCCCCC---CccccC
Q 018662           46 TNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN-KLMKIPD---VSIFKK  119 (352)
Q Consensus        46 ~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~---~~~~~~  119 (352)
                      +++++|+++...++  ++-..++.|.+|+.|++.++.+.+..   ...+.....|+.|+++.| .++....   +.+++.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I---~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI---VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH---HHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            45777777777776  44445677777777777777776631   223445667777777766 4553322   566677


Q ss_pred             CcEEEccCCCccccc---CCcccccCcceEEccCCcCCC----cc-cccCCCCCcEEEcCCCccC---CcccccCCCCCc
Q 018662          120 LSVFDVSFNEITSSH---GLSNVTDTLKELYVSKNEVPK----ME-EIEHFHDLQILEFGSNRLR---VMENLQNLTNLQ  188 (352)
Q Consensus       120 L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~----~~-~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~L~  188 (352)
                      |..|++++|.+....   ...+..++|..|+++++.-.-    +. -...+++|.+|+++.+..-   ....+.+++.|+
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            777777777654321   112224556666666653111    11 1345555666666554331   112344555555


Q ss_pred             EEEccCCccc-ee---cCCCCCCCCEEEcCCC
Q 018662          189 ELWLGRNRIK-VV---NLCGLKCIKKISLQSN  216 (352)
Q Consensus       189 ~L~l~~~~l~-~~---~~~~~~~L~~L~l~~~  216 (352)
                      ++.++.|..- ..   .+...|.|.+|++.++
T Consensus       342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            5555554311 11   3444455555555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=5.6e-09  Score=87.26  Aligned_cols=171  Identities=22%  Similarity=0.131  Sum_probs=127.8

Q ss_pred             cCceeecCCCCCcCCCC---CCCCCcccEEEcCCCCCC-cchhhhhcCCCCcEEeccCC-ccCccccccccccccCCCCc
Q 018662           25 SNTVLDLTSFQLHDLDS---VEFPTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQN-LIDDAAIEPISRWDALAGLE   99 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~L~   99 (352)
                      .+++||+++..++--..   +..|.+|+.|.+.++++. .+...+.+..+|+.|+++.+ .++..+...  -+.+++.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l--l~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL--LLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH--HHHhhhhHh
Confidence            48999999998875322   345789999999999998 67778999999999999996 566543222  246899999


Q ss_pred             EEEccCCCCCC-C-CC-C-ccccCCcEEEccCCCcc----cccCCcccccCcceEEccCCcCCC---cccccCCCCCcEE
Q 018662          100 ELILRDNKLMK-I-PD-V-SIFKKLSVFDVSFNEIT----SSHGLSNVTDTLKELYVSKNEVPK---MEEIEHFHDLQIL  168 (352)
Q Consensus       100 ~L~l~~~~l~~-l-~~-~-~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L  168 (352)
                      .|++++|.+.. . .. + .--++|+.|+++++.-.    ++......++++.+|+++.|....   ...+.+++.|+++
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            99999997663 1 11 2 22467899999988532    223334459999999999997666   3567889999999


Q ss_pred             EcCCCccCCc---ccccCCCCCcEEEccCCcc
Q 018662          169 EFGSNRLRVM---ENLQNLTNLQELWLGRNRI  197 (352)
Q Consensus       169 ~l~~~~l~~~---~~~~~~~~L~~L~l~~~~l  197 (352)
                      .++.|-.-.+   -.+...|.|.+|++.++--
T Consensus       344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             ehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            9999855333   3467888999999877643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.38  E-value=6.3e-07  Score=71.02  Aligned_cols=124  Identities=23%  Similarity=0.325  Sum_probs=93.5

Q ss_pred             CceeecCCCCCcCCCCCCC-CCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662           26 NTVLDLTSFQLHDLDSVEF-PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  104 (352)
                      -+.+++++.++..+..++. ..+...+++++|.+..++ .|..++.|.+|.+++|.|+.+.+.. .  ..++.|..|.+.
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L-~--~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDL-D--TFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccch-h--hhccccceEEec
Confidence            5778888888877766544 367788999999888764 3778889999999999998875532 2  347889999999


Q ss_pred             CCCCCCC---CCCccccCCcEEEccCCCcccccC----CcccccCcceEEccCCcC
Q 018662          105 DNKLMKI---PDVSIFKKLSVFDVSFNEITSSHG----LSNVTDTLKELYVSKNEV  153 (352)
Q Consensus       105 ~~~l~~l---~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~  153 (352)
                      +|.+..+   .++..+|+|++|.+-+|+......    +...+++|+.|++.+-..
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            9887754   447788999999999998876543    344578999998876543

>PLN03150 hypothetical protein; Provisional

Probab=98.38  E-value=1.1e-06  Score=84.90  Aligned_cols=103  Identities=19%  Similarity=0.246  Sum_probs=71.6

Q ss_pred             cccEEEcCCCCCC-cchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCC-CCC-CccccCCcEE
Q 018662           47 NLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK-IPD-VSIFKKLSVF  123 (352)
Q Consensus        47 ~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~~L~~L  123 (352)
                      .++.|+|++|.+. .+|..+..+++|+.|++++|.+.+..|   ..+..+++|+.|++++|.+.+ +|. +..+++|+.|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP---~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP---PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC---hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            3778888888887 677778888888888888888876432   346677888888888888874 555 7778888888


Q ss_pred             EccCCCcccccCCc-cc-ccCcceEEccCCc
Q 018662          124 DVSFNEITSSHGLS-NV-TDTLKELYVSKNE  152 (352)
Q Consensus       124 ~l~~~~~~~~~~~~-~~-~~~L~~L~l~~~~  152 (352)
                      ++++|.+.+..+.. .. ..++..+++.+|.
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEecCCc
Confidence            88888776543321 11 2334455555543

>PLN03150 hypothetical protein; Provisional

Probab=98.37  E-value=9.1e-07  Score=85.39  Aligned_cols=105  Identities=23%  Similarity=0.329  Sum_probs=75.9

Q ss_pred             CCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC-CC-CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCC
Q 018662          208 IKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK-ME-GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLND  281 (352)
Q Consensus       208 L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~  281 (352)
                      ++.|++++|.+.+. | .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+.+.  +.+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67788888877654 2 46678888888888888874 44 477788888888888888764  5677888888888888


Q ss_pred             CCCcc-hHHHHHHHhccccCccEeeccCCCccccc
Q 018662          282 NQIES-LESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       282 n~i~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      |.++. +|..   +.....++..+++.+|+..|..
T Consensus       500 N~l~g~iP~~---l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        500 NSLSGRVPAA---LGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             CcccccCChH---HhhccccCceEEecCCccccCC
Confidence            88773 3322   2222345677888888877765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.36  E-value=2.3e-08  Score=87.26  Aligned_cols=281  Identities=19%  Similarity=0.085  Sum_probs=184.7

Q ss_pred             cCceeecCCCCCcCCCC----CCCCCcccEEEcCCCC-CC--cchhhhhcCCCCcEEeccCC-ccCccccccccccccCC
Q 018662           25 SNTVLDLTSFQLHDLDS----VEFPTNLTELDLTANR-LT--SLDSRISHLSNLKKLSLRQN-LIDDAAIEPISRWDALA   96 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~----~~~~~~L~~L~l~~~~-l~--~l~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~   96 (352)
                      -++.|.++++.-.+..+    ...+++++.|++.+|. ++  +.-..-..|++|++|++..| .+++.....  -...++
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~--la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY--LAEGCR  216 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH--HHHhhh
Confidence            57888888886655543    2457999999999995 43  12222357999999999995 566543221  123689


Q ss_pred             CCcEEEccCC-CCCC--CCC-CccccCCcEEEccCCCcccccC---CcccccCcceEEccCCcCCCc----ccccCCCCC
Q 018662           97 GLEELILRDN-KLMK--IPD-VSIFKKLSVFDVSFNEITSSHG---LSNVTDTLKELYVSKNEVPKM----EEIEHFHDL  165 (352)
Q Consensus        97 ~L~~L~l~~~-~l~~--l~~-~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~L  165 (352)
                      +|++|++++| .+++  +.. ..++..++.+...+|.-.....   ....+.-+..+++..|...+-    ..-..+..|
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            9999999998 4553  333 5666677777777664333221   122244456666556643331    223456788


Q ss_pred             cEEEcCCCccC---Cccc-ccCCCCCcEEEccCCc-cceec----CCCCCCCCEEEcCCCcCCCCc----CccccccCcE
Q 018662          166 QILEFGSNRLR---VMEN-LQNLTNLQELWLGRNR-IKVVN----LCGLKCIKKISLQSNRLTSMK----GFEECIALEE  232 (352)
Q Consensus       166 ~~L~l~~~~l~---~~~~-~~~~~~L~~L~l~~~~-l~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~  232 (352)
                      +.+..+++...   .+.. ..++++|+.+.+..+. +....    -.+++.|+.+++..+......    .-.+|+.|+.
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence            88888876542   1122 3567899999998886 33332    245788999999888554332    2347899999


Q ss_pred             EECCCCCCCCCC-------CCCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCcc
Q 018662          233 LYLSHNGISKME-------GLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT  302 (352)
Q Consensus       233 L~l~~n~l~~~~-------~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~  302 (352)
                      +.++.+....-.       .......++.+.+++++....   +.+..+++|+.+++-+++-..- +.+..+...+|+++
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk-~~i~~~~~~lp~i~  455 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK-EAISRFATHLPNIK  455 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh-hhhHHHHhhCccce
Confidence            999987543211       234567799999999986543   6778889999999999873321 44566778889988


Q ss_pred             EeeccC
Q 018662          303 TIYLEN  308 (352)
Q Consensus       303 ~L~l~~  308 (352)
                      +..+-.
T Consensus       456 v~a~~a  461 (483)
T KOG4341|consen  456 VHAYFA  461 (483)
T ss_pred             ehhhcc
Confidence            765443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.35  E-value=4e-07  Score=72.14  Aligned_cols=119  Identities=23%  Similarity=0.312  Sum_probs=72.8

Q ss_pred             EEEcCCCccCCcccccC-CCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCC-cCcc-ccccCcEEECCCCCCCC
Q 018662          167 ILEFGSNRLRVMENLQN-LTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM-KGFE-ECIALEELYLSHNGISK  242 (352)
Q Consensus       167 ~L~l~~~~l~~~~~~~~-~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~n~l~~  242 (352)
                      .+++.+.++..+..++. .-....+++++|.+... .+..++.|.+|.+.+|.++.+ |.+. .+|+|..|.+.+|.+..
T Consensus        23 e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~  102 (233)
T KOG1644|consen   23 ELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE  102 (233)
T ss_pred             ccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh
Confidence            34444444433332221 22455677777776665 666777777777777777766 3333 35667777777776554


Q ss_pred             ---CCCCCCCCCCcEEEcCCCcCCCc-----ccccCCCCCCeEEcCCCCCc
Q 018662          243 ---MEGLSTLVNLHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIE  285 (352)
Q Consensus       243 ---~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~i~  285 (352)
                         +..+..++.|++|.+-+|.++..     -.+..+|+|+.||+.+=...
T Consensus       103 l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  103 LGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             hhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence               34556667777777777777655     34556677777777665443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.26  E-value=1.4e-06  Score=52.15  Aligned_cols=38  Identities=47%  Similarity=0.705  Sum_probs=29.4

Q ss_pred             CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCc
Q 018662           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD   83 (352)
Q Consensus        46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~   83 (352)
                      ++|++|++++|+|+.+|+.+.+|++|++|++++|++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            46788888888888888778888888888888887775

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.24  E-value=5.4e-07  Score=74.65  Aligned_cols=218  Identities=22%  Similarity=0.199  Sum_probs=102.6

Q ss_pred             cccCCCCcEEEccCCCCCC-----CCC-CccccCCcEEEccCCCcccc-----------cCCcccccCcceEEccCCcCC
Q 018662           92 WDALAGLEELILRDNKLMK-----IPD-VSIFKKLSVFDVSFNEITSS-----------HGLSNVTDTLKELYVSKNEVP  154 (352)
Q Consensus        92 ~~~l~~L~~L~l~~~~l~~-----l~~-~~~~~~L~~L~l~~~~~~~~-----------~~~~~~~~~L~~L~l~~~~~~  154 (352)
                      +..+..+..+++++|.+..     +.. +.+-.+|+..+++.-.....           .+....|++|+.++++.|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            3446778888888887763     222 44556677666664321111           112223555555555555543


Q ss_pred             C--c----ccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcC-----
Q 018662          155 K--M----EEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKG-----  223 (352)
Q Consensus       155 ~--~----~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~-----  223 (352)
                      .  +    +.+.....|.+|.+.+|.+..+..-.--..|.+|-  .|+    -...-|.|+++....|.+.+-+.     
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la--~nK----Kaa~kp~Le~vicgrNRlengs~~~~a~  179 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA--YNK----KAADKPKLEVVICGRNRLENGSKELSAA  179 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH--HHh----hhccCCCceEEEeccchhccCcHHHHHH
Confidence            3  1    12334444555555555443211100000000000  000    12233556666666665544321     


Q ss_pred             -ccccccCcEEECCCCCCCC--C-----CCCCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchH-
Q 018662          224 -FEECIALEELYLSHNGISK--M-----EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLE-  288 (352)
Q Consensus       224 -~~~~~~L~~L~l~~n~l~~--~-----~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~-  288 (352)
                       +..-..|+.+.+.+|.|..  +     -++..+.+|+.||+..|.++..      ..+..++.|++|.+.+|-++.-. 
T Consensus       180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~  259 (388)
T COG5238         180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV  259 (388)
T ss_pred             HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence             2222456666666666543  1     1244556677777776666533      33445555677777777665311 


Q ss_pred             -HHHHHH-hccccCccEeeccCCCccccc
Q 018662          289 -SIVEAV-AGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       289 -~~~~~~-~~~~~~L~~L~l~~n~~~~~~  315 (352)
                       .....+ -...|+|..|....|..-+.+
T Consensus       260 ~~v~~~f~e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         260 KSVLRRFNEKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             HHHHHHhhhhcCCCccccccchhhhcCce
Confidence             111111 122466666666666554443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.18  E-value=2e-06  Score=51.52  Aligned_cols=38  Identities=39%  Similarity=0.569  Sum_probs=18.7

Q ss_pred             CCcEEEcCCCcCCCccc-ccCCCCCCeEEcCCCCCcchH
Q 018662          251 NLHVLDVSSNKLTLVDD-IQNLSRLEDLWLNDNQIESLE  288 (352)
Q Consensus       251 ~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~i~~~~  288 (352)
                      +|++|++++|+++.++. +..+++|+.|++++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            35555555555555533 555555555555555555443

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.14  E-value=1.7e-06  Score=83.60  Aligned_cols=143  Identities=19%  Similarity=0.200  Sum_probs=84.0

Q ss_pred             CCCcEEEcCCCccCCccc----ccCCCCCcEEEccCCcccee----cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEE
Q 018662          163 HDLQILEFGSNRLRVMEN----LQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSMKGFEECIALEELY  234 (352)
Q Consensus       163 ~~L~~L~l~~~~l~~~~~----~~~~~~L~~L~l~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  234 (352)
                      .+|++|++++...-.-.+    -..+|.|++|.+.+-.+...    -...+++|..||+++.+++...+++.+++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            345555565533211111    13456677776666554443    2345677777777777777666666777777777


Q ss_pred             CCCCCCCC---CCCCCCCCCCcEEEcCCCcCCCc--------ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccE
Q 018662          235 LSHNGISK---MEGLSTLVNLHVLDVSSNKLTLV--------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT  303 (352)
Q Consensus       235 l~~n~l~~---~~~~~~~~~L~~L~l~~n~l~~~--------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~  303 (352)
                      +++=.+..   +..+..+.+|+.||++..+....        +.-..+|.|+.||.+++.+..  +........-|+|+.
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~--~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE--EILEELLNSHPNLQQ  279 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH--HHHHHHHHhCccHhh
Confidence            66655544   23456677777777776543221        334457788888888777764  444445455566665


Q ss_pred             eecc
Q 018662          304 IYLE  307 (352)
Q Consensus       304 L~l~  307 (352)
                      +-+-
T Consensus       280 i~~~  283 (699)
T KOG3665|consen  280 IAAL  283 (699)
T ss_pred             hhhh
Confidence            5433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=2e-07  Score=77.38  Aligned_cols=87  Identities=26%  Similarity=0.377  Sum_probs=75.1

Q ss_pred             cccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeec
Q 018662          227 CIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYL  306 (352)
Q Consensus       227 ~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l  306 (352)
                      +.+.+.|+..+|++.++.....++.|+.|.|+-|+|+.+..+..|++|++|+|..|.|.++++.  ..+.++|+|+.|.|
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL--~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL--EYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH--HHHhcCchhhhHhh
Confidence            4567788999999999887888899999999999999998899999999999999999988764  56788999999999


Q ss_pred             cCCCccccc
Q 018662          307 ENNPQNLQI  315 (352)
Q Consensus       307 ~~n~~~~~~  315 (352)
                      ..||..+.-
T Consensus        96 ~ENPCc~~a  104 (388)
T KOG2123|consen   96 DENPCCGEA  104 (388)
T ss_pred             ccCCccccc
Confidence            999865554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.09  E-value=2.4e-06  Score=82.55  Aligned_cols=132  Identities=20%  Similarity=0.196  Sum_probs=102.4

Q ss_pred             CCCCcEEEccCCcccee-----cCCCCCCCCEEEcCCCcCCCCc---CccccccCcEEECCCCCCCCCCCCCCCCCCcEE
Q 018662          184 LTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLSHNGISKMEGLSTLVNLHVL  255 (352)
Q Consensus       184 ~~~L~~L~l~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L  255 (352)
                      -.+|++|++++...-..     -...+|+|++|.+++-.+....   ....+|+|..||+++++++.+.+++.+++|+.|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL  200 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence            35789999988653332     2346899999999997765542   345789999999999999999999999999999


Q ss_pred             EcCCCcCCCc---ccccCCCCCCeEEcCCCCCcchHHHHH---HHhccccCccEeeccCCCccccc
Q 018662          256 DVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVE---AVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       256 ~l~~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      .+.+=.+..-   ..+-++++|+.||+|..+-...+..+.   +....+|.|+.||.+|.....++
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            9988887653   567789999999999987655443333   34566899999999998655444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.99  E-value=4.8e-05  Score=68.23  Aligned_cols=134  Identities=17%  Similarity=0.221  Sum_probs=83.0

Q ss_pred             cccCceeecCCCCCcCCCCCCCCCcccEEEcCCC-CCCcchhhhhcCCCCcEEeccCC-ccCccccccccccccCCCCcE
Q 018662           23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTAN-RLTSLDSRISHLSNLKKLSLRQN-LIDDAAIEPISRWDALAGLEE  100 (352)
Q Consensus        23 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~L~~  100 (352)
                      ...++.|+++++.++.+|  .+|++|++|.+++| .++.+|..+  .++|++|.+++| .+..    .      ...|+.
T Consensus        51 ~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s----L------P~sLe~  116 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG----L------PESVRS  116 (426)
T ss_pred             hcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc----c------ccccce
Confidence            478899999999999888  57888999999886 556676544  358999999987 4432    1      245777


Q ss_pred             EEccCCCCCCCCCCccccCCcEEEccCCCcccccCCc-ccccCcceEEccCCcCCCcccccCCCCCcEEEcCCC
Q 018662          101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN  173 (352)
Q Consensus       101 L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  173 (352)
                      |++..+....++.  -.++|+.|.+.++......... ...++|++|.+++|.....+. .-..+|+.|.+..+
T Consensus       117 L~L~~n~~~~L~~--LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~-~LP~SLk~L~ls~n  187 (426)
T PRK15386        117 LEIKGSATDSIKN--VPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPE-KLPESLQSITLHIE  187 (426)
T ss_pred             EEeCCCCCccccc--CcchHhheeccccccccccccccccCCcccEEEecCCCcccCcc-cccccCcEEEeccc
Confidence            8877655443321  1125667766543211111111 124678888888776443211 12256777777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.88  E-value=8.2e-06  Score=67.48  Aligned_cols=84  Identities=25%  Similarity=0.327  Sum_probs=40.0

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCC--CCC-cchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEE
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTAN--RLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL  101 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~--~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  101 (352)
                      .+..+.+.+..++++...+.+++|+.|.++.|  ++. .++.....+|+|++|++++|++..+  +.+..+..+.+|..|
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l--stl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL--STLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc--cccchhhhhcchhhh
Confidence            34445555555555554555555555555555  333 3333334445555555555554431  122333344445555


Q ss_pred             EccCCCCCC
Q 018662          102 ILRDNKLMK  110 (352)
Q Consensus       102 ~l~~~~l~~  110 (352)
                      ++..|....
T Consensus       122 dl~n~~~~~  130 (260)
T KOG2739|consen  122 DLFNCSVTN  130 (260)
T ss_pred             hcccCCccc
Confidence            555444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.84  E-value=1.4e-06  Score=64.76  Aligned_cols=84  Identities=25%  Similarity=0.336  Sum_probs=43.1

Q ss_pred             CcccEEEcCCCCCCcchhhhh-cCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcEE
Q 018662           46 TNLTELDLTANRLTSLDSRIS-HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF  123 (352)
Q Consensus        46 ~~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L  123 (352)
                      .+|+..++++|.+.++|..|. +++-++.|++++|.+.+.    +..+..++.|+.|+++.|.+...|. +..+.++-.|
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv----PeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV----PEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML  128 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc----hHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence            345555555555555555543 344555555555555552    2234445555555555555555444 3334555555


Q ss_pred             EccCCCcccc
Q 018662          124 DVSFNEITSS  133 (352)
Q Consensus       124 ~l~~~~~~~~  133 (352)
                      +..+|....+
T Consensus       129 ds~~na~~ei  138 (177)
T KOG4579|consen  129 DSPENARAEI  138 (177)
T ss_pred             cCCCCccccC
Confidence            5555544443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=8.1e-07  Score=73.89  Aligned_cols=100  Identities=25%  Similarity=0.281  Sum_probs=51.6

Q ss_pred             CCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEEcCCC
Q 018662          206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDN  282 (352)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n  282 (352)
                      .+.+.|+.+++.+.++.....+|.|+.|.|+-|.|+.+..+..+.+|++|.|..|.|.++   ..+.++|+|+.|.|..|
T Consensus        19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            344455555555555444444555555555555555555555555555555555555554   34455666666666655


Q ss_pred             CCc--chHHHHHHHhccccCccEee
Q 018662          283 QIE--SLESIVEAVAGSRETLTTIY  305 (352)
Q Consensus       283 ~i~--~~~~~~~~~~~~~~~L~~L~  305 (352)
                      +=.  .=+..-...+.-+|+|+.||
T Consensus        99 PCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   99 PCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CcccccchhHHHHHHHHcccchhcc
Confidence            522  11112223334455565553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.70  E-value=2.1e-05  Score=65.14  Aligned_cols=101  Identities=26%  Similarity=0.274  Sum_probs=60.8

Q ss_pred             CCCCEEEcCCCcCCCCcCccccccCcEEECCCC--CCCC-CCC-CCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEE
Q 018662          206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHN--GISK-MEG-LSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLW  278 (352)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~-~~~-~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~  278 (352)
                      ..|+.+++.+..++....+..+|+|+.|.++.|  ++.. ++. ...+++|+++++++|++..+   ..+..+.+|..|+
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld  122 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD  122 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence            344445555555555555566677777777777  3322 222 23447777777777777655   4455566677777


Q ss_pred             cCCCCCcchHHHHHHHhccccCccEeec
Q 018662          279 LNDNQIESLESIVEAVAGSRETLTTIYL  306 (352)
Q Consensus       279 l~~n~i~~~~~~~~~~~~~~~~L~~L~l  306 (352)
                      +.+|..+.+...-...+.-+++|+.|+-
T Consensus       123 l~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  123 LFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cccCCccccccHHHHHHHHhhhhccccc
Confidence            7777766655444555666677776653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.68  E-value=3.6e-06  Score=62.69  Aligned_cols=106  Identities=20%  Similarity=0.295  Sum_probs=77.0

Q ss_pred             cccEEEcCCCCCCcchhh---hhcCCCCcEEeccCCccCccccccccccc-cCCCCcEEEccCCCCCCCCC-CccccCCc
Q 018662           47 NLTELDLTANRLTSLDSR---ISHLSNLKKLSLRQNLIDDAAIEPISRWD-ALAGLEELILRDNKLMKIPD-VSIFKKLS  121 (352)
Q Consensus        47 ~L~~L~l~~~~l~~l~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~l~~-~~~~~~L~  121 (352)
                      .+..++++.|.+--++..   +.+...|+..++++|.++..    +..|. ..+..+.+++++|.+..+|. +..++.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f----p~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr  103 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF----PKKFTIKFPTATTLNLANNEISDVPEELAAMPALR  103 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC----CHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence            355677888877655554   45566778889999988873    33443 35578888999999998887 88888999


Q ss_pred             EEEccCCCcccccCCcccccCcceEEccCCcCCCc
Q 018662          122 VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM  156 (352)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  156 (352)
                      .++++.|++...+.....+.++..|+..++....+
T Consensus       104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             hcccccCccccchHHHHHHHhHHHhcCCCCccccC
Confidence            99999998887766555566777777776665553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.48  E-value=0.0006  Score=61.35  Aligned_cols=131  Identities=11%  Similarity=0.160  Sum_probs=57.2

Q ss_pred             ccCcceEEccCCcCCCcccccCCCCCcEEEcCCCc-cCCcccccCCCCCcEEEccCC-ccceecCCCCCCCCEEEcCCCc
Q 018662          140 TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR-LRVMENLQNLTNLQELWLGRN-RIKVVNLCGLKCIKKISLQSNR  217 (352)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~L~~L~l~~~~  217 (352)
                      +..++.|++++|.+..++  ....+|+.|.+.+|. +...+.. -.++|+.|.+.+| .+..    -.++|+.|++..+.
T Consensus        51 ~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~s----LP~sLe~L~L~~n~  123 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISG----LPESVRSLEIKGSA  123 (426)
T ss_pred             hcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccc----cccccceEEeCCCC
Confidence            356667777766655543  223356666666532 2222210 1235566666555 2221    12345555555443


Q ss_pred             CCCCcCccccccCcEEECCCCCCC---CCCCCCCCCCCcEEEcCCCcCCCcc-cccCCCCCCeEEcCCC
Q 018662          218 LTSMKGFEECIALEELYLSHNGIS---KMEGLSTLVNLHVLDVSSNKLTLVD-DIQNLSRLEDLWLNDN  282 (352)
Q Consensus       218 ~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n  282 (352)
                      ...++.+  +++|+.|.+.+++..   .++ ..-+++|++|++.+|.....+ .+  ..+|+.|.++.+
T Consensus       124 ~~~L~~L--PssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n  187 (426)
T PRK15386        124 TDSIKNV--PNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNIILPEKL--PESLQSITLHIE  187 (426)
T ss_pred             CcccccC--cchHhheeccccccccccccc-cccCCcccEEEecCCCcccCcccc--cccCcEEEeccc
Confidence            3322211  234555554332110   011 012245666666555533321 12  135555665544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.77  E-value=0.0081  Score=45.32  Aligned_cols=77  Identities=25%  Similarity=0.492  Sum_probs=29.0

Q ss_pred             cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCCc--ccccCCCCC
Q 018662          201 NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRL  274 (352)
Q Consensus       201 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L  274 (352)
                      .+..+.+++.+.+..+ +..++  .+..++.++.+.+.. .+..+  ..+..+++|+.+.+..+ +..+  ..+..+ +|
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l  105 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL  105 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred             hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence            4444445555555443 33332  344454555555543 22222  12344555555555443 3322  334444 55


Q ss_pred             CeEEcCC
Q 018662          275 EDLWLND  281 (352)
Q Consensus       275 ~~L~l~~  281 (352)
                      +.+.+..
T Consensus       106 ~~i~~~~  112 (129)
T PF13306_consen  106 KEINIPS  112 (129)
T ss_dssp             -EEE-TT
T ss_pred             eEEEECC
Confidence            5555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.64  E-value=0.0075  Score=45.53  Aligned_cols=31  Identities=16%  Similarity=0.397  Sum_probs=10.3

Q ss_pred             cccEEEcCCCCCCcchhh-hhcCCCCcEEeccC
Q 018662           47 NLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQ   78 (352)
Q Consensus        47 ~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~   78 (352)
                      +|+.+.+.. .+..++.. |..+++|+.+.+..
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred             CCCEEEECC-CeeEeChhhcccccccccccccc
Confidence            444444442 23334332 44444455554444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.46  E-value=0.00033  Score=65.90  Aligned_cols=227  Identities=25%  Similarity=0.224  Sum_probs=114.0

Q ss_pred             hcCCCCcEEeccCC-ccCccccccccccccCCCCcEEEccCC-C-CCCCC-----CCccccCCcEEEccCCC-ccccc--
Q 018662           66 SHLSNLKKLSLRQN-LIDDAAIEPISRWDALAGLEELILRDN-K-LMKIP-----DVSIFKKLSVFDVSFNE-ITSSH--  134 (352)
Q Consensus        66 ~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~-~-l~~l~-----~~~~~~~L~~L~l~~~~-~~~~~--  134 (352)
                      ..++.|+.+.+.++ .+....  .......++.|+.|+++++ . ....+     ....+++|++|+++++. ++...  
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             hhCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            34678888888776 343321  1123346778888888763 2 11111     13446778888888777 33321  


Q ss_pred             CCcccccCcceEEccCCc-CCC--c-ccccCCCCCcEEEcCCCccC----CcccccCCCCCcEEEccCCccceecCCCCC
Q 018662          135 GLSNVTDTLKELYVSKNE-VPK--M-EEIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRIKVVNLCGLK  206 (352)
Q Consensus       135 ~~~~~~~~L~~L~l~~~~-~~~--~-~~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  206 (352)
                      .....+++|++|.+.+|. ++.  + .....++.|++++++++...    .......+++++.+.+....       .+.
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-------~c~  335 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-------GCP  335 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-------CCc
Confidence            222236788888877776 333  2 22456777888888877542    11123446666665543321       133


Q ss_pred             CCCEEEcCCCcCC---CC--cCccccccCcEEECCCCCCCCCC---CCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEE
Q 018662          207 CIKKISLQSNRLT---SM--KGFEECIALEELYLSHNGISKME---GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLW  278 (352)
Q Consensus       207 ~L~~L~l~~~~~~---~~--~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~  278 (352)
                      .++.+.+.+....   ..  -....++.++.+.+.++......   .+.+++.|. ..+.       .......+++.|+
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~-------~~~~~~~~l~~L~  407 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLE-------LRLCRSDSLRVLN  407 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHH-------HHhccCCccceEe
Confidence            4444444433221   11  12456777777777766533321   233334331 1110       0111112266777


Q ss_pred             cCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          279 LNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       279 l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      ++.+........ ......+..+..+++.+++
T Consensus       408 l~~~~~~t~~~l-~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  408 LSDCRLVTDKGL-RCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             cccCccccccch-HHHhhhhhccccCCccCcc
Confidence            776664332211 1111115666666666665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.88  E-value=0.0036  Score=31.07  Aligned_cols=19  Identities=53%  Similarity=0.632  Sum_probs=11.2

Q ss_pred             ccEEEcCCCCCCcchhhhh
Q 018662           48 LTELDLTANRLTSLDSRIS   66 (352)
Q Consensus        48 L~~L~l~~~~l~~l~~~~~   66 (352)
                      |++|++++|.++.+|..|.
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5566666666666665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.74  E-value=0.019  Score=26.35  Aligned_cols=14  Identities=36%  Similarity=0.496  Sum_probs=5.0

Q ss_pred             CCCeEEcCCCCCcc
Q 018662          273 RLEDLWLNDNQIES  286 (352)
Q Consensus       273 ~L~~L~l~~n~i~~  286 (352)
                      +|+.|++++|+++.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            34444444444443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.67  E-value=0.0011  Score=61.78  Aligned_cols=168  Identities=27%  Similarity=0.268  Sum_probs=85.4

Q ss_pred             CCcEEEccCCCccccc-----CCcccccCcceEEccCCcCCCc------ccccCC-CCCcEEEcCCCccCCc------cc
Q 018662          119 KLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSKNEVPKM------EEIEHF-HDLQILEFGSNRLRVM------EN  180 (352)
Q Consensus       119 ~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~------~~~~~~-~~L~~L~l~~~~l~~~------~~  180 (352)
                      .+.++.+.+|.+....     ......++|+.|++++|.+...      ..+... ..++++++..|.+...      ..
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            3777888888776532     1222366788888888887752      123333 5566677776665422      22


Q ss_pred             ccCCCCCcEEEccCCcccee-------cC----CCCCCCCEEEcCCCcCCCCc------Ccccccc-CcEEECCCCCCCC
Q 018662          181 LQNLTNLQELWLGRNRIKVV-------NL----CGLKCIKKISLQSNRLTSMK------GFEECIA-LEELYLSHNGISK  242 (352)
Q Consensus       181 ~~~~~~L~~L~l~~~~l~~~-------~~----~~~~~L~~L~l~~~~~~~~~------~~~~~~~-L~~L~l~~n~l~~  242 (352)
                      +...++++.++++.|.+...       .+    ....+++++.+.++.++...      .+...+. +..+++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            44566777777777665432       11    12344555555555444321      1222222 3335555554443


Q ss_pred             C------CCCCCC-CCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcc
Q 018662          243 M------EGLSTL-VNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIES  286 (352)
Q Consensus       243 ~------~~~~~~-~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~  286 (352)
                      .      +.+..+ ..++.+++..|.+++.      ..+..++.++++.+++|.+..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            2      123333 3445555555555432      223344455555555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.49  E-value=0.049  Score=51.16  Aligned_cols=127  Identities=23%  Similarity=0.153  Sum_probs=73.7

Q ss_pred             CCCCCcEEEccCCc-cce--e--cCCCCCCCCEEEcCCC-cC-CCC-----cCccccccCcEEECCCCC-CCCC--CCC-
Q 018662          183 NLTNLQELWLGRNR-IKV--V--NLCGLKCIKKISLQSN-RL-TSM-----KGFEECIALEELYLSHNG-ISKM--EGL-  246 (352)
Q Consensus       183 ~~~~L~~L~l~~~~-l~~--~--~~~~~~~L~~L~l~~~-~~-~~~-----~~~~~~~~L~~L~l~~n~-l~~~--~~~-  246 (352)
                      .++.|+.+.+.++. +..  .  ....++.|+.++++++ .. ...     .....+++|+.++++++. +++.  ..+ 
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            46777777776652 332  1  4456778888888763 11 111     123456777888887776 4442  221 


Q ss_pred             CCCCCCcEEEcCCCc-CCCc---ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          247 STLVNLHVLDVSSNK-LTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       247 ~~~~~L~~L~l~~n~-l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      ..+++|++|.+.++. +++.   .....++.|++|++++|....- ........+|++++.|.+.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d-~~l~~~~~~c~~l~~l~~~~~~  332 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD-SGLEALLKNCPNLRELKLLSLN  332 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH-HHHHHHHHhCcchhhhhhhhcC
Confidence            236678888876666 5443   3445677788888887764421 2233335557777776555543

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=91.61  E-value=0.37  Score=44.89  Aligned_cols=112  Identities=21%  Similarity=0.287  Sum_probs=71.7

Q ss_pred             cccccCcEEECCCCCCCCCCCC----CCCCCCcEEEcCCC--cCCCcccccC--CCCCCeEEcCCCCCcch----HHHHH
Q 018662          225 EECIALEELYLSHNGISKMEGL----STLVNLHVLDVSSN--KLTLVDDIQN--LSRLEDLWLNDNQIESL----ESIVE  292 (352)
Q Consensus       225 ~~~~~L~~L~l~~n~l~~~~~~----~~~~~L~~L~l~~n--~l~~~~~~~~--~~~L~~L~l~~n~i~~~----~~~~~  292 (352)
                      .+.|.+..+.+++|++..++.+    ...++|..|+|++|  .+.....++.  ...|++|-+.||++..-    .+.+.
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence            3567788888999888776543    35578999999999  5544433332  24689999999997642    23445


Q ss_pred             HHhccccCccEeec---cC---------CCccccccccCCccHHHHHHHHHHhhhh
Q 018662          293 AVAGSRETLTTIYL---EN---------NPQNLQIILLPSDKFSQIYSRLILMYFF  336 (352)
Q Consensus       293 ~~~~~~~~L~~L~l---~~---------n~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (352)
                      ++.+.+|+|..||=   .-         -+..++-..++.+....+...|...|+-
T Consensus       295 ~i~~~FPKL~~LDG~ev~~~~~d~~~~~~~~p~k~~ff~~~~l~~LV~~Fl~~y~~  350 (585)
T KOG3763|consen  295 AIRELFPKLLRLDGVEVQPEVIDINASETPMPCKQNFFGSEELKQLVLQFLQQYYK  350 (585)
T ss_pred             HHHHhcchheeecCcccCccccccccccCCcchhhcccCchHHHHHHHHHHHHHHH
Confidence            66677899988751   11         2233333344555566666666666553

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.53  E-value=0.0044  Score=50.85  Aligned_cols=84  Identities=21%  Similarity=0.129  Sum_probs=56.0

Q ss_pred             CCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcE
Q 018662           44 FPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSV  122 (352)
Q Consensus        44 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~  122 (352)
                      ..++.+.||++.+++..+...|+.++.|..|+++.+.+.-    .+.++.....++.++...|+.+..|. +...+++++
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~----~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKF----LPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhh----ChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence            3466777777777766666666667777777777776654    33445555666667777777776665 666777777


Q ss_pred             EEccCCCcc
Q 018662          123 FDVSFNEIT  131 (352)
Q Consensus       123 L~l~~~~~~  131 (352)
                      +++-++.+.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            777777653

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.48  E-value=0.0022  Score=59.72  Aligned_cols=186  Identities=23%  Similarity=0.248  Sum_probs=108.1

Q ss_pred             CcEEEccCCCCCCCC------CCccccCCcEEEccCCCcccccC-----Cccc-ccCcceEEccCCcCCCc------ccc
Q 018662           98 LEELILRDNKLMKIP------DVSIFKKLSVFDVSFNEITSSHG-----LSNV-TDTLKELYVSKNEVPKM------EEI  159 (352)
Q Consensus        98 L~~L~l~~~~l~~l~------~~~~~~~L~~L~l~~~~~~~~~~-----~~~~-~~~L~~L~l~~~~~~~~------~~~  159 (352)
                      +..+.+.+|.+..-.      .+...+.|..|++++|.+.....     .... -..++.|.+..|.++..      ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            667777777766422      14556777788888887763211     1111 14556666766666552      235


Q ss_pred             cCCCCCcEEEcCCCccC------Cccccc----CCCCCcEEEccCCcccee-------cCCCCCC-CCEEEcCCCcCCCC
Q 018662          160 EHFHDLQILEFGSNRLR------VMENLQ----NLTNLQELWLGRNRIKVV-------NLCGLKC-IKKISLQSNRLTSM  221 (352)
Q Consensus       160 ~~~~~L~~L~l~~~~l~------~~~~~~----~~~~L~~L~l~~~~l~~~-------~~~~~~~-L~~L~l~~~~~~~~  221 (352)
                      .....++.+++..|.+.      ....+.    ...+++++.+.++.+...       .+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            55667777777777663      111222    355677777777766544       3344444 55577777776644


Q ss_pred             ------cCcccc-ccCcEEECCCCCCCCCC------CCCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCC
Q 018662          222 ------KGFEEC-IALEELYLSHNGISKME------GLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDN  282 (352)
Q Consensus       222 ------~~~~~~-~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n  282 (352)
                            +.+..+ +.++.+++++|.+++-.      .+..++.++.+.+++|.+...      ........+..+-+.++
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~  328 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT  328 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence                  234444 56778888888776632      245556788888888877654      22333344455555544


Q ss_pred             C
Q 018662          283 Q  283 (352)
Q Consensus       283 ~  283 (352)
                      .
T Consensus       329 ~  329 (478)
T KOG4308|consen  329 G  329 (478)
T ss_pred             C
Confidence            3

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.90  E-value=0.15  Score=26.20  Aligned_cols=15  Identities=47%  Similarity=0.645  Sum_probs=6.9

Q ss_pred             CCCeEEcCCCCCcch
Q 018662          273 RLEDLWLNDNQIESL  287 (352)
Q Consensus       273 ~L~~L~l~~n~i~~~  287 (352)
                      +|+.|++++|+|+.+
T Consensus         3 ~L~~L~L~~N~l~~l   17 (26)
T smart00370        3 NLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCEEECCCCcCCcC
Confidence            344444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.90  E-value=0.15  Score=26.20  Aligned_cols=15  Identities=47%  Similarity=0.645  Sum_probs=6.9

Q ss_pred             CCCeEEcCCCCCcch
Q 018662          273 RLEDLWLNDNQIESL  287 (352)
Q Consensus       273 ~L~~L~l~~n~i~~~  287 (352)
                      +|+.|++++|+|+.+
T Consensus         3 ~L~~L~L~~N~l~~l   17 (26)
T smart00369        3 NLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCEEECCCCcCCcC
Confidence            344444444444443

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=90.19  E-value=3.3  Score=38.16  Aligned_cols=260  Identities=17%  Similarity=0.062  Sum_probs=117.7

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCC-c-chhh--hhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT-S-LDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~-~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  100 (352)
                      ..++++++.+.+..-.++.++...--++++.|..+ + +..-  -..=..+.+++++.|...+..+..........-++.
T Consensus       166 r~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~  245 (553)
T KOG4242|consen  166 RARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFK  245 (553)
T ss_pred             hhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhc
Confidence            45666666666655444444333333555566544 1 1110  112235777888887766654433333333444666


Q ss_pred             EEccCCCCC--C-CCC--CccccCCcEEEccCCCccc-----cc----CCcccccCcceEEccCCcCCC--ccc----cc
Q 018662          101 LILRDNKLM--K-IPD--VSIFKKLSVFDVSFNEITS-----SH----GLSNVTDTLKELYVSKNEVPK--MEE----IE  160 (352)
Q Consensus       101 L~l~~~~l~--~-l~~--~~~~~~L~~L~l~~~~~~~-----~~----~~~~~~~~L~~L~l~~~~~~~--~~~----~~  160 (352)
                      ++.+...+.  . +..  ....+++...+++.|....     ..    ..+..-.++ +|++.++....  +..    ..
T Consensus       246 ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla  324 (553)
T KOG4242|consen  246 LDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLA  324 (553)
T ss_pred             ccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccc
Confidence            666665544  1 112  2334466666666664432     11    112223344 55555554433  100    00


Q ss_pred             CC--CCCcEEEcCCCccC---CcccccCCCCCcEEEccCCcccee-----cCCCCCCCCEEEcCCCcCCCC---cC----
Q 018662          161 HF--HDLQILEFGSNRLR---VMENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSM---KG----  223 (352)
Q Consensus       161 ~~--~~L~~L~l~~~~l~---~~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~~---~~----  223 (352)
                      .-  ..=-.+++..|..+   .......-..++++..+.|..++.     .....++.+.+++.+..-..+   +.    
T Consensus       325 ~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~  404 (553)
T KOG4242|consen  325 ENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPP  404 (553)
T ss_pred             cccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchh
Confidence            00  00111233333332   112222223466777777665554     233345566666654322111   00    


Q ss_pred             c----cccccCcEEECCCCCCCCC-----CCCCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCc
Q 018662          224 F----EECIALEELYLSHNGISKM-----EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIE  285 (352)
Q Consensus       224 ~----~~~~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~  285 (352)
                      +    ...--+..+.++.+....-     ..+..-+.+..|++++|.....      .......+++.+..+.|..+
T Consensus       405 v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~  481 (553)
T KOG4242|consen  405 VSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE  481 (553)
T ss_pred             hhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence            0    0112244555555555432     1234456677777777776543      12223335666666666544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.07  E-value=0.067  Score=43.10  Aligned_cols=78  Identities=22%  Similarity=0.176  Sum_probs=42.2

Q ss_pred             CcEEECCCCCCCC--CCCCCCCCCCcEEEcCCCcC-CCc--cccc-CCCCCCeEEcCCCC-CcchHHHHHHHhccccCcc
Q 018662          230 LEELYLSHNGISK--MEGLSTLVNLHVLDVSSNKL-TLV--DDIQ-NLSRLEDLWLNDNQ-IESLESIVEAVAGSRETLT  302 (352)
Q Consensus       230 L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~n~l-~~~--~~~~-~~~~L~~L~l~~n~-i~~~~~~~~~~~~~~~~L~  302 (352)
                      ++.++-+++.|..  +.-+..++.++.|.+.+++- .+.  +.+. -.++|+.|++++|+ |++   ...+.+..+++|+
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~---~GL~~L~~lknLr  179 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD---GGLACLLKLKNLR  179 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech---hHHHHHHHhhhhH
Confidence            4455555544432  33445555666666666542 222  2222 34677777777765 554   2234455667777


Q ss_pred             EeeccCCC
Q 018662          303 TIYLENNP  310 (352)
Q Consensus       303 ~L~l~~n~  310 (352)
                      .|.+.+=|
T Consensus       180 ~L~l~~l~  187 (221)
T KOG3864|consen  180 RLHLYDLP  187 (221)
T ss_pred             HHHhcCch
Confidence            77777665

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.31  E-value=0.16  Score=41.01  Aligned_cols=64  Identities=17%  Similarity=0.326  Sum_probs=48.1

Q ss_pred             CCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCC-CcchHHHHHHHhccccCccEeeccCCCccccccccC
Q 018662          251 NLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQ-IESLESIVEAVAGSRETLTTIYLENNPQNLQIILLP  319 (352)
Q Consensus       251 ~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  319 (352)
                      .++.++-++..|..+  +.+..++.++.|.+.+|. +.++  .+..+....++|+.|+|++||   .|++..
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~--~L~~l~~~~~~L~~L~lsgC~---rIT~~G  168 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDW--CLERLGGLAPSLQDLDLSGCP---RITDGG  168 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhH--HHHHhcccccchheeeccCCC---eechhH
Confidence            478899999988655  778899999999999998 3322  223334456999999999999   664444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.48  E-value=0.57  Score=23.43  Aligned_cols=15  Identities=47%  Similarity=0.559  Sum_probs=8.0

Q ss_pred             CCCCeEEcCCCCCcc
Q 018662          272 SRLEDLWLNDNQIES  286 (352)
Q Consensus       272 ~~L~~L~l~~n~i~~  286 (352)
                      ++|+.|++++|.|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            456666666666654

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.74  E-value=0.023  Score=46.74  Aligned_cols=85  Identities=16%  Similarity=0.121  Sum_probs=47.8

Q ss_pred             hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCc
Q 018662           65 ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTL  143 (352)
Q Consensus        65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  143 (352)
                      +..+...+.|+++.+++..    .-..|+.++.|..|+++.+.+.-+|. +.....+++++...|.....+-.....+++
T Consensus        38 i~~~kr~tvld~~s~r~vn----~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN----LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP  113 (326)
T ss_pred             hhccceeeeehhhhhHHHh----hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence            4455566666666665544    22334455566666666666665554 555555666666666555555444445566


Q ss_pred             ceEEccCCcC
Q 018662          144 KELYVSKNEV  153 (352)
Q Consensus       144 ~~L~l~~~~~  153 (352)
                      ++++..++.+
T Consensus       114 k~~e~k~~~~  123 (326)
T KOG0473|consen  114 KKNEQKKTEF  123 (326)
T ss_pred             chhhhccCcc
Confidence            6666655553

>TIGR00864 PCC polycystin cation channel protein

Probab=85.19  E-value=0.62  Score=51.67  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=30.9

Q ss_pred             EcCCCCCcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662          278 WLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQII  316 (352)
Q Consensus       278 ~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  316 (352)
                      ||++|+|+.++.   ..+..+++|+.|+|++|||.|+|.
T Consensus         1 DLSnN~LstLp~---g~F~~L~sL~~LdLsgNPw~CDC~   36 (2740)
T TIGR00864         1 DISNNKISTIEE---GICANLCNLSEIDLSGNPFECDCG   36 (2740)
T ss_pred             CCCCCcCCccCh---HHhccCCCceEEEeeCCccccccc
Confidence            588999998874   466778999999999999999993

Note: this model has been restricted to the amino half because for technical reasons.

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.02  E-value=0.63  Score=23.97  Aligned_cols=18  Identities=44%  Similarity=0.656  Sum_probs=10.8

Q ss_pred             CcccEEEcCCCCCCcchh
Q 018662           46 TNLTELDLTANRLTSLDS   63 (352)
Q Consensus        46 ~~L~~L~l~~~~l~~l~~   63 (352)
                      ++|++|++++|+++++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            455666666666666554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.05  E-value=0.76  Score=23.73  Aligned_cols=17  Identities=41%  Similarity=0.661  Sum_probs=11.1

Q ss_pred             CCCCeEEcCCCCCcchH
Q 018662          272 SRLEDLWLNDNQIESLE  288 (352)
Q Consensus       272 ~~L~~L~l~~n~i~~~~  288 (352)
                      .+|+.|++++|+|+.++
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            45667777777776554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.47  E-value=1.8  Score=22.69  Aligned_cols=15  Identities=27%  Similarity=0.468  Sum_probs=9.8

Q ss_pred             CCCCeEEcCCCCCcc
Q 018662          272 SRLEDLWLNDNQIES  286 (352)
Q Consensus       272 ~~L~~L~l~~n~i~~  286 (352)
                      ++|++|++++|.|..
T Consensus         2 ~~L~~LdL~~N~i~~   16 (28)
T smart00368        2 PSLRELDLSNNKLGD   16 (28)
T ss_pred             CccCEEECCCCCCCH
Confidence            356677777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	352
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-14
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		8e-07
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-14
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		8e-07
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-14
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		5e-07
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		6e-13
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-13
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		9e-13
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		9e-13
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		3e-11
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		1e-06
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		5e-09
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		5e-09
1ds9_A	198	Solution Structure Of Chlamydomonas Outer Arm Dynei		7e-07
1m9l_A	199	Relaxation-Based Refined Structure Of Chlamydomonas		7e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		7e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		9e-06
4aw4_A	311	Engineered Variant Of Listeria Monocytogenes Inlb I		1e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-05
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		8e-05
1xeu_A	263	Crystal Structure Of Internalin C From Listeria Mon		2e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		2e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		7e-04
1otm_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		9e-04
1otn_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		9e-04
1oto_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		9e-04

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 14/268 (5%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 44  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L  S N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 154 QQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 214 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 273
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
           + +  +  L+ L +L LN+NQ+E +  I
Sbjct: 274 SNISPLAGLTALTNLELNENQLEDISPI 301

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 135 GLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXX 186
           G +NVTDT+ +        L   +  +  ++ +E+ ++L  + F +N+L  +        
Sbjct: 27  GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTK 86
Query: 187 XXXXXXGRNRIK-VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG 245
                   N+I  +  L  L  +  ++L +N++T +   +    L  L LS N IS +  
Sbjct: 87  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 146
Query: 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVE 292
           LS L +L  L  SSN++T +  + NL+ LE L ++ N++  +  + +
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 193

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 14/268 (5%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 44  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L  S N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 154 QQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 214 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 273
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
           + +  +  L+ L +L LN+NQ+E +  I
Sbjct: 274 SNISPLAGLTALTNLELNENQLEDISPI 301

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 135 GLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXX 186
           G +NVTDT+ +        L   +  +  ++ +E+ ++L  + F +N+L  +        
Sbjct: 27  GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTK 86
Query: 187 XXXXXXGRNRIK-VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG 245
                   N+I  +  L  L  +  ++L +N++T +   +    L  L LS N IS +  
Sbjct: 87  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 146
Query: 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVE 292
           LS L +L  L  SSN++T +  + NL+ LE L ++ N++  +  + +
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 193

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 14/268 (5%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 44  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L  S N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 154 QQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 214 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 273
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
           + +  +  L+ L +L LN+NQ+E +  I
Sbjct: 274 SNISPLAGLTALTNLELNENQLEDISPI 301

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 135 GLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXX 186
           G +NVTDT+ +        L   +  +  ++ +E+ ++L  + F +N+L  +        
Sbjct: 27  GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTK 86
Query: 187 XXXXXXGRNRIK-VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG 245
                   N+I  +  L  L  +  ++L +N++T +   +    L  L LS N IS +  
Sbjct: 87  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 146
Query: 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVE 292
           LS L +L  L+ SSN++T +  + NL+ LE L ++ N++  +  + +
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 193

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 15/268 (5%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 49  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 104
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 105 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 158
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L    N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 159 QQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 217
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 277
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
           + +  +  L+ L +L LN+NQ+E +  I
Sbjct: 278 SNISPLAGLTALTNLELNENQLEDISPI 305

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 15/268 (5%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 48  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 103
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 104 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 157
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L    N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 158 QQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 216
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 217 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 276
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
           + +  +  L+ L +L LN+NQ+E +  I
Sbjct: 277 SNISPLAGLTALTNLELNENQLEDISPI 304

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 15/268 (5%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 44  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L    N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 154 QQLNFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 212
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 213 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 272
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
           + +  +  L+ L +L LN+NQ+E +  I
Sbjct: 273 SNISPLAGLTALTNLELNENQLEDISPI 300

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 15/268 (5%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 44  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L    N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 154 QQLNFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 212
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 213 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 272
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
           + +  +  L+ L +L LN+NQ+E +  I
Sbjct: 273 SNISPLAGLTALTNLELNENQLEDISPI 300

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 20/281 (7%)
Query: 35  QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL-IDDAAIEPISRWD 93
           ++  +  +E+ TNL  L+L  N++T     IS LSNL KL+   NL I    I  IS   
Sbjct: 55  KVASIQGIEYLTNLEYLNLNGNQITD----ISPLSNLVKLT---NLYIGTNKITDISALQ 107
Query: 94  ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNE-ITSSHGLSNVTDTLKELYVSKNE 152
            L  L EL L ++ +  I  ++   K    ++  N  ++    LSN T  L  L V++++
Sbjct: 108 NLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTG-LNYLTVTESK 166
Query: 153 VPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI----KVVNLCGLKCI 208
           V  +  I +  DL  L    N++  +                N+I     V N   L  +
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSL 226
Query: 209 KKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDI 268
           K   + +N++T +        L  L +  N IS +  +  L  L  L+V SN+++ +  +
Sbjct: 227 K---IGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVL 283
Query: 269 QNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
            NLS+L  L+LN+NQ+ + +     V G    LTT++L  N
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDX---EVIGGLTNLTTLFLSQN 321

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264
           L+ I K+ +   ++ S++G E    LE L L+ N I+ +  LS LV L  L + +NK+T 
Sbjct: 43  LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD 102
Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIV 291
           +  +QNL+ L +L+LN++ I  +  + 
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISPLA 129

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 128 NEITSSHGLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMX 179
           N I  + G SNVTDT+ +        L      V  +E +++ ++L  LE   N++  + 
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA 79
Query: 180 XXXXXXXXXXXXXGRNRIKVVN-LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN 238
                          N +K V+ + GL+ IK + L S ++T +        L+ LYL  N
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139
Query: 239 GISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
            I+ +  L+ L NL  L + + +++ +  + NLS+L  L  +DN+I  +  +      S 
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL-----ASL 194
Query: 299 ETLTTIYLENN 309
             L  ++L+NN
Sbjct: 195 PNLIEVHLKNN 205

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 128 NEITSSHGLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMX 179
           N + ++ G SNVTD + +        L      V  +E I++ ++L  LE   N++  + 
Sbjct: 26  NAVKTATGKSNVTDAVTQADLDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLT 85
Query: 180 XXXXXXXXXXXXXGRNRIKVVN-LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN 238
                          N +K V+ + GL+ IK + L S ++T +        L+ LYL  N
Sbjct: 86  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 145
Query: 239 GISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
            I+ +  L+ L NL  L + +N++  +  + NLS+L  L  +DN+I  +  +      S 
Sbjct: 146 QITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDISPL-----ASL 200
Query: 299 ETLTTIYLENN 309
             L  ++L++N
Sbjct: 201 PNLIEVHLKDN 211

>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 198

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 198 KVVNLCGLKCIKKISLQSNRLTSMKGFEECI-ALEELYLSHNGISKMEGLSTLVNLHVLD 256
           K+ +L G++ ++ +SL  N +  ++  +     LEEL++S+N I+ + G+  LVNL VL 
Sbjct: 62  KISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121
Query: 257 VSSNKLT---LVDDIQNLSRLEDLWLNDNQI 284
           +S+NK+T    +D +  L +LEDL L  N +
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 199

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 198 KVVNLCGLKCIKKISLQSNRLTSMKGFEECI-ALEELYLSHNGISKMEGLSTLVNLHVLD 256
           K+ +L G++ ++ +SL  N +  ++  +     LEEL++S+N I+ + G+  LVNL VL 
Sbjct: 63  KISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 122
Query: 257 VSSNKLT---LVDDIQNLSRLEDLWLNDNQI 284
           +S+NK+T    +D +  L +LEDL L  N +
Sbjct: 123 MSNNKITNWGEIDKLAALDKLEDLLLAGNPL 153

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 9/130 (6%)
Query: 29  LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIE 87
           L L   +LHD+ +++  TNLT L LT N+L SL + +   L+NLK+L L +N +      
Sbjct: 68  LALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL--- 124
Query: 88  PISRWDALAGLEELILRDNKLMKIPDVSIFKK---LSVFDVSFNEITS-SHGLSNVTDTL 143
           P   +D L  L  L L  N+L  +P   +F K   L+  D+S+N++ S   G+ +    L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 144 KELYVSKNEV 153
           K+L + +N++
Sbjct: 184 KDLRLYQNQL 193

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 23/204 (11%)
Query: 117 FKKLSVFD-VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL 175
            KK SV D V+ NE+ S          + ++  + +++  ++ I++  +++ L  G N+L
Sbjct: 26  LKKKSVTDAVTQNELNS----------IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL 75
Query: 176 RVMXXXXXXXXXXXXXXGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIAL 230
             +                N+++ +       L  +K++ L  N+L S+    F++   L
Sbjct: 76  HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIES 286
             LYL HN +  +       L NL  LD+ +N+L  + +     L++L+ L LNDNQ   
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ--- 192
Query: 287 LESIVEAVAGSRETLTTIYLENNP 310
           L+S+ + V     +LT I+L NNP
Sbjct: 193 LKSVPDGVFDRLTSLTHIWLLNNP 216

>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin Domain With An Additional Leucine Rich Repeat Inserted Length = 311

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 19/163 (11%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI----- 81
           T L+L++ Q+ D+  +++  N+T+L L  N+LT +   +++L NL  L L +N +     
Sbjct: 69  TSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSS 127
Query: 82  ------------DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNE 129
                       +   I  I+    L  LE L L +NK+  I  +S   KL    +  N+
Sbjct: 128 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 187
Query: 130 ITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
           I+    L+ +T  L+ LY+SKN +  +  +    +L +LE  S
Sbjct: 188 ISDIVPLAGLT-KLQNLYLSKNHISDLRALAGLKNLDVLELFS 229

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 151/341 (44%), Gaps = 53/341 (15%)
Query: 9   PSAEATNPDQAV------------EIDLSNTVLDLTSFQLHDLDSVEFPT--NLTELDLT 54
           P  E +  D+AV             I     +LDL   ++  L+  EF +  +L EL+L 
Sbjct: 5   PRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELN 64
Query: 55  ANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD 113
            N +++++    ++L NL+ L LR N +    + P+  +  L+ L +L + +NK++ + D
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSNRLK---LIPLGVFTGLSNLTKLDISENKIVILLD 121
Query: 114 VSI--FKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQIL 168
                   L   +V  N++   SH   +  ++L++L + K  +  +  E + H H L +L
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181
Query: 169 EFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLK--------CIKKISLQSNRLTS 220
                RLR +                 R+KV+ +            C+  ++L S  +T 
Sbjct: 182 -----RLRHLNINAIRDYSFKRLY---RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233
Query: 221 MK-------GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQ 269
                         + L  L LS+N IS +EG  L  L+ L  + +   +L +V+    +
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293
Query: 270 NLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
            L+ L  L ++ NQ+ +LE   E+V  S   L T+ L++NP
Sbjct: 294 GLNYLRVLNVSGNQLTTLE---ESVFHSVGNLETLILDSNP 331

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 28/175 (16%)
Query: 29  LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISH-LSNLKKLSLRQN-------- 79
           +D +S +L  + S   P +  +LDL +N+L+SL S+  H L+ L+ L L  N        
Sbjct: 21  VDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79
Query: 80  -----------LIDDAAIE--PISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD 124
                       + D  ++  PI  +D L  L EL L  N+L  +P        KL+   
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 125 VSFNEITS-SHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLR 176
           + +NE+ S   G+ +   +LKEL +  N++ ++ E   +   +L+ L+  +N+L+
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIES 286
           + L+L++N I+K+E      LVNL  L  +SNKLT +       L++L  L LNDN    
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH--- 92
Query: 287 LESIVEAVAGSRETLTTIYLENNPQNLQI 315
           L+SI      + ++LT IYL NNP + + 
Sbjct: 93  LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121

>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria Monocytogenes Length = 263

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 36  LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQN---------------- 79
           +  L  ++F TNL EL L+ N+++ L S +  L+ L++LS+ +N                
Sbjct: 53  IQSLAGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL 111
Query: 80  LIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLS 137
            +D+  +        L  LE L +R+NKL  I  +    KL V D+  NEIT++ GL+
Sbjct: 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLT 169

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 134/315 (42%), Gaps = 48/315 (15%)
Query: 29  LDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           L+L   +  D+ S  F   T L ELDLTA  L  L S +  L+ LKKL L  N  D    
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQ 315
Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITSSHGLS----NV 139
              + + +L     L +R N       V   +KL      D+S N+I +S   S    N+
Sbjct: 316 ISAANFPSLT---HLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 140 TDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI 197
           +  L+ L +S NE   ++    +    L++L+    RL +                 + +
Sbjct: 373 SH-LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHI-------NAPQSPFQNLHFL 424
Query: 198 KVVN-------------LCGLKCIKKISLQSNR-----LTSMKGFEECIALEELYLSHNG 239
           +V+N             L GL  ++ ++L+ N      +T     +   +LE L LS  G
Sbjct: 425 QVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCG 484
Query: 240 ISKM--EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLN--DNQIESLESIVEAVA 295
           +  +  +   +L  +  +D+S N LT  D I +LS L+ ++LN   N I  +   +  + 
Sbjct: 485 LLSIDQQAFHSLGKMSHVDLSHNSLT-CDSIDSLSHLKGIYLNLAANSINIISPRLLPIL 543
Query: 296 GSRETLTTIYLENNP 310
             +   +TI L +NP
Sbjct: 544 SQQ---STINLSHNP 555

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 133/297 (44%), Gaps = 48/297 (16%)
Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
           + L ELDLTA  L+ L S +  LS LKKL L  N  ++      S + +L  L   I  +
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS--IKGN 335
Query: 106 NKLMKIPDVSI--FKKLSVFDVSFNEITSSHG----LSNVTDTLKELYVSKNEVP---KM 156
            K +++    +   + L   D+S ++I +S      L N++  L+ L +S NE P   K 
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH-LQSLNLSYNE-PLSLKT 393
Query: 157 EEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC------------- 203
           E  +    L++L+    RL+V                 + +KV+NL              
Sbjct: 394 EAFKECPQLELLDLAFTRLKV-------KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446
Query: 204 GLKCIKKISLQSNR-----LTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLD 256
           GL  ++ ++LQ N      +      +    LE L LS   +S ++    ++L  ++ +D
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506
Query: 257 VSSNKLTLVDDIQNLSRLEDLWLN--DNQIE-SLESIVEAVAGSRETLTTIYLENNP 310
           +S N+LT    I+ LS L+ ++LN   N I   L S++  ++  R    TI L  NP
Sbjct: 507 LSHNRLT-SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQR----TINLRQNP 558

>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 36  LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-------------- 81
           +  +  +++  N+T+L L  N+LT +   +++L NL  L L +N I              
Sbjct: 76  IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 134
Query: 82  ---DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
              +   I  I+    L  LE L L +NK+  I  +S   KL    +  N+I+    L+ 
Sbjct: 135 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 194
Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
           +T  L+ LY+SKN +  +  +    +L +LE  S
Sbjct: 195 LTK-LQNLYLSKNHISDLRALAGLKNLDVLELFS 227

>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 19/149 (12%)
Query: 41  SVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-----------------DD 83
            +++  N+T+L L  N+LT +   +++L NL  L L +N I                 + 
Sbjct: 81  GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I  I+    L  LE L L +NK+  I  +S   KL    +  N+I+    L+ +T  L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT-KL 198
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGS 172
           + LY+SKN +  +  +    +L +LE  S
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDVLELFS 227

>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 19/149 (12%)
Query: 41  SVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-----------------DD 83
            +++  N+T+L L  N+LT +   +++L NL  L L +N I                 + 
Sbjct: 81  GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I  I+    L  LE L L +NK+  I  +S   KL    +  N+I+    L+ +T  L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT-KL 198
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGS 172
           + LY+SKN +  +  +    +L +LE  S
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDVLELFS 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-66
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-50
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-55
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-50
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-50
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-31
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-49
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-48
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-28
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-46
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-41
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-38
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-43
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-34
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-38
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-34
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-32
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-30
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-32
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-30
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-30
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-30
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-29
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-18
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-17
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-14
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  210 bits (538), Expect = 6e-66
 Identities = 75/286 (26%), Positives = 139/286 (48%), Gaps = 12/286 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T L +   ++  +  +E+ TNL  L+L  N++T +   +S+L  L  L +  N I D  I
Sbjct: 47  TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD--I 103

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSS-HGLSNVTDTLKE 145
             +     L  L EL L ++ +  I  ++   K+   ++  N   S    LSN+T  L  
Sbjct: 104 SALQ---NLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMT-GLNY 159

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCG 204
           L V++++V  +  I +  DL  L    N++  +  L +LT+L       N+I  +  +  
Sbjct: 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVAN 219

Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264
           +  +  + + +N++T +        L  L +  N IS +  +  L  L +L+V SN+++ 
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD 279

Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           +  + NLS+L  L+LN+NQ+ +    +E + G    LTT++L  N 
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNE--DMEVI-GGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  170 bits (432), Expect = 4e-50
 Identities = 60/285 (21%), Positives = 121/285 (42%), Gaps = 14/285 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             L      ++ +             L    +T + +    L ++ KL +    +    I
Sbjct: 3   ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVAS--I 59

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
           + I     L  LE L L  N++  I  +S   KL+   +  N+IT    L N+T  L+EL
Sbjct: 60  QGIEY---LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLT-NLREL 115

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRL-RVMENLQNLTNLQELWLGRNRIKVV-NLCG 204
           Y++++ +  +  + +   +  L  G+N     +  L N+T L  L +  +++K V  +  
Sbjct: 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIAN 175

Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264
           L  +  +SL  N++  +       +L       N I+ +  ++ +  L+ L + +NK+T 
Sbjct: 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD 235

Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
           +  + NLS+L  L +  NQI  + ++          L  + + +N
Sbjct: 236 LSPLANLSQLTWLEIGTNQISDINAV-----KDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  158 bits (401), Expect = 1e-45
 Identities = 57/262 (21%), Positives = 130/262 (49%), Gaps = 9/262 (3%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T L + + ++ D+ +++  TNL EL L  + ++ +   +++L+ +  L+L  N      +
Sbjct: 91  TNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHN----L 145

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             +S    + GL  L + ++K+  +  ++    L    +++N+I     L+++T  L   
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS-LHYF 204

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGL 205
               N++  +  + +   L  L+ G+N++  +  L NL+ L  L +G N+I  +  +  L
Sbjct: 205 TAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDL 264

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK--MEGLSTLVNLHVLDVSSNKLT 263
             +K +++ SN+++ +        L  L+L++N +    ME +  L NL  L +S N +T
Sbjct: 265 TKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 264 LVDDIQNLSRLEDLWLNDNQIE 285
            +  + +LS+++     +  I+
Sbjct: 325 DIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  143 bits (364), Expect = 4e-40
 Identities = 48/241 (19%), Positives = 108/241 (44%), Gaps = 13/241 (5%)

Query: 71  LKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEI 130
              L+     I+   I P +    LA     +L+   +  +      + ++   V+  ++
Sbjct: 2   AATLATLPAPINQ--IFPDA---DLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKV 56

Query: 131 TSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQEL 190
            S  G+  +T+ L+ L ++ N++  +  + +   L  L  G+N++  +  LQNLTNL+EL
Sbjct: 57  ASIQGIEYLTN-LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLREL 115

Query: 191 WLGRNRIKVV-NLCGLKCIKKISLQSNRLTS-MKGFEECIALEELYLSHNGISKMEGLST 248
           +L  + I  +  L  L  +  ++L +N   S +        L  L ++ + +  +  ++ 
Sbjct: 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIAN 175

Query: 249 LVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN 308
           L +L+ L ++ N++  +  + +L+ L       NQI  +  +      +   L ++ + N
Sbjct: 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPV-----ANMTRLNSLKIGN 230

Query: 309 N 309
           N
Sbjct: 231 N 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (330), Expect = 3e-35
 Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 8/215 (3%)

Query: 97  GLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM 156
           G   L      + +I   +   +     +    +T       +  ++ +L V+  +V  +
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELE-SITKLVVAGEKVASI 59

Query: 157 EEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQS 215
           + IE+  +L+ L    N++  +  L NL  L  L++G N+I  +  L  L  ++++ L  
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNE 119

Query: 216 NRLTSMKGFEECIALEELYLSHN-GISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRL 274
           + ++ +        +  L L  N  +S +  LS +  L+ L V+ +K+  V  I NL+ L
Sbjct: 120 DNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDL 179

Query: 275 EDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
             L LN NQIE +  +      S  +L       N
Sbjct: 180 YSLSLNYNQIEDISPL-----ASLTSLHYFTAYVN 209

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (316), Expect = 3e-33
 Identities = 52/220 (23%), Positives = 103/220 (46%), Gaps = 11/220 (5%)

Query: 27  TVLDLTSFQL-HDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAA 85
             L+L +     DL  +   T L  L +T +++  +   I++L++L  LSL  N I+D  
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED-- 191

Query: 86  IEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKE 145
           I P++    L  L       N++  I  V+   +L+   +  N+IT    L+N++  L  
Sbjct: 192 ISPLAS---LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQ-LTW 247

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN---L 202
           L +  N++  +  ++    L++L  GSN++  +  L NL+ L  L+L  N++   +   +
Sbjct: 248 LEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVI 307

Query: 203 CGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK 242
            GL  +  + L  N +T ++       ++    ++  I K
Sbjct: 308 GGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIKK 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  185 bits (473), Expect = 4e-55
 Identities = 78/284 (27%), Positives = 143/284 (50%), Gaps = 14/284 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T L      +  +D VE+  NLT+++ + N+LT +   + +L+ L  + +  N I D  I
Sbjct: 49  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD--I 105

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
            P++    L  L  L L +N++  I  +     L+  ++S N I+    LS +T +L++L
Sbjct: 106 TPLAN---LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQL 161

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGL 205
               N+V  ++ + +   L+ L+  SN++  +  L  LTNL+ L    N+I  +  L  L
Sbjct: 162 SFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 220

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV 265
             + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N+++ +
Sbjct: 221 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI 280

Query: 266 DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
             +  L+ L +L LN+NQ+E +  I      + + LT + L  N
Sbjct: 281 SPLAGLTALTNLELNENQLEDISPI-----SNLKNLTYLTLYFN 319

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  174 bits (444), Expect = 7e-51
 Identities = 77/301 (25%), Positives = 142/301 (47%), Gaps = 18/301 (5%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T L L + Q+ D+D ++  TNL  L+L++N ++ + + +S L++L++LS    + D   +
Sbjct: 115 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTD---L 170

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
           +P++    L  LE L +  NK+  I  ++    L     + N+I+    L  +T  L EL
Sbjct: 171 KPLAN---LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT-NLDEL 226

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGL 205
            ++ N++  +  +    +L  L+  +N++  +  L  LT L EL LG N+I  +  L GL
Sbjct: 227 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL 286

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV 265
             +  + L  N+L  +        L  L L  N IS +  +S+L  L  L   +NK++ V
Sbjct: 287 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 346

Query: 266 DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQ 325
             + NL+ +  L    NQI  L  +      +   +T + L +          P +  + 
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTPL-----ANLTRITQLGLNDQ----AWTNAPVNYKAN 397

Query: 326 I 326
           +
Sbjct: 398 V 398

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  172 bits (437), Expect = 9e-50
 Identities = 69/285 (24%), Positives = 142/285 (49%), Gaps = 14/285 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             + + + Q+ D+  +   TNLT L L  N++T +D  + +L+NL +L L  N I D  I
Sbjct: 93  VDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD--I 149

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             +S    L  L++L    N++  +  ++    L   D+S N+++    L+ +T  L+ L
Sbjct: 150 SALSG---LTSLQQLSF-GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT-NLESL 204

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGL 205
             + N++  +  +    +L  L    N+L+ +  L +LTNL +L L  N+I  +  L GL
Sbjct: 205 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 264

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV 265
             + ++ L +N+++++       AL  L L+ N +  +  +S L NL  L +  N ++ +
Sbjct: 265 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 324

Query: 266 DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
             + +L++L+ L+  +N++  + S+      +   +  +   +N 
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSDVSSL-----ANLTNINWLSAGHNQ 364

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  172 bits (437), Expect = 9e-50
 Identities = 64/275 (23%), Positives = 123/275 (44%), Gaps = 12/275 (4%)

Query: 35  QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDA 94
            ++ + +        +  L    +T   S  + L  +  L   +  I    I+ +     
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKS--IDGVEY--- 66

Query: 95  LAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP 154
           L  L ++   +N+L  I  +    KL    ++ N+I     L+N+T  L  L +  N++ 
Sbjct: 67  LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQIT 125

Query: 155 KMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQ 214
            ++ +++  +L  LE  SN +  +  L  LT+LQ+L  G     +  L  L  ++++ + 
Sbjct: 126 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185

Query: 215 SNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRL 274
           SN+++ +    +   LE L  ++N IS +  L  L NL  L ++ N+L  +  + +L+ L
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 245

Query: 275 EDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
            DL L +NQI +L  +          LT + L  N
Sbjct: 246 TDLDLANNQISNLAPL-----SGLTKLTELKLGAN 275

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (310), Expect = 1e-31
 Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             LD++S ++ D+  +   TNL  L  T N+++ +   +  L+NL +LSL  N + D  I
Sbjct: 180 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--I 236

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             ++    L  L +L L +N++  +  +S   KL+   +  N+I++   L+ +T  L  L
Sbjct: 237 GTLAS---LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT-ALTNL 292

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN-LCGL 205
            +++N++  +  I +  +L  L    N +  +  + +LT LQ L+   N++  V+ L  L
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 352

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM---------------------- 243
             I  +S   N+++ +        + +L L+    +                        
Sbjct: 353 TNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

Query: 244 --EGLSTLVNLHVLDVSSNKLTLVDDI 268
               +S   +    D++ N  +  +++
Sbjct: 413 APATISDGGSYTEPDITWNLPSYTNEV 439

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  172 bits (436), Expect = 8e-49
 Identities = 48/214 (22%), Positives = 105/214 (49%), Gaps = 7/214 (3%)

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           + E I     + +I     F +    ++    +T +   + +  ++ ++  + +++  ++
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELN-SIDQIIANNSDIKSVQ 59

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            I++  ++  L    N+L  ++ L NL NL  L+L  N+I  + +L  LK +K +SL+ N
Sbjct: 60  GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN 119

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
            ++ + G      LE LYL +N I+ +  LS L  L  L +  N+++ +  +  L++L++
Sbjct: 120 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 179

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           L+L+ N I  L ++        + L  + L +  
Sbjct: 180 LYLSKNHISDLRAL-----AGLKNLDVLELFSQE 208

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  169 bits (430), Expect = 7e-48
 Identities = 49/246 (19%), Positives = 111/246 (45%), Gaps = 10/246 (4%)

Query: 48  LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNK 107
           + E    +  +  +       +   K +L++  + D         + L  ++++I  ++ 
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTD-----AVTQNELNSIDQIIANNSD 54

Query: 108 LMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQI 167
           +  +  +     ++   ++ N++T    L+N+ + L  L++ +N++  +  ++    L+ 
Sbjct: 55  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKN-LGWLFLDENKIKDLSSLKDLKKLKS 113

Query: 168 LEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEE 226
           L    N +  +  L +L  L+ L+LG N+I  +  L  L  +  +SL+ N+++ +     
Sbjct: 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 173

Query: 227 CIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL--VDDIQNLSRLEDLWLNDNQI 284
              L+ LYLS N IS +  L+ L NL VL++ S +     ++   NL     +   D  +
Sbjct: 174 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

Query: 285 ESLESI 290
            + E I
Sbjct: 234 VTPEII 239

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  115 bits (288), Expect = 2e-28
 Identities = 53/317 (16%), Positives = 109/317 (34%), Gaps = 16/317 (5%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             +   +  +  +  +++  N+T+L L  N+LT +   +++L NL  L L +N I D  +
Sbjct: 46  DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKD--L 102

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             +     L  L+ L L  N +  I  +    +L    +  N+IT    LS +T  L  L
Sbjct: 103 SSLK---DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTL 158

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI---KVVNLC 203
            +  N++  +  +     LQ L    N +  +  L  L NL  L L         + +  
Sbjct: 159 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQS 218

Query: 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDV------ 257
            L     +      L + +   +    E+  +  +       +S +    V         
Sbjct: 219 NLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

Query: 258 SSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIIL 317
                  + ++  +S   D  +   ++E+   I      +++                  
Sbjct: 279 HGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWN 338

Query: 318 LPSDKFSQIYSRLILMY 334
             +D  S     L  ++
Sbjct: 339 FNTDYMSGNDFTLYAVF 355

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  157 bits (400), Expect = 4e-46
 Identities = 47/212 (22%), Positives = 104/212 (49%), Gaps = 7/212 (3%)

Query: 100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI 159
           E I     + +I     F +    ++    +T +   + +  ++ ++  + +++  ++ I
Sbjct: 6   ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN-SIDQIIANNSDIKSVQGI 64

Query: 160 EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSNRL 218
           ++  ++  L    N+L  ++ L NL NL  L+L  N++  + +L  LK +K +SL+ N +
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 219 TSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLW 278
           + + G      LE LYL +N I+ +  LS L  L  L +  N+++ +  +  L++L++L+
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184

Query: 279 LNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           L+ N I  L ++        + L  + L +  
Sbjct: 185 LSKNHISDLRALAGL-----KNLDVLELFSQE 211

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  144 bits (364), Expect = 8e-41
 Identities = 49/258 (18%), Positives = 106/258 (41%), Gaps = 32/258 (12%)

Query: 36  LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           +  + S +      + +L    +T         + L                        
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTD----AVTQNELNS---------------------- 47

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155
             ++++I  ++ +  +  +     ++   ++ N++T    L+N+   L  L++ +N+V  
Sbjct: 48  --IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLK-NLGWLFLDENKVKD 104

Query: 156 MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQ 214
           +  ++    L+ L    N +  +  L +L  L+ L+LG N+I  +  L  L  +  +SL+
Sbjct: 105 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 164

Query: 215 SNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL--VDDIQNLS 272
            N+++ +        L+ LYLS N IS +  L+ L NL VL++ S +     ++   NL 
Sbjct: 165 DNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 273 RLEDLWLNDNQIESLESI 290
               +   D  + + E I
Sbjct: 225 VPNTVKNTDGSLVTPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  137 bits (348), Expect = 2e-38
 Identities = 42/212 (19%), Positives = 95/212 (44%), Gaps = 2/212 (0%)

Query: 78  QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLS 137
           + +     I+ I   DA A   +  L+   +      +    +     + ++I S  G+ 
Sbjct: 6   ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ 65

Query: 138 NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
            + + + +L+++ N++  ++ + +  +L  L    N+++ + +L++L  L+ L L  N I
Sbjct: 66  YLPN-VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 198 KVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLD 256
             +  L  L  ++ + L +N++T +        L+ L L  N IS +  L+ L  L  L 
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184

Query: 257 VSSNKLTLVDDIQNLSRLEDLWLNDNQIESLE 288
           +S N ++ +  +  L  L+ L L   +  +  
Sbjct: 185 LSKNHISDLRALAGLKNLDVLELFSQECLNKP 216

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  153 bits (389), Expect = 2e-44
 Identities = 55/252 (21%), Positives = 105/252 (41%), Gaps = 13/252 (5%)

Query: 65  ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFD 124
              L+N  K++  ++ + D      +    L G+  L      +  I  V     L   +
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQAD---LDGITTLSAFGTGVTTIEGVQYLNNLIGLE 69

Query: 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL 184
           +  N+IT    L N+T  + EL +S N +  +  I     ++ L+  S ++  +  L  L
Sbjct: 70  LKDNQITDLAPLKNLTK-ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 185 TNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM 243
           +NLQ L+L  N+I  +  L GL  ++ +S+ + +++ +        L  L    N IS +
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 244 EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT 303
             L++L NL  + + +N+++ V  + N S L  + L +  I +              L  
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFY------NNNLVV 242

Query: 304 IYLENNPQNLQI 315
             +   P    I
Sbjct: 243 PNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  152 bits (387), Expect = 6e-44
 Identities = 44/233 (18%), Positives = 97/233 (41%), Gaps = 7/233 (3%)

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
           ++    AI  I    ALA   ++    + +      +    ++        +T+  G+  
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQY 61

Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK 198
           +   L  L +  N++  +  +++   +  LE   N L+ +  +  L +++ L L   +I 
Sbjct: 62  LN-NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 199 -VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDV 257
            V  L GL  ++ + L  N++T++        L+ L + +  +S +  L+ L  L  L  
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 258 SSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
             NK++ +  + +L  L ++ L +NQI  +  +      +   L  + L N  
Sbjct: 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSPL-----ANTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  150 bits (381), Expect = 3e-43
 Identities = 44/255 (17%), Positives = 108/255 (42%), Gaps = 8/255 (3%)

Query: 35  QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDA 94
            ++ +       N  ++    + +T   +  + L  +  LS     +    IE +     
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTT--IEGVQ---Y 61

Query: 95  LAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP 154
           L  L  L L+DN++  +  +    K++  ++S N + +   ++ +  ++K L ++  ++ 
Sbjct: 62  LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQ-SIKTLDLTSTQIT 120

Query: 155 KMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGLKCIKKISL 213
            +  +    +LQ+L    N++  +  L  LTNLQ L +G  ++  +  L  L  +  +  
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 214 QSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSR 273
             N+++ +        L E++L +N IS +  L+   NL ++ +++  +T      N + 
Sbjct: 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 274 LEDLWLNDNQIESLE 288
           +    +       + 
Sbjct: 241 VVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  127 bits (320), Expect = 2e-34
 Identities = 52/267 (19%), Positives = 113/267 (42%), Gaps = 10/267 (3%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             +      + D  +      +T L      +T+++  + +L+NL  L L+ N I D  +
Sbjct: 22  IKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITD--L 78

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
            P+     L  + EL L  N L  +  ++  + +   D++  +IT    L+ +++ L+ L
Sbjct: 79  APLKN---LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN-LQVL 134

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGL 205
           Y+  N++  +  +    +LQ L  G+ ++  +  L NL+ L  L    N+I  +  L  L
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL 194

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL--STLVNLHVLDVSSNKLT 263
             + ++ L++N+++ +        L  + L++  I+       + LV  +V+   S    
Sbjct: 195 PNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

Query: 264 LVDDIQNLSRLEDLWLNDNQIESLESI 290
               I +        L  N    + ++
Sbjct: 255 APATISDNGTYASPNLTWNLTSFINNV 281

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  136 bits (345), Expect = 2e-38
 Identities = 40/225 (17%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI 159
           E I R   + ++            ++    +T       ++  ++      + +  +  +
Sbjct: 1   ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELS-GVQNFNGDNSNIQSLAGM 59

Query: 160 EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLT 219
           + F +L+ L    N++  +  L++LT L+EL + RNR+K +N     C+ ++ L +N L 
Sbjct: 60  QFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELR 119

Query: 220 SMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWL 279
                     LE L + +N +  +  L  L  L VLD+  N++T    +  L ++  + L
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179

Query: 280 NDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFS 324
              +  +            +    +Y+ N  ++     +     S
Sbjct: 180 TGQKCVNEPV---------KYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  127 bits (320), Expect = 1e-34
 Identities = 45/208 (21%), Positives = 90/208 (43%), Gaps = 12/208 (5%)

Query: 76  LRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG 135
            R   I+   + P      LA   +  L    +  +        +  F+   + I S  G
Sbjct: 4   QRPTPINQ--VFPDP---GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG 58

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
           +   T  LKEL++S N++  +  ++    L+ L    NRL+ +  + +   L  L+L  N
Sbjct: 59  MQFFT-NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNN 116

Query: 196 RI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHV 254
            +    +L  LK ++ +S+++N+L S+        LE L L  N I+   GL+ L  ++ 
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNW 176

Query: 255 LDVSSNKLTLVDDIQNLSRLEDLWLNDN 282
           +D++  K       + +    +L++ + 
Sbjct: 177 IDLTGQKCVN----EPVKYQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 98.2 bits (245), Expect = 6e-24
 Identities = 41/224 (18%), Positives = 82/224 (36%), Gaps = 11/224 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
              +L    + DL S +  + +   +   + + SL   +   +NLK+L L  N I D  +
Sbjct: 22  VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISD--L 78

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
            P+     L  LEEL +  N+L  +  +     LS   +  NE+  +  L ++   L+ L
Sbjct: 79  SPLKD---LTKLEELSVNRNRLKNLNGIP-SACLSRLFLDNNELRDTDSLIHLK-NLEIL 133

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK---VVNLC 203
            +  N++  +  +     L++L+   N +     L  L  +  + L   +     V    
Sbjct: 134 SIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQP 193

Query: 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS 247
            L     +     R  S        +  +  +        + +S
Sbjct: 194 ELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVS 237

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  130 bits (330), Expect = 1e-35
 Identities = 51/293 (17%), Positives = 105/293 (35%), Gaps = 37/293 (12%)

Query: 46  TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
                  +T + L    + +     N+K+L L  N +   +   ++       LE L L 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP---FTKLELLNLS 66

Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
            N L +  D+     L   D++ N +       +    ++ L+ + N + ++        
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS----IETLHAANNNISRVSC-SRGQG 121

Query: 165 LQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK 222
            + +   +N++ ++ +      + +Q L L  N I  VN   L                 
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----------------- 164

Query: 223 GFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDD-IQNLSRLEDLWLND 281
                  LE L L +N I  ++G      L  LD+SSNKL  +    Q+ + +  + L +
Sbjct: 165 -AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223

Query: 282 NQIESLESIVEAVAGSRETLTTIYLENNP---QNLQIILLPSDKFSQIYSRLI 331
           N++  +E  +       + L    L  N      L+     + +   +  + +
Sbjct: 224 NKLVLIEKAL----RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (251), Expect = 2e-24
 Identities = 46/269 (17%), Positives = 89/269 (33%), Gaps = 38/269 (14%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
            +L+L+S  L++   +E  + L  LDL  N +      +    +++ L    N I    +
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE----LLVGPSIETLHAANNNISR--V 114

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTDTLK 144
                     G + + L +NK+  + D+      ++   D+  NEI +            
Sbjct: 115 SC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------------ 158

Query: 145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NL 202
                   V   E       L+ L    N +  ++       L+ L L  N++  +    
Sbjct: 159 --------VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEF 210

Query: 203 CGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGIS---KMEGLSTLVNLHVLDVS 258
                +  ISL++N+L  + K       LE   L  NG       +  S    +  +   
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 259 SNKLTLVDDIQNLSRLEDLWLNDNQIESL 287
           + K     + +  +            E L
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 33/148 (22%)

Query: 179 ENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN 238
           E  QN    +   +  + +K                ++        +    ++EL LS N
Sbjct: 4   EIKQNGNRYKIEKVTDSSLK-------------QALAS------LRQSAWNVKELDLSGN 44

Query: 239 GISKMEG--LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAG 296
            +S++    L+    L +L++SSN L    D+++LS L  L LN+N ++ L         
Sbjct: 45  PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG------ 98

Query: 297 SRETLTTIYLENNPQNLQIILLPSDKFS 324
              ++ T++  NN     I  +   +  
Sbjct: 99  --PSIETLHAANN----NISRVSCSRGQ 120

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  132 bits (334), Expect = 1e-35
 Identities = 65/318 (20%), Positives = 121/318 (38%), Gaps = 29/318 (9%)

Query: 21  EIDLSN-TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSL 76
           +I L+N  ++   +  +  L +        +  L+L   ++  +D+   ++   ++KL +
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 100

Query: 77  RQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITS- 132
             N I    + P   +  +  L  L+L  N L  +P   IF          +S N +   
Sbjct: 101 GFNAI--RYLPP-HVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERI 156

Query: 133 -SHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELW 191
                   T  L+ L +S N +  ++ +     L       N L     L     ++EL 
Sbjct: 157 EDDTFQATTS-LQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL---STLAIPIAVEELD 211

Query: 192 LGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTL 249
              N I VV       +  + LQ N LT          L E+ LS+N + K+       +
Sbjct: 212 ASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 250 VNLHVLDVSSNKLTLVD-DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN 308
             L  L +S+N+L  ++   Q +  L+ L L+ N +  +E          + L  +YL++
Sbjct: 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER----NQPQFDRLENLYLDH 327

Query: 309 NPQNLQIILLPSDKFSQI 326
           N     I+ L       +
Sbjct: 328 N----SIVTLKLSTHHTL 341

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  129 bits (326), Expect = 2e-34
 Identities = 61/267 (22%), Positives = 111/267 (41%), Gaps = 18/267 (6%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
             L +    +  L    F     LT L L  N L+SL   I  +   L  LS+  N ++ 
Sbjct: 96  QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             IE  + + A   L+ L L  N+L  +   S+   L   +VS+N +++          +
Sbjct: 156 --IEDDT-FQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPIA----V 207

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN-- 201
           +EL  S N +  +       +L IL+   N L     L N   L E+ L  N ++ +   
Sbjct: 208 EELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 202 -LCGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVS 258
               ++ ++++ + +NRL ++    +    L+ L LSHN +  +E        L  L + 
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326

Query: 259 SNKLTLVDDIQNLSRLEDLWLNDNQIE 285
            N +  +  +     L++L L+ N  +
Sbjct: 327 HNSIVTLK-LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (296), Expect = 3e-30
 Identities = 58/308 (18%), Positives = 124/308 (40%), Gaps = 36/308 (11%)

Query: 7   KQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI- 65
           +QP  +  + +   +    +  +D+ +  ++         N   +    + +  L + + 
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 66  SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDV 125
                ++ L+L    I++  I+  + +     +++L +  N +  +P   +F+ +     
Sbjct: 66  DSFRQVELLNLNDLQIEE--IDTYA-FAYAHTIQKLYMGFNAIRYLPP-HVFQNVP---- 117

Query: 126 SFNEITSSHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--L 181
                            L  L + +N++  +      +   L  L   +N L  +E+   
Sbjct: 118 ----------------LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 182 QNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS 241
           Q  T+LQ L L  NR+  V+L  +  +   ++  N L++       IA+EEL  SHN I+
Sbjct: 162 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST---LAIPIAVEELDASHNSIN 218

Query: 242 KMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETL 301
            + G    V L +L +  N LT    + N   L ++ L+ N++E +          +  L
Sbjct: 219 VVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY--HPFVKMQR-L 274

Query: 302 TTIYLENN 309
             +Y+ NN
Sbjct: 275 ERLYISNN 282

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  128 bits (324), Expect = 1e-33
 Identities = 70/307 (22%), Positives = 123/307 (40%), Gaps = 37/307 (12%)

Query: 44  FPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102
            PT    LDL  NR+ +L+    +   +L++L L +N++    +EP + ++ L  L  L 
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--VEPGA-FNNLFNLRTLG 86

Query: 103 LRDNKLMKIPDVSIFKKLS---VFDVSFNEITS-----SHGLSNVTDTLKELYVSKNEVP 154
           LR N+L  IP   +F  LS     D+S N+I          L N    LK L V  N++ 
Sbjct: 87  LRSNRLKLIPL-GVFTGLSNLTKLDISENKIVILLDYMFQDLYN----LKSLEVGDNDLV 141

Query: 155 KMEE--IEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVN---LCGLKC 207
            +        + L+ L      L  +    L +L  L  L L    I  +       L  
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 208 IKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLT 263
           +K + +                + L  L ++H  ++ +    +  LV L  L++S N ++
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 264 LVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSD 321
            ++   +  L RL+++ L   Q+  +E    A  G    L  + +  N    Q+  L   
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEP--YAFRGLNY-LRVLNVSGN----QLTTLEES 314

Query: 322 KFSQIYS 328
            F  + +
Sbjct: 315 VFHSVGN 321

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (315), Expect = 2e-32
 Identities = 74/304 (24%), Positives = 143/304 (47%), Gaps = 27/304 (8%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
            +LDL   ++  L+  EF    +L EL+L  N +++++    ++L NL+ L LR N +  
Sbjct: 35  RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITS-SHGLSNV 139
               P+  +  L+ L +L + +NK++ + D  +F+ L      +V  N++   SH   + 
Sbjct: 95  I---PLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 140 TDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRN 195
            ++L++L + K  +  +    + H H L +L      +  + +   + L  L+ L +   
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 196 RIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG--LST 248
                   N      +  +S+    LT++        + L  L LS+N IS +EG  L  
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270

Query: 249 LVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYL 306
           L+ L  + +   +L +V+    + L+ L  L ++ NQ+ +LE   E+V  S   L T+ L
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE---ESVFHSVGNLETLIL 327

Query: 307 ENNP 310
           ++NP
Sbjct: 328 DSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (271), Expect = 2e-26
 Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 29/262 (11%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
           +L N   L L S +L  +    F   +NLT+LD++ N++  L   +   L NLK L +  
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 79  NLIDDAAIEPISRWDALAG---LEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITS- 132
           N +    I       A +G   LE+L L    L  IP  ++     L V  +    I + 
Sbjct: 138 NDL--VYISH----RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 133 -SHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD--LQILEFGSNRLRVMEN--LQNLTNL 187
             +    +   LK L +S             +   L  L      L  +    +++L  L
Sbjct: 192 RDYSFKRLYR-LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250

Query: 188 QELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTS--MKGFEECIALEELYLSHNGISK 242
           + L L  N I  +    L  L  +++I L   +L       F     L  L +S N ++ 
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310

Query: 243 MEG--LSTLVNLHVLDVSSNKL 262
           +E     ++ NL  L + SN L
Sbjct: 311 LEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 12/96 (12%)

Query: 232 ELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLE 288
            +         + EG+ T     +LD+  N++  +  D+  +   LE+L LN+N + ++E
Sbjct: 15  AVLCHRKRFVAVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 289 SIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFS 324
               A       L T+ L +N    ++ L+P   F+
Sbjct: 73  P--GAFNNLFN-LRTLGLRSN----RLKLIPLGVFT 101

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  125 bits (316), Expect = 2e-33
 Identities = 70/324 (21%), Positives = 127/324 (39%), Gaps = 47/324 (14%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
              V+  +   L  +   + P +   LDL  N++T +      +L NL  L L  N I  
Sbjct: 32  HLRVVQCSDLGLEKV-PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-- 88

Query: 84  AAIEPISRWDALAG---LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT 140
           + I P     A A    LE L L  N+L ++P+  + K L    V  NEIT         
Sbjct: 89  SKISP----GAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVRK----- 138

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME----NLQNLTNLQELWLGRNR 196
                L                + + ++E G+N L+         Q +  L  + +    
Sbjct: 139 SVFNGL----------------NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 197 IKVVNLCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKMEG--LSTLVNL 252
           I  +       + ++ L  N++T +     +    L +L LS N IS ++   L+   +L
Sbjct: 183 ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242

Query: 253 HVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET---LTTIYLEN 308
             L +++NKL  V   + +   ++ ++L++N I ++ S      G        + + L +
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 309 NPQNLQIILLPSDKFSQIYSRLIL 332
           NP  +Q   +    F  +Y R  +
Sbjct: 303 NP--VQYWEIQPSTFRCVYVRAAV 324

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (291), Expect = 7e-30
 Identities = 53/287 (18%), Positives = 117/287 (40%), Gaps = 43/287 (14%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
            +LDL + ++ ++   +F    NL  L L  N+++ +     + L  L++L L +N +  
Sbjct: 55  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITSSH------ 134
             +           L+EL + +N++ K+   S+F  L+   V ++  N + SS       
Sbjct: 114 -ELPE----KMPKTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 135 -GLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELW 191
            G+      L  + ++   +  + +      L  L    N++  ++   L+ L NL +L 
Sbjct: 168 QGMKK----LSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 192 LGRNRIKVVN---LCGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKMEG-- 245
           L  N I  V+   L     ++++ L +N+L  +  G  +   ++ +YL +N IS +    
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 282

Query: 246 ------LSTLVNLHVLDVSSNKLTLV----DDIQNLSRLEDLWLNDN 282
                  +   +   + + SN +          + +     + L + 
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (259), Expect = 2e-25
 Identities = 48/252 (19%), Positives = 93/252 (36%), Gaps = 41/252 (16%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAA 85
             L L+  QL +L   + P  L EL +  N +T +   + + L+ +  + L  N +  + 
Sbjct: 103 ERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 86  IEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKE 145
           IE  + +  +  L  + + D  +  IP   +   L+   +  N+IT          +LK 
Sbjct: 162 IENGA-FQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVD-----AASLKG 214

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVV--N 201
           L                  L  L    N +  ++N  L N  +L+EL L  N++  V   
Sbjct: 215 LNN----------------LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258

Query: 202 LCGLKCIKKISLQSNRLTS--------MKGFEECIALEELYLSHNGISKME----GLSTL 249
           L   K I+ + L +N +++             +  +   + L  N +   E        +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 250 VNLHVLDVSSNK 261
                + + + K
Sbjct: 319 YVRAAVQLGNYK 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  124 bits (314), Expect = 2e-32
 Identities = 61/308 (19%), Positives = 115/308 (37%), Gaps = 33/308 (10%)

Query: 21  EIDLSN----TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSL 76
            I        T LD  +  + D+  +E  T LT+L  T+N +T+LD  +S  +NL  L+ 
Sbjct: 35  TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLAC 92

Query: 77  RQNLIDDAAIEPISR---------------WDALAGLEELILRDNKLMKIPDVSIFKKLS 121
             N + +  + P+++                     L  L    N L +I DVS   +L+
Sbjct: 93  DSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-DVSHNTQLT 151

Query: 122 VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENL 181
             D   N+  +   ++  T  L  L  S N++ ++ ++     L  L   +N +  + +L
Sbjct: 152 ELDCHLNKKITKLDVTPQTQ-LTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKL-DL 208

Query: 182 QNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS 241
                L  L    N++  +++  L  +       N LT +        L  L+     + 
Sbjct: 209 NQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLL 267

Query: 242 KMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETL 301
           +++ L+    L        +     D+ + ++L  L      I  L+            L
Sbjct: 268 EID-LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD------LSQNPKL 320

Query: 302 TTIYLENN 309
             +YL N 
Sbjct: 321 VYLYLNNT 328

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  119 bits (301), Expect = 1e-30
 Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 16/262 (6%)

Query: 29  LDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
               +F++   D++       LT LD   + +T +   I  L+ L KL    N I     
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTL-- 79

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             +S+      L  L    NKL  +  V+   KL+  +   N++T      N    L  L
Sbjct: 80  -DLSQ---NTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLDVSQN--PLLTYL 132

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLK 206
             ++N + ++ ++ H   L  L+   N+     ++   T L  L    N+I  +++   K
Sbjct: 133 NCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNK 191

Query: 207 CIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVD 266
            + +++  +N +T +    + I L  L  S N +++++ ++ L  L   D S N LT + 
Sbjct: 192 LLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTEL- 248

Query: 267 DIQNLSRLEDLWLNDNQIESLE 288
           D+  LS+L  L      +  ++
Sbjct: 249 DVSTLSKLTTLHCIQTDLLEID 270

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  106 bits (267), Expect = 8e-26
 Identities = 58/299 (19%), Positives = 109/299 (36%), Gaps = 21/299 (7%)

Query: 21  EIDLSN----TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSL 76
           EID+S+    T LD    +      V   T LT LD + N++T LD  +S    L +L+ 
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNC 198

Query: 77  RQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS--SH 134
             N I    +           L  L    NKL +I DV+   +L+ FD S N +T     
Sbjct: 199 DTNNITKLDLN------QNIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPLTELDVS 251

Query: 135 GLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGR 194
            LS     L  L+  + ++ +++ + H   L   +    R     ++ + T L  L    
Sbjct: 252 TLSK----LTTLHCIQTDLLEID-LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA 306

Query: 195 NRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHV 254
             I  ++L     +  + L +  LT +        L+ L   +  I     +  +  L+ 
Sbjct: 307 AGITELDLSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVNAHIQDFSSVGKIPALNN 365

Query: 255 LDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL 313
              +  +   +      +    + ++ + ++   + +    G              +NL
Sbjct: 366 NFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENL 424

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  103 bits (258), Expect = 1e-24
 Identities = 43/258 (16%), Positives = 92/258 (35%), Gaps = 19/258 (7%)

Query: 69  SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFN 128
            N          +         +   LA L  L   ++ +  +  +     L+    + N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQ---LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN 74

Query: 129 EITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQ 188
            IT+   LS  T  L  L    N++  ++ +     L  L   +N+L  + ++     L 
Sbjct: 75  NITTLD-LSQNT-NLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL-DVSQNPLLT 130

Query: 189 ELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLST 248
            L   RN +  +++     + ++    N+  +         L  L  S N I++++ +S 
Sbjct: 131 YLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQ 189

Query: 249 LVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN 308
              L+ L+  +N +T + D+    +L  L  + N++  ++            LT      
Sbjct: 190 NKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID------VTPLTQLTYFDCSV 242

Query: 309 NPQNLQIILLPSDKFSQI 326
           N     +  L     S++
Sbjct: 243 N----PLTELDVSTLSKL 256

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.9 bits (239), Expect = 3e-22
 Identities = 45/273 (16%), Positives = 90/273 (32%), Gaps = 20/273 (7%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T LD +  ++ +LD V     L  L+   N +T LD  ++    L  L    N + +  +
Sbjct: 173 TTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDV 229

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
            P      L  L       N L ++  VS   KL+       ++       N    L   
Sbjct: 230 TP------LTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQ--LIYF 280

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLK 206
                   K  ++ H   L +L+  +  +  + +L     L  L+L    +  +++    
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELTELDVSHNT 339

Query: 207 CIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME-------GLSTLVNLHVLDVSS 259
            +K +S  +  +       +  AL   + +      M         L+  V+  +LD   
Sbjct: 340 KLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

Query: 260 NKLTLVDDIQNLSRLEDLWLNDNQIESLESIVE 292
           N + +      +       +    + +    V 
Sbjct: 400 NPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  121 bits (305), Expect = 7e-32
 Identities = 63/311 (20%), Positives = 109/311 (35%), Gaps = 40/311 (12%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83
              V+  +   L  +   E   + T LDL  N ++ L       L +L  L L  N I  
Sbjct: 34  HLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-- 90

Query: 84  AAIEPISRWDALAG---LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSS-----HG 135
           + I       A +    L++L +  N L++IP  ++   L    +  N I         G
Sbjct: 91  SKIHE----KAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKVPKGVFSG 145

Query: 136 LSNVTDTLKELYVSKNEVPKME-EIEHFHD--LQILEFGSNRLRVMENLQNLTNLQELWL 192
           L N    +  + +  N +     E   F    L  L     +L  +        L EL L
Sbjct: 146 LRN----MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNELHL 200

Query: 193 GRNRIKVVN---LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM-EGL 246
             N+I+ +    L     + ++ L  N++  +          L EL+L +N +S++  GL
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260

Query: 247 STLVNLHVLDVSSNKLTLVDD--------IQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
             L  L V+ + +N +T V              +    + L +N +   E          
Sbjct: 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 299 ETLTTIYLENN 309
           +    I   N 
Sbjct: 321 D-RLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  115 bits (289), Expect = 1e-29
 Identities = 58/288 (20%), Positives = 124/288 (43%), Gaps = 44/288 (15%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
           T+LDL +  + +L   +F    +L  L L  N+++ +  +  S L  L+KL + +N +  
Sbjct: 57  TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-- 114

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITSS------- 133
             I P    +  + L EL + DN++ K+P   +F  L      ++  N + +S       
Sbjct: 115 VEIPP----NLPSSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 134 HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELW 191
            GL      L  L +S+ ++  + + +    L  L    N+++ +E   L   + L  L 
Sbjct: 170 DGLK-----LNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 192 LGRNRIKVVN---LCGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISK----- 242
           LG N+I+++    L  L  ++++ L +N+L+ +  G  +   L+ +YL  N I+K     
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 243 ---MEGLSTLVNLHVLDVSSNKLTLV----DDIQNLSRLEDLWLNDNQ 283
              +         + + + +N +          + ++    +   + +
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  107 bits (268), Expect = 1e-26
 Identities = 62/299 (20%), Positives = 120/299 (40%), Gaps = 52/299 (17%)

Query: 47  NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN 106
           +L  +  +   L ++   IS   +   L L+ N I  + +     +  L  L  L+L +N
Sbjct: 34  HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDI--SELRKDD-FKGLQHLYALVLVNN 88

Query: 107 KLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQ 166
           K+ KI +   F  L                      L++LY+SKN + ++        L 
Sbjct: 89  KISKIHE-KAFSPLR--------------------KLQKLYISKNHLVEIPP-NLPSSLV 126

Query: 167 ILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVNL-----CGLKCIKKISLQSNRLT 219
            L    NR+R +       L N+  + +G N ++          GLK +  + +   +LT
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLT 185

Query: 220 SM--KGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSR 273
            +     E    L EL+L HN I  +E   L     L+ L +  N++ ++++  +  L  
Sbjct: 186 GIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 274 LEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLIL 332
           L +L L++N++  + + +  +    + L  +YL  N     I  +  + F  +   +  
Sbjct: 243 LRELHLDNNKLSRVPAGLPDL----KLLQVVYLHTN----NITKVGVNDFCPVGFGVKR 293

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  120 bits (303), Expect = 9e-32
 Identities = 60/297 (20%), Positives = 105/297 (35%), Gaps = 56/297 (18%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
           S T +   S  L  + +   P++ T L+L +N+L SL   +   L+ L KLSL  N +  
Sbjct: 8   SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
                 S       L+ L L  N ++ +     F  L                      L
Sbjct: 67  KGCCSQS-DFGTTSLKYLDLSFNGVITMSSN--FLGLE--------------------QL 103

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN-- 201
           + L    + + +M E   F                    +L NL  L +     +V    
Sbjct: 104 EHLDFQHSNLKQMSEFSVF-------------------LSLRNLIYLDISHTHTRVAFNG 144

Query: 202 -LCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKMEG--LSTLVNLHVL 255
              GL  ++ + +  N          F E   L  L LS   + ++     ++L +L VL
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204

Query: 256 DVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           ++S N    +D    + L+ L+ L  + N I + +   + +     +L  + L  N 
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK--QELQHFPSSLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.8 bits (226), Expect = 6e-21
 Identities = 51/272 (18%), Positives = 92/272 (33%), Gaps = 75/272 (27%)

Query: 21  EIDLSN---TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLR 77
           ++ LS+   +     S            T+L  LDL+ N + ++ S    L  L+ L  +
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGT------TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109

Query: 78  QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLS 137
            + +    +   S + +L  L  L +         +        +F+          GLS
Sbjct: 110 HSNLK--QMSEFSVFLSLRNLIYLDISHTHTRVAFN-------GIFN----------GLS 150

Query: 138 NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
           +    L+ L ++ N        E+F                +    L NL  L L + ++
Sbjct: 151 S----LEVLKMAGNSF-----QENFLP--------------DIFTELRNLTFLDLSQCQL 187

Query: 198 KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVL 255
           +              L      S+       +L+ L +SHN    ++      L +L VL
Sbjct: 188 E-------------QLSPTAFNSLS------SLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 256 DVSSNKLTLV--DDIQNL-SRLEDLWLNDNQI 284
           D S N +      ++Q+  S L  L L  N  
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 9e-20
 Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 19/176 (10%)

Query: 162 FHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVNLC-----GLKCIKKISLQ 214
                 LE  SN+L+ + +     LT L +L L  N +     C     G   +K + L 
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 215 SNRLTSM-KGFEECIALEELYLSHNGISKMEGLST---LVNLHVLDVSSNKLTLVDD--I 268
            N + +M   F     LE L   H+ + +M   S    L NL  LD+S     +  +   
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 269 QNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFS 324
             LS LE L +  N     E+ +  +      LT + L       Q+  L    F+
Sbjct: 147 NGLSSLEVLKMAGNSF--QENFLPDIFTELRNLTFLDLSQC----QLEQLSPTAFN 196

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 40/211 (18%), Positives = 75/211 (35%), Gaps = 33/211 (15%)

Query: 27  TVLDLTSFQLHDLDSVEFP-TNLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDD 83
             LDL+   +  + S       L  LD   + L  +        L NL  L +       
Sbjct: 81  KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-- 138

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITS-SHGLSNV 139
                   ++ L+ LE L +  N   +     IF +L      D+S  ++   S    N 
Sbjct: 139 RVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 140 TDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQNL-TNLQEL---- 190
             +L+ L +S N    ++    +  + LQ+L++  N +   +   LQ+  ++L  L    
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

Query: 191 --------------WLGRNRIKVVNLCGLKC 207
                         W+   R  +V +  ++C
Sbjct: 258 NDFACTCEHQSFLQWIKDQRQLLVEVERMEC 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  124 bits (313), Expect = 9e-32
 Identities = 67/317 (21%), Positives = 125/317 (39%), Gaps = 27/317 (8%)

Query: 21  EIDLSN-TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSL 76
           +I L+N  ++   +  +  L +        +  L+L   ++  +D+   ++   ++KL +
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 106

Query: 77  RQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITS- 132
             N I    + P   +  +  L  L+L  N L  +P   IF    KL+   +S N +   
Sbjct: 107 GFNAI--RYLPP-HVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERI 162

Query: 133 SHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWL 192
                  T +L+ L +S N +  ++ +     L       N L     L     ++EL  
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL---STLAIPIAVEELDA 218

Query: 193 GRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLV 250
             N I VV       +  + LQ N LT          L E+ LS+N + K+       + 
Sbjct: 219 SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 251 NLHVLDVSSNKLTLVD-DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
            L  L +S+N+L  ++   Q +  L+ L L+ N +  +    E      + L  +YL++N
Sbjct: 279 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV----ERNQPQFDRLENLYLDHN 334

Query: 310 PQNLQIILLPSDKFSQI 326
                I+ L       +
Sbjct: 335 ----SIVTLKLSTHHTL 347

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (280), Expect = 2e-27
 Identities = 56/327 (17%), Positives = 137/327 (41%), Gaps = 25/327 (7%)

Query: 7   KQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI- 65
           +QP  +  + +   +    +  +D+ +  ++         N   +    + +  L + + 
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 71

Query: 66  SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---V 122
                ++ L+L    I++  I+  + +     +++L +  N +  +P   +F+ +    V
Sbjct: 72  DSFRQVELLNLNDLQIEE--IDTYA-FAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTV 127

Query: 123 FDVSFNEITS-SHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVME 179
             +  N+++S   G+ + T  L  L +S N + ++E+   +    LQ L+  SNRL  ++
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187

Query: 180 NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNG 239
            L  + +L    +  N +    L     ++++    N +  ++     + L  L L HN 
Sbjct: 188 -LSLIPSLFHANVSYNLLS--TLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNN 243

Query: 240 ISKMEGLSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGS 297
           ++    L     L  +D+S N+L  +       + RLE L++++N++ +L          
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL----NLYGQP 299

Query: 298 RETLTTIYLENNPQNLQIILLPSDKFS 324
             TL  + L +N     ++ +  ++  
Sbjct: 300 IPTLKVLDLSHN----HLLHVERNQPQ 322

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.9 bits (189), Expect = 1e-15
 Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 16/197 (8%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             L L+S +L  +D    P +L   +++ N L++L    +    +++L    N I    +
Sbjct: 174 QNLQLSSNRLTHVDLSLIP-SLFHANVSYNLLSTL----AIPIAVEELDASHNSI--NVV 226

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS--SHGLSNVTDTLK 144
                      L  L L+ N L     +  +  L   D+S+NE+     H    +   L+
Sbjct: 227 RG----PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-LE 281

Query: 145 ELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVME-NLQNLTNLQELWLGRNRIKVVNL 202
            LY+S N +  +    +    L++L+   N L  +E N      L+ L+L  N I  + L
Sbjct: 282 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 341

Query: 203 CGLKCIKKISLQSNRLT 219
                +K ++L  N   
Sbjct: 342 STHHTLKNLTLSHNDWD 358

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  123 bits (311), Expect = 2e-31
 Identities = 67/307 (21%), Positives = 113/307 (36%), Gaps = 29/307 (9%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
           D++     LT       D V+F    N++ + L    +  L+  +      + LS+ +  
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQ 318

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNV- 139
           +       +     L  L+ L L  NK            LS  D+S N ++ S   S   
Sbjct: 319 LKQ--FPTLD----LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 140 --TDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVMEN---LQNLTNLQELWLG 193
             T++L+ L +S N    M        +LQ L+F  + L+ +       +L  L  L + 
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 194 RNRIKVVN---LCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKMEG-- 245
               K+       GL  +  + +  N          F     L  L LS   + ++    
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 246 LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT 303
             TL  L +L++S N L  +D      L  L  L  + N+IE+ + I++    S   L  
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS---LAF 549

Query: 304 IYLENNP 310
             L NN 
Sbjct: 550 FNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  109 bits (275), Expect = 1e-26
 Identities = 51/309 (16%), Positives = 109/309 (35%), Gaps = 30/309 (9%)

Query: 27  TVLDLTSFQLHDLDSVEF------PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
             +DL+   +  +   +       P     LD++ N +  +  +      L +L+LR N 
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT 140
                ++   +   LAGL    L   +     ++ IF+  S+ +          GL +VT
Sbjct: 216 NSSNIMKTCLQ--NLAGLHVHRLILGEFKDERNLEIFE-PSIME----------GLCDVT 262

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV 200
                L  + +    + +     ++  +      ++ +E++      Q L + R ++K  
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS----TLVNLHVLD 256
               L  +K ++L  N+ +         +L  L LS N +S     S       +L  LD
Sbjct: 323 PTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 257 VSSNKLTLVD-DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315
           +S N   ++  +   L  L+ L    + ++ +     A     + L  + +         
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF-SAFLSLEK-LLYLDISYT----NT 436

Query: 316 ILLPSDKFS 324
            +     F 
Sbjct: 437 KIDFDGIFL 445

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 45/274 (16%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISH---LSNLKKLSLRQNLIDD 83
             L LT  +           +L+ LDL+ N L+            ++L+ L L  N    
Sbjct: 331 KSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-- 388

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSHGLSNVT 140
             I   + +  L  L+ L  + + L ++ + S F   +KL   D+S+             
Sbjct: 389 --IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD----- 441

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM---ENLQNLTNLQELWLGRNRI 197
                                   L  L+   N  +         N TNL  L L + ++
Sbjct: 442 ----------------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

Query: 198 KVVN---LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG--LSTLV 250
           + ++      L  ++ +++  N L  +    + +  +L  L  S N I   +G       
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 251 NLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQI 284
           +L   ++++N +  + + Q   +    W+ + + 
Sbjct: 546 SLAFFNLTNNSVACICEHQKFLQ----WVKEQKQ 575

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.6 bits (215), Expect = 9e-19
 Identities = 59/320 (18%), Positives = 101/320 (31%), Gaps = 65/320 (20%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLI 81
            + N        +L  +   + P++   +DL+ N L  L S   S+ S L+ L L +  I
Sbjct: 10  VVPNITYQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI 68

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
           +   IE  + W  L  L  LIL  N +      S                   GL++   
Sbjct: 69  ET--IEDKA-WHGLHHLSNLILTGNPIQSFSPGSF-----------------SGLTS--- 105

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKV 199
                                  L+ L     +L  +E+  +  L  L++L +  N I  
Sbjct: 106 -----------------------LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 200 VNL----CGLKCIKKISLQSNRLTSMKG------FEECIALEELYLSHNGISKME-GLST 248
             L      L  +  + L  N + ++         E       L +S N I  ++     
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 249 LVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY 305
            + LH L +  N  +       +QNL+ L    L   + +   ++        E L  + 
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 306 -LENNPQNLQIILLPSDKFS 324
             E              KF 
Sbjct: 263 IDEFRLTYTNDFSDDIVKFH 282

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (311), Expect = 3e-31
 Identities = 79/327 (24%), Positives = 126/327 (38%), Gaps = 43/327 (13%)

Query: 21  EIDLSN--TVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDSRI-SHLSNLKKLS 75
            ++L    T   ++   L  +D   F     L  L++  N +  + S + + L NLK LS
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

Query: 76  LRQNLIDDAAIEPISRWD-ALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITS 132
           L  +      +   +    A + L  L L  NK+ KI   +      L V D+  NEI  
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 133 S------HGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN---- 180
                   GL N    + E+Y+S N+  ++          LQ L      L+ +++    
Sbjct: 420 ELTGQEWRGLEN----IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 181 LQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSM----------KGFEEC 227
            Q L NL  L L  N I  +N   L GL+ ++ + LQ N L  +             +  
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 228 IALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQ 283
             L  L L  NG  ++  E    L  L ++D+  N L  +      N   L+ L L  N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 284 IESLESIVEAVAGSRETLTTIYLENNP 310
           I S+    +    +   LT + +  NP
Sbjct: 596 ITSV--EKKVFGPAFRNLTELDMRFNP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  114 bits (288), Expect = 3e-28
 Identities = 72/339 (21%), Positives = 138/339 (40%), Gaps = 47/339 (13%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLID- 82
           T+LDL+   L+ + +  F     L    L  N +  L S  +  L N++ L+L+++    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 83  DAAIEPISRWDA-----LAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEIT---- 131
             ++  + + D      L  LE L + DN +  I          L    +S +  +    
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 132 SSHGLSNVTDT-LKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVM---ENLQNLT 185
           ++    ++  + L  L ++KN++ K+E         L++L+ G N +      +  + L 
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 186 NLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSM----KGFEECIALEELYLSHN 238
           N+ E++L  N+   +       +  ++++ L+   L ++      F+    L  L LS+N
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 239 GISKM--EGLSTLVNLHVLDVSSNKLTLVDD----------IQNLSRLEDLWLNDNQIES 286
            I+ +  + L  L  L +LD+  N L  +            ++ LS L  L L  N  + 
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 287 LESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQ 325
           +   VE      E L  I L  N     +  LP+  F+ 
Sbjct: 551 I--PVEVFKDLFE-LKIIDLGLN----NLNTLPASVFNN 582

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (284), Expect = 1e-27
 Identities = 54/301 (17%), Positives = 119/301 (39%), Gaps = 39/301 (12%)

Query: 27  TVLDLTSFQLHDLDSVEF----PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLI 81
             L L++ ++  L S E      ++L +L+L++N++          +  L  L L    +
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSI----FKKLSVFDVSFNEITS--SHG 135
             +  E +    A   +  L L +++L    + +     +  L++ D+S+N +    +  
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 136 LSNVTDTLKELYVSKNEV-----------PKMEEIEHFHDLQILEFGSNRLRVMEN--LQ 182
            + +   L+  ++  N +             +  +               L  +++   Q
Sbjct: 268 FAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 183 NLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLT----SMKGFEECI--ALEEL 233
            L  L+ L +  N I  +      GL  +K +SL ++  +    + + F       L  L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 234 YLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLE 288
            L+ N ISK+  +  S L +L VLD+  N++       + + L  + +++L+ N+   L 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 289 S 289
            
Sbjct: 447 R 447

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (255), Expect = 5e-24
 Identities = 73/345 (21%), Positives = 133/345 (38%), Gaps = 54/345 (15%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83
           S+ V D +  +L  +   + PTN+T L+LT N+L  L +   +  S L  L +  N I  
Sbjct: 5   SHEVADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTD 141
             +EP      L  L+ L L+ N+L ++ D +      L+   +  N I           
Sbjct: 64  --LEPEL-CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN------ 114

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKV 199
                                 +L  L+   N L   +      L NLQEL L  N+I+ 
Sbjct: 115 ---------------NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 200 V-----NLCGLKCIKKISLQSNRLTS--MKGFEECIALEELYLSHNGIS-----KMEGLS 247
           +     ++     +KK+ L SN++       F     L  L+L++  +      K+    
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 248 TLVNLHVLDVSSNKLTLVDD--IQNL--SRLEDLWLNDNQIESLESIVEAVAGSRETLTT 303
              ++  L +S+++L+   +     L  + L  L L+ N +  + +  ++ A   + L  
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN--DSFAWLPQ-LEY 276

Query: 304 IYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQ 348
            +LE N     I  L S     +++ +  +   RS +    S   
Sbjct: 277 FFLEYN----NIQHLFSHSLHGLFN-VRYLNLKRSFTKQSISLAS 316

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  101 bits (253), Expect = 1e-23
 Identities = 50/302 (16%), Positives = 111/302 (36%), Gaps = 51/302 (16%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
            +    D +  +LT +   +   +N+  L+L  N +        +R    + L  L +  
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTR---YSQLTSLDVGF 58

Query: 106 NKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFH 163
           N + K+          L V ++  NE++                         +      
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLS---------------------DKTFAFCT 97

Query: 164 DLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRL 218
           +L  L   SN ++ ++N       NL  L L  N +          L+ ++++ L +N++
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 219 TSMK----GFEECIALEELYLSHNGISK--MEGLSTLVNLHVLDVSSNKLTLVDDI---- 268
            ++K          +L++L LS N I +        +  L  L +++ +L          
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 269 -QNLSRLEDLWLNDNQIESLESIVEAVAGSRET-LTTIYLENNPQNLQIILLPSDKFSQI 326
               + + +L L+++Q+ +  +      G + T LT + L  N     + ++ +D F+ +
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSN--TTFLGLKWTNLTMLDLSYN----NLNVVGNDSFAWL 271

Query: 327 YS 328
             
Sbjct: 272 PQ 273

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 55/288 (19%), Positives = 110/288 (38%), Gaps = 45/288 (15%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQN 79
            + LSN+   L +       S+   + L  L+LT N+++ ++S   S L +L+ L L  N
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 80  LIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLS 137
            I          W  L  + E+ L  NK +++   S      L    +    + +     
Sbjct: 416 EIGQEL--TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 138 NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRN 195
           +                     +   +L IL+  +N +  + +  L+ L  L+ L L  N
Sbjct: 474 SP-------------------FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 196 RIKVV-----------NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK 242
            +  +            L GL  +  ++L+SN    +  + F++   L+ + L  N ++ 
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 243 MEG--LSTLVNLHVLDVSSNKLTLVDD---IQNLSRLEDLWLNDNQIE 285
           +     +  V+L  L++  N +T V+          L +L +  N  +
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  122 bits (307), Expect = 4e-31
 Identities = 54/254 (21%), Positives = 101/254 (39%), Gaps = 9/254 (3%)

Query: 63  SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSV 122
           +R SH+      +   N         +    + +  E ++L+D       D +  ++L  
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR 353

Query: 123 FDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQ 182
            ++S  + T           L+EL   +N+   +  I     L  L +    L+    L+
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEP-ENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 412

Query: 183 NLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSH 237
            +  ++  +L   R K +            ++ + L    LT +   E+ + +  L LSH
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSH 472

Query: 238 NGISKME-GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAG 296
           N +  +   L+ L  L VL  S N L  VD + NL RL++L L +N+++   +I      
Sbjct: 473 NRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQP--LV 530

Query: 297 SRETLTTIYLENNP 310
           S   L  + L+ N 
Sbjct: 531 SCPRLVLLNLQGNS 544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 87.9 bits (217), Expect = 3e-19
 Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 8/214 (3%)

Query: 45  PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
              L   +L+  + T L S +     L++L           I  +   D L   +E +  
Sbjct: 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 407

Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
            + L  +      +   + D+    +  +  L      ++ L+++  ++  +  +E    
Sbjct: 408 FSTLKAV---DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL 464

Query: 165 LQILEFGSNRLRVME-NLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK 222
           +  L+   NRLR +   L  L  L+ L    N ++ V  +  L  ++++ L +NRL    
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524

Query: 223 GFEE---CIALEELYLSHNGISKMEGLSTLVNLH 253
             +    C  L  L L  N + + EG+   +   
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.9 bits (165), Expect = 1e-12
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 8/126 (6%)

Query: 10  SAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLS 69
           S                 VL L    L  L  +E    +T LDL+ NRL +L   ++ L 
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR 486

Query: 70  NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDV---SIFKKLSVFDVS 126
            L+ L    N +++  ++ ++    L  L+EL+L +N+L +   +       +L + ++ 
Sbjct: 487 CLEVLQASDNALEN--VDGVAN---LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 127 FNEITS 132
            N +  
Sbjct: 542 GNSLCQ 547

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (304), Expect = 6e-31
 Identities = 50/269 (18%), Positives = 97/269 (36%), Gaps = 34/269 (12%)

Query: 46  TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
                  +T + L    + +     N+K+L L  N +   +   ++       LE L L 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP---FTKLELLNLS 66

Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
            N L +  D+     L   D++ N +       +    ++ L+ + N + ++        
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS----IETLHAANNNISRVSC-SRGQG 121

Query: 165 LQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK 222
            + +   +N++ ++ +      + +Q L L  N I  VN   L                 
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----------------- 164

Query: 223 GFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDD-IQNLSRLEDLWLND 281
                  LE L L +N I  ++G      L  LD+SSNKL  +    Q+ + +  + L +
Sbjct: 165 -AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223

Query: 282 NQIESLESIVEAVAGSRETLTTIYLENNP 310
           N++  +E  +         L    L  N 
Sbjct: 224 NKLVLIEKALRFSQ----NLEHFDLRGNG 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.2 bits (247), Expect = 4e-23
 Identities = 46/271 (16%), Positives = 90/271 (33%), Gaps = 38/271 (14%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
            +L+L+S  L++   +E  + L  LDL  N +      +    +++ L    N I    +
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE----LLVGPSIETLHAANNNISR--V 114

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTDTLK 144
                     G + + L +NK+  + D+      ++   D+  NEI +            
Sbjct: 115 SC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------------ 158

Query: 145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NL 202
                   V   E       L+ L    N +  ++       L+ L L  N++  +    
Sbjct: 159 --------VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEF 210

Query: 203 CGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGIS---KMEGLSTLVNLHVLDVS 258
                +  ISL++N+L  + K       LE   L  NG       +  S    +  +   
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 259 SNKLTLVDDIQNLSRLEDLWLNDNQIESLES 289
           + K     + +  +            E L +
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.7 bits (186), Expect = 3e-15
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 18/152 (11%)

Query: 179 ENLQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEEL 233
           E  QN    +   +  + +K            +K++ L  N L+ +          LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 234 YLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEA 293
            LS N + +   L +L  L  LD+++N +    ++     +E L   +N I  +      
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLDLNNNYVQ---ELLVGPSIETLHAANNNISRVS----- 115

Query: 294 VAGSRETLTTIYLENNPQNLQIILLPSDKFSQ 325
                +    IYL NN    +I +L       
Sbjct: 116 -CSRGQGKKNIYLANN----KITMLRDLDEGC 142

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 29/283 (10%)

Query: 27  TVLDLTSFQLHDLDSVEFP---TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLID- 82
             LDL   ++  ++  E       L  L+L  N +  +  ++   + LK L L  N +  
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAF 205

Query: 83  -DAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVT 140
                +        AG+  + LR+NKL+ I   +   + L  FD+  N           +
Sbjct: 206 MGPEFQS------AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 141 DTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNR 196
              +   V+K  V K+     E      +  +G+     +       L  L+        
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319

Query: 197 IKVVNLCGLKC-------IKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKMEGLS 247
            +      L+C        ++I     +  ++         A   L      + +     
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 248 TLVNLHV---LDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL 287
              +  +   L  +  ++ L    +  S L+ L     + E +
Sbjct: 380 RRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEM 422

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.5 bits (170), Expect = 3e-13
 Identities = 42/282 (14%), Positives = 84/282 (29%), Gaps = 23/282 (8%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             L+L    ++D+        L  LDL++N+L  +       + +  +SLR N +    I
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--I 229

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKL-SVFDVSFNEITSSHGLSNVTDTLKE 145
           E          LE   LR N          F K   V  V+   +    G +    T+  
Sbjct: 230 EKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQ---------NLTNLQELWLGRNR 196
           L        +         L  L+   + L   +  +         N    +E+   + +
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 197 IKVVN---LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEGLST-LV 250
            + V        +    +  +   L      G      L+       G  +++  +    
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407

Query: 251 NLHVLDVSSNKLTLVDDIQNLSR---LEDLWLNDNQIESLES 289
            L +L     +   +   Q   +   + D  +  ++   L  
Sbjct: 408 PLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (307), Expect = 8e-31
 Identities = 76/312 (24%), Positives = 131/312 (41%), Gaps = 32/312 (10%)

Query: 24  LSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
           +S   ++L      ++ S  F   + L ELDLTA  L+ L S +  LS LKKL L  N  
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF 313

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFK---KLSVFDVSFNEITSSHGLSN 138
           ++  +  IS       L  L ++ N           +    L   D+S ++I +S   + 
Sbjct: 314 EN--LCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 139 V---TDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVMEN---LQNLTNLQEL 190
                  L+ L +S NE   +  E  +    L++L+    RL+V +     QNL  L+ L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 191 WLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG-----FEECIALEELYLSHNGISK 242
            L  + + + +     GL  ++ ++LQ N             +    LE L LS   +S 
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 243 MEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
           ++    ++L  ++ +D+S N+LT    + + +L  +  L L  N I  +   +  +    
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQ- 548

Query: 299 ETLTTIYLENNP 310
               TI L  NP
Sbjct: 549 --QRTINLRQNP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  106 bits (267), Expect = 2e-25
 Identities = 58/326 (17%), Positives = 114/326 (34%), Gaps = 38/326 (11%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLI 81
              N   +  +  L+++     P +   L+ + N L ++ +   S L NL  L L +  I
Sbjct: 11  KEVNKTYNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITS--SHGLS 137
               I   + + +   L+ L+L  N L+ + + ++   K L         I+S     L 
Sbjct: 70  YW--IHEDT-FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 138 NVTDTLKELYVSKN--EVPKMEEIEHFHDLQILEFGSNRLRV-----MENLQNLTNLQEL 190
           N   TL+ LY+  N     K+ +      L++L+F +N +       M +LQ  TNL  L
Sbjct: 127 NQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SL 184

Query: 191 WLGRNRIKVVNLCGLKCI--KKISLQSNRLTSMK----GFEECIALEELYLSHNGISKME 244
            L  N I  +          + ++    +   +           +L            + 
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 245 GLS----TLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
                    +++  +++  +    +        S L++L L    +  L S +  +    
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL---- 300

Query: 299 ETLTTIYLENNPQNLQIILLPSDKFS 324
            TL  + L  N    +   L     S
Sbjct: 301 STLKKLVLSAN----KFENLCQISAS 322

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  106 bits (266), Expect = 2e-25
 Identities = 45/290 (15%), Positives = 99/290 (34%), Gaps = 34/290 (11%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLT--ELDLTANRLTSLDSRISHLSNLKKLSLRQNLID 82
            VLD  +  +H L   +       T   L+L  N +  ++      +  + L+       
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFK----KLSVFDVSFNEITSS----- 133
               + +     +  L      D     I            +   ++  +   +      
Sbjct: 216 LVIFKGLKN-STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274

Query: 134 HGLSNVTDTLKELYVSKNEVPKMEE-IEHFHDLQILEFGSNRLRVMEN--LQNLTNLQEL 190
           H  S     L+EL ++   + ++   +     L+ L   +N+   +      N  +L  L
Sbjct: 275 HCFSG----LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 191 WLGRNRIKVVN----LCGLKCIKKISLQSNRLTSM----KGFEECIALEELYLSHNGISK 242
            +  N  ++      L  L+ ++++ L  + + +             L+ L LS+N    
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 243 M--EGLSTLVNLHVLDVSSNKLTLVDD---IQNLSRLEDLWLNDNQIESL 287
           +  E       L +LD++  +L + D     QNL  L+ L L+ + ++  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (256), Expect = 4e-24
 Identities = 55/330 (16%), Positives = 118/330 (35%), Gaps = 38/330 (11%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI---SHLSNLKKLSLR 77
            ++   T   L  F+     ++    +L            +   +       +++ ++L+
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTI---QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 78  QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGL 136
           ++   +  I   + +   +GL+EL L    L ++P  +     L    +S N+  +   +
Sbjct: 263 KHYFFN--ISSNT-FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 137 S-NVTDTLKELYVSKNEVPKMEEIEHFHD---LQILEFGSNRLRVME----NLQNLTNLQ 188
           S +   +L  L +  N            +   L+ L+   + +   +     L+NL++LQ
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 189 ELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG---FEECIALEELYLSHNGISK 242
            L L  N    +          ++ + L   RL        F+    L+ L LSH+ +  
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 243 M--EGLSTLVNLHVLDVSSNKLTLVDDI-----QNLSRLEDLWLNDNQIESLESIVEAVA 295
              +    L  L  L++  N     +       Q L RLE L L+   + S++    A  
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ--HAFT 497

Query: 296 GSRETLTTIYLENNPQNLQIILLPSDKFSQ 325
             +  +  + L +N    ++     +  S 
Sbjct: 498 SLKM-MNHVDLSHN----RLTSSSIEALSH 522

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 26/177 (14%)

Query: 27  TVLDLTSFQLHDLDSVEF---PTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLID 82
            +LDL   +L   D+         L  L+L+ + L     ++   L  L+ L+L+ N   
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVT 140
              I+  +    L  LE L+L    L  I   +    K ++  D+S N +TSS   +   
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
                L ++ N             + I+            L  L+  + + L +N +
Sbjct: 523 LKGIYLNLASNH------------ISIILPSL--------LPILSQQRTINLRQNPL 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (307), Expect = 1e-30
 Identities = 67/305 (21%), Positives = 132/305 (43%), Gaps = 36/305 (11%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
             LDL+   +  L+S  F    +L  L+L  N++  +       L NL+ L+L  NL+ +
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDV--SIFKKLSVFDVSFNEITSSHGLSNVTD 141
             +   + +  L  +  + L+ N +  I D      +KL   D+  N +T+ H + +   
Sbjct: 329 --LYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS--- 382

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN---LQNLTNLQELWLGRNRIK 198
            + ++++S N++  + +I       ++    NRL  ++    L  + +LQ L L +NR  
Sbjct: 383 -IPDIFLSGNKLVTLPKINLT--ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

Query: 199 VV----NLCGLKCIKKISLQSNRLTSMKG-------FEECIALEELYLSHNGISKMEG-- 245
                        ++++ L  N L            FE    L+ LYL+HN ++ +    
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499

Query: 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY 305
            S L  L  L ++SN+LT++      + LE L ++ NQ+ +             +L+ + 
Sbjct: 500 FSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN------PDVFVSLSVLD 553

Query: 306 LENNP 310
           + +N 
Sbjct: 554 ITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 87.2 bits (216), Expect = 7e-19
 Identities = 49/322 (15%), Positives = 99/322 (30%), Gaps = 67/322 (20%)

Query: 45  PTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
                 L L+ N + ++ +     L  L+ L L         I+  + +  L  L  L L
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEA-FRNLPNLRILDL 80

Query: 104 RDNKLMKIPDVSIF---KKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIE 160
             +K+  +     F     L    + F  ++ +                           
Sbjct: 81  GSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGY-------------------FR 120

Query: 161 HFHDLQILEFGSNRLRVME---NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNR 217
           +   L  L+   N++R +    +   L +L+ +    N+I +V    L+ ++  +L    
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 218 LTSMK-------GFEEC------IALEELYLSHNGISKM--------------EGLSTLV 250
           L +          + +C      + LE L +S NG +                  L    
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 251 NLHVLDVSSNKLTLVD----DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYL 306
           ++       + +   D         S +  L L+   + SL S V         L  + L
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD---LKVLNL 297

Query: 307 ENNPQNLQIILLPSDKFSQIYS 328
             N    +I  +  + F  + +
Sbjct: 298 AYN----KINKIADEAFYGLDN 315

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.3 bits (167), Expect = 9e-13
 Identities = 38/203 (18%), Positives = 76/203 (37%), Gaps = 19/203 (9%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             LDL    L  +    F  ++ ++ L+ N+L +L            + L +N +++  +
Sbjct: 365 QTLDLRDNALTTIH---FIPSIPDIFLSGNKLVTLPK---INLTANLIHLSENRLEN--L 416

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSHGLSNVTDT- 142
           + +     +  L+ LIL  N+               L    +  N +  +       D  
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 143 -----LKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
                L+ LY++ N +  +      H   L+ L   SNRL V+ +     NL+ L + RN
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRN 536

Query: 196 RIKVVNLCGLKCIKKISLQSNRL 218
           ++   N      +  + +  N+ 
Sbjct: 537 QLLAPNPDVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 3e-12
 Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 18/212 (8%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFP---TNLTELDLTANRLTSLDSR--ISHLSNLKKLS 75
           +I+L+  ++ L+  +L +LD + F     +L  L L  NR +S       S   +L++L 
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 76  LRQNLIDDAAIEPISRWDALAG---LEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEI 130
           L +N++  A    +  WD   G   L+ L L  N L  +P         L    ++ N +
Sbjct: 458 LGENMLQLAWETELC-WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

Query: 131 TSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQEL 190
           T     +++   L+ L +S+N++      + F  L +L+   N+      L    N    
Sbjct: 517 TVLSH-NDLPANLEILDISRNQLLAPNP-DVFVSLSVLDITHNKFICECELSTFIN---- 570

Query: 191 WLGRNRIKVVNL-CGLKCIKKISLQSNRLTSM 221
           WL    + +      + C+   S     L S+
Sbjct: 571 WLNHTNVTIAGPPADIYCVYPDSFSGVSLFSL 602

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  119 bits (300), Expect = 2e-30
 Identities = 62/279 (22%), Positives = 107/279 (38%), Gaps = 62/279 (22%)

Query: 44  FPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAG---LE 99
            P+N   L+L  N +  + +    HL +L+ L L +N I    IE      A  G   L 
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEV----GAFNGLASLN 126

Query: 100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI 159
            L L DN L  IP          F            LS     L+EL++  N        
Sbjct: 127 TLELFDNWLTVIPS-------GAF----------EYLSK----LRELWLRNNP------- 158

Query: 160 EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGR-NRIKVVN---LCGLKCIKKISLQS 215
                ++ +   +           + +L  L LG   +++ ++     GL  +K ++L  
Sbjct: 159 -----IESIPSYA--------FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 216 NRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNL 271
             +  M      + LEEL +S N   ++       L +L  L V +++++L++      L
Sbjct: 206 CNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265

Query: 272 SRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           + L +L L  N + SL      +      L  ++L +NP
Sbjct: 266 ASLVELNLAHNNLSSLP---HDLFTPLRYLVELHLHHNP 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 2e-21
 Identities = 45/237 (18%), Positives = 90/237 (37%), Gaps = 39/237 (16%)

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPK 155
             +++     L ++P   I       ++  N I    +    ++   L+ L + +N + +
Sbjct: 56  FSKVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHH-LEVLQLGRNSIRQ 113

Query: 156 MEEIEHFHD---LQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVNLCGLKCIKK 210
           +E    F+    L  LE   N L V+ +   + L+ L+ELWL  N I+            
Sbjct: 114 IEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE------------ 160

Query: 211 ISLQSNRLTSMKGFEECIALEELYLSH-NGISKMEG--LSTLVNLHVLDVSSNKLTLVDD 267
            S+ S        F    +L  L L     +  +       L NL  L++    +  + +
Sbjct: 161 -SIPSY------AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213

Query: 268 IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFS 324
           +  L  LE+L ++ N    +     +  G    L  +++ N+    Q+ L+  + F 
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRP--GSFHGLSS-LKKLWVMNS----QVSLIERNAFD 263

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 7e-15
 Identities = 50/228 (21%), Positives = 87/228 (38%), Gaps = 60/228 (26%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
            L++   L+L    L  + S  F   + L EL L  N + S+ S   + + +L +L L +
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 79  NLIDDAAIEPISRWDALAG---LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG 135
                  +E IS   A  G   L+ L L    +  +P+      L               
Sbjct: 181 L----KKLEYISE-GAFEGLFNLKYLNLGMCNIKDMPN---LTPLV-------------- 218

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
                  L+EL +S N                +  GS           L++L++LW+  +
Sbjct: 219 ------GLEELEMSGNH------------FPEIRPGS--------FHGLSSLKKLWVMNS 252

Query: 196 RIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHN 238
           ++ ++      GL  + +++L  N L+S+    F     L EL+L HN
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  119 bits (299), Expect = 2e-30
 Identities = 65/283 (22%), Positives = 112/283 (39%), Gaps = 58/283 (20%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           L  V     TN   L+L  N++  +      HL +L+ L L +N I    IE  + ++ L
Sbjct: 55  LREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGA-FNGL 111

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155
           A L  L L DN+L  IP+         F            LS     LKEL++  N    
Sbjct: 112 ANLNTLELFDNRLTTIPN-------GAF----------VYLSK----LKELWLRNNP--- 147

Query: 156 MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGR-NRIKVVN---LCGLKCIKKI 211
                    ++ +   +           + +L+ L LG   R+  ++     GL  ++ +
Sbjct: 148 ---------IESIPSYA--------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190

Query: 212 SLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD-- 267
           +L    L  +      I L+EL LS N +S +       L++L  L +  +++ +++   
Sbjct: 191 NLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 268 IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
             NL  L ++ L  N +  L      +      L  I+L +NP
Sbjct: 251 FDNLQSLVEINLAHNNLTLLP---HDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.5 bits (230), Expect = 4e-21
 Identities = 47/237 (19%), Positives = 94/237 (39%), Gaps = 39/237 (16%)

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
             ++I     L ++PD  I     + ++  N+I          ++ K L           
Sbjct: 45  FSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKV-----NSFKHL----------- 87

Query: 158 EIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVN---LCGLKCIKKIS 212
                  L+IL+   N +R +E      L NL  L L  NR+  +       L  +K++ 
Sbjct: 88  -----RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142

Query: 213 LQSNRLTSMKG--FEECIALEELYLSH-NGISKMEG--LSTLVNLHVLDVSSNKLTLVDD 267
           L++N + S+    F    +L  L L     +S +       L NL  L+++   L  + +
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202

Query: 268 IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFS 324
           +  L +L++L L+ N + ++     +  G    L  +++  +    QI ++  + F 
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRP--GSFQGLMH-LQKLWMIQS----QIQVIERNAFD 252

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 9e-16
 Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 34/201 (16%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLI-- 81
            +L L+   +  ++   F    NL  L+L  NRLT++ +    +LS LK+L LR N I  
Sbjct: 91  EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150

Query: 82  ------------------DDAAIEPISRWDALAG---LEELILRDNKLMKIPDVSIFKKL 120
                             +   +  IS   A  G   L  L L    L +IP+++   KL
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPNLTPLIKL 209

Query: 121 SVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLR 176
              D+S N +++        +   L++L++ ++++  +E    ++   L  +    N L 
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 177 VMEN--LQNLTNLQELWLGRN 195
           ++ +     L +L+ + L  N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  115 bits (291), Expect = 9e-30
 Identities = 60/309 (19%), Positives = 110/309 (35%), Gaps = 51/309 (16%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
            N +   +S  L+ + S      +  LDL+ NR+T + +       NL+ L L  N I+ 
Sbjct: 32  RNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN- 89

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             IE  S + +L  LE L L  N L  +         S F            LS+    L
Sbjct: 90  -TIEEDS-FSSLGSLEHLDLSYNYLSNLSS-------SWFK----------PLSS----L 126

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEF----GSNRLRVMEN--LQNLTNLQELWLGRNRI 197
             L +  N    + E   F  L  L+       +    ++      LT L+EL +  + +
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 198 KVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKME-------- 244
           +      L  ++ +  + L   +   +     +   ++E L L    +            
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 245 --GLSTLVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETL 301
              L        + ++   L  ++  +  +S L +L  + NQ++S+            +L
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD--GIFDRL-TSL 303

Query: 302 TTIYLENNP 310
             I+L  NP
Sbjct: 304 QKIWLHTNP 312

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  110 bits (278), Expect = 2e-29
 Identities = 28/154 (18%), Positives = 64/154 (41%), Gaps = 6/154 (3%)

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI--- 197
           ++L  + ++   V  +  IE+ H+++ L   +        +  L+NL+ L +    +   
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSD 103

Query: 198 KVVNLCGLKCIKKISLQSNRLT--SMKGFEECIALEELYLSHN-GISKMEGLSTLVNLHV 254
           K+ NL GL  +  + +  +      +        +  + LS+N  I+ +  L TL  L  
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 255 LDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLE 288
           L++  + +     I++  +L  L+     I   +
Sbjct: 164 LNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.5 bits (202), Expect = 2e-18
 Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 26/172 (15%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T + L +  + DL  +E+  N+ +L +     T+ +  IS LSNL++L +    +    I
Sbjct: 47  TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKI 105

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             +S    L  L  L +  +                     + +T  + L      +  +
Sbjct: 106 PNLS---GLTSLTLLDISHSAH-----------------DDSILTKINTLPK----VNSI 141

Query: 147 YVSKN-EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
            +S N  +  +  ++   +L+ L    + +     +++   L +L+     I
Sbjct: 142 DLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 9e-18
 Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 5/131 (3%)

Query: 183 NLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK 242
                    LG++    +    +  +  I+L +  +T + G E    +++L +++   + 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN 80

Query: 243 MEGLSTLVNLHVLDVSSNKLT--LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET 300
              +S L NL  L +    +T   + ++  L+ L  L ++ +  +   SI+  +    + 
Sbjct: 81  YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD--SILTKINTLPK- 137

Query: 301 LTTIYLENNPQ 311
           + +I L  N  
Sbjct: 138 VNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 21/127 (16%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAA 85
             L + +    + + +   +NL  L +    +TS     +S L++L  L +  +  DD+ 
Sbjct: 69  KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 86  IEP--------------------ISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDV 125
           +                      I     L  L+ L ++ + +     +  F KL+    
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188

Query: 126 SFNEITS 132
               I  
Sbjct: 189 FSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDA 84
           T+LD++     D    +      +  +DL+ N   +    +  L  LK L+++ + + D 
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD- 173

Query: 85  AIEPISRWDALAGLEELILRDNKLMKI 111
               I        L +L      +   
Sbjct: 174 -YRGIED---FPKLNQLYAFSQTIGGK 196

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  117 bits (295), Expect = 4e-29
 Identities = 55/372 (14%), Positives = 119/372 (31%), Gaps = 61/372 (16%)

Query: 16  PDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTA-------NRLTSLDSRISHL 68
               ++ D    + DL    ++    ++     + + L         NR+T +   I  L
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447

Query: 69  SNLKKLSLRQNLIDDAAIEPISR----------------WDALAGLEELILRDNKLMKIP 112
           + L+ +    +      I                     W  L  L ++ L +   M   
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507

Query: 113 DVSIF--KKLSVFDVSFNEITSSHGLSNVTDT----------LKELYVSKN---EVPKME 157
              ++   +L   +++ N   S+  L                ++  Y+  N   E P   
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQ 214
            ++    L +L+   N++R +E       L +L L  N+I+ +          ++ +   
Sbjct: 568 SLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627

Query: 215 SNRLTS---MKGFEECIALEELYLSHNGISKME-------GLSTLVNLHVLDVSSNKLTL 264
            N+L     +   +    +  +  S+N I                +N   + +S N++  
Sbjct: 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687

Query: 265 VDD--IQNLSRLEDLWLNDNQIESLE----SIVEAVAGSRETLTTIYLENNPQNLQIILL 318
                    S +  + L++N + S+        +    +   LTTI L  N    ++  L
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN----KLTSL 743

Query: 319 PSDKFSQIYSRL 330
             D  +     L
Sbjct: 744 SDDFRATTLPYL 755

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  115 bits (289), Expect = 2e-28
 Identities = 60/324 (18%), Positives = 114/324 (35%), Gaps = 43/324 (13%)

Query: 27  TVLDLTSFQLHDL-DSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD 83
            +  +    L +   S        L  LD   N++  L++       L  L L  N I++
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEE 609

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITS-----SHG 135
               P         +E L    NKL  IP++        +   D S+N+I S     S  
Sbjct: 610 I---PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 136 LSNVTDT-LKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR---------VMENLQN 183
           + +        + +S NE+ K   E       +  +   +N +             N +N
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 184 LTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHN 238
              L  + L  N++  +        L  +  + +  N  +S          L+   + H 
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786

Query: 239 GISKM--------EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESI 290
             ++          G++T  +L  L + SN +  VD+ +   +L  L + DN   S++  
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE-KLTPQLYILDIADNPNISID-- 843

Query: 291 VEAVAGSRETLTTIYLENNPQNLQ 314
           V +V    E    + L +  Q+++
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDIR 867

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  112 bits (281), Expect = 2e-27
 Identities = 50/326 (15%), Positives = 112/326 (34%), Gaps = 46/326 (14%)

Query: 24  LSNTVLDLTSFQLHDLDSVEFP--TNLTELDLT-ANRLTSLDSRISHLSNLKKLSLRQNL 80
           +     +    + ++ + + +    +LT+++L     +T L   +  L  L+ L++  N 
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 81  IDDAAIEPISRW------DALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEIT 131
              AA             D    ++   +  N L + P  +      KL + D   N++ 
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 132 SSHGLSNVTDTLKELYVSKN---EVPKMEEIEHFHDLQILEFGSNRLRV---MENLQNLT 185
                      L +L +  N   E+P+ +       ++ L F  N+L+    + N +++ 
Sbjct: 587 HLEAFGTNV-KLTDLKLDYNQIEEIPE-DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644

Query: 186 NLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYL 235
            +  +    N+I           +         ++L  N +     + F     +  + L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 236 SHNGIS---------KMEGLSTLVNLHVLDVSSNKLTLVDD---IQNLSRLEDLWLNDNQ 283
           S+N ++         K         L  +D+  NKLT + D      L  L ++ ++ N 
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 284 IESLESIVEAVAGSRETLTTIYLENN 309
             S  +       +   L    + + 
Sbjct: 765 FSSFPT----QPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  103 bits (258), Expect = 2e-24
 Identities = 52/311 (16%), Positives = 97/311 (31%), Gaps = 35/311 (11%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDA 84
           T L L  F             T L  L    +  T              +S  +      
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 85  AIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSV-------FDVSFNEITS-SHGL 136
             + +   D    L    L  + + + P++   KK S             N IT  S  +
Sbjct: 386 HYKKMF-LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 137 SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN-LQNLTNLQELWLGRN 195
             +T  L+ +Y + +      +             + +    E    NL +L ++ L   
Sbjct: 445 QRLTK-LQIIYFANSPFT--YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 196 RIKVV---NLCGLKCIKKISLQSNRLTSM-----------KGFEECIALEELYLSHNGIS 241
                    L  L  ++ +++  NR  S               +    ++  Y+ +N + 
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

Query: 242 KM---EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
           +      L  +V L +LD   NK+  ++      +L DL L+ NQIE +     A     
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ- 620

Query: 299 ETLTTIYLENN 309
             +  +   +N
Sbjct: 621 --VEGLGFSHN 629

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.5 bits (214), Expect = 1e-18
 Identities = 41/278 (14%), Positives = 81/278 (29%), Gaps = 31/278 (11%)

Query: 46  TNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
             +T L L            I  L+ LK LS   +    +              EE   R
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
                K   +   ++L++ D+  + I  +  +  +               K +      D
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI---------------KKDSRISLKD 427

Query: 165 LQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGF 224
            QI    +    + + +Q LT LQ ++   +     N+                     +
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 225 EECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLT-----------LVDDIQNL 271
                L ++ L +        + L  L  L  L+++ N+             L DD    
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 272 SRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
            +++  ++  N +E       A       L  +   +N
Sbjct: 548 PKIQIFYMGYNNLEEF--PASASLQKMVKLGLLDCVHN 583

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.5 bits (183), Expect = 9e-15
 Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 30/242 (12%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQN 79
            +D S   +      +          N + + L+ N +    + + +  S +  + L  N
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 80  LI----DDAAIEPISRWDALAGLEELILRDNKLMKIPD---VSIFKKLSVFDVSFNEITS 132
           L+    +++       +     L  + LR NKL  + D    +    LS  DVS+N  +S
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 133 -SHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQE 189
                 N +  LK   +                    +   NR+       +    +L +
Sbjct: 768 FPTQPLNSSQ-LKAFGIRHQ----------------RDAEGNRILRQWPTGITTCPSLIQ 810

Query: 190 LWLGRNRIKVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEGLS 247
           L +G N I+ V+      +  + +  N   S+        I      L ++    + G  
Sbjct: 811 LQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870

Query: 248 TL 249
            L
Sbjct: 871 AL 872

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (286), Expect = 2e-28
 Identities = 59/305 (19%), Positives = 121/305 (39%), Gaps = 43/305 (14%)

Query: 22  IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
           +D     L+L +  L  L   E P +L  L  + N LT L      L +L   +     +
Sbjct: 69  LDRQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 126

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
                      D    LE L + +N+L K+P++     L + DV  N +     L ++  
Sbjct: 127 ----------SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK---LPDLPP 173

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN 201
           +L+ +    N++ ++ E+++   L  +   +N L+ + +L    +L+ +  G N ++ + 
Sbjct: 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNILEELP 231

Query: 202 -LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM-EGLSTLVNLHVLDVSS 259
            L  L  +  I   +N L ++   +   +LE L +  N ++ + E   +L  L V +   
Sbjct: 232 ELQNLPFLTTIYADNNLLKTLP--DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF 289

Query: 260 NKLT---------------LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTI 304
           + L+               +         LE+L +++N++  L +           L  +
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA-------LPPRLERL 342

Query: 305 YLENN 309
               N
Sbjct: 343 IASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (283), Expect = 5e-28
 Identities = 49/252 (19%), Positives = 105/252 (41%), Gaps = 20/252 (7%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA--------- 96
           T L E    ++ LT +     ++ +  +     +  +  A         +A         
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 97  -GLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155
               EL L +  L  +P+  +   L     S N +T    L  +  +LK L V  N +  
Sbjct: 71  RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLTE---LPELPQSLKSLLVDNNNLKA 125

Query: 156 MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQS 215
           + ++     L+ L   +N+L  +  LQN + L+ + +  N +K +       ++ I+  +
Sbjct: 126 LSDL--PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP-DLPPSLEFIAAGN 182

Query: 216 NRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLE 275
           N+L  +   +    L  +Y  +N + K+  L   ++L  +   +N L  + ++QNL  L 
Sbjct: 183 NQLEELPELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNILEELPELQNLPFLT 240

Query: 276 DLWLNDNQIESL 287
            ++ ++N +++L
Sbjct: 241 TIYADNNLLKTL 252

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (263), Expect = 2e-25
 Identities = 57/303 (18%), Positives = 122/303 (40%), Gaps = 38/303 (12%)

Query: 43  EFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102
           + P  L  L ++ N+L  L   + + S LK + +  N +           D    LE + 
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLK-------KLPDLPPSLEFIA 179

Query: 103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF 162
             +N+L ++P++     L+      N +     L ++  +L+ +    N + ++ E+++ 
Sbjct: 180 AGNNQLEELPELQNLPFLTAIYADNNSLKK---LPDLPLSLESIVAGNNILEELPELQNL 236

Query: 163 HDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-----NLCGLKC---------- 207
             L  +   +N L+ + +L    +L+ L +  N +  +     +L  L            
Sbjct: 237 PFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 294

Query: 208 ----IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263
               +  ++  SN + S+   +   +LEEL +S+N + ++   +    L  L  S N L 
Sbjct: 295 LPPNLYYLNASSNEIRSL--CDLPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLA 350

Query: 264 LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKF 323
            V +      L+ L +  N +     I E+V   R       +   PQNL+ + + ++  
Sbjct: 351 EVPE--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408

Query: 324 SQI 326
            + 
Sbjct: 409 REF 411

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.1 bits (237), Expect = 7e-22
 Identities = 58/305 (19%), Positives = 115/305 (37%), Gaps = 46/305 (15%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             +   + QL +L  ++    LT +    N L  L        +L+ +    N++++   
Sbjct: 176 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL---PDLPLSLESIVAGNNILEE--- 229

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             +     L  L  +   +N L  +PD  +   L   +V  N +T    L  +  +L  L
Sbjct: 230 --LPELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTD---LPELPQSLTFL 282

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCG 204
            VS+N    + E+    +L  L   SN +R + +L    +L+EL +  N++  +      
Sbjct: 283 DVSENIFSGLSEL--PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIELPALPPR 338

Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL-----------------S 247
           L+   ++    N L  +   E    L++L++ +N + +   +                  
Sbjct: 339 LE---RLIASFNHLAEVP--ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393

Query: 248 TLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLE 307
              NL  L V +N L    DI     +EDL +N  ++            + + L     E
Sbjct: 394 LPQNLKQLHVETNPLREFPDI--PESVEDLRMNSERVVDPYEFAHE---TTDKLEDDVFE 448

Query: 308 NNPQN 312
           ++  +
Sbjct: 449 HHHHH 453

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score =  106 bits (267), Expect = 9e-28
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 10/163 (6%)

Query: 150 KNEVPKMEEIEHFHDLQI----LEFGSNRLRVME-NLQNLTNLQELWLGRNRI-KVVNLC 203
           K+ +   EE +     +     L      +  M+  L  L   + L L  N I K+ +L 
Sbjct: 8   KDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLS 67

Query: 204 GLKCIKKISLQSNRLTSMKGFEE-CIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G++ ++ +SL  N +  ++  +     LEEL++S+N I+ + G+  LVNL VL +S+NK+
Sbjct: 68  GMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 127

Query: 263 TLVDDIQNLSR---LEDLWLNDNQIESLESIVEAVAGSRETLT 302
           T   +I  L+    LEDL L  N + +      A +  R  + 
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 77.0 bits (190), Expect = 7e-17
 Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 30/153 (19%)

Query: 48  LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNK 107
             EL      +  +D+ +S L   K L+L  N I+            ++ L  +      
Sbjct: 27  KVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-----------ISSLSGM------ 69

Query: 108 LMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQI 167
                     + L +  +  N I     L  V DTL+EL++S N++  +  IE   +L++
Sbjct: 70  ----------ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119

Query: 168 LEFGSNR---LRVMENLQNLTNLQELWLGRNRI 197
           L   +N+      ++ L  L  L++L L  N +
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 68.2 bits (167), Expect = 9e-14
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 17/169 (10%)

Query: 23  DLSNTVLDLTSFQLHDLD-SVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
           +     L      +  +D ++        L L+ N +  + S +S + NL+ LSL +NLI
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLI 82

Query: 82  DDAAIEPISRWDALAG-LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT 140
                  I   DA+A  LEEL +  N++  +  +     L V  +S N+IT+   +  + 
Sbjct: 83  KK-----IENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 141 D--TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
               L++L ++ N +            +       R+ V++ L NL  L
Sbjct: 138 ALDKLEDLLLAGNPLYN-------DYKENNATSEYRIEVVKRLPNLKKL 179

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  110 bits (278), Expect = 2e-27
 Identities = 74/329 (22%), Positives = 131/329 (39%), Gaps = 65/329 (19%)

Query: 46  TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
           ++L  L L  N+   L++   + L+NL+ L+L Q  +D A +     +  L  LE L+LR
Sbjct: 79  SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF-FKPLTSLEMLVLR 137

Query: 105 DNKLMKIPDVSIF---KKLSVFDVSFNEITSS-------------HGLSNVTDTLKELYV 148
           DN + KI   S F   ++  V D++FN++ S                L   + TL+++  
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVME-----NLQNLTNLQELWLGRNRIKVVNLC 203
                 K         +  L+   N  +        +    T +Q L L  +     +  
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 204 -------------GLKC--IKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKMEG- 245
                        GL+   +K   L  +++ ++    F     LE+L L+ N I+K++  
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317

Query: 246 -LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIES---------------- 286
               L +L  L++S N L  +D    +NL +LE L L+ N I +                
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377

Query: 287 -----LESIVEAVAGSRETLTTIYLENNP 310
                L+S+ + +     +L  I+L  NP
Sbjct: 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 6e-11
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 33/182 (18%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEF----PTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLR 77
           +  N           D D+  F     + +   DL+ +++ +L   + SH ++L++L+L 
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 78  QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLS 137
           QN I    I+  + +  L  L +L L  N L  I          +F+           L 
Sbjct: 308 QNEI--NKIDD-NAFWGLTHLLKLNLSQNFLGSIDS-------RMFE----------NLD 347

Query: 138 NVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLG 193
                L+ L +S N +  + +       +L+ L   +N+L+ + +     LT+LQ++WL 
Sbjct: 348 K----LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403

Query: 194 RN 195
            N
Sbjct: 404 TN 405

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (278), Expect = 5e-27
 Identities = 54/355 (15%), Positives = 120/355 (33%), Gaps = 57/355 (16%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLID 82
           DL    ++    Q     S       T++   +N +T +   +  L+ L++  +  +   
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219

Query: 83  DAAIEPI----------------SRWDALAGLEELILRDNKLMKIPDVSIF--KKLSVFD 124
              I                    +WD L  L ++ + +   +      +    ++ + +
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

Query: 125 VSFNEITS----SHGLSNVTDT-----LKELYVSKN---EVPKMEEIEHFHDLQILEFGS 172
           V+ N   S          + D      ++ +Y+  N     P    ++    L +LE   
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

Query: 173 NRLR-VMENLQNLTNLQELWLGRNRIKVV--NLCG-LKCIKKISLQSNRLTS---MKGFE 225
           N+L   +    +   L  L L  N+I  +  N CG  + ++ +S   N+L     +   +
Sbjct: 340 NQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399

Query: 226 ECIALEELYLSHNGISKM---------EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRL 274
               +  +  S+N I  +               +N+  +++S+N+++    +     S L
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 275 EDLWLNDNQIESLESIVEAVA----GSRETLTTIYLENN-----PQNLQIILLPS 320
             + L  N +  +             +   LT+I L  N       + +   LP 
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  105 bits (265), Expect = 3e-25
 Identities = 59/305 (19%), Positives = 104/305 (34%), Gaps = 43/305 (14%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
             L  L+   N+L            L  L+L  N I +    P +       +E L    
Sbjct: 330 KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI---PANFCGFTEQVENLSFAH 386

Query: 106 NKLMKIPDVSIFKKLS---VFDVSFNEITSSHGLSNVT--------DTLKELYVSKN--- 151
           NKL  IP++   K +S     D S+NEI S  G +             +  + +S N   
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 152 EVPKMEEIEHFHDLQILEFGSNRL---------RVMENLQNLTNLQELWLGRNRIKVV-- 200
           + PK E       L  +    N L            EN +N   L  + L  N++  +  
Sbjct: 447 KFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505

Query: 201 --NLCGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKM--------EGLSTL 249
                 L  +  I L  N  +           L+   + +   ++         EG++  
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 250 VNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
            +L  L + SN +  V++ +    +  L + DN   S+   +  V    E    +   + 
Sbjct: 566 PSLTQLQIGSNDIRKVNE-KITPNISVLDIKDNPNISI--DLSYVCPYIEAGMYMLFYDK 622

Query: 310 PQNLQ 314
            Q+++
Sbjct: 623 TQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.2 bits (245), Expect = 1e-22
 Identities = 44/331 (13%), Positives = 113/331 (34%), Gaps = 36/331 (10%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTEL----DLTANRLTSLDSRISHLSNLKKLSLRQNLI- 81
            VL L S      + +  P  ++           R+    + + +        L ++ I 
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 82  DDAAIEPISRWDALA-GLEELILRDNKLMKIPDVSIFK--KLSVFDVSFNEITSSHGLSN 138
            D   + I +   +     ++    N +  +   ++ +  KL  F +  +   + +    
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL--RVMENLQNLTNLQELWLGRNR 196
             +   E            + ++  DL  +E  +     ++   L+ L  +Q + +  NR
Sbjct: 227 WENENSEYAQQYKTED--LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284

Query: 197 IKVV-----------NLCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISK 242
                          +    + I+ I +  N L +       ++   L  L   +N +  
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG 344

Query: 243 -MEGLSTLVNLHVLDVSSNKLT-LVDDI-QNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299
            +    + + L  L+++ N++T +  +      ++E+L    N+++ + +I +  A S  
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD--AKSVS 402

Query: 300 TLTTIYLENNPQNLQIILLPSDKFSQIYSRL 330
            ++ I    N    +I  +    F  +    
Sbjct: 403 VMSAIDFSYN----EIGSVDGKNFDPLDPTP 429

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 35/292 (11%), Positives = 87/292 (29%), Gaps = 37/292 (12%)

Query: 46  TNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
             +T L L     +  +   I  L+ L+ L+L  +       E +     ++       +
Sbjct: 81  GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV--NERLFGPKGISANMSDEQK 138

Query: 105 DNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTD------TLKELYVSKN---EV 153
               M      +    +    D+  + I S     ++           ++    N    V
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 154 PKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISL 213
            K   +     L+    G++        +   N    +  + + + +    LK +  + +
Sbjct: 199 SK--AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 214 QSNRLTSM--KGFEECIALEELYLSHN----------GISKMEGLSTLVNLHVLDVSSNK 261
            +    +      +    ++ + ++ N              +        + ++ +  N 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 262 LTLV---DDIQNLSRLEDLWLNDNQIESL-ESIVEAVAGSRETLTTIYLENN 309
           L        +Q + +L  L    NQ+E    +      GS   L ++ L  N
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-----GSEIKLASLNLAYN 363

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 42/237 (17%), Positives = 83/237 (35%), Gaps = 39/237 (16%)

Query: 46  TNLTELDLTANRLTSLDSR--------ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           + ++ +D + N + S+D +             N+  ++L  N I      P   +   + 
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK---FPKELFSTGSP 458

Query: 98  LEELILRDNKLMKIPDVSIF---------KKLSVFDVSFNEITS---SHGLSNVTDTLKE 145
           L  + L  N L +IP  S+            L+  D+ FN++T        + +   L  
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY-LVG 517

Query: 146 LYVSKN---EVPKMEEIEHFHDLQILEFGSNRLRVM--------ENLQNLTNLQELWLGR 194
           + +S N   + P   +  +   L+     + R            E +    +L +L +G 
Sbjct: 518 IDLSYNSFSKFP--TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 195 NRIKVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEGLSTL 249
           N I+ VN      I  + ++ N   S+        I      L ++    + G   L
Sbjct: 576 NDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 27  TVLDLTSFQLHDL-DSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD 83
           T +DL   +L  L D         L  +DL+ N  +   ++  + S LK   +R      
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 84  A--AIEPISRW-DALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS 132
               +            L +L +  N + K+ +  I   +SV D+  N   S
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE-KITPNISVLDIKDNPNIS 601

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  110 bits (276), Expect = 8e-27
 Identities = 65/288 (22%), Positives = 110/288 (38%), Gaps = 35/288 (12%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T L +    L  L     P  L  L+++ N+LTSL      L  L   S     +     
Sbjct: 64  TTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP---- 117

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
                    +GL +L +  N+L  +P   +   L    VS N++ S   L  +   L +L
Sbjct: 118 ------ALPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS---LPALPSELCKL 166

Query: 147 YVSKNEVPKMEEI-EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGL 205
           +   N   ++  +      LQ L    N+L  +  L   + L +LW   NR+  +     
Sbjct: 167 WAYNN---QLTSLPMLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLP-ALP 220

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT-L 264
             +K++ +  NRLTS+        L+EL +S N ++ +        L  L V  N+LT L
Sbjct: 221 SGLKELIVSGNRLTSL--PVLPSELKELMVSGNRLTSLP--MLPSGLLSLSVYRNQLTRL 276

Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQN 312
            + + +LS    + L  N +                +T+    + P  
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQA------LREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (259), Expect = 2e-24
 Identities = 64/285 (22%), Positives = 111/285 (38%), Gaps = 45/285 (15%)

Query: 44  FPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
                  L++  + LT+L   +   +++  L +  N +                L  L +
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLP-------ALPPELRTLEV 88

Query: 104 RDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG--------------LSNVTDTLKELYV 148
             N+L  +P       +LS+F      + +                 L  +   L+EL V
Sbjct: 89  SGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSV 148

Query: 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLK 206
           S N++  +  +    +L  L   +N+L  +  L   + LQEL +  N++  +      L 
Sbjct: 149 SDNQLASLPAL--PSELCKLWAYNNQLTSLPML--PSGLQELSVSDNQLASLPTLPSEL- 203

Query: 207 CIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVD 266
              K+   +NRLTS+        L+EL +S N ++ +        L  L VS N+LT + 
Sbjct: 204 --YKLWAYNNRLTSLP--ALPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLP 257

Query: 267 DIQNLSRLEDLWLNDNQIESL-ESIVEAVAGSRETLTTIYLENNP 310
                S L  L +  NQ+  L ES+         + TT+ LE NP
Sbjct: 258 M--LPSGLLSLSVYRNQLTRLPESL-----IHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.8 bits (194), Expect = 3e-16
 Identities = 61/297 (20%), Positives = 103/297 (34%), Gaps = 41/297 (13%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHL-----------------S 69
             L +   QL  L     P  L EL ++ N+L SL +  S L                 S
Sbjct: 124 CKLWIFGNQLTSLP--VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPS 181

Query: 70  NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNE 129
            L++LS+  N +       +      + L +L   +N+L  +P  ++   L    VS N 
Sbjct: 182 GLQELSVSDNQLAS-----LP--TLPSELYKLWAYNNRLTSLP--ALPSGLKELIVSGNR 232

Query: 130 ITSSHGLSNVTDTLKELYVSKNEVPKMEEI-EHFHDLQILEFGSNRLRVM-ENLQNLTNL 187
           +TS   L  +   LKEL VS N   ++  +      L  L    N+L  + E+L +L++ 
Sbjct: 233 LTS---LPVLPSELKELMVSGN---RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSE 286

Query: 188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSM-----KGFEECIALEELYLSHNGISK 242
             + L  N +    L  L+ I      S  +            E  AL          ++
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

Query: 243 MEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299
               +     H+     N       +  LS  E+   +      + S +  +A    
Sbjct: 347 EGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEA 403

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  109 bits (275), Expect = 1e-26
 Identities = 61/307 (19%), Positives = 108/307 (35%), Gaps = 29/307 (9%)

Query: 24  LSNTVLDLTSFQLHDLDSVEFP---TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
           L+     L     +  D ++     TN++   L +  +  +    S+    + L L    
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCK 315

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNV- 139
                   +     L  L+ L    NK            L   D+S N ++     S   
Sbjct: 316 FGQ--FPTLK----LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 140 --TDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM---ENLQNLTNLQELWLG 193
             T +LK L +S N V  M         L+ L+F  + L+ M       +L NL  L + 
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 194 RNRIKVVN---LCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKM--EG 245
               +V       GL  ++ + +  N          F E   L  L LS   + ++    
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 246 LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT 303
            ++L +L VL++S N    +D    + L+ L+ L  + N I +     + +     +L  
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS--KKQELQHFPSSLAF 547

Query: 304 IYLENNP 310
           + L  N 
Sbjct: 548 LNLTQND 554

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  101 bits (254), Expect = 6e-24
 Identities = 61/334 (18%), Positives = 117/334 (35%), Gaps = 42/334 (12%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPT-----NLTELDLTANRLTSLD-------SRISHLSNLK 72
              V  L   +  +  ++E         L  L +   RL  LD          + L+N+ 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 73  KLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS 132
             SL    I+   ++  S      G + L L + K  + P     K L     + N+  +
Sbjct: 286 SFSLVSVTIER--VKDFSY---NFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGN 339

Query: 133 SHGLSNVTDTLKELYVSKN----EVPKMEEIEHFHDLQILEFGSNRLR-VMENLQNLTNL 187
           +    ++  +L+ L +S+N    +    +       L+ L+   N +  +  N   L  L
Sbjct: 340 AFSEVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 188 QELWLGRNRIKVVN----LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGIS 241
           + L    + +K ++       L+ +  + +            F    +LE L ++ N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 242 KM---EGLSTLVNLHVLDVSSNKLT--LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAG 296
           +    +  + L NL  LD+S  +L         +LS L+ L ++ N   SL++       
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 297 SRETLTTIYLENNPQNLQIILLPSDKFSQIYSRL 330
           S   L  +    N     I+     +     S L
Sbjct: 519 S---LQVLDYSLN----HIMTSKKQELQHFPSSL 545

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (251), Expect = 2e-23
 Identities = 54/299 (18%), Positives = 103/299 (34%), Gaps = 35/299 (11%)

Query: 27  TVLDLTSFQLHDLDSVEF------PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
             LDL+S ++  +   +       P     LDL+ N +  +         L KL+LR N 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKL-----MKIPDVSIFKKLSVFDVSFNEITSSHG 135
                ++       LAGLE   L   +      ++  D S  + L    +    +     
Sbjct: 212 DSLNVMKTCI--QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
             +    L                    ++      S  +  +++       Q L L   
Sbjct: 270 YLDDIIDL---------------FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 196 RIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM----EGLSTLVN 251
           +        LK +K+++  SN+  +     +  +LE L LS NG+S      +      +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 252 LHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
           L  LD+S N +  +  +   L +LE L    + ++ +     +V  S   L  + + + 
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHT 431

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.5 bits (238), Expect = 7e-22
 Identities = 57/278 (20%), Positives = 94/278 (33%), Gaps = 27/278 (9%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           +   L S  +  +    +      L+L   +     +    L +LK+L+   N   +   
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN--- 339

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIF----KKLSVFDVSFNEITSSHGLSNVTDT 142
                   L  LE L L  N L      S        L   D+SFN + +        + 
Sbjct: 340 --AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 143 LKELYVSKNEVPKMEEIEHFHD---LQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRI 197
           L+ L    + + +M E   F     L  L+      RV  N     L++L+ L +  N  
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 198 KVV----NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG--LSTL 249
           +          L+ +  + L   +L  +    F    +L+ L +SHN    ++      L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 250 VNLHVLDVSSNKLTLVDD---IQNLSRLEDLWLNDNQI 284
            +L VLD S N +            S L  L L  N  
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 51/283 (18%), Positives = 99/283 (34%), Gaps = 46/283 (16%)

Query: 24  LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR---ISHLSNLKKLSLRQNL 80
            S   L  TS +  +  S     +L  LDL+ N L+            ++LK L L  N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITSSHGLS 137
           +    I   S +  L  LE L  + + L ++ + S+F  L      D+S      +    
Sbjct: 385 V----ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-- 438

Query: 138 NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR---VMENLQNLTNLQELWLGR 194
                                      L++L+   N  +   + +    L NL  L L +
Sbjct: 439 -------------------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 195 NRIKVVN---LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHN---GISKMEGL 246
            +++ ++      L  ++ +++  N   S+    ++   +L+ L  S N      K E  
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 247 STLVNLHVLDVSSNKLT----LVDDIQNLSRLEDLWLNDNQIE 285
               +L  L+++ N           +Q +     L +   ++E
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 61/304 (20%), Positives = 106/304 (34%), Gaps = 64/304 (21%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLI 81
            + N          + +     P +   LDL+ N L  L S        L+ L L +  I
Sbjct: 6   VVPNITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
               IE  + + +L+ L  LIL  N +  +   +                   GLS+   
Sbjct: 65  QT--IEDGA-YQSLSHLSTLILTGNPIQSLALGAF-----------------SGLSS--- 101

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKV 199
                                  LQ L      L  +EN  + +L  L+EL +  N I+ 
Sbjct: 102 -----------------------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 200 VNL----CGLKCIKKISLQSNRLTSMKG--FEECIALE----ELYLSHNGISKME-GLST 248
             L      L  ++ + L SN++ S+          +      L LS N ++ ++ G   
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 249 LVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY 305
            + LH L + +N  +L      IQ L+ LE   L   +  +  ++ +    + E L  + 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 306 LENN 309
           +E  
Sbjct: 259 IEEF 262

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  108 bits (271), Expect = 3e-26
 Identities = 58/278 (20%), Positives = 115/278 (41%), Gaps = 22/278 (7%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTN-LTELDLTANRLTSLD----SRISHLSNLKKLSLRQN 79
            + + D +  +L  L       + +   D T N L   +      +S L  ++ +++R+ 
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 80  LIDDAAIEPISRW--DALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITS--- 132
            I    +          L  ++ + + ++K+  +P       K L   D+S N +     
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 133 -SHGLSNVTDTLKELYVSKNEVPKMEEI----EHFHDLQILEFGSNRLRVM-ENLQNLTN 186
            +        +L+ L +S+N +  M++         +L  L+   N    M ++ Q    
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411

Query: 187 LQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL 246
           ++ L L    I+VV  C  + ++ + + +N L S   F     L+ELY+S N +  +   
Sbjct: 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLP--RLQELYISRNKLKTLPDA 469

Query: 247 STLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDN 282
           S    L V+ +S N+L  V D     L+ L+ +WL+ N
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (261), Expect = 7e-25
 Identities = 65/311 (20%), Positives = 115/311 (36%), Gaps = 37/311 (11%)

Query: 29  LDLTSFQLHDLDSVEFPTNLTEL--------DLTANRLTSLDSRISHLSNLKKLSLRQNL 80
            +L  FQ   L   E  + + +L        D + N L  L   I  LS ++      N 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSI-------FKKLSVFDVSFNEITS- 132
           + D           L  +E + +R   + +              +K+    V  +++   
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 133 SHGLSNVTDTLKELYVSKNE-----VPKMEEIEHFHDLQILEFGSNRLRVMEN----LQN 183
               S    +L+ L +S+N      +        +  LQ L    N LR M+     L  
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 184 LTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKGFEECI--ALEELYLSHNG 239
           L NL  L + RN    +  +    + ++ ++L S  +      + CI   LE L +S+N 
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNN 442

Query: 240 ISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299
           +        L  L  L +S NKL  + D      L  + ++ NQ++S+    + +     
Sbjct: 443 LDSFS--LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVP---DGIFDRLT 497

Query: 300 TLTTIYLENNP 310
           +L  I+L  NP
Sbjct: 498 SLQKIWLHTNP 508

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.9 bits (218), Expect = 2e-19
 Identities = 54/338 (15%), Positives = 117/338 (34%), Gaps = 48/338 (14%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83
           ++ V D  S     + S      +  LDL+ N++T +    +   +NL+ L L+ + I+ 
Sbjct: 6   ASGVCDGRSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITS--SHGLSNV 139
             IE  + + +L  LE L L DN L  +          L   ++  N   +     L   
Sbjct: 65  --IEGDA-FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 140 TDTLKELYVSKN---EVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGR 194
              L+ L +         +  +      L  LE  +  LR  ++  L+++ ++  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 195 NRIKVVNLC---GLKCIKKISLQSNRLTSMK-----GFEECIALEELYLSHNGISKM--- 243
           +    +       L  ++ + L+   L   +       E    +++L    + ++     
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 244 ------EGLSTLVNLHVLDVSSNKLTLVDDIQN----------LSRLEDLWLNDNQIESL 287
                   +  L  +   D + N L   +  ++             +  L +    +   
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 288 ESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQ 325
            S V ++      +  I +EN+    ++ L+P      
Sbjct: 302 LSTVYSLLEK---VKRITVENS----KVFLVPCSFSQH 332

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 17/183 (9%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR---ISHLSNLKKLSLR 77
            +DLS     +    L +        +L  L L+ N L S+      +  L NL  L + 
Sbjct: 338 FLDLSEN--LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 78  QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS-SHGL 136
           +N      +    +W     +  L L    +  +    I + L V DVS N + S S  L
Sbjct: 396 RNTFHP--MPDSCQW--PEKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSLFL 450

Query: 137 SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV--MENLQNLTNLQELWLGR 194
                 L+ELY+S+N++  + +   F  L +++   N+L+         LT+LQ++WL  
Sbjct: 451 PR----LQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

Query: 195 NRI 197
           N  
Sbjct: 507 NPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.3 bits (175), Expect = 9e-14
 Identities = 32/180 (17%), Positives = 65/180 (36%), Gaps = 20/180 (11%)

Query: 162 FHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSN 216
              ++ L+   N++  + +  L+   NLQ L L  +RI  +       L  ++ + L  N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 217 RLTSMKG--FEECIALEELYLSHNGISKMEG---LSTLVNLHVLDVSS-NKLTLV--DDI 268
            L+S+    F    +L+ L L  N    +        L NL  L + +    + +   D 
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 269 QNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYS 328
             L+ L +L +    + + +S           +  + L  +    +   L       + S
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRD---IHHLTLHLS----ESAFLLEIFADILSS 197

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  106 bits (267), Expect = 1e-25
 Identities = 67/348 (19%), Positives = 115/348 (33%), Gaps = 56/348 (16%)

Query: 24  LSNTVLDLTSFQLHDLDSVEF-PTNLTELDLTANRLTS--LDSRISHLSNLKKLSLRQNL 80
           L N  LDL+   ++ +    F    L +L L  N  +   + + I  L+ L+   L    
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDV--------SIFKKLSVFDVSFNEITS 132
             +          AL GL  L + + +L  +           +    +S F +    I  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 133 SHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWL 192
               S      + L +   +  +   +     L+ L F SN+     +  +L +L+ L L
Sbjct: 297 VKDFSYNF-GWQHLELVNCKFGQFPTL-KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354

Query: 193 GRNRIKVVNLC-----GLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKM--- 243
            RN +     C     G   +K + L  N + +M   F     LE L   H+ + +M   
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 244 ------------------------EGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLED 276
                                      + L +L VL ++ N        D    L  L  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFS 324
           L L+  Q+E L         S   L  + + +N    Q+  +P   F 
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSS---LQVLNMASN----QLKSVPDGIFD 515

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  104 bits (261), Expect = 8e-25
 Identities = 57/315 (18%), Positives = 108/315 (34%), Gaps = 39/315 (12%)

Query: 27  TVLDLTSFQLHDLDSVEF------PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
             LDL+S ++  +   +       P     LDL+ N +  +         L KL+LR N 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

Query: 81  IDDAAIEPISRWDALAGLEELIL-----RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG 135
                ++       LAGLE   L     R+   ++  D S  + L    +    +     
Sbjct: 212 DSLNVMKTCI--QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
             +    L                    ++      S  +  +++       Q L L   
Sbjct: 270 YLDDIIDL---------------FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 196 RIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS----TLVN 251
           +        LK +K+++  SN+  +     +  +LE L LS NG+S     S       +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 252 LHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           L  LD+S N +  +  +   L +LE L    + ++ +     +V  S   L  + + +  
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHT- 431

Query: 311 QNLQIILLPSDKFSQ 325
                 +  +  F+ 
Sbjct: 432 ---HTRVAFNGIFNG 443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  104 bits (261), Expect = 9e-25
 Identities = 61/279 (21%), Positives = 102/279 (36%), Gaps = 26/279 (9%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLID 82
           +     LD     + DL +    TN++   L +  +  +    S+    + L L      
Sbjct: 261 EFRLAYLDYYLDDIIDLFNC--LTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFG 317

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNV--- 139
                       L  L+ L    NK            L   D+S N ++     S     
Sbjct: 318 QF------PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 140 TDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVMEN---LQNLTNLQELWLGRN 195
           T +LK L +S N V  M         L+ L+F  + L+ M       +L NL  L +   
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 196 RIKVVN---LCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKMEG--LS 247
             +V       GL  ++ + +  N          F E   L  L LS   + ++     +
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 248 TLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQI 284
           +L +L VL+++SN+L  V D     L+ L+ +WL+ N  
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  103 bits (259), Expect = 1e-24
 Identities = 61/328 (18%), Positives = 108/328 (32%), Gaps = 40/328 (12%)

Query: 21  EIDLSNTVL--DLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLR 77
           ++ L N     ++    +  L  +E    +         L   D S +  L NL     R
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 78  QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLS 137
              +D    + I  ++ L  +    L    + ++ D S        ++   +      L 
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 138 NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME----NLQNLTNLQELWLG 193
               +LK L  + N+            L+ L+   N L        +    T+L+ L L 
Sbjct: 324 --LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 194 RNRIKVV--NLCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKM--EGL 246
            N +  +  N  GL+ ++ +  Q + L  M     F     L  L +SH           
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 247 STLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIES----------------- 286
           + L +L VL ++ N        D    L  L  L L+  Q+E                  
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 287 ----LESIVEAVAGSRETLTTIYLENNP 310
               L+S+ + +     +L  I+L  NP
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.8 bits (210), Expect = 3e-18
 Identities = 60/302 (19%), Positives = 107/302 (35%), Gaps = 60/302 (19%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLI 81
            + N          + +     P +   LDL+ N L  L S        L+ L L +  I
Sbjct: 6   VVPNITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
               IE  + + +L+ L  LIL  N +  +     F  LS                    
Sbjct: 65  QT--IEDGA-YQSLSHLSTLILTGNPIQSLAL-GAFSGLS-------------------- 100

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN 201
           +L++L   +              L  LE           + +L  L+EL +  N I+   
Sbjct: 101 SLQKLVAVETN------------LASLENFP--------IGHLKTLKELNVAHNLIQSFK 140

Query: 202 L----CGLKCIKKISLQSNRLTSMKGFEEC------IALEELYLSHNGISKME-GLSTLV 250
           L      L  ++ + L SN++ S+   +        +    L LS N ++ ++ G    +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 251 NLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLE 307
            LH L + +N  +L      IQ L+ LE   L   +  +  ++ +    + E L  + +E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 308 NN 309
             
Sbjct: 261 EF 262

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 22/224 (9%)

Query: 137 SNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWL 192
            N+  + K L +S N +  +       F +LQ+L+     ++ +E+   Q+L++L  L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 193 GRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKM---E 244
             N I+ +      GL  ++K+      L S++         L+EL ++HN I      E
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 245 GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLE----DLWLNDNQIESLESIVEAVAGSR 298
             S L NL  LD+SSNK+  +   D++ L ++      L L+ N +  ++      A   
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG----AFKE 199

Query: 299 ETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVL 342
             L  + L NN  +L ++       + +    +++  FR+   L
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 99.7 bits (249), Expect = 2e-24
 Identities = 65/280 (23%), Positives = 104/280 (37%), Gaps = 74/280 (26%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           L +V    P     + L  NR++ + +       NL  L L  N++  A I+  + +  L
Sbjct: 23  LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAA-FTGL 79

Query: 96  AGLEELILRDN-KLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP 154
           A LE+L L DN +L  +         + F          HGL      L  L++ +    
Sbjct: 80  ALLEQLDLSDNAQLRSVDP-------ATF----------HGLGR----LHTLHLDRCG-- 116

Query: 155 KMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQ 214
                     LQ L  G          + L  LQ L+L  N ++ +              
Sbjct: 117 ----------LQELGPGL--------FRGLAALQYLYLQDNALQAL-------------- 144

Query: 215 SNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQN 270
                    F +   L  L+L  N IS +       L +L  L +  N++  V     ++
Sbjct: 145 -----PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 271 LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           L RL  L+L  N + +L +  EA+A  R  L  + L +NP
Sbjct: 200 LGRLMTLYLFANNLSALPT--EALAPLR-ALQYLRLNDNP 236

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.3 bits (243), Expect = 3e-22
 Identities = 70/309 (22%), Positives = 123/309 (39%), Gaps = 36/309 (11%)

Query: 27  TVLDLTSFQLH-DLDSVEFPTNLTELDLTANRLT---SLDSRISHLSNLKKLSLRQNLID 82
             L L++  ++  +   +   +LT LDL+ N L+   +  + +   S LK L++  N +D
Sbjct: 80  ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

Query: 83  DAAIEPISRWDALAGLEELILRDNKL-----MKIPDVSIFKKLSVFDVSFNEITSSHGLS 137
                 +S    L  LE L L  N +     +         +L    +S N+I+    +S
Sbjct: 140 FP--GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 197

Query: 138 NVTDTLKELYVSKN----EVPKMEEIEHFHDLQILEFGSNRL--RVMENLQNLTNLQELW 191
                L+ L VS N     +P    +     LQ L+   N+L       +   T L+ L 
Sbjct: 198 RCV-NLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 192 LGRNRIK-VVNLCGLKCIKKISLQSNRLT-----SMKGFEECIALEELYLSHNGISKM-- 243
           +  N+    +    LK ++ +SL  N+ T      + G   C  L  L LS N       
Sbjct: 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSG--ACDTLTGLDLSGNHFYGAVP 311

Query: 244 EGLSTLVNLHVLDVSSNKLT---LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET 300
               +   L  L +SSN  +    +D +  +  L+ L L+ N+      + E++     +
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSAS 369

Query: 301 LTTIYLENN 309
           L T+ L +N
Sbjct: 370 LLTLDLSSN 378

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.2 bits (235), Expect = 3e-21
 Identities = 65/311 (20%), Positives = 112/311 (36%), Gaps = 38/311 (12%)

Query: 27  TVLDLTSFQLHDLDSVEFP-----TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
           T +DL+S  L+   S         T L  L L+ + +    S     ++L  L L +N +
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL 112

Query: 82  DDAAIEPISRWDALAGLEELILRDNKL---MKIPDVSIFKKLSVFDVSFN----EITSSH 134
               +  ++   + +GL+ L +  N L    K+        L V D+S N          
Sbjct: 113 SG-PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 135 GLSNVTDTLKELYVSKN----EVPKMEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQE 189
            LS+    LK L +S N    +V     +    +L+ L+  SN     +  L + + LQ 
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQH 227

Query: 190 LWLGRNRIK------VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS-- 241
           L +  N++       +     L   K +++ SN+           +L+ L L+ N  +  
Sbjct: 228 LDISGNKLSGDFSRAISTCTEL---KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGE 284

Query: 242 -KMEGLSTLVNLHVLDVSSNKLT--LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
                      L  LD+S N     +     + S LE L L+ N       +        
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG--ELPMDTLLKM 342

Query: 299 ETLTTIYLENN 309
             L  + L  N
Sbjct: 343 RGLKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 58/288 (20%), Positives = 108/288 (37%), Gaps = 33/288 (11%)

Query: 46  TNLTELDLTANRLT----SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101
             +T +DL++  L     ++ S +  L+ L+ L L  + I+      +S +   A L  L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING----SVSGFKCSASLTSL 105

Query: 102 ILRDNKLM-KIPDVSIF---KKLSVFDVSFNEITSSHGLSNVTD--TLKELYVSKNE--- 152
            L  N L   +  ++       L   +VS N +     +S      +L+ L +S N    
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 153 --VPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI--KVVNLCGLKCI 208
             V      +   +L+ L    N++    ++    NL+ L +  N     +  L     +
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSAL 225

Query: 209 KKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT--L 264
           + + +  N+L+    +    C  L+ L +S N          L +L  L ++ NK T  +
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI 285

Query: 265 VDDIQ-NLSRLEDLWLNDNQIESL--ESIVEAVAGSRETLTTIYLENN 309
            D +      L  L L+ N               GS   L ++ L +N
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFF-----GSCSLLESLALSSN 328

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 7e-17
 Identities = 63/307 (20%), Positives = 99/307 (32%), Gaps = 49/307 (15%)

Query: 46  TNLTELDLTANRLTSL--DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
           + L  L L++N  +       +  +  LK L L  N        P S  +  A L  L L
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL--PESLTNLSASLLTLDL 375

Query: 104 RDNKLM-KIPD---VSIFKKLSVFDVSFNEITSS--HGLSNVTDTLKELYVSKN----EV 153
             N     I      +    L    +  N  T      LSN ++ L  L++S N     +
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTI 434

Query: 154 PKMEEIEHFHDLQILEFGSNRL--RVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCI 208
           P    +     L+ L+   N L   + + L  +  L+ L L  N +       L     +
Sbjct: 435 P--SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492

Query: 209 KKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLT- 263
             ISL +NRLT    K       L  L LS+N  S      L    +L  LD+++N    
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 264 ---------------------LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT 302
                                    I+N    ++     N +E      E +     T  
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL-NRLSTRN 611

Query: 303 TIYLENN 309
              + + 
Sbjct: 612 PCNITSR 618

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 55/262 (20%), Positives = 96/262 (36%), Gaps = 32/262 (12%)

Query: 46  TNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRW-DALAGLEELIL 103
             L  L L  N LT  + S +S+ +NL  +SL  N +       I +W   L  L  L L
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG----EIPKWIGRLENLAILKL 521

Query: 104 RDNKLM-KIPD-VSIFKKLSVFDVSFNEITSS--HGLSNVTDTLKELYVSKNEVPKMEEI 159
            +N     IP  +   + L   D++ N    +    +   +  +   +++  +      I
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA-GKRY--VYI 578

Query: 160 EHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRIK---VVNLCGLKCIKKIS 212
           ++    +      N L       E L  L+      +                  +  + 
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 213 LQSNRLTSM--KGFEECIALEELYLSHNGISKMEG-----LSTLVNLHVLDVSSNKLT-- 263
           +  N L+    K       L  L L HN IS   G     +  L  L++LD+SSNKL   
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDIS---GSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 264 LVDDIQNLSRLEDLWLNDNQIE 285
           +   +  L+ L ++ L++N + 
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLS 717

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.5 bits (233), Expect = 9e-22
 Identities = 50/303 (16%), Positives = 95/303 (31%), Gaps = 41/303 (13%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
           +                 R ++ +N +  +     +  A  + +       G   L LR 
Sbjct: 33  SQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDA-TQPGRVALELRS 90

Query: 106 NKLMKIPDVSIF--KKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKN---EVPKMEEI 159
             L + PD   F    L    +    +      +      L+ L +++N    +P    I
Sbjct: 91  VPLPQFPD-QAFRLSHLQHMTIDAAGLMELPDTMQQFAG-LETLTLARNPLRALP--ASI 146

Query: 160 EHFHDLQILEFGSN-----------RLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLK 206
              + L+ L   +                    Q L NLQ L L    I+ +  ++  L+
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ 206

Query: 207 CIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKMEGL----STLVNLHVLDVSS-N 260
            +K + ++++ L+++         LEEL L     + +            L  L +   +
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC--TALRNYPPIFGGRAPLKRLILKDCS 264

Query: 261 KLTLV-DDIQNLSRLEDLWLNDN-QIESL-ESIVEAVAGSRETLTTIYLENNPQNLQIIL 317
            L  +  DI  L++LE L L     +  L   I             I +  + Q      
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-----AQLPANCIILVPPHLQAQLDQH 319

Query: 318 LPS 320
            P 
Sbjct: 320 RPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 46/252 (18%), Positives = 94/252 (37%), Gaps = 36/252 (14%)

Query: 27  TVLDLTSFQLHDL-DSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD-- 83
             L+L S  L    D     ++L  + + A  L  L   +   + L+ L+L +N +    
Sbjct: 84  VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP 143

Query: 84  AAIEPISRWDALAGLEELILRD-NKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDT 142
           A+I       +L  L EL +R   +L ++P+                  +S     +   
Sbjct: 144 ASIA------SLNRLRELSIRACPELTELPE------------PLASTDASGEHQGLV-N 184

Query: 143 LKELYVSKN---EVPKMEEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQELWL-GRNRI 197
           L+ L +       +P    I +  +L+ L+  ++ L  +   + +L  L+EL L G   +
Sbjct: 185 LQSLRLEWTGIRSLP--ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242

Query: 198 KVV--NLCGLKCIKKISLQS-NRLTSM-KGFEECIALEELYLSHNGISKM--EGLSTLVN 251
           +       G   +K++ L+  + L ++         LE+L L            ++ L  
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 252 LHVLDVSSNKLT 263
             ++ V  +   
Sbjct: 303 NCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 45/278 (16%), Positives = 100/278 (35%), Gaps = 37/278 (13%)

Query: 58  LTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIP-DVSI 116
           + S      H S  + L  + +     A+ P    D L+  +     D          + 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGS----TALRPY--HDVLSQWQRHYNADRNRWHSAWRQAN 54

Query: 117 FKKLSVFDVSFNEITSSHG-LSNVTDT-LKELYVSKN---EVPKMEEIEHFHDLQILEFG 171
                +   +   + ++   L + T      L +      + P  ++      LQ +   
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP--DQAFRLSHLQHMTID 112

Query: 172 SNRLRVM-ENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSN-----------R 217
           +  L  + + +Q    L+ L L RN ++ +  ++  L  ++++S+++             
Sbjct: 113 AAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 218 LTSMKGFEECIALEELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLT-LVDDIQNLSRLE 275
             +    +  + L+ L L   GI  +   ++ L NL  L + ++ L+ L   I +L +LE
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232

Query: 276 DLWLND-NQIESL-ESIVEAVAGSRETLTTIYLENNPQ 311
           +L L     + +          G R  L  + L++   
Sbjct: 233 ELDLRGCTALRNYPPIF-----GGRAPLKRLILKDCSN 265

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 91.2 bits (227), Expect = 2e-21
 Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 54/257 (21%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
              +    P +   LDL+ N L  L S        L+ L L +  I    IE    + +L
Sbjct: 19  FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIED-GAYQSL 75

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITS-SHGLSNVTDTLKELYVSKN 151
           + L  LIL  N +  +  +  F  LS           + S  +       TLKEL V+ N
Sbjct: 76  SHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 152 EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKI 211
            +   +  E+F                    NLTNL+ L L  N+I+             
Sbjct: 135 LIQSFKLPEYF-------------------SNLTNLEHLDLSSNKIQ------------- 162

Query: 212 SLQSN---RLTSMKGFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLVDD 267
           S+       L  M      +    L LS N ++ ++ G    + L  L + +N+L  V D
Sbjct: 163 SIYCTDLRVLHQMP-----LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 217

Query: 268 --IQNLSRLEDLWLNDN 282
                L+ L+ +WL+ N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 23/186 (12%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
            VLDL+  ++  ++   +   ++L+ L LT N + SL     S LS+L+KL   +  +  
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-- 112

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITSSH-----G 135
           A++E       L  L+EL +  N +        F  L+     D+S N+I S +      
Sbjct: 113 ASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEH--FHD--LQILEFGSNRLRVMEN--LQNLTNLQE 189
           L  +      L +S N    M  I+   F +  L+ L   +N+L+ + +     LT+LQ+
Sbjct: 172 LHQMPLLNLSLDLSLN---PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228

Query: 190 LWLGRN 195
           +WL  N
Sbjct: 229 IWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 208 IKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLT 263
            K + L  N L  +    F     L+ L LS   I  +E     +L +L  L ++ N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 264 LVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSD 321
            +       LS L+ L   +  + SLE+      G  +TL  + + +N     I      
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHN----LIQSFKLP 142

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.0 bits (228), Expect = 1e-20
 Identities = 45/248 (18%), Positives = 101/248 (40%), Gaps = 26/248 (10%)

Query: 50  ELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKL 108
             +   N ++       S     +K +L     ++A          +    EL L    L
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL 71

Query: 109 MKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI-EHFHDLQI 167
             +PD ++  +++V +++ N + S   L  +  +L+ L    N   ++  + E    L+ 
Sbjct: 72  SSLPD-NLPPQITVLEITQNALIS---LPELPASLEYLDACDN---RLSTLPELPASLKH 124

Query: 168 LEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKGFE 225
           L+  +N+L ++  L     L+ +    N++ ++      L+    +S+++N+LT +   E
Sbjct: 125 LDVDNNQLTMLPEL--PALLEYINADNNQLTMLPELPTSLE---VLSVRNNQLTFL--PE 177

Query: 226 ECIALEELYLSHNGISKM-EGLSTLVNL----HVLDVSSNKLT-LVDDIQNLSRLEDLWL 279
              +LE L +S N +  +        +            N++T + ++I +L     + L
Sbjct: 178 LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237

Query: 280 NDNQIESL 287
            DN + S 
Sbjct: 238 EDNPLSSR 245

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.9 bits (189), Expect = 1e-15
 Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 31/204 (15%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           + L L    L  L     P  +T L++T N L SL       ++L+ L    N +     
Sbjct: 62  SELQLNRLNLSSLPD-NLPPQITVLEITQNALISLPELP---ASLEYLDACDNRLS---- 113

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
              +  +  A L+ L + +N+L  +P+  +   L   +   N++T    L  +  +L+ L
Sbjct: 114 ---TLPELPASLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTM---LPELPTSLEVL 165

Query: 147 YVSKN---EVPKMEEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQE----LWLGRNRIK 198
            V  N    +P     E    L+ L+  +N L  +        + +E         NRI 
Sbjct: 166 SVRNNQLTFLP-----ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 199 VV--NLCGLKCIKKISLQSNRLTS 220
            +  N+  L     I L+ N L+S
Sbjct: 221 HIPENILSLDPTCTIILEDNPLSS 244

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 14/179 (7%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKK----LSLRQNLID 82
            VL + + QL  L   E P +L  LD++ N L SL +      + ++       R+N I 
Sbjct: 163 EVLSVRNNQLTFLP--ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDT 142
                 +S    L     +IL DN L      S+ ++ +  D     I  S         
Sbjct: 221 HIPENILS----LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

Query: 143 LKELYVSKN----EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
            + L  +      E  + +  + +H  +  E  +     ++ L +  + +     R ++
Sbjct: 277 HRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQV 335

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.9 bits (223), Expect = 6e-20
 Identities = 61/313 (19%), Positives = 113/313 (36%), Gaps = 29/313 (9%)

Query: 24  LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTAN-----RLTSLDSRISHLSNLKKLSLRQ 78
           L       + F +    SV    +L   ++  N     RL +  S ++    L  ++L+ 
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIF-------KKLSVFDVSFNEIT 131
                     + ++     +E L + +  + +  D   F       K L +  V      
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318

Query: 132 -SSHGLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSNRLRVME--NLQNLTN 186
            S   L +V   +    +S ++ P   M           L F  N            L  
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 187 LQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSMKGFEEC---IALEELYLSHN 238
           LQ L L RN +K           +  ++ + +  N L S      C    ++  L LS N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

Query: 239 GISKMEGLSTLVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGS 297
            ++          + VLD+ +N++  +  D+ +L  L++L +  NQ   L+S+ + V   
Sbjct: 439 MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ---LKSVPDGVFDR 495

Query: 298 RETLTTIYLENNP 310
             +L  I+L +NP
Sbjct: 496 LTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.6 bits (178), Expect = 3e-14
 Identities = 50/334 (14%), Positives = 102/334 (30%), Gaps = 48/334 (14%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
             L L+   + +L   +    + L  L L+ NR+ SLD  +     +L+ L +  N + +
Sbjct: 55  KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSH--GLSN 138
                IS    +A L  L L  N    +P    F    KL+   +S  +        +++
Sbjct: 115 -----IS-CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 139 VTDTLKELYVSKNEVPKMEE---IEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
           +  +   L +    +   E          +  L F  N L  ++   ++  L  L L   
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 196 RIKVVNLCGLKC---------------IKKISLQSNRLTSMKGFEECIALEELYLSHNGI 240
           ++   N   L                 ++ I         +  F     +E L + +  I
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 241 SKMEGLS-------TLVNLHVLDVSSNKLTLVDDI--QNLSRLEDLWLNDNQIESLESIV 291
           ++             L +L +  V +       +      + +    L+ +    +  + 
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 292 EAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQ 325
                S  + T +    N              S 
Sbjct: 349 P---PSPSSFTFLNFTQN----VFTDSVFQGCST 375

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.5 bits (170), Expect = 3e-13
 Identities = 55/342 (16%), Positives = 106/342 (30%), Gaps = 42/342 (12%)

Query: 27  TVLDLTSFQLHDL-DSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD 83
             LDL+      L    EF   T LT L L+A +   LD       +L  + L       
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSH--------- 134
              E  S       +  L+   N L  +        L    +S  ++   +         
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 135 ----GLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN------- 183
               G + +  TL+ +  +     K+ +      ++ L   +  +    + +        
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 184 LTNLQELWLGRNRIK-----VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN 238
           L +L    +           + ++     IK +S+       M       +   L  + N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 239 GISKME--GLSTLVNLHVLDVSSNKLTLVDDI-QNLSRLEDLWLNDNQIESLESIV-EAV 294
             +     G STL  L  L +  N L     +      +  L   D  + SL S   +  
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 295 AGSRETLTTIYLENN----------PQNLQIILLPSDKFSQI 326
               E++  + L +N          P  ++++ L +++   I
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSI 465

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.7 bits (160), Expect = 5e-12
 Identities = 56/312 (17%), Positives = 100/312 (32%), Gaps = 52/312 (16%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           L  V  + P     L L+ N ++ L    IS LS L+ L L  N I   ++     +   
Sbjct: 43  LTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSL-DFHVFLFN 99

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155
             LE L +  N+L  I        L   D+SFN+                       +P 
Sbjct: 100 QDLEYLDVSHNRLQNISC-CPMASLRHLDLSFNDFDV--------------------LPV 138

Query: 156 MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN-------RIKVVNLCGLKCI 208
            +E  +   L  L   + + R   +L  + +L    +  +         +  +L      
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197

Query: 209 K-KISLQSNRLTSMKGFEECIALEELYLS------------HNGISKMEGLSTLVNLHVL 255
              +    N L S++      AL  L LS               +S++    TL+N+ + 
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 256 DVSSNKLTLVDDIQNL--SRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL 313
            + +     V   Q      +E L + +  I       E        L ++ +E+     
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET-ALKSLMIEHVKNQ- 315

Query: 314 QIILLPSDKFSQ 325
             +      +S 
Sbjct: 316 VFLFSKEALYSV 327

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 34/209 (16%), Positives = 83/209 (39%), Gaps = 13/209 (6%)

Query: 137 SNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWL 192
            ++    K L +S+N + ++    I    +L++L    NR+R ++        +L+ L +
Sbjct: 48  KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107

Query: 193 GRNRIKVVNLCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKMEGLSTL 249
             NR++ ++ C +  ++ + L  N    +   K F     L  L LS     +++ L  +
Sbjct: 108 SHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-LLPV 166

Query: 250 VNLHVLDVSSNKLTL-----VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTI 304
            +LH+  +  + ++        +   +     L L  +        V     +   L   
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 305 YLENNPQNLQIILLPSDKFSQIYSRLILM 333
            ++ N +N Q ++    + ++  + L + 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVT 255

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 17  DQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSL 76
           D+      S  VL+L+S  L        P  +  LDL  NR+ S+   ++HL  L++L++
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNV 480

Query: 77  RQNLIDDAAIEPISRWDALAGLEELILRDN 106
             N +      P   +D L  L+ + L DN
Sbjct: 481 ASNQLKSV---PDGVFDRLTSLQYIWLHDN 507

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.2 bits (221), Expect = 1e-19
 Identities = 62/311 (19%), Positives = 122/311 (39%), Gaps = 30/311 (9%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLID 82
              + +LD++   + +L+       L +     +   S+ +++     L  L+L      
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKC--SYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPDVSIF-------KKLSVFDVSFNEITSS-- 133
             +   I +      +    + + KL    D   F       K LS+  V  +       
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 134 ---HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR--VMENLQNLTNLQ 188
                 SN+   +K   VS   +  M           L+F +N L   V EN  +LT L+
Sbjct: 294 YIYEIFSNMN--IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 189 ELWLGRNRIKVVNLC-----GLKCIKKISLQSNRLTSMKGFEEC---IALEELYLSHNGI 240
            L L  N++K ++        +K ++++ +  N ++  +   +C    +L  L +S N +
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 241 SKMEGLSTLVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299
           +          + VLD+ SNK+  +   +  L  L++L +  NQ   L+S+ + +     
Sbjct: 412 TDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ---LKSVPDGIFDRLT 468

Query: 300 TLTTIYLENNP 310
           +L  I+L  NP
Sbjct: 469 SLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.1 bits (195), Expect = 2e-16
 Identities = 52/307 (16%), Positives = 110/307 (35%), Gaps = 15/307 (4%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83
           S  ++D +   L  +   +     T L+++ N ++ L +  I  LS L+ L +  N I  
Sbjct: 1   SEFLVDRSKNGLIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-- 57

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS---SHGLSNVT 140
             ++  S +     LE L L  NKL+KI        L   D+SFN   +        N++
Sbjct: 58  QYLDI-SVFKFNQELEYLDLSHNKLVKISCHP-TVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 141 DTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK 198
             LK L +S   + K  +  I H +  ++L          E+ + L +     L      
Sbjct: 116 Q-LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 199 VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVS 258
                 +  +   ++ +  L+++K   E             +     LS L  L+ ++ +
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL-TLNNIETT 233

Query: 259 SNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILL 318
            N    +  +   + +    +++ +++           S  +L  + +     +      
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQ-LDFRDFDYSGTSLKALSIHQV-VSDVFGFP 291

Query: 319 PSDKFSQ 325
            S  +  
Sbjct: 292 QSYIYEI 298

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.2 bits (177), Expect = 4e-14
 Identities = 41/312 (13%), Positives = 89/312 (28%), Gaps = 26/312 (8%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDA 84
            +L ++  ++  LD   F     L  LDL+ N+L  +        NLK L L  N  D  
Sbjct: 48  RILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDA- 104

Query: 85  AIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLK 144
            +     +  ++ L+ L L    L K   V     L++  V    +  ++G     + L+
Sbjct: 105 -LPICKEFGNMSQLKFLGLSTTHLEKS-SVLPIAHLNISKVLLV-LGETYGEKEDPEGLQ 161

Query: 145 ELYVSKNEV--PKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNL 202
           +       +  P  +E     D+ +    +  L  ++ +              +++    
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 203 CGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS-------TLVNLHVL 255
                +  I    N    +        +    +S+  +              +L  L + 
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 256 DVSSNKLTLVDDI--QNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL 313
            V S+          +  S +       +    +                +   NN    
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM---LCPSKISPFLHLDFSNN---- 334

Query: 314 QIILLPSDKFSQ 325
            +     +    
Sbjct: 335 LLTDTVFENCGH 346

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 13/222 (5%)

Query: 137 SNVTDTLKELYVSKNEVPKMEEIEHFHD---LQILEFGSNRLRVMEN--LQNLTNLQELW 191
            +++     L +S+N + ++           L+IL    NR++ ++    +    L+ L 
Sbjct: 17  KDLSQKTTILNISQNYISELWT-SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75

Query: 192 LGRNRIKVVNLCGLKCIKKISLQSNRLTSMKG---FEECIALEELYLSHNGISK--MEGL 246
           L  N++  ++      +K + L  N   ++     F     L+ L LS   + K  +  +
Sbjct: 76  LSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 247 STLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE--SLESIVEAVAGSRETLTTI 304
           + L    VL V        +D + L       L+           I++    +   L   
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 305 YLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSF 346
            ++   ++ +     S       +  +      +      SF
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 87.6 bits (217), Expect = 1e-19
 Identities = 53/258 (20%), Positives = 90/258 (34%), Gaps = 33/258 (12%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
           SN V      ++ ++ S + P N  EL     +L  +     S   +L+K+ + QN + +
Sbjct: 10  SNRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 84  AAIEPISRWDALAGLEEL----ILRDNKLMKIPDVSIFK---KLSVFDVSFNEITS-SHG 135
             IE     D  + L +L    I + N L+ I     F+    L    +S   I      
Sbjct: 69  -VIEA----DVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDV 122

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEH--FHDL----QILEFGSNRLR-VMENLQNLTNLQ 188
               +     L +  N    +  IE   F  L     IL    N ++ +  +  N T L 
Sbjct: 123 HKIHSLQKVLLDIQDN--INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180

Query: 189 EL-WLGRNRIKVVN---LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK 242
           EL     N ++ +      G      + +   R+ S+   G E    L      +    K
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL--KK 238

Query: 243 MEGLSTLVNLHVLDVSSN 260
           +  L  LV L    ++  
Sbjct: 239 LPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.8 bits (176), Expect = 3e-14
 Identities = 40/210 (19%), Positives = 83/210 (39%), Gaps = 21/210 (10%)

Query: 99  EELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPKM 156
              + +++K+ +IP   + +          ++        S   D L+++ +S+N+V ++
Sbjct: 12  RVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEV 69

Query: 157 EEIEHFHDLQILEF----GSNRLRVMEN--LQNLTNLQELWLGRNRIKVV---NLCGLKC 207
            E + F +L  L       +N L  +     QNL NLQ L +    IK +   +      
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 208 IKKISLQSN-RLTSMKG--FEECIA-LEELYLSHNGISKMEG--LSTLVNLHVLDVSSNK 261
              + +Q N  + +++   F         L+L+ NGI ++     +      +    +N 
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189

Query: 262 LTLVDD--IQNLSRLEDLWLNDNQIESLES 289
           L  + +      S    L ++  +I SL S
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 25/165 (15%)

Query: 46  TNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL----EE 100
            NL  L ++   +  L D    H      L ++ N+     I  I R ++  GL      
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI----NIHTIER-NSFVGLSFESVI 158

Query: 101 LILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSKNE 152
           L L  N + +I + S F   +   +     N +         G S        L +S+  
Sbjct: 159 LWLNKNGIQEIHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASG----PVILDISRTR 213

Query: 153 VPKMEEIEHFHDLQILEF-GSNRLRVMENLQNLTNLQELWLGRNR 196
           +  +       +L+ L    +  L+ +  L+ L  L E  L    
Sbjct: 214 IHSLPS-YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 21/135 (15%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 208 IKKISLQSNRLTS--MKGFEECIALEELYLSHNGISKMEGLST---LVNLHVLDVS-SNK 261
             ++     +L       F     LE++ +S N + ++        L  LH + +  +N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 262 LTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLP 319
           L  ++    QNL  L+ L +++  I+ L                + +++N     I  + 
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPD---VHKIHSLQKVLLDIQDNI---NIHTIE 145

Query: 320 SDKFSQIYSRLILMY 334
            + F  +    ++++
Sbjct: 146 RNSFVGLSFESVILW 160

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 86.8 bits (215), Expect = 2e-19
 Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 18/163 (11%)

Query: 164 DLQILEFGSNRLRVMEN---LQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNR 217
              +L+   N L  +        LTNL  L L  N +  ++      +  ++ + L SN 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 218 LTSMKG--FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV-----DDI 268
           L ++    F +  ALE L L +N I  ++      +  L  L +S N+++        D 
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 269 QNLSRLEDLWLNDNQIESLESIVEAVAG-SRETLTTIYLENNP 310
             L +L  L L+ N+++ L      +          +YL NNP
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPL--TDLQKLPAWVKNGLYLHNNP 200

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.3 bits (180), Expect = 1e-14
 Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 56/207 (27%)

Query: 44  FPTNLTELDLTANRLTSLDSRI--SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101
            P+    LDL+ N L+ L +    + L+NL  L L  N +    I   + +  +  L  L
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEA-FVPVPNLRYL 93

Query: 102 ILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEH 161
            L  N L  + +        +F            L      L+ L +  N          
Sbjct: 94  DLSSNHLHTLDE-------FLFS----------DLQA----LEVLLLYNNH--------- 123

Query: 162 FHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV------NLCGLKCIKKISLQS 215
              + +++  +         +++  LQ+L+L +N+I         +   L  +  + L S
Sbjct: 124 ---IVVVDRNA--------FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172

Query: 216 NRLTSM--KGFEECIAL--EELYLSHN 238
           N+L  +     ++  A     LYL +N
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.3 bits (167), Expect = 4e-13
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 14/124 (11%)

Query: 208 IKKISLQSNRLTSMKG---FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKL 262
              + L  N L+ ++          L  L LSHN ++ +       + NL  LD+SSN L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 263 TLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPS 320
             +D+    +L  LE L L +N I  ++    A     + L  +YL  N    QI   P 
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDR--NAFEDMAQ-LQKLYLSQN----QISRFPV 153

Query: 321 DKFS 324
           +   
Sbjct: 154 ELIK 157

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
            + N   LDL+S  LH LD   F     L  L L  N +  +D      ++ L+KL L Q
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
           N I    +E I   + L  L  L L  NKL K+P  +  +KL 
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 250 VNLHVLDVSSNKLTLVD---DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYL 306
               +LD+S N L+ +        L+ L  L L+ N +  + S  EA       L  + L
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--EAFVPVPN-LRYLDL 95

Query: 307 ENNPQNLQIILLPSDKFS 324
            +N     +  L    FS
Sbjct: 96  SSN----HLHTLDEFLFS 109

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.4 bits (209), Expect = 8e-19
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 14/179 (7%)

Query: 142 TLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKV 199
               L++S+N +       +  +  L  L      L  ++    L  L  L L  N+++ 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 200 V--NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG--LSTLVNLH 253
           +      L  +  + +  NRLTS+          L+ELYL  N +  +    L+    L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 254 VLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
            L +++N LT +    +  L  L+ L L +N + +    +         L   +L  NP
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT----IPKGFFGSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 41/192 (21%), Positives = 61/192 (31%), Gaps = 46/192 (23%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T L+L   +L  L        L  LDL+ N+L SL      L  L  L +  N +   ++
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL--TSL 115

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
                   L  L+EL L+ N+L  +P         +                    L++L
Sbjct: 116 PL-GALRGLGELQELYLKGNELKTLPP-------GLLT----------PTPK----LEKL 153

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCG 204
            ++ N             L  L  G         L  L NL  L L  N +  +     G
Sbjct: 154 SLANNN------------LTELPAGL--------LNGLENLDTLLLQENSLYTIPKGFFG 193

Query: 205 LKCIKKISLQSN 216
              +    L  N
Sbjct: 194 SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 230 LEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL 287
              L+LS N +       L     L  L++   +LT +     L  L  L L+ NQ++SL
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 288 ESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQ 325
             + + +      LT + +  N    ++  LP      
Sbjct: 93  PLLGQTLP----ALTVLDVSFN----RLTSLPLGALRG 122

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 82.6 bits (204), Expect = 5e-18
 Identities = 52/288 (18%), Positives = 96/288 (33%), Gaps = 32/288 (11%)

Query: 32  TSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQ-----NLIDDAAI 86
           ++F       VE       L+    R+ +          +K LSL++       I    +
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL 85

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIF----KKLSVFDVSFNEITS-----SHGLS 137
               R   ++GL+EL L + ++       +       L++ ++      +     +    
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145

Query: 138 NVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVMENLQN------LTNLQE 189
            +   LK L +++        E++  F  L  L+   N       L +         LQ 
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 190 LWLGRNRIKVVN------LCGLKCIKKISLQSNRLTSMKGFEECI---ALEELYLSHNGI 240
           L L    ++  +            ++ + L  N L    G   C     L  L LS  G+
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 241 SKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLE 288
            ++        L VLD+S N+L        L ++ +L L  N     E
Sbjct: 266 KQVPK-GLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.5 bits (157), Expect = 6e-12
 Identities = 46/237 (19%), Positives = 75/237 (31%), Gaps = 18/237 (7%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI--D 82
           +  +     F    +  +     LT  +L            +   +L  L+LR       
Sbjct: 77  AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVT 140
           DA +  + +W    GL+ L +     +      V +F  LS  D+S N      GL +  
Sbjct: 137 DAWLAELQQW-LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 141 -----DTLKELYVSKNEVPKMEEI-----EHFHDLQILEFGSNRLRVM---ENLQNLTNL 187
                 TL+ L +    +     +          LQ L+   N LR      +    + L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME 244
             L L    +K V       +  + L  NRL      +E   +  L L  N     E
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDSE 312

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 82.8 bits (205), Expect = 6e-18
 Identities = 55/325 (16%), Positives = 106/325 (32%), Gaps = 80/325 (24%)

Query: 48  LTELDLTANRLTSLDSR-----ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG---LE 99
           +    L  + +T+ D +     +    ++K++ L  N I   A   +S  + +A    LE
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS--ENIASKKDLE 63

Query: 100 ELILRDNKLMKIPDVSI------------FKKLSVFDVSFNEITS------SHGLSNVTD 141
                D    ++ D                 KL    +S N             LS  T 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT- 122

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL-------RVMENLQNLTNLQELWLGR 194
            L+ LY+  N               +      ++        V +  +N   L+ +  GR
Sbjct: 123 PLEHLYLHNN--------------GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168

Query: 195 NRIKVV-------NLCGLKCIKKISLQSNRLTS-------MKGFEECIALEELYLSHNGI 240
           NR++              + +  + +  N +         ++G   C  L+ L L  N  
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 241 SKM------EGLSTLVNLHVLDVSSNKLT------LVDDIQNLS--RLEDLWLNDNQI-- 284
           + +        L +  NL  L ++   L+      +VD    L    L+ L L  N+I  
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

Query: 285 ESLESIVEAVAGSRETLTTIYLENN 309
           +++ ++   +      L  + L  N
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 6e-12
 Identities = 46/291 (15%), Positives = 89/291 (30%), Gaps = 65/291 (22%)

Query: 46  TNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100
             L  + L+ N         L   +S  + L+ L L  N +   A   I+R      L+E
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-----ALQE 148

Query: 101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITS------SHGLSNVTDTLKELYVSKN--- 151
           L +                L       N + +      +    +    L  + + +N   
Sbjct: 149 LAVNKKAKNA-------PPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIR 200

Query: 152 ----EVPKMEEIEHFHDLQILEFGSNRLRVM------ENLQNLTNLQELWLGRNRIKVVN 201
               E   +E + +  +L++L+   N    +        L++  NL+EL L    +    
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR- 259

Query: 202 LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNK 261
             G   +   +                 L+ L L +N I   + + TL  +         
Sbjct: 260 --GAAAVVD-AFSKLENIG---------LQTLRLQYNEIEL-DAVRTLKTVID------- 299

Query: 262 LTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQN 312
                  + +  L  L LN N+    + +V+ +     T     L+     
Sbjct: 300 -------EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 26/147 (17%)

Query: 167 ILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGF-E 225
           +++  +  +       N    +EL                      L+  ++  ++    
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDREL---------------------DLRGYKIPVIENLGA 39

Query: 226 ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDI--QNLSRLEDLWLNDNQ 283
                + +  S N I K++G   L  L  L V++N++  + +   Q L  L +L L +N 
Sbjct: 40  TLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99

Query: 284 IESLESIVEAVAGSRETLTTIYLENNP 310
           +  L  +      S ++LT + +  NP
Sbjct: 100 LVELGDL--DPLASLKSLTYLCILRNP 124

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 27/162 (16%)

Query: 103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF 162
           L    + +    +   +    D+   +I     L    D    +  S NE+ K++     
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63

Query: 163 HDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVN-LCGLKCIKKISLQSNRLT 219
             L+ L   +NR+  +     Q L +L EL L  N +  +  L  L  +K          
Sbjct: 64  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS--------- 114

Query: 220 SMKGFEECIALEELYLSHNGISKMEG-----LSTLVNLHVLD 256
                     L  L +  N ++  +      +  +  + VLD
Sbjct: 115 ----------LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 23/164 (14%)

Query: 28  VLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIE 87
           ++ LT+  +             ELDL   ++  +++  + L     +    N      I 
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-----IR 55

Query: 88  PISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTD--TL 143
            +  +  L  L+ L++ +N++ +I +        L+   ++ N +     L  +    +L
Sbjct: 56  KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
             L + +N V      +H+           RL V+  +  +  L
Sbjct: 116 TYLCILRNPV---TNKKHY-----------RLYVIYKVPQVRVL 145

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 64/220 (29%), Positives = 88/220 (40%), Gaps = 52/220 (23%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
             LDL S +L  L S  F   T L  L L  N+L +L + I   L NL+ L +  N +  
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-- 97

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
            A+ PI  +D L  L EL L  N+L  +P         VFD           L+     L
Sbjct: 98  QAL-PIGVFDQLVNLAELRLDRNQLKSLPP-------RVFD----------SLTK----L 135

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLC 203
             L +  NE            LQ L  G            LT+L+EL L  N++K V   
Sbjct: 136 TYLSLGYNE------------LQSLPKGV--------FDKLTSLKELRLYNNQLKRVPEG 175

Query: 204 ---GLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHN 238
               L  +K + L +N+L  +    F+    L+ L L  N
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.2 bits (188), Expect = 5e-16
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 20/196 (10%)

Query: 132 SSHGL----SNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQN 183
           SS  L    SN+    K+L +  N++  +          L++L    N+L+ +     + 
Sbjct: 24  SSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83

Query: 184 LTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHN 238
           L NL+ LW+  N+++ +       L  + ++ L  N+L S+    F+    L  L L +N
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143

Query: 239 GISKM-EGL-STLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAV 294
            +  + +G+   L +L  L + +N+L  V +     L+ L+ L L++NQ   L+ + E  
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ---LKRVPEGA 200

Query: 295 AGSRETLTTIYLENNP 310
             S E L  + L+ NP
Sbjct: 201 FDSLEKLKMLQLQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.8 bits (187), Expect = 6e-16
 Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 18/176 (10%)

Query: 164 DLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVV--NLC-GLKCIKKISLQSNRL 218
           D + L+  SN+L  + +     LT L+ L+L  N+++ +   +   LK ++ + +  N+L
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 219 TSM--KGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLS 272
            ++    F++ + L EL L  N +  +      +L  L  L +  N+L  +       L+
Sbjct: 98  QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157

Query: 273 RLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYS 328
            L++L L +NQ++ +    E        L T+ L+NN    Q+  +P   F  +  
Sbjct: 158 SLKELRLYNNQLKRVP---EGAFDKLTELKTLKLDNN----QLKRVPEGAFDSLEK 206

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.3 bits (191), Expect = 8e-16
 Identities = 59/350 (16%), Positives = 113/350 (32%), Gaps = 71/350 (20%)

Query: 27  TVLDLTSFQLHDLDSVEFP---TNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQ 78
             LD+   +L D    E          + L    LT      + S +     L +L+LR 
Sbjct: 6   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 65

Query: 79  NLIDDAAIEPISRWDALA----GLEELILRDNKLMKIPDVSIF------KKLSVFDVSFN 128
           N + D  +  +     L      +++L L++  L       +         L    +S N
Sbjct: 66  NELGDVGVHCVL--QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 129 EITSS------HGLSNVTDTLKELYVSKNEVPKM------EEIEHFHDLQILEFGSNRL- 175
            +  +       GL +    L++L +    +           +    D + L   +N + 
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 176 -RVMENL-----QNLTNLQELWLGRNRIKVVN-------LCGLKCIKKISLQSNRLTSMK 222
              +  L      +   L+ L L    +   N       +     +++++L SN+L    
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD-V 242

Query: 223 GFEE--------CIALEELYLSHNGISK------MEGLSTLVNLHVLDVSSNKLT----- 263
           G  E           L  L++   GI+          L    +L  L ++ N+L      
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 264 -LVDDIQN-LSRLEDLWLNDNQI--ESLESIVEAVAGSRETLTTIYLENN 309
            L + +     +LE LW+                +A +R  L  + + NN
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-FLLELQISNN 351

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.8 bits (182), Expect = 9e-15
 Identities = 57/298 (19%), Positives = 106/298 (35%), Gaps = 68/298 (22%)

Query: 46  TNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG---LEE 100
            ++  LD+    L+       +  L   + + L    + +A  + IS   AL     L E
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS--ALRVNPALAE 60

Query: 101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIE 160
           L LR N+L               DV  + +    GL   +  +++L +            
Sbjct: 61  LNLRSNELG--------------DVGVHCV--LQGLQTPSCKIQKLSLQNC--------- 95

Query: 161 HFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK---VVNLC-GLKC----IKKIS 212
                 +   G   L     L+ L  LQEL L  N +    +  LC GL      ++K+ 
Sbjct: 96  -----CLTGAGCGVLSST--LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 213 LQSNRLTSM------KGFEECIALEELYLSHNGISK------MEGL-STLVNLHVLDVSS 259
           L+   L++                +EL +S+N I++       +GL  +   L  L + S
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208

Query: 260 NKLT------LVDDIQNLSRLEDLWLNDNQI--ESLESIVEAVAGSRETLTTIYLENN 309
             +T      L   + + + L +L L  N++    +  +   +      L T+++   
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 61/311 (19%), Positives = 104/311 (33%), Gaps = 72/311 (23%)

Query: 46  TNLTELDLTANRLTSLDSRISHLS--------NLKKLSLRQNLIDDAAIEPISRWDALAG 97
            +  EL ++ N +   ++ +  L          L+ L L    +       +     +A 
Sbjct: 170 PDFKELTVSNNDIN--EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG--IVAS 225

Query: 98  ---LEELILRDNKLMKIPDVSIF-------KKLSVFDVSFNEITS------SHGLSNVTD 141
              L EL L  NKL  +    +         +L    +    IT+         L     
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE- 284

Query: 142 TLKELYVSKNEVPKMEEIEHFHD--------LQILEFGSNRLRVM------ENLQNLTNL 187
           +LKEL ++ NE+   E      +        L+ L   S              L     L
Sbjct: 285 SLKELSLAGNEL-GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM---- 243
            EL +  NR++     G++ + +   Q               L  L+L+   +S      
Sbjct: 344 LELQISNNRLEDA---GVRELCQGLGQPGS-----------VLRVLWLADCDVSDSSCSS 389

Query: 244 --EGLSTLVNLHVLDVSSNKLT------LVDDI-QNLSRLEDLWLNDNQI-ESLESIVEA 293
               L    +L  LD+S+N L       LV+ + Q    LE L L D    E +E  ++A
Sbjct: 390 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 449

Query: 294 VAGSRETLTTI 304
           +   + +L  I
Sbjct: 450 LEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 36/158 (22%)

Query: 27  TVLDLTSFQLHD------LDSVEFP-TNLTELDLTANRLTS-----LDSRISHLSNLKKL 74
             L L   +L D       +++  P   L  L + +   T+       S ++    L +L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346

Query: 75  SLRQNLIDDAAIEPISRWDALA----GLEELILRDNKLMKIPDVSIF---------KKLS 121
            +  N ++DA +  +     L      L  L L D     + D S             L 
Sbjct: 347 QISNNRLEDAGVRELC--QGLGQPGSVLRVLWLADC---DVSDSSCSSLAATLLANHSLR 401

Query: 122 VFDVSFNEITSS------HGLSNVTDTLKELYVSKNEV 153
             D+S N +  +        +      L++L +     
Sbjct: 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 73.1 bits (180), Expect = 5e-15
 Identities = 62/274 (22%), Positives = 101/274 (36%), Gaps = 83/274 (30%)

Query: 45  PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
                + +L    +T   ++   L+++ ++    + I   +++ I     L  +  L L 
Sbjct: 18  FAETIKANLKKKSVTDAVTQN-ELNSIDQIIANNSDI--KSVQGI---QYLPNVRYLALG 71

Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
            NKL           +S              L+N    L  L ++ N+            
Sbjct: 72  GNKL---------HDISALK----------ELTN----LTYLILTGNQ------------ 96

Query: 165 LQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKG- 223
           LQ L  G            LTNL+EL                      L  N+L S+   
Sbjct: 97  LQSLPNGV--------FDKLTNLKELV---------------------LVENQLQSLPDG 127

Query: 224 -FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTL----VDDIQNLSRLED 276
            F++   L  L L+HN +  +       L NL  LD+S N+L      V D   L++L+D
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD--KLTQLKD 185

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           L L  NQ   L+S+ + V     +L  I+L +NP
Sbjct: 186 LRLYQNQ---LKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 185 TNLQELWLGRNRI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM 243
               +  L +  +   V    L  I +I   ++ + S++G +    +  L L  N +  +
Sbjct: 19  AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI 78

Query: 244 EGLSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETL 301
             L  L NL  L ++ N+L  + +     L+ L++L L +NQ++SL      V      L
Sbjct: 79  SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD---GVFDKLTNL 135

Query: 302 TTIYLENNPQNLQIILLPSDKF 323
           T + L +N    Q+  LP   F
Sbjct: 136 TYLNLAHN----QLQSLPKGVF 153

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 22/140 (15%)

Query: 173 NRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEE 232
            R+ +    +  ++++EL L        +       K   L           +E   LE 
Sbjct: 5   RRIHLELRNRTPSDVKELVL--------DNSRSNEGKLEGL----------TDEFEELEF 46

Query: 233 LYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDI--QNLSRLEDLWLNDNQIESLESI 290
           L   + G++ +  L  L  L  L++S N+++   ++  +    L  L L+ N+I+ L +I
Sbjct: 47  LSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI 106

Query: 291 VEAVAGSRETLTTIYLENNP 310
                   E L ++ L N  
Sbjct: 107 --EPLKKLENLKSLDLFNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 14/130 (10%)

Query: 141 DTLKELYVSKNEVPKMEEIE---HFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
             +KEL +  +   + +       F +L+ L   +  L  + NL  L  L++L L  NR+
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV 76

Query: 198 KVVNLC---GLKCIKKISLQSNRLTSMKGFE---ECIALEELYLSHNGISKMEG-----L 246
                        +  ++L  N++  +   E   +   L+ L L +  ++ +        
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF 136

Query: 247 STLVNLHVLD 256
             L  L  LD
Sbjct: 137 KLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 164 DLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK 222
           +L +    SN  ++         L+ L      +  + NL  L  +KK+ L  NR++   
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGL 80

Query: 223 G--FEECIALEELYLSHNGISKMEG---LSTLVNLHVLDVSSNKLTLVDD 267
               E+C  L  L LS N I  +     L  L NL  LD+ + ++T ++D
Sbjct: 81  EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 14/133 (10%)

Query: 67  HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVS 126
             S++K+L L  +  ++  +E ++  D    LE L   +  L  I ++    KL   ++S
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLT--DEFEELEFLSTINVGLTSIANLPKLNKLKKLELS 72

Query: 127 FNEITS-SHGLSNVTDTLKELYVSKNEVPKMEEIEH---FHDLQILEFGSN--------R 174
            N ++     L+     L  L +S N++  +  IE      +L+ L+  +         R
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132

Query: 175 LRVMENLQNLTNL 187
             V + L  LT L
Sbjct: 133 ENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 28  VLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRIS-HLSNLKKLSLRQNLIDDAAI 86
            L   +  L  + ++     L +L+L+ NR++     ++    NL  L+L  N I D  +
Sbjct: 46  FLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--L 103

Query: 87  EPISRWDALAGLEELILRDNKLMKIPD-----VSIFKKLSVFD 124
             I     L  L+ L L + ++  + D       +  +L+  D
Sbjct: 104 STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.0 bits (175), Expect = 4e-14
 Identities = 65/265 (24%), Positives = 103/265 (38%), Gaps = 29/265 (10%)

Query: 40  DSVEFPTNLTELDLTANRLT---SLDSRISHLSNLKKLSLR-QNLIDDAAIEPISRWDAL 95
           D+      +  LDL+   L     + S +++L  L  L +   N +       I++   L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK---L 100

Query: 96  AGLEELILRDNKLM-KIPD-VSIFKKLSVFDVSFNEITSS--HGLSNVTDTLKELYVSKN 151
             L  L +    +   IPD +S  K L   D S+N ++ +    +S++   L  +    N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGITFDGN 159

Query: 152 ----EVPKMEEIEHFHDL-QILEFGSNRL--RVMENLQNLTNLQELWLGRNRIK---VVN 201
                +P       F  L   +    NRL  ++     NL NL  + L RN ++    V 
Sbjct: 160 RISGAIPD--SYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL 216

Query: 202 LCGLKCIKKISLQSNRLT-SMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVS 258
               K  +KI L  N L   +        L  L L +N I     +GL+ L  LH L+VS
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 259 SNKLT-LVDDIQNLSRLEDLWLNDN 282
            N L   +    NL R +     +N
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.3 bits (142), Expect = 8e-10
 Identities = 40/217 (18%), Positives = 76/217 (35%), Gaps = 42/217 (19%)

Query: 98  LEELILRDNKL---MKIPD-VSIFKKLSVFDVS-FNEITSS--HGLSNVTDTLKELYVSK 150
           +  L L    L     IP  ++    L+   +   N +       ++ +T  L  LY++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITH 110

Query: 151 N----EVPKMEEIEHFHDLQILEFGSNRL--RVMENLQNLTNLQELWLGRNRI------K 198
                 +P  + +     L  L+F  N L   +  ++ +L NL  +    NRI       
Sbjct: 111 TNVSGAIP--DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 199 VVNLCGLKCIKKISLQSNRLT--------SMKGFEECIALEELYLSHNGISKM--EGLST 248
             +   L     +++  NRLT        ++        L  + LS N +         +
Sbjct: 169 YGSFSKL--FTSMTISRNRLTGKIPPTFANLN-------LAFVDLSRNMLEGDASVLFGS 219

Query: 249 LVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQI 284
             N   + ++ N L   +  +     L  L L +N+I
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 42/253 (16%), Positives = 82/253 (32%), Gaps = 45/253 (17%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
                 +T   +  + S   P +   L L    L ++ S   S+L N+ ++ +  ++   
Sbjct: 12  QEEDFRVTCKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV--- 66

Query: 84  AAIEPISRW--DALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
             ++ +       L+ +  + +R+ + +   D    K+L                     
Sbjct: 67  -TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-------------------- 105

Query: 142 TLKELYVSKN---EVPKMEEIEHFHDLQILEFGSN-RLRVMEN--LQNLTN-LQELWLGR 194
            LK L +        P + ++       ILE   N  +  +     Q L N    L L  
Sbjct: 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 195 NRIKVVN---LCGLKCIKKISLQSNR-LTSMKG--FEECI-ALEELYLSHNGISKMEGLS 247
           N    V      G K +  + L  N+ LT +    F         L +S   ++ +    
Sbjct: 166 NGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-K 223

Query: 248 TLVNLHVLDVSSN 260
            L +L  L   + 
Sbjct: 224 GLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 19/157 (12%), Positives = 56/157 (35%), Gaps = 30/157 (19%)

Query: 184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNG-ISK 242
             + Q L L    ++ +                       F     +  +Y+S +  + +
Sbjct: 30  PPSTQTLKLIETHLRTI-------------------PSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 243 MEG--LSTLVNLHVLDVSSNK-LTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGS 297
           +E      L  +  +++ + + LT +D   ++ L  L+ L + +  ++    +      S
Sbjct: 71  LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDL--TKVYS 128

Query: 298 RETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMY 334
            +    + + +NP    +  +P + F  + +  + + 
Sbjct: 129 TDIFFILEITDNPY---MTSIPVNAFQGLCNETLTLK 162

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 65.1 bits (159), Expect = 6e-13
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 4/112 (3%)

Query: 201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN 260
               ++ +   + +SN         E + LE L L + G+  +  L  L  L  L++S N
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN 81

Query: 261 KLTLVDDI--QNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           ++    D+  + L  L  L L+ N+++ + ++        E L ++ L N  
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL--EPLKKLECLKSLDLFNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 14/129 (10%)

Query: 142 TLKELYV--SKNEVPKMEEI-EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK 198
            ++EL +   K+   K+E +   F +L+ L   +  L  + NL  L  L++L L  NRI 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIF 84

Query: 199 VVN---LCGLKCIKKISLQSNRLTSMKGFE---ECIALEELYLSHNGISKMEG-----LS 247
                    L  +  ++L  N+L  +   E   +   L+ L L +  ++ +         
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144

Query: 248 TLVNLHVLD 256
            L  L  LD
Sbjct: 145 LLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 7e-08
 Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 16/154 (10%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
           +  + +D+       L +R    + +++L L     +D  IE ++       LE L L +
Sbjct: 3   SGSSGMDMKRRIHLELRNR--TPAAVRELVLDNCKSNDGKIEGLT--AEFVNLEFLSLIN 58

Query: 106 NKLMKIPDVSIFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNEVPKMEEIEH--- 161
             L+ + ++    KL   ++S N I      L+     L  L +S N++  +  +E    
Sbjct: 59  VGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKK 118

Query: 162 FHDLQILEFGSN--------RLRVMENLQNLTNL 187
              L+ L+  +         R  V + L  LT L
Sbjct: 119 LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 26/148 (17%)

Query: 1   MDMDGEKQPSAEATNPDQAVEIDLSN------------------TVLDLTSFQLHDLDSV 42
           MDM            P    E+ L N                    L L +  L  + ++
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNL 67

Query: 43  EFPTNLTELDLTANRLTSLDSRIS-HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101
                L +L+L+ NR+      ++  L NL  L+L  N + D  I  +     L  L+ L
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSL 125

Query: 102 ILRDNKLMKIPD-----VSIFKKLSVFD 124
            L + ++  + D       +  +L+  D
Sbjct: 126 DLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.2 bits (162), Expect = 7e-13
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 12/135 (8%)

Query: 185 TNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNG 239
             + E+ L +N IKV+        K +++I L +N+++ +    F+   +L  L L  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 240 ISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVA 295
           I+++       L +L +L +++NK+  +     Q+L  L  L L DN+   L++I +   
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK---LQTIAKGTF 148

Query: 296 GSRETLTTIYLENNP 310
                + T++L  NP
Sbjct: 149 SPLRAIQTMHLAQNP 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 37/167 (22%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           L  +    P  +TE+ L  N +  +     S    L+++ L  N I  + + P   +  L
Sbjct: 23  LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI--SELAP-DAFQGL 79

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155
             L  L+L  NK+ ++P        S+F+          GL +    L+ L ++ N   K
Sbjct: 80  RSLNSLVLYGNKITELPK-------SLFE----------GLFS----LQLLLLNAN---K 115

Query: 156 MEEIEH--FHD---LQILEFGSNRLRVMEN--LQNLTNLQELWLGRN 195
           +  +    F D   L +L    N+L+ +       L  +Q + L +N
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 45/170 (26%)

Query: 132 SSHGLSNV-----TDTLKELYVSKNEVPKMEEIEH--FHD---LQILEFGSNRLRVMEN- 180
              GL+ +          E+ + +N    ++ I    F     L+ ++  +N++  +   
Sbjct: 19  RGKGLTEIPTNLPETI-TEIRLEQN---TIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74

Query: 181 -LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSN---RLTSMKGFEECIALEELYLS 236
             Q L +L  L L  N+I               L  +    L S         L+ L L+
Sbjct: 75  AFQGLRSLNSLVLYGNKIT-------------ELPKSLFEGLFS---------LQLLLLN 112

Query: 237 HNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDN 282
            N I+ +       L NL++L +  NKL  +       L  ++ + L  N
Sbjct: 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
             +DL++ Q+ +L    F    +L  L L  N++T L   +   L +L+ L L  N I  
Sbjct: 59  RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI-- 116

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
             +  +  +  L  L  L L DNKL  I     F  L 
Sbjct: 117 NCL-RVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLR 152

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 67.8 bits (166), Expect = 7e-13
 Identities = 50/321 (15%), Positives = 101/321 (31%), Gaps = 74/321 (23%)

Query: 45  PTNLTELDLTANRLTSLDSR------ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG- 97
           P  +T LDL+ N L S+ +        +  +++  L+L  N +     + +     LA  
Sbjct: 21  PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV--QILAAI 78

Query: 98  ---LEELILRDNKL-----MKIPDV--SIFKKLSVFDVSFNEITS------SHGLSNVTD 141
              +  L L  N L      ++     +I   ++V D+ +N+ +S          SN+  
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL-TNLQELWLGRNRIKVV 200
           ++  L +  N               +    S+ L  ++ L  +  N+  L L  N +   
Sbjct: 139 SITSLNLRGN--------------DLGIKSSDEL--IQILAAIPANVNSLNLRGNNLASK 182

Query: 201 NLCGL--------KCIKKISLQSNRLTS--MKGFEECIA-----LEELYLSHNGISK--- 242
           N   L          +  + L +N L            +     +  L L  N +     
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 243 ---MEGLSTLVNLHVLDVSSNKLT---------LVDDIQNLSRLEDLWLNDNQI--ESLE 288
                   +L +L  + +  + +          L     N+ ++  +  N  +I      
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302

Query: 289 SIVEAVAGSRETLTTIYLENN 309
            I   +           L N 
Sbjct: 303 PISNLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 45/334 (13%), Positives = 103/334 (30%), Gaps = 78/334 (23%)

Query: 27  TVLDLTSFQLHDLDSVEF-------PTNLTELDLTANRLTSLDSR------ISHLSNLKK 73
           T LDL+   L+ + +VE        P ++T L+L+ N L   +S        +  +N+  
Sbjct: 25  TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84

Query: 74  LSLRQNLIDDAAIEPISRWDALAG----LEELILRDNKL-----MKIPDV--SIFKKLSV 122
           L+L  N +   + + +     LA     +  L L  N        +      ++   ++ 
Sbjct: 85  LNLSGNFLSYKSSDELV--KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 123 FDVSFNEITS------SHGLSNVTDTLKELYVSKNEVPK------MEEIEHFHD-LQILE 169
            ++  N++           L+ +   +  L +  N +         + +      +  L+
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD 202

Query: 170 FGSNRLRV--MENL-----QNLTNLQELWLGRNRIKVVNLCGL-------KCIKKISLQS 215
             +N L +     L         ++  L L  N +   +L  L       K ++ + L  
Sbjct: 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262

Query: 216 NRLTSM---------KGFEECIALEELYLSHNGISKMEGLSTLV--------NLHVLDVS 258
           + + +M           F     +  +  +   I        +            V  + 
Sbjct: 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP-SHSIPISNLIRELSGKADVPSLL 321

Query: 259 SNKLTLV-------DDIQNLSRLEDLWLNDNQIE 285
           +  L          +D+     L +       + 
Sbjct: 322 NQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 33/161 (20%)

Query: 181 LQNLTNLQELWLGRNRIK---VVNLC-GLKC----IKKISLQSNRLTS--MKGFEECIA- 229
                 +  L L  N +     V L          +  ++L  N L         + +A 
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 230 ----LEELYLSHNGISKMEGLSTLVN--------LHVLDVSSNKLT------LVDDIQNL 271
               +  L LS N +S  +    LV         + VLD+  N  +            NL
Sbjct: 78  IPANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 272 -SRLEDLWLNDNQI--ESLESIVEAVAGSRETLTTIYLENN 309
            + +  L L  N +  +S + +++ +A     + ++ L  N
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 42/195 (21%)

Query: 132 SSHGLSNV-----TDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQ 182
               L +V      DT ++L +    +  + +        L  L    N+L+ +      
Sbjct: 22  QGKSLDSVPSGIPADT-EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80

Query: 183 NLTNLQELWLGRNRIKVVNLCGLKCIKKISLQS---NRLTSMKGFEECIALEELYLSHNG 239
           +LT L  L L  N++              SL     + LT          L++LYL  N 
Sbjct: 81  DLTELGTLGLANNQLA-------------SLPLGVFDHLT---------QLDKLYLGGNQ 118

Query: 240 ISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVA 295
           +  +       L  L  L +++N+L  +       L+ L+ L L+ NQ   L+S+     
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ---LQSVPHGAF 175

Query: 296 GSRETLTTIYLENNP 310
                L TI L  N 
Sbjct: 176 DRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 55/201 (27%), Positives = 81/201 (40%), Gaps = 50/201 (24%)

Query: 22  IDLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
           I      LDL S  L  L    F   T LT L+L  N+L +L + +   L+ L  L L  
Sbjct: 33  IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
           N +  A++     +D L  L++L L  N+L  +P         VFD           L+ 
Sbjct: 93  NQL--ASLPL-GVFDHLTQLDKLYLGGNQLKSLPS-------GVFD----------RLTK 132

Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK 198
               LKEL ++ N+            LQ +  G+           LTNLQ L L  N+++
Sbjct: 133 ----LKELRLNTNQ------------LQSIPAGA--------FDKLTNLQTLSLSTNQLQ 168

Query: 199 VV---NLCGLKCIKKISLQSN 216
            V       L  ++ I+L  N
Sbjct: 169 SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIES 286
           E+L L   G++ +       L  L  L++  N+L  +      +L+ L  L L +NQ+ S
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 287 LESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKF 323
           L      V      L  +YL  N    Q+  LPS  F
Sbjct: 98  LPL---GVFDHLTQLDKLYLGGN----QLKSLPSGVF 127

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 38/169 (22%)

Query: 38  DLDSV--EFPTNLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWD 93
            L+ +    P    EL L  N  T L++      L  L+K++   N I    IE    ++
Sbjct: 22  KLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--DIEE-GAFE 78

Query: 94  ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEV 153
             +G+ E++L  N+L  +          +F           GL +    LK L +  N  
Sbjct: 79  GASGVNEILLTSNRLENVQH-------KMFK----------GLES----LKTLMLRSN-- 115

Query: 154 PKMEEIEH--FHDL---QILEFGSNRLRVMEN--LQNLTNLQELWLGRN 195
            ++  + +  F  L   ++L    N++  +       L +L  L L  N
Sbjct: 116 -RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 28/130 (21%)

Query: 209 KKISLQSNRLTSMK---GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLT 263
            ++ L +N  T ++    F++   L ++  S+N I+ +E         ++ + ++SN+L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 264 LV--DDIQNLSRLEDLWLNDNQIESLE---------------------SIVEAVAGSRET 300
            V     + L  L+ L L  N+I  +                      ++      +  +
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 301 LTTIYLENNP 310
           L+T+ L  NP
Sbjct: 155 LSTLNLLANP 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 16  PDQAVEIDLSN-TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNL 71
               +   L     ++ ++ ++ D++   F   + + E+ LT+NRL ++  ++   L +L
Sbjct: 48  EATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107

Query: 72  KKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
           K L LR N I    +     +  L+ +  L L DN++  +     F  L 
Sbjct: 108 KTLMLRSNRI--TCV-GNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLH 153

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 185 TNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNG 239
           TN Q L+L  N+I  +       L  +K++ L SN+L ++    F+    L  L L  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 240 ISKME-GL-STLVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAG 296
           ++ +   +   LV+L  L +  NKLT L   I+ L+ L  L L+ NQ   L+SI      
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ---LKSIPHGAFD 156

Query: 297 SRETLTTIYLENNP 310
              +LT  YL  NP
Sbjct: 157 RLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 22  IDLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
           I  +  +L L   Q+  L+   F    NL EL L +N+L +L   +   L+ L  L L  
Sbjct: 38  IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITS 132
           N +      P + +D L  L+EL +  NKL ++P  +     L+   +  N++ S
Sbjct: 98  NQLTVL---PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 16  PDQAVEIDLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKK 73
            D   ++    TVLDL + QL  L S  F    +L EL +  N+LT L   I  L++L  
Sbjct: 84  FDSLTQL----TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139

Query: 74  LSLRQNLIDDAAIEPISRWDALAGLEELILRDN 106
           L+L QN +      P   +D L+ L    L  N
Sbjct: 140 LALDQNQLKSI---PHGAFDRLSSLTHAYLFGN 169

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 16/137 (11%)

Query: 185 TNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNG 239
                L L  N +K +       L  + ++ L  N+L S+    F +  +L  L LS N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 240 ISKMEG--LSTLVNLHVLDVSSNKLTL----VDDIQNLSRLEDLWLNDNQIESLESIVEA 293
           +  +       L  L  L +++N+L      V D   L++L+DL L  NQ   L+S+ + 
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD--KLTQLKDLRLYQNQ---LKSVPDG 142

Query: 294 VAGSRETLTTIYLENNP 310
           V     +L  I+L +NP
Sbjct: 143 VFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.8 bits (122), Expect = 9e-08
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 7/98 (7%)

Query: 27  TVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
           T L L   +L  L +  F   T+LT L+L+ N+L SL + +   L+ LK+L+L  N +  
Sbjct: 55  TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL-- 112

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
            ++ P   +D L  L++L L  N+L  +PD  +F +L+
Sbjct: 113 QSL-PDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLT 148

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 7/102 (6%)

Query: 22  IDLSNTVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
           I    T LDL +  L  L +  F   T+LT+L L  N+L SL + + + L++L  L+L  
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKL 120
           N +   ++     +D L  L+EL L  N+L  +PD  +F KL
Sbjct: 86  NQL--QSLPN-GVFDKLTQLKELALNTNQLQSLPD-GVFDKL 123

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 209 KKISLQSNRLTSMKG-FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLT-- 263
            ++ L  N+ T +         L  + LS+N IS +     S +  L  L +S N+L   
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 264 --LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
                D   L  L  L L+ N    +  + E        L+ + +  NP
Sbjct: 94  PPRTFD--GLKSLRLLSLHGND---ISVVPEGAFNDLSALSHLAIGANP 137

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 44/151 (29%)

Query: 45  PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
           P ++TEL L  N+ T +   +S+  +L  + L  N I  + +   S +  +  L  LIL 
Sbjct: 30  PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI--STLSNQS-FSNMTQLLTLILS 86

Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
            N+L  IP          FD          GL +    L+ L +  N            D
Sbjct: 87  YNRLRCIPP-------RTFD----------GLKS----LRLLSLHGN------------D 113

Query: 165 LQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
           + ++  G+          +L+ L  L +G N
Sbjct: 114 ISVVPEGA--------FNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 18/122 (14%)

Query: 132 SSHGLSNV-----TDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVMEN--LQN 183
           S+ GL  +      D   ELY+  N+   + +E+ ++  L +++  +NR+  + N    N
Sbjct: 18  SNKGLKVLPKGIPRDV-TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76

Query: 184 LTNLQELWLGRNRIK-----VVNLCGLKCIKKISLQSNRLTSM-KG-FEECIALEELYLS 236
           +T L  L L  NR++       +  GLK ++ +SL  N ++ + +G F +  AL  L + 
Sbjct: 77  MTQLLTLILSYNRLRCIPPRTFD--GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134

Query: 237 HN 238
            N
Sbjct: 135 AN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 209 KKISLQSNRLTSMKG---FEECIALEELYLSHNGISKME-GL-STLVNLHVLDVSSNKLT 263
            ++ L  N L  +     F     L +L L  N ++ +E        ++  L +  NK+ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 264 LVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
            + +     L +L+ L L DNQ   +  ++        +LT++ L +NP
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQ---ISCVMPGSFEHLNSLTSLNLASNP 137

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 50/155 (32%)

Query: 45  PTNLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102
           P + TEL L  N L  + S      L +L KL L++N +    IEP + ++  + ++EL 
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL--TGIEP-NAFEGASHIQELQ 84

Query: 103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF 162
           L +NK+ +I +        +F           GL                          
Sbjct: 85  LGENKIKEISN-------KMFL----------GLHQ------------------------ 103

Query: 163 HDLQILEFGSNRLR-VMEN-LQNLTNLQELWLGRN 195
             L+ L    N++  VM    ++L +L  L L  N
Sbjct: 104 --LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 28/128 (21%)

Query: 132 SSHGLSNV-----TDTLKELYVSKNEVPKMEEIEHFHD---LQILEFGSNRLRVMEN--L 181
           +  GL  +       T  EL ++ NE+ ++     F     L  LE   N+L  +E    
Sbjct: 16  TGRGLKEIPRDIPLHT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74

Query: 182 QNLTNLQELWLGRNRI---------KVVNLCGLKCIKKISLQSNRLTS-MKG-FEECIAL 230
           +  +++QEL LG N+I          +  L      K ++L  N+++  M G FE   +L
Sbjct: 75  EGASHIQELQLGENKIKEISNKMFLGLHQL------KTLNLYDNQISCVMPGSFEHLNSL 128

Query: 231 EELYLSHN 238
             L L+ N
Sbjct: 129 TSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 16  PDQAVEIDLSN-TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNL 71
               +   L +   L+L   QL  ++   F   +++ EL L  N++  + +++   L  L
Sbjct: 45  SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL 104

Query: 72  KKLSLRQN 79
           K L+L  N
Sbjct: 105 KTLNLYDN 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 9/108 (8%)

Query: 209 KKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM-EGL-STLVNLHVLDVSSNKLTL 264
            ++ L+SN+L S+    F++   L +L LS N I  + +G+   L  L +L +  NKL  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 265 VDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           + +     L++L++L L+ NQ   L+S+ + +     +L  I+L  NP
Sbjct: 91  LPNGVFDKLTQLKELALDTNQ---LKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)

Query: 22  IDLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
           I  S T L+L S +L  L    F   T LT+L L+ N++ SL   +   L+ L  L L +
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
           N +   ++ P   +D L  L+EL L  N+L  +PD  IF +L+
Sbjct: 86  NKL--QSL-PNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLT 124

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 213 LQSNRLTSMKGFEECIALEELYLSHNGISKM---EGLSTLVNLHVLDVSSNKLTLVDD-- 267
            +   L S+        L ELY+ +    +      L  L  L  L +  + L  V    
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 268 IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL 313
                RL  L L+ N +ESL    + V G   +L  + L  NP + 
Sbjct: 76  FHFTPRLSRLNLSFNALESLSW--KTVQGL--SLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 7e-08
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 21/113 (18%)

Query: 173 NRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEE 232
             L  + +L    NL EL++   +           ++ + L+               L  
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQH----------LQHLELRD--------LRGLGELRN 60

Query: 233 LYLSHNGISKMEG--LSTLVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDN 282
           L +  +G+  +          L  L++S N L  L         L++L L+ N
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 36  LHDLDSVEFPTNLTELDLTANR-LTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWD 93
           L  L  +    NLTEL +   + L  L+ R +  L  L+ L++ ++ +    + P    D
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAP----D 74

Query: 94  ALAG---LEELILRDNKLMKIPDVSIFKKLS 121
           A      L  L L  N L  +      + LS
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSW-KTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 8e-06
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 238 NGISKMEGLSTLVNLHVLDVSSNK-LTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAV 294
             +  +  L    NL  L + + + L  +   D++ L  L +L +  + +  +    +A 
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP--DAF 76

Query: 295 AGSRETLTTIYLENNPQNLQIILLPSDKFS 324
             +   L+ + L  N     +  L      
Sbjct: 77  HFTPR-LSRLNLSFN----ALESLSWKTVQ 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 43/149 (28%)

Query: 126 SFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLT 185
           + + +    G  N    L ELY+   +      ++H                  +L+ L 
Sbjct: 20  ALDSLHHLPGAEN----LTELYIENQQ-----HLQHLEL--------------RDLRGLG 56

Query: 186 NLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM-E 244
            L+ L + ++ ++ V                   +   F     L  L LS N +  +  
Sbjct: 57  ELRNLTIVKSGLRFV-------------------APDAFHFTPRLSRLNLSFNALESLSW 97

Query: 245 GLSTLVNLHVLDVSSNKLTLVDDIQNLSR 273
                ++L  L +S N L     ++ L R
Sbjct: 98  KTVQGLSLQELVLSGNPLHCSCALRWLQR 126

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 12/113 (10%)

Query: 45  PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG---LEEL 101
           P   + L  T +        +    NL +L +         ++ +     L G   L  L
Sbjct: 7   PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQ----QHLQHL-ELRDLRGLGELRNL 61

Query: 102 ILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKN 151
            +  + L  +     F    +LS  ++SFN + S    +    +L+EL +S N
Sbjct: 62  TIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 7e-08
 Identities = 57/337 (16%), Positives = 110/337 (32%), Gaps = 68/337 (20%)

Query: 27  TVLD-LTSFQLHDLDSVEFPTNLTE---LDLTANRLTSLDSRISHLSN-LKKLS-LRQNL 80
            V D L++     +        LT      L       LD R   L   +   +  R ++
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSI 332

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSI-----------FKKLSVFDVSFNE 129
           I ++  + ++ WD         +  +KL  I + S+           F +LSVF  S + 
Sbjct: 333 IAESIRDGLATWDNW-----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH- 386

Query: 130 ITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV------MENLQN 183
           I         T  L  ++    +   M  +   H   ++E       +      +E    
Sbjct: 387 IP--------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNR----------LTSMKGFEECIALEEL 233
           L N     L R+ +   N+        +                L +++  E       +
Sbjct: 439 LENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 234 YLSHNGI-SKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED-LWLNDNQIESL-ESI 290
           +L    +  K+   ST  N           ++++ +Q L   +  +  ND + E L  +I
Sbjct: 497 FLDFRFLEQKIRHDSTAWN--------ASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 291 VEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIY 327
           ++ +    E L           L+I L+  D+   I+
Sbjct: 549 LDFLPKIEENL---ICSKYTDLLRIALMAEDEA--IF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 47/339 (13%), Positives = 96/339 (28%), Gaps = 103/339 (30%)

Query: 37  HDLDSVEFPTNLTELDLTANRLTSL-------DSRISHLSNLKKLSLRQNLIDDAAIEPI 89
           H +D         E       + S+       +     + ++ K  L +  ID   +   
Sbjct: 5   HHMD-----FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK- 58

Query: 90  SRWDALAGLEEL--ILRDNKLMKIPDVSIFKKL--SVFDVSFNEITSS-HGLSNVTDTLK 144
              DA++G   L   L   +        + +K    V  +++  + S           + 
Sbjct: 59  ---DAVSGTLRLFWTLLSKQ------EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCG 204
            +Y+ + +     + + F    +     +RL+    L+    L EL   R    V+ + G
Sbjct: 110 RMYIEQRD-RLYNDNQVFAKYNV-----SRLQPYLKLRQ--ALLEL---RPAKNVL-IDG 157

Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264
                           + G                     G + +     LDV  +    
Sbjct: 158 ----------------VLGS--------------------GKTWVA----LDVCLS---- 173

Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFS 324
              +Q     +  WLN     S E+++E +    + L      N             +  
Sbjct: 174 -YKVQCKMDFKIFWLNLKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 325 QIYSRLILMYFFRSHS----VL----------GFSF-CQ 348
            I + L  +   + +     VL           F+  C+
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 11/86 (12%)

Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTL----VDDIQNLSRLEDLWLNDNQI 284
           + LYL  N I+K+E      L  L  LD+ +N+LT+    V D   L++L  L LNDNQ 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD--KLTQLTQLSLNDNQ- 89

Query: 285 ESLESIVEAVAGSRETLTTIYLENNP 310
             L+SI      + ++LT I+L NNP
Sbjct: 90  --LKSIPRGAFDNLKSLTHIWLLNNP 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           L SV    PT    L L  N++T L+  +   L+ L +L L  N +    + P   +D L
Sbjct: 21  LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL--TVL-PAGVFDKL 77

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLS 121
             L +L L DN+L  IP    F  L 
Sbjct: 78  TQLTQLSLNDNQLKSIPR-GAFDNLK 102

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 27 TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQN 79
           VL L   Q+  L+   F   T LT LDL  N+LT L + +   L+ L +LSL  N
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.7 bits (122), Expect = 8e-08
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 11/86 (12%)

Query: 231 EELYLSHNGISKME-GL-STLVNLHVLDVSSNKLTL----VDDIQNLSRLEDLWLNDNQI 284
           + L+L++N I+K+E G+   LVNL  L  +SNKLT     V D   L++L  L LNDN  
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD--KLTQLTQLDLNDNH- 92

Query: 285 ESLESIVEAVAGSRETLTTIYLENNP 310
             L+SI      + ++LT IYL NNP
Sbjct: 93  --LKSIPRGAFDNLKSLTHIYLYNNP 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           L SV    PT+   L L  N++T L+  +  HL NL++L    N +   AI P   +D L
Sbjct: 24  LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL--TAI-PTGVFDKL 80

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLS 121
             L +L L DN L  IP    F  L 
Sbjct: 81  TQLTQLDLNDNHLKSIPR-GAFDNLK 105

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 27 TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQN 79
            L L + Q+  L+   F    NL +L   +N+LT++ + +   L+ L +L L  N
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 13/111 (11%)

Query: 186 NLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEE-CIALEELYLSHNGISKME 244
           +L+ L    + +       L      + +S    +++  EE    L  L LS+N + +++
Sbjct: 133 DLKGLRSDPDLVAQNIDVVL------NRRSCMAATLRIIEENIPELLSLNLSNNRLYRLD 186

Query: 245 GLSTLV----NLHVLDVSSNKLTLVDDIQNLS--RLEDLWLNDNQIESLES 289
            +S++V    NL +L++S N+L    ++  +   +LE+LWL+ N +     
Sbjct: 187 DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFR 237

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 38/302 (12%), Positives = 83/302 (27%), Gaps = 93/302 (30%)

Query: 46  TNLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
             L E++L + +L     R  +      +KL L+ N +   A + +            +L
Sbjct: 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD----------LL 150

Query: 104 RDNKLMKIPDVSIFKKLSVFDVSFNEITS------SHGLSNVTDTLKELYVSKNEVPKME 157
             ++           +++   +S N +T+        GL+  T ++  L +         
Sbjct: 151 LHDQ----------CQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHT------ 193

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKIS--LQS 215
                    + + G   L     L     LQEL +  N        G      ++   + 
Sbjct: 194 --------GLGDEGLELL--AAQLDRNRQLQELNVAYNGA------GDTAALALARAARE 237

Query: 216 NRLTSMKGFEECIALEELYLSHNGISK---------MEGLSTLVNLHVLDVSSNKLT--- 263
           +            +LE L+L  N +S                   + V       ++   
Sbjct: 238 HP-----------SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW 286

Query: 264 --------------LVDDIQNLSRLEDLWLNDNQI--ESLESIVEAVAGSRETLTTIYLE 307
                             +Q    L    L D++    +     + +      +  +  +
Sbjct: 287 SVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEG-EVRALLEQ 345

Query: 308 NN 309
             
Sbjct: 346 LG 347

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 48/327 (14%), Positives = 98/327 (29%), Gaps = 59/327 (18%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQ-NLI 81
           +     L+          ++ FP  L  L L+      +       + ++KL L    L 
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIF------KKLSVFDVSF--NEITSS 133
            +     I +      LE L  R+     I D  +       K+L    +    +E    
Sbjct: 307 TEDHCTLIQK---CPNLEVLETRNV----IGDRGLEVLAQYCKQLKRLRIERGADEQGME 359

Query: 134 HGLSNVTD-TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL------RVMENLQNLTN 186
                V+   L  L             +   +L+ +    + +       +   L+NL +
Sbjct: 360 DEEGLVSQRGLIAL------------AQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 187 LQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSM-----------KGFEE----CIALE 231
            + + L R   ++ +L     ++ + +   +L               G          + 
Sbjct: 408 FRLVLLDREE-RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466

Query: 232 ELYLSHNGISKMEGLSTLV----NLHVLDVSSNKLT---LVDDIQNLSRLEDLWLNDNQI 284
            + L + G S  EGL        NL  L++     +   +   +  L  L  LW+   + 
Sbjct: 467 WMLLGYVGES-DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

Query: 285 ESLESIVEAVAGSRETLTTIYLENNPQ 311
                 +  +A     +  I     P+
Sbjct: 526 SMTGQDLMQMARPYWNIELIPSRRVPE 552

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 21/247 (8%)

Query: 47  NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN 106
           NL   +        +    ++L  LK +  R+ ++ D  ++ +++      LE L L   
Sbjct: 90  NLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAK-ARADDLETLKLDKC 148

Query: 107 KLMKIPDVSIF------KKLSVFDVSFNEIT--SSHGLSNVTDTLKELYVSKNEVPKMEE 158
                    +       +K+    +  +  +      L  +      L V    + +  +
Sbjct: 149 S--GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK 206

Query: 159 IEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRL 218
           I    DL+ +      L  +  + +   L+ +   +    +   CG       +      
Sbjct: 207 I-SPKDLETIARNCRSLVSV-KVGDFEILELVGFFKAAANLEEFCGGSL----NEDIGMP 260

Query: 219 TSMKGFEECIALEELYLSHNGISKMEGLSTLV-NLHVLDVSSNKLT---LVDDIQNLSRL 274
                      L  L LS+ G ++M  L      +  LD+    L        IQ    L
Sbjct: 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320

Query: 275 EDLWLND 281
           E L   +
Sbjct: 321 EVLETRN 327

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 44 FPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLID-DAAIEPISRW 92
          FP + TEL LT N LT+L   +   L  L+   L  N    D  + P+  W
Sbjct: 29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAW 79

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 6/62 (9%)

Query: 230 LEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL 287
             EL L+ N ++ +    L  L  L    + +N       +  L      WL      + 
Sbjct: 33  TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRA----WLAGRPERAP 88

Query: 288 ES 289
             
Sbjct: 89  YR 90

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 43/256 (16%), Positives = 91/256 (35%), Gaps = 34/256 (13%)

Query: 47  NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN 106
           NL            +++  S  + L+++ L++ ++ D  +E I++  +    + L+L  +
Sbjct: 83  NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK--SFKNFKVLVL--S 138

Query: 107 KLMKIPDVSI------FKKLSVFDVSFNEIT--SSHGLSNVTD---TLKELYVSKNEVPK 155
                    +       + L   D+  +++   S H LS+  D   +L  L +S      
Sbjct: 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS-----C 193

Query: 156 MEEIEHFHDLQILEFGSNRLRV--MENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISL 213
           +     F  L+ L      L+   +     L  L  L     +++ +   G     +  +
Sbjct: 194 LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253

Query: 214 QSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLV----NLHVLDVSSNKLT---LVD 266
            S    ++ G       E   LS    +    L  +      L  L++S   +    LV 
Sbjct: 254 YSGLSVALSGC-----KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK 308

Query: 267 DIQNLSRLEDLWLNDN 282
            +    +L+ LW+ D 
Sbjct: 309 LLCQCPKLQRLWVLDY 324

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 26/127 (20%)

Query: 180 NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNG 239
           +L NL  L  L++G           +   + +    +R  +         L+ L +    
Sbjct: 217 DLPNLEKL-VLYVGVEDY--GFDGDMNVFRPL-FSKDRFPN---------LKWLGIVDAE 263

Query: 240 IS-----KMEGLSTLVNLHVLDVSSNKLT------LVDDIQNLSRLEDLWLNDNQI--ES 286
                         L  L  +D+S+  LT      L+D +  +  L+ + +  N +  E 
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323

Query: 287 LESIVEA 293
            + + ++
Sbjct: 324 KKELQKS 330

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.98
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.98
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.26
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.22
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.04
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.02
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.77
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.55
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.12
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.98
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.36
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.99

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=8.6e-35  Score=260.46  Aligned_cols=305  Identities=25%  Similarity=0.339  Sum_probs=269.0

Q ss_pred             cccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662           21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (352)
Q Consensus        21 ~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  100 (352)
                      ...+++++|+++++.+..++.+..+++|++|++++|.++.++. +.++++|++|++++|.++..     +.+..+++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI-----SALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCSE
T ss_pred             hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCc-----hHHcCCCcCCE
Confidence            3557899999999999999988889999999999999999887 89999999999999998873     35788999999


Q ss_pred             EEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCccc
Q 018662          101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN  180 (352)
Q Consensus       101 L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  180 (352)
                      |++++|.+..++.+..+++|++|++++|......+....+++|++|++++|.+.....+..+++|+++++++|.+...+.
T Consensus       115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  194 (347)
T 4fmz_A          115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP  194 (347)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG
T ss_pred             EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc
Confidence            99999999998888899999999999996655444466689999999999999887778999999999999999987777


Q ss_pred             ccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCC
Q 018662          181 LQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSS  259 (352)
Q Consensus       181 ~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  259 (352)
                      +..+++|+.+++++|.+... .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+.+++.+..+++|++|++++
T Consensus       195 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  274 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS  274 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccC
Confidence            89999999999999998877 57889999999999999999877889999999999999999998899999999999999


Q ss_pred             CcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccC
Q 018662          260 NKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSH  339 (352)
Q Consensus       260 n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (352)
                      |++++++.+..+++|+.|++++|.++..+   ...+..+++|++|++++|++.+..   |   +.          .+.++
T Consensus       275 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~~~---~---~~----------~l~~L  335 (347)
T 4fmz_A          275 NQISDISVLNNLSQLNSLFLNNNQLGNED---MEVIGGLTNLTTLFLSQNHITDIR---P---LA----------SLSKM  335 (347)
T ss_dssp             SCCCCCGGGGGCTTCSEEECCSSCCCGGG---HHHHHTCTTCSEEECCSSSCCCCG---G---GG----------GCTTC
T ss_pred             CccCCChhhcCCCCCCEEECcCCcCCCcC---hhHhhccccCCEEEccCCcccccc---C---hh----------hhhcc
Confidence            99999988899999999999999998654   345667899999999999765543   1   22          26789


Q ss_pred             ceeceeeeecc
Q 018662          340 SVLGFSFCQDY  350 (352)
Q Consensus       340 ~~~~~~~~~~~  350 (352)
                      +.+++++|+..
T Consensus       336 ~~L~l~~N~i~  346 (347)
T 4fmz_A          336 DSADFANQVIK  346 (347)
T ss_dssp             SEESSSCC---
T ss_pred             ceeehhhhccc
Confidence            99999998763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=7.4e-33  Score=247.87  Aligned_cols=281  Identities=22%  Similarity=0.323  Sum_probs=250.7

Q ss_pred             ccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662           20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (352)
Q Consensus        20 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~   99 (352)
                      +..+++|++|+++++.+++++.+..+++|++|++++|.++.++ .+.++++|++|++++|.+...     +.+..+++|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~-----~~~~~l~~L~  135 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDI-----SPLANLTKMY  135 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCC-----GGGTTCTTCC
T ss_pred             hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCc-----hhhccCCcee
Confidence            5667899999999999999988788899999999999999886 589999999999999998874     2377899999


Q ss_pred             EEEccCC-CCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc
Q 018662          100 ELILRDN-KLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM  178 (352)
Q Consensus       100 ~L~l~~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  178 (352)
                      +|++++| .+..++.+..+++|++|++++|.+..... ...+++|++|++++|.+.....+..+++|+.+++.+|.+...
T Consensus       136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCC
Confidence            9999999 55566668899999999999999887765 456889999999999999877789999999999999999877


Q ss_pred             ccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEc
Q 018662          179 ENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDV  257 (352)
Q Consensus       179 ~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l  257 (352)
                      ..+..+++|+.|++++|.+... .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+.+++.+..+++|++|++
T Consensus       215 ~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          215 TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL  294 (347)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence            7789999999999999998887 588899999999999999998888899999999999999999988899999999999


Q ss_pred             CCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcc
Q 018662          258 SSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQN  312 (352)
Q Consensus       258 ~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~  312 (352)
                      ++|++++.  ..+..+++|++|++++|+++.+++     ...+++|++|++++|++.
T Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESSSCC---
T ss_pred             cCCcCCCcChhHhhccccCCEEEccCCccccccC-----hhhhhccceeehhhhccc
Confidence            99999876  567889999999999999998764     567899999999999753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2e-32  Score=254.66  Aligned_cols=281  Identities=23%  Similarity=0.360  Sum_probs=150.6

Q ss_pred             cccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662           21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (352)
Q Consensus        21 ~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  100 (352)
                      ..+++|++|+++++.+++++++..+++|++|++++|.+..++. +.++++|++|++++|.++...     .+..+++|++
T Consensus        65 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~~  138 (466)
T 1o6v_A           65 EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID-----PLKNLTNLNR  138 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCSE
T ss_pred             hhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCCh-----HHcCCCCCCE
Confidence            4456666666666666666555555666666666666665555 666666666666666665531     2445566666


Q ss_pred             EEccCCCCCCCCCCcc---------------------ccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccc
Q 018662          101 LILRDNKLMKIPDVSI---------------------FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI  159 (352)
Q Consensus       101 L~l~~~~l~~l~~~~~---------------------~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  159 (352)
                      |++++|.+..++.+..                     +++|++|++++|.+..... ...+++|++|++++|.+.....+
T Consensus       139 L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~  217 (466)
T 1o6v_A          139 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPL  217 (466)
T ss_dssp             EEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGG
T ss_pred             EECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccc
Confidence            6666655554433222                     3334444444444333221 22234444444444444443334


Q ss_pred             cCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCC
Q 018662          160 EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN  238 (352)
Q Consensus       160 ~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n  238 (352)
                      +.+++|++|++++|.+..++.+..+++|+.|++++|.+... .+..+++|+.|++++|.+...+.+..+++|+.|++++|
T Consensus       218 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN  297 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC
Confidence            44445555555555444444445555555555555554444 34455555555555555555544555555555555555


Q ss_pred             CCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccc
Q 018662          239 GISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL  313 (352)
Q Consensus       239 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  313 (352)
                      .+.+++.+..+++|+.|++++|++++...+..+++|++|++++|.+++++     .+..+++|+.|++++|++.+
T Consensus       298 ~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          298 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-----SLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             CCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCSSCCCB
T ss_pred             cccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch-----hhccCCCCCEEeCCCCccCc
Confidence            55555545555556666666666555544555566666666666655542     23455666666666665433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.5e-32  Score=255.37  Aligned_cols=280  Identities=27%  Similarity=0.381  Sum_probs=219.0

Q ss_pred             cccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        23 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      .+.++.|+++++.++.++.+..+++|++|++++|.++.++. +.++++|++|++++|.+....    + +..+++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT----P-LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccCh----h-hcCCCCCCEEE
Confidence            46899999999999999988889999999999999999887 899999999999999998742    2 77899999999


Q ss_pred             ccCCCCCCCCCCccccCCcEEEccCCCcccccCC--------------------cccccCcceEEccCCcCCCcccccCC
Q 018662          103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL--------------------SNVTDTLKELYVSKNEVPKMEEIEHF  162 (352)
Q Consensus       103 l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~~~L~~L~l~~~~~~~~~~~~~~  162 (352)
                      +++|.+..++.+..+++|++|++++|.+......                    ...+++|++|++++|.+..+..+..+
T Consensus       119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l  198 (466)
T 1o6v_A          119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  198 (466)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             CCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccC
Confidence            9999999988899999999999999987765431                    12245666666666666666566666


Q ss_pred             CCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCC
Q 018662          163 HDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS  241 (352)
Q Consensus       163 ~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  241 (352)
                      ++|++|++++|.+.....+..+++|+.|++++|.+... .+..+++|+.|++++|.+...+.+..+++|+.|++++|.+.
T Consensus       199 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~  278 (466)
T 1o6v_A          199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS  278 (466)
T ss_dssp             TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC
T ss_pred             CCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccC
Confidence            77777777777666555566677777777777766655 55667777777777777777665677777788888877777


Q ss_pred             CCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccc
Q 018662          242 KMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL  313 (352)
Q Consensus       242 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  313 (352)
                      +++.+..+++|+.|++++|++++++.+..+++|+.|++++|.++++++     +..+++|+.|++++|++.+
T Consensus       279 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          279 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSSCCCC
T ss_pred             ccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECCCCccCC
Confidence            776677777888888888888777667777888888888888876543     4567888888888886543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-31  Score=248.64  Aligned_cols=288  Identities=24%  Similarity=0.324  Sum_probs=236.9

Q ss_pred             ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCccccccccccccCCCC
Q 018662           22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL   98 (352)
Q Consensus        22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L   98 (352)
                      .++++++|+++++++++++.  +..+++|++|++++|.++.+ |..|.++++|++|++++|.++..   +...|..+++|
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L  106 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI---PLGVFTGLSNL  106 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC---CTTSSTTCTTC
T ss_pred             CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc---CcccccCCCCC
Confidence            35678999999999988754  44568899999999999876 55688999999999999988875   23346678899


Q ss_pred             cEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCC
Q 018662           99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSN  173 (352)
Q Consensus        99 ~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~  173 (352)
                      ++|++++|.+..+++  +..+++|++|++++|.+..+.+ .+..+++|++|++++|.+....  .+..+++|+.|++.+|
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            999999998886643  7788999999999998877654 3445788999999999887743  4788899999999998


Q ss_pred             ccCCc--ccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--
Q 018662          174 RLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--  244 (352)
Q Consensus       174 ~l~~~--~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--  244 (352)
                      .+..+  ..+..+++|+.|++++|.....   ......+|+.|++++|.++..+  .+..+++|+.|++++|.+..++  
T Consensus       187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  266 (477)
T 2id5_A          187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS  266 (477)
T ss_dssp             CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred             cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence            87633  3578888999999988765443   3334458999999999998886  4778999999999999998865  


Q ss_pred             CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          245 GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       245 ~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      .+..+++|+.|++++|+++++  ..+..+++|+.|++++|.++.++   ...+..+++|++|++++|++.|++
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE---ESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC---GGGBSCGGGCCEEECCSSCEECSG
T ss_pred             hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC---HhHcCCCcccCEEEccCCCccCcc
Confidence            478899999999999999887  57889999999999999999876   346778899999999999999988

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=7.5e-31  Score=238.58  Aligned_cols=276  Identities=21%  Similarity=0.235  Sum_probs=199.6

Q ss_pred             ccCceeecCCCCCcCCCCC--CCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662           24 LSNTVLDLTSFQLHDLDSV--EFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  100 (352)
                      .+++.++++++.++.++..  ..+++|++|++++|.++.++. .+..+++|++|++++|.++...   ...+..+++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~  121 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP---PHVFQNVPLLTV  121 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC---HHHhcCCCCCCE
Confidence            6788999999999888763  446889999999999987765 5888999999999999888753   334667889999


Q ss_pred             EEccCCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCC
Q 018662          101 LILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV  177 (352)
Q Consensus       101 L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  177 (352)
                      |++++|.+..+|.  +..+++|++|++++|.+....+. ...+++|++|++++|.+... .+..+++|+.+++++|.+..
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCCSE
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeecccccccc
Confidence            9999999988886  57889999999999988876543 44578899999999888764 35667778888888776643


Q ss_pred             cccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCC--CCCCCCCCCcEE
Q 018662          178 MENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVL  255 (352)
Q Consensus       178 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L  255 (352)
                         +...+.|+.|++++|.+........++|+.|++++|.++..+.+..+++|+.|++++|.+.++  ..+..+++|++|
T Consensus       201 ---~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          201 ---LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  277 (390)
T ss_dssp             ---EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             ---cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence               233456777777777766664455566777777777766666666667777777777766654  235566667777


Q ss_pred             EcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          256 DVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       256 ~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      ++++|+++++ ..+..+++|++|++++|.++.++....    .+++|+.|++++|+
T Consensus       278 ~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          278 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP----QFDRLENLYLDHNS  329 (390)
T ss_dssp             ECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH----HHTTCSEEECCSSC
T ss_pred             ECCCCcCcccCcccCCCCCCCEEECCCCcceecCcccc----ccCcCCEEECCCCc
Confidence            7777776665 334456667777777777666554322    23566666666664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.98  E-value=4.9e-31  Score=246.07  Aligned_cols=304  Identities=20%  Similarity=0.271  Sum_probs=256.2

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  104 (352)
                      -+.+++++..++.+|. .+++++++|++++|.++.++ ..|.++++|++|++++|.++...   +..|..+++|++|+++
T Consensus        13 ~~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE---PGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TTEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC---hhhhhCCccCCEEECC
Confidence            4678999999999886 67899999999999999885 46999999999999999998863   3467789999999999


Q ss_pred             CCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccCCcc
Q 018662          105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVME  179 (352)
Q Consensus       105 ~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~  179 (352)
                      +|.+..++.  +..+++|++|++++|.+....+ .+..+++|++|++++|.+...  ..+..+++|++|++++|.+..++
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            999999886  7889999999999999987654 445589999999999988773  46889999999999999987553


Q ss_pred             --cccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCCCC--CCCCCC
Q 018662          180 --NLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISKME--GLSTLV  250 (352)
Q Consensus       180 --~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~~~--~~~~~~  250 (352)
                        .+..+++|+.|++++|.+...   .+..+++|+.|++++|..... + ......+|+.|++++|.++.++  .+..++
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence              478999999999999998877   677889999999999865443 2 3344568999999999999887  478889


Q ss_pred             CCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHH
Q 018662          251 NLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYS  328 (352)
Q Consensus       251 ~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  328 (352)
                      +|+.|++++|.++++  ..+..+++|++|++++|.++.++   ...+..+++|+.|++++|.    +..++...|..   
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~---  318 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE---PYAFRGLNYLRVLNVSGNQ----LTTLEESVFHS---  318 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC---TTTBTTCTTCCEEECCSSC----CSCCCGGGBSC---
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC---HHHhcCcccCCEEECCCCc----CceeCHhHcCC---
Confidence            999999999999887  46888999999999999999764   3456788999999999994    55566665653   


Q ss_pred             HHHHhhhhccCceeceeeeecc
Q 018662          329 RLILMYFFRSHSVLGFSFCQDY  350 (352)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~  350 (352)
                             +.+++.+++++|.+.
T Consensus       319 -------l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          319 -------VGNLETLILDSNPLA  333 (477)
T ss_dssp             -------GGGCCEEECCSSCEE
T ss_pred             -------CcccCEEEccCCCcc
Confidence                   567888888877654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.98  E-value=5.1e-31  Score=244.48  Aligned_cols=288  Identities=19%  Similarity=0.272  Sum_probs=215.6

Q ss_pred             ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCC-cch-hhhhcCCCCcEEeccCCccCccccccccccccCCC
Q 018662           22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT-SLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG   97 (352)
Q Consensus        22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~-~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~   97 (352)
                      .++++++|+++++.++++++  +..+++|++|++++|.+. .++ ..|.++++|++|++++|.++...   +..+..+++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~  104 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE---TGAFNGLAN  104 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC---TTTTTTCTT
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC---hhhccCccc
Confidence            45678888888888887643  445678888888888776 554 34777888888888888777652   334566778


Q ss_pred             CcEEEccCCCCCC--CCC--CccccCCcEEEccCCCcccccCC--cccccCcceEEccCCcCCCc--cccc---------
Q 018662           98 LEELILRDNKLMK--IPD--VSIFKKLSVFDVSFNEITSSHGL--SNVTDTLKELYVSKNEVPKM--EEIE---------  160 (352)
Q Consensus        98 L~~L~l~~~~l~~--l~~--~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~~~---------  160 (352)
                      |++|++++|.+.+  .+.  +..+++|++|++++|.+....+.  ...+++|++|++++|.+...  ..+.         
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~  184 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL  184 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence            8888888877765  222  66677788888888777766443  34567778888877766552  1121         


Q ss_pred             -------------------------CCCCCcEEEcCCCccCCc--cc---------------------------------
Q 018662          161 -------------------------HFHDLQILEFGSNRLRVM--EN---------------------------------  180 (352)
Q Consensus       161 -------------------------~~~~L~~L~l~~~~l~~~--~~---------------------------------  180 (352)
                                               .+++|++|++++|.+...  ..                                 
T Consensus       185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  264 (455)
T 3v47_A          185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP  264 (455)
T ss_dssp             EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred             cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence                                     335677777777765310  00                                 


Q ss_pred             ----cc--CCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCC
Q 018662          181 ----LQ--NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLS  247 (352)
Q Consensus       181 ----~~--~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~  247 (352)
                          +.  ..++|+.+++++|.+...   .+..+++|+.|++++|.+...+  .+..+++|+.|++++|.+.++.  .+.
T Consensus       265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  344 (455)
T 3v47_A          265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE  344 (455)
T ss_dssp             CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred             cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence                00  125788888888888776   5778899999999999998773  5778999999999999998763  478


Q ss_pred             CCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          248 TLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       248 ~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      .+++|++|++++|+++++  ..+..+++|++|++++|.++.++.   ..+..+++|+.|++++|++.|++
T Consensus       345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH---hHhccCCcccEEEccCCCcccCC
Confidence            899999999999999887  568889999999999999998763   35678899999999999999999

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=4.2e-30  Score=237.65  Aligned_cols=275  Identities=23%  Similarity=0.238  Sum_probs=183.0

Q ss_pred             ccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662           20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (352)
Q Consensus        20 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~   99 (352)
                      +...+++++|+++++.+++++.+..+++|++|++++|.++.++  +..+++|++|++++|.+++.      .+..+++|+
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~------~~~~l~~L~  109 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL------DVTPLTKLT  109 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC------CCTTCTTCC
T ss_pred             hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee------ecCCCCcCC
Confidence            3445678888888888887776666778888888888887775  67778888888888877763      155677788


Q ss_pred             EEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcc
Q 018662          100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME  179 (352)
Q Consensus       100 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  179 (352)
                      +|++++|.+..++ +..+++|++|++++|.+.++.  ...+++|++|++++|...+...+..+++|++|++++|.++.++
T Consensus       110 ~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~  186 (457)
T 3bz5_A          110 YLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD  186 (457)
T ss_dssp             EEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC
T ss_pred             EEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec
Confidence            8888888777765 677778888888887777652  3346677777777774333224666677777777777666554


Q ss_pred             cccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCC--------------
Q 018662          180 NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--------------  245 (352)
Q Consensus       180 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------  245 (352)
                       +..+++|+.|++++|.+....+..+++|+.|++++|.++++| +..+++|+.|++++|.+++++.              
T Consensus       187 -l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n  264 (457)
T 3bz5_A          187 -VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT  264 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC
T ss_pred             -cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC
Confidence             666667777777777666666666667777777777666665 5566666666666666655431              


Q ss_pred             -----------------CCCCCCCcEEEcCCCcCCCc----------ccccCCCCCCeEEcCCCCCcchHHHHHHHhccc
Q 018662          246 -----------------LSTLVNLHVLDVSSNKLTLV----------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR  298 (352)
Q Consensus       246 -----------------~~~~~~L~~L~l~~n~l~~~----------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~  298 (352)
                                       ...+++|+.|++++|...+.          -.+..+++|++|++++|.++.++      +..|
T Consensus       265 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~------l~~l  338 (457)
T 3bz5_A          265 DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD------VSHN  338 (457)
T ss_dssp             CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC------CTTC
T ss_pred             CCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc------cccC
Confidence                             12234455555555542111          02445567777777777777642      4567


Q ss_pred             cCccEeeccCCCccc
Q 018662          299 ETLTTIYLENNPQNL  313 (352)
Q Consensus       299 ~~L~~L~l~~n~~~~  313 (352)
                      ++|+.|++++|.+.+
T Consensus       339 ~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          339 TKLKSLSCVNAHIQD  353 (457)
T ss_dssp             TTCSEEECCSSCCCB
T ss_pred             CcCcEEECCCCCCCC
Confidence            788888888886554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=1.1e-30  Score=242.31  Aligned_cols=306  Identities=21%  Similarity=0.277  Sum_probs=243.6

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      .-+.++++++.++.+|.  .++++++|++++|.++.+ |..+.++++|++|++++|.+....  ....|..+++|++|++
T Consensus        11 ~~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i--~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           11 IGYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI--RNNTFRGLSSLIILKL   86 (455)
T ss_dssp             ETTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEE--CTTTTTTCTTCCEEEC
T ss_pred             EccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceE--CcccccccccCCEEeC
Confidence            34678999999999987  779999999999999977 556999999999999999886432  2345778999999999


Q ss_pred             cCCCCCCC-CC-CccccCCcEEEccCCCcccc-c--CCcccccCcceEEccCCcCCCc--cc-ccCCCCCcEEEcCCCcc
Q 018662          104 RDNKLMKI-PD-VSIFKKLSVFDVSFNEITSS-H--GLSNVTDTLKELYVSKNEVPKM--EE-IEHFHDLQILEFGSNRL  175 (352)
Q Consensus       104 ~~~~l~~l-~~-~~~~~~L~~L~l~~~~~~~~-~--~~~~~~~~L~~L~l~~~~~~~~--~~-~~~~~~L~~L~l~~~~l  175 (352)
                      ++|.+..+ |. +..+++|++|++++|.+.+. +  .....+++|++|++++|.+...  .. +..+++|++|++++|.+
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            99999876 43 88899999999999999863 2  2245588999999999998874  22 78999999999999987


Q ss_pred             CCc--cccc----------------------------------CCCCCcEEEccCCcccee-----------------cC
Q 018662          176 RVM--ENLQ----------------------------------NLTNLQELWLGRNRIKVV-----------------NL  202 (352)
Q Consensus       176 ~~~--~~~~----------------------------------~~~~L~~L~l~~~~l~~~-----------------~~  202 (352)
                      ...  ..+.                                  .+++|+.|++++|.+...                 .+
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            532  2222                                  235688888888765431                 00


Q ss_pred             C-------------------------CCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCc
Q 018662          203 C-------------------------GLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLH  253 (352)
Q Consensus       203 ~-------------------------~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~  253 (352)
                      .                         ..++|+.+++++|.+...+  .+..+++|+.|++++|.+.+++  .+..+++|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  326 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL  326 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence            0                         1257888888888887662  4778899999999999998763  578889999


Q ss_pred             EEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHH
Q 018662          254 VLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLI  331 (352)
Q Consensus       254 ~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  331 (352)
                      +|++++|.++++  ..+..+++|++|++++|.++.++   ...+..+++|++|++++|.    +..+|...|..      
T Consensus       327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~------  393 (455)
T 3v47_A          327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG---DQSFLGLPNLKELALDTNQ----LKSVPDGIFDR------  393 (455)
T ss_dssp             EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSC----CSCCCTTTTTT------
T ss_pred             EEECCCCccCCcChhHhcCcccCCEEECCCCcccccC---hhhccccccccEEECCCCc----cccCCHhHhcc------
Confidence            999999999877  56788999999999999998763   3456778999999999995    44567666653      


Q ss_pred             HhhhhccCceeceeeeeccC
Q 018662          332 LMYFFRSHSVLGFSFCQDYG  351 (352)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~  351 (352)
                          +++++.+++++|++.+
T Consensus       394 ----l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          394 ----LTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             ----CTTCCEEECCSSCBCC
T ss_pred             ----CCcccEEEccCCCccc
Confidence                5788999999888765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=3.1e-30  Score=234.49  Aligned_cols=284  Identities=23%  Similarity=0.308  Sum_probs=241.0

Q ss_pred             cccccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccc
Q 018662           17 DQAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWD   93 (352)
Q Consensus        17 ~~~~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   93 (352)
                      +.++...++|++|+++++.+++++.  +..+++|++|++++|.+..+++. +.++++|++|++++|.++..   +...|.
T Consensus        62 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~  138 (390)
T 3o6n_A           62 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL---PRGIFH  138 (390)
T ss_dssp             THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTT
T ss_pred             hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC---CHHHhc
Confidence            3446667899999999999998864  45679999999999999988654 89999999999999999874   223357


Q ss_pred             cCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcC
Q 018662           94 ALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFG  171 (352)
Q Consensus        94 ~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  171 (352)
                      .+++|++|++++|.+..+++  +..+++|++|++++|.+....  ...+++|+.+++++|.+...   ...+.|+.++++
T Consensus       139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~l~  213 (390)
T 3o6n_A          139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL---AIPIAVEELDAS  213 (390)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEE---ECCSSCSEEECC
T ss_pred             CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccccc---CCCCcceEEECC
Confidence            79999999999999998765  888999999999999988763  34578999999999987653   455689999999


Q ss_pred             CCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCC--cCccccccCcEEECCCCCCCCCCC-CC
Q 018662          172 SNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG-LS  247 (352)
Q Consensus       172 ~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~-~~  247 (352)
                      +|.+...+. ...++|+.|++++|.+... .+..+++|+.|++++|.+...  ..+..+++|+.|++++|++++++. ..
T Consensus       214 ~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (390)
T 3o6n_A          214 HNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ  292 (390)
T ss_dssp             SSCCCEEEC-CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSS
T ss_pred             CCeeeeccc-cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccC
Confidence            998875533 3457899999999998887 677899999999999999877  257789999999999999998764 45


Q ss_pred             CCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          248 TLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       248 ~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      .+++|++|++++|+++.+ +.+..+++|+.|++++|.++.++      ...+++|+.|++++|++.|+.
T Consensus       293 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC------chhhccCCEEEcCCCCccchh
Confidence            789999999999999988 56778899999999999999764      466899999999999998875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=1e-29  Score=244.06  Aligned_cols=291  Identities=25%  Similarity=0.332  Sum_probs=247.4

Q ss_pred             cCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           25 SNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      +++.|+++++.+++++.  +..+++|++|++++|.++.+|..+.++++|++|++++|.++...   ...+..+++|++|+
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~  331 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC---QISASNFPSLTHLS  331 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG---GGCGGGCTTCSEEE
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc---hhhhhccCcCCEEE
Confidence            78999999999999876  44568999999999999999999999999999999999998753   34567789999999


Q ss_pred             ccCCCCC-CCCC--CccccCCcEEEccCCCccccc---CCcccccCcceEEccCCcCCC--cccccCCCCCcEEEcCCCc
Q 018662          103 LRDNKLM-KIPD--VSIFKKLSVFDVSFNEITSSH---GLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSNR  174 (352)
Q Consensus       103 l~~~~l~-~l~~--~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~  174 (352)
                      +++|.+. .++.  +..+++|++|++++|.+....   .....+++|++|++++|.+..  +..+..+++|++|++++|.
T Consensus       332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            9999877 4554  788999999999999998764   344558999999999998876  3568889999999999998


Q ss_pred             cCCc---ccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC-----cCccccccCcEEECCCCCCCCC
Q 018662          175 LRVM---ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM-----KGFEECIALEELYLSHNGISKM  243 (352)
Q Consensus       175 l~~~---~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~  243 (352)
                      +...   ..+..+++|+.|++++|.+...   .+..+++|+.|++++|.+.+.     ..+..+++|+.|++++|.++++
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence            8633   3378899999999999988765   577899999999999998763     2477899999999999999886


Q ss_pred             C--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccC
Q 018662          244 E--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLP  319 (352)
Q Consensus       244 ~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  319 (352)
                      .  .+..+++|++|++++|++++.  ..+..++.| .|++++|.++.+++   ..+..+++|+.|++++||+.|++   +
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~c~c---~  564 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP---SLLPILSQQRTINLRQNPLDCTC---S  564 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG---GGHHHHHTSSEEECTTCCEECSG---G
T ss_pred             ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH---hhcccCCCCCEEeCCCCCccccC---C
Confidence            3  578899999999999999877  678889999 99999999997653   33455799999999999999998   4


Q ss_pred             CccHHH
Q 018662          320 SDKFSQ  325 (352)
Q Consensus       320 ~~~~~~  325 (352)
                      ..+|..
T Consensus       565 ~~~~~~  570 (606)
T 3t6q_A          565 NIYFLE  570 (606)
T ss_dssp             GHHHHH
T ss_pred             cHHHHH
Confidence            444543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=9.7e-30  Score=243.46  Aligned_cols=276  Identities=21%  Similarity=0.235  Sum_probs=188.0

Q ss_pred             ccCceeecCCCCCcCCCCC--CCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662           24 LSNTVLDLTSFQLHDLDSV--EFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  100 (352)
                      .+++.++++++.+..+|..  ..+++|++|++++|.+..+++ .|..+++|++|++++|.+++..   ...|..+++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~  127 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP---PHVFQNVPLLTV  127 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC---HHHHcCCCCCCE
Confidence            5678888888888888763  346888889998888887765 5888888999999888888753   334567888888


Q ss_pred             EEccCCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCC
Q 018662          101 LILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV  177 (352)
Q Consensus       101 L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  177 (352)
                      |++++|.+..+|.  +..+++|++|++++|.+.+.++. +..+++|++|++++|.+... .+..+++|+.+++++|.+..
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSCCSE
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCcccc
Confidence            8988888888876  57788888888888888876653 44578888888888887764 35566777777777776542


Q ss_pred             cccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCC--CCCCCCCCCcEE
Q 018662          178 MENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVL  255 (352)
Q Consensus       178 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L  255 (352)
                         +...+.|+.|++++|.+........++|+.|++++|.+++.+.+..+++|+.|++++|.+.++  ..+..+++|+.|
T Consensus       207 ---l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  283 (597)
T 3oja_B          207 ---LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  283 (597)
T ss_dssp             ---EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             ---ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence               233445666666666666554344456666666666666655566666666666666666554  235556666666


Q ss_pred             EcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          256 DVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       256 ~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      ++++|.++++ ..+..+++|+.|++++|.++.+|....    .+++|+.|++++|+
T Consensus       284 ~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~----~l~~L~~L~L~~N~  335 (597)
T 3oja_B          284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP----QFDRLENLYLDHNS  335 (597)
T ss_dssp             ECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH----HHTTCSEEECCSSC
T ss_pred             ECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccc----cCCCCCEEECCCCC
Confidence            6666666655 333445666666666666665553322    23555555555553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=239.12  Aligned_cols=103  Identities=19%  Similarity=0.208  Sum_probs=88.9

Q ss_pred             ccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662           24 LSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  100 (352)
                      +++++|+++++.++++++  +..+++|++|++++|+++.+ |..|.++++|++|++++|.++...    ..  .+++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp----~~--~l~~L~~   94 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS----CH--PTVNLKH   94 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEE----CC--CCCCCSE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecC----cc--ccCCccE
Confidence            789999999999998864  56679999999999999977 567999999999999999998631    12  6899999


Q ss_pred             EEccCCCCCC--CCC-CccccCCcEEEccCCCccc
Q 018662          101 LILRDNKLMK--IPD-VSIFKKLSVFDVSFNEITS  132 (352)
Q Consensus       101 L~l~~~~l~~--l~~-~~~~~~L~~L~l~~~~~~~  132 (352)
                      |++++|.+..  +|. +..+++|++|++++|.+..
T Consensus        95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             EeccCCccccccchhhhccCCcceEEEecCcccch
Confidence            9999999986  444 8889999999999998865

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=1.2e-29  Score=243.63  Aligned_cols=215  Identities=22%  Similarity=0.263  Sum_probs=103.4

Q ss_pred             CCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCC---cccccCCCCCcEEEc
Q 018662           96 AGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPK---MEEIEHFHDLQILEF  170 (352)
Q Consensus        96 ~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l  170 (352)
                      ++|++|++++|.+..+|. +..+++|++|++++|.+....+ ....+++|++|++++|.+..   ...+..+++|+++++
T Consensus       278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence            334444444444333333 3333444444444444333221 12223344444444443331   112344444555555


Q ss_pred             CCCccCCc----ccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc---CccccccCcEEECCCCCC
Q 018662          171 GSNRLRVM----ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLSHNGI  240 (352)
Q Consensus       171 ~~~~l~~~----~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~n~l  240 (352)
                      ++|.+...    ..+..+++|+.|++++|.+...   .+..+++|+.|++++|.+....   .+..+++|+.|++++|.+
T Consensus       358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  437 (606)
T 3t6q_A          358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL  437 (606)
T ss_dssp             CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred             CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence            54444321    2344455555555555554443   3444555555555555554331   144555666666666655


Q ss_pred             CCCC--CCCCCCCCcEEEcCCCcCCCc-----ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccc
Q 018662          241 SKME--GLSTLVNLHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL  313 (352)
Q Consensus       241 ~~~~--~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  313 (352)
                      ....  .+..+++|++|++++|++++.     ..+..+++|+.|++++|.++.++   ...+..+++|++|++++|.+.+
T Consensus       438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID---QHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCCCG
T ss_pred             CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC---hhhhccccCCCEEECCCCccCc
Confidence            5432  345566666666666666542     23555666666666666666443   2234556666666666664443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.1e-29  Score=243.10  Aligned_cols=283  Identities=23%  Similarity=0.304  Sum_probs=238.1

Q ss_pred             ccccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCcccccccccccc
Q 018662           18 QAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDA   94 (352)
Q Consensus        18 ~~~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   94 (352)
                      .++...++|+.|+++++.++++++  +..+++|++|++++|.+..+++. |.++++|++|++++|.++..   +...|..
T Consensus        69 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~~  145 (597)
T 3oja_B           69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL---PRGIFHN  145 (597)
T ss_dssp             HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTT
T ss_pred             HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC---CHHHhcc
Confidence            345666899999999999999864  55679999999999999988765 79999999999999999875   2234678


Q ss_pred             CCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCC
Q 018662           95 LAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS  172 (352)
Q Consensus        95 l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  172 (352)
                      +++|++|++++|.+..+++  +..+++|++|++++|.+....  ...+++|+.|++++|.+..   +...+.|+.|++++
T Consensus       146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~---l~~~~~L~~L~ls~  220 (597)
T 3oja_B          146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST---LAIPIAVEELDASH  220 (597)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE---EECCTTCSEEECCS
T ss_pred             CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc---ccCCchhheeeccC
Confidence            9999999999999998765  888999999999999998764  3447899999999997765   34567899999999


Q ss_pred             CccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC-CCC
Q 018662          173 NRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG-LST  248 (352)
Q Consensus       173 ~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~-~~~  248 (352)
                      |.+..++.. ..++|+.|++++|.+... .+..+++|+.|++++|.+.+.+  .+..+++|+.|++++|.+.+++. +..
T Consensus       221 n~l~~~~~~-~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  299 (597)
T 3oja_B          221 NSINVVRGP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP  299 (597)
T ss_dssp             SCCCEEECS-CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSC
T ss_pred             Ccccccccc-cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccccc
Confidence            988644332 236899999999998877 6778899999999999988772  57789999999999999998764 456


Q ss_pred             CCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          249 LVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       249 ~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++      ...+++|+.|++++|+|.|..
T Consensus       300 l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC------hhhcCCCCEEEeeCCCCCChh
Confidence            88999999999999887 56778899999999999999764      466799999999999998765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=3.4e-29  Score=238.22  Aligned_cols=291  Identities=21%  Similarity=0.259  Sum_probs=183.9

Q ss_pred             cccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662           23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (352)
Q Consensus        23 ~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~   99 (352)
                      ++++++|++++|.++++++  +..+++|++|++++|.++.+ |..|.++++|++|++++|.++...    ..  .+++|+
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp----~~--~l~~L~  124 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS----CC--PMASLR  124 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEEC----SC--CCTTCS
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccC----cc--ccccCC
Confidence            3678888888888887763  45567888888888888876 445778888888888888877531    11  578888


Q ss_pred             EEEccCCCCCCCC--C-CccccCCcEEEccCCCcccccCCcccccCc--ceEEccCCcC---------------------
Q 018662          100 ELILRDNKLMKIP--D-VSIFKKLSVFDVSFNEITSSHGLSNVTDTL--KELYVSKNEV---------------------  153 (352)
Q Consensus       100 ~L~l~~~~l~~l~--~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~---------------------  153 (352)
                      +|++++|.+..++  . +..+++|++|++++|.+....  ...+.+|  ++|++++|.+                     
T Consensus       125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~  202 (562)
T 3a79_B          125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV  202 (562)
T ss_dssp             EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT--TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred             EEECCCCCccccCchHhhcccCcccEEecCCCccccCc--hhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence            8888888887654  2 777888888888888776421  1112222  4444444333                     


Q ss_pred             --------------------------------------------------------------------------------
Q 018662          154 --------------------------------------------------------------------------------  153 (352)
Q Consensus       154 --------------------------------------------------------------------------------  153 (352)
                                                                                                      
T Consensus       203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~  282 (562)
T 3a79_B          203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN  282 (562)
T ss_dssp             ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred             ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence                                                                                            


Q ss_pred             ------CC--cccc-----------------------------------------------------cCCCCCcEEEcCC
Q 018662          154 ------PK--MEEI-----------------------------------------------------EHFHDLQILEFGS  172 (352)
Q Consensus       154 ------~~--~~~~-----------------------------------------------------~~~~~L~~L~l~~  172 (352)
                            .+  +..+                                                     ..+++|+++++++
T Consensus       283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~  362 (562)
T 3a79_B          283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ  362 (562)
T ss_dssp             EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred             EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCC
Confidence                  10  0000                                                     2334455555555


Q ss_pred             CccCC--cccccCCCCCcEEEccCCcccee-----cCCCCCCCCEEEcCCCcCCC-Cc--CccccccCcEEECCCCCCCC
Q 018662          173 NRLRV--MENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTS-MK--GFEECIALEELYLSHNGISK  242 (352)
Q Consensus       173 ~~l~~--~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~-~~--~~~~~~~L~~L~l~~n~l~~  242 (352)
                      |.+..  +..+..+++|+.|++++|.+...     .+..+++|+.|++++|.+.. .+  .+..+++|+.|++++|.+++
T Consensus       363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  442 (562)
T 3a79_B          363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG  442 (562)
T ss_dssp             SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred             CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence            55432  23445555555566555555542     24555566666666665554 33  24455566666666665543


Q ss_pred             CCCCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCc
Q 018662          243 MEGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSD  321 (352)
Q Consensus       243 ~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  321 (352)
                      ...-.-.++|++|++++|+++.+ +.+..+++|++|++++|+++.+|..   .+..+++|+.|++++|||.|++   +..
T Consensus       443 ~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~~N~~~c~c---~~~  516 (562)
T 3a79_B          443 SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG---VFDRLTSLQYIWLHDNPWDCTC---PGI  516 (562)
T ss_dssp             GGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT---STTTCTTCCCEECCSCCBCCCH---HHH
T ss_pred             chhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH---HHhcCCCCCEEEecCCCcCCCc---chH
Confidence            21111115788888888888877 4455888999999999999987643   4677899999999999999988   444


Q ss_pred             cHHHHH
Q 018662          322 KFSQIY  327 (352)
Q Consensus       322 ~~~~~~  327 (352)
                      +|...|
T Consensus       517 ~~~~~~  522 (562)
T 3a79_B          517 RYLSEW  522 (562)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            453333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.9e-29  Score=220.14  Aligned_cols=281  Identities=22%  Similarity=0.319  Sum_probs=223.5

Q ss_pred             cccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEE
Q 018662           23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL  101 (352)
Q Consensus        23 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  101 (352)
                      ...++.++++++.++.+|. .+++.+++|++++|.++.++. .+.++++|++|++++|.++...   +..+..+++|++|
T Consensus        30 ~c~l~~l~~~~~~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L  105 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS---PGAFAPLVKLERL  105 (330)
T ss_dssp             EEETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC---TTTTTTCTTCCEE
T ss_pred             cCCCeEEEecCCCccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC---HHHhcCCCCCCEE
Confidence            3478999999999999875 567899999999999998876 5899999999999999998863   3457789999999


Q ss_pred             EccCCCCCCCCCCccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCC----cccccCCCCCcEEEcCCCccC
Q 018662          102 ILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK----MEEIEHFHDLQILEFGSNRLR  176 (352)
Q Consensus       102 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~~~l~  176 (352)
                      ++++|.+..+|.. ..++|++|++++|.+...... ...+++|++|++++|.+..    ...+..+++|+++++++|.+.
T Consensus       106 ~Ls~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          106 YLSKNQLKELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             ECCSSCCSBCCSS-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCccChh-hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            9999999988762 237999999999998876543 3457899999999998853    356788899999999999887


Q ss_pred             CcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC-CCCCCC
Q 018662          177 VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME-GLSTLV  250 (352)
Q Consensus       177 ~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~-~~~~~~  250 (352)
                      .++... .++|+.|++++|.+...   .+..+++|+.|++++|.++..+  .+..+++|+.|++++|.+..++ .+..++
T Consensus       185 ~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~  263 (330)
T 1xku_A          185 TIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK  263 (330)
T ss_dssp             SCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS
T ss_pred             cCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCC
Confidence            543321 27899999999988776   5778889999999999888774  4778889999999999988875 477888


Q ss_pred             CCcEEEcCCCcCCCc--cccc------CCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          251 NLHVLDVSSNKLTLV--DDIQ------NLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       251 ~L~~L~l~~n~l~~~--~~~~------~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      +|++|++++|+++++  ..+.      ..+.++.+++++|++..++ +....+..+++++.+++++|.
T Consensus       264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~-i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE-IQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG-SCGGGGTTCCCGGGEEC----
T ss_pred             CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc-cCccccccccceeEEEecccC
Confidence            999999999998877  2232      2367888999999987543 223456777889999998883

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=9.2e-30  Score=245.08  Aligned_cols=227  Identities=15%  Similarity=0.198  Sum_probs=131.3

Q ss_pred             ccccccccccCceeecCCCCCcC------------------CCC-CC--CCCcccEEEcCCCCCC-cchhhhhcCCCCcE
Q 018662           16 PDQAVEIDLSNTVLDLTSFQLHD------------------LDS-VE--FPTNLTELDLTANRLT-SLDSRISHLSNLKK   73 (352)
Q Consensus        16 ~~~~~~~~~~l~~L~l~~~~l~~------------------~~~-~~--~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~   73 (352)
                      ++..+...++|++|+++++.+++                  +|. +.  .+++|++|++++|.+. .+|..+.++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            44456666788888888888887                  654 33  4678888888888766 67777778888888


Q ss_pred             EeccCCc-cCc-ccccccccc---ccCCCCcEEEccCCCCCCCCC---CccccCCcEEEccCCCcc-cccCCcccccCcc
Q 018662           74 LSLRQNL-IDD-AAIEPISRW---DALAGLEELILRDNKLMKIPD---VSIFKKLSVFDVSFNEIT-SSHGLSNVTDTLK  144 (352)
Q Consensus        74 L~l~~~~-~~~-~~~~~~~~~---~~l~~L~~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~  144 (352)
                      |++++|. +++ ..|..+..+   ..+++|++|++++|.+..+|.   +..+++|++|++++|.+. .++ ....+++|+
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~  356 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA  356 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence            8888886 665 333222211   223677777777777776665   566777777777777766 333 334456666


Q ss_pred             eEEccCCcCCCc-ccccCCCC-CcEEEcCCCccCCcc-cccCC--CCCcEEEccCCcccee---cCC-------CCCCCC
Q 018662          145 ELYVSKNEVPKM-EEIEHFHD-LQILEFGSNRLRVME-NLQNL--TNLQELWLGRNRIKVV---NLC-------GLKCIK  209 (352)
Q Consensus       145 ~L~l~~~~~~~~-~~~~~~~~-L~~L~l~~~~l~~~~-~~~~~--~~L~~L~l~~~~l~~~---~~~-------~~~~L~  209 (352)
                      +|++++|.+..+ ..+..+++ |++|++++|.+..++ .+...  ++|+.|++++|.+...   .+.       .+++|+
T Consensus       357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~  436 (636)
T 4eco_A          357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS  436 (636)
T ss_dssp             EEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred             EEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence            666666655542 33555555 666666666554322 22222  2455555555554432   122       333455


Q ss_pred             EEEcCCCcCCCCcC--ccccccCcEEECCCCCCCCC
Q 018662          210 KISLQSNRLTSMKG--FEECIALEELYLSHNGISKM  243 (352)
Q Consensus       210 ~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~  243 (352)
                      .|++++|.++.+|.  +..+++|+.|++++|.++.+
T Consensus       437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i  472 (636)
T 4eco_A          437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI  472 (636)
T ss_dssp             EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred             EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence            55555554444432  22344444444444444433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=7.3e-30  Score=245.09  Aligned_cols=110  Identities=22%  Similarity=0.243  Sum_probs=58.4

Q ss_pred             ccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCccccccccccccCC
Q 018662           20 VEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA   96 (352)
Q Consensus        20 ~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~   96 (352)
                      +...++|++|+++++.++++++  +..+++|++|++++|.+..+ |..|.++++|++|++++|.++...+   ..+..++
T Consensus        52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~  128 (606)
T 3vq2_A           52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES---FPIGQLI  128 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS---SCCTTCT
T ss_pred             ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc---cccCCCC
Confidence            3444555555555555555533  23345566666666655544 3445555666666666655554321   2244555


Q ss_pred             CCcEEEccCCCCCC--CCC-CccccCCcEEEccCCCccc
Q 018662           97 GLEELILRDNKLMK--IPD-VSIFKKLSVFDVSFNEITS  132 (352)
Q Consensus        97 ~L~~L~l~~~~l~~--l~~-~~~~~~L~~L~l~~~~~~~  132 (352)
                      +|++|++++|.+..  +|. +..+++|++|++++|.+..
T Consensus       129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            66666666665553  343 5555666666666555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=8.4e-29  Score=234.96  Aligned_cols=152  Identities=24%  Similarity=0.303  Sum_probs=112.8

Q ss_pred             CCCCCcEEEcCCCccCC-----cccccCCCCCcEEEccCCcccee-----cCCCCCCCCEEEcCCCcCCCCc-Ccccccc
Q 018662          161 HFHDLQILEFGSNRLRV-----MENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSMK-GFEECIA  229 (352)
Q Consensus       161 ~~~~L~~L~l~~~~l~~-----~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~  229 (352)
                      .+++|++|++++|.+..     ...++.+++|+.|++++|.+...     .+..+++|+.|++++|.++.+| .+..+++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~  411 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK  411 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence            46677788888877753     12356778888888888887654     3667788888888888887765 3556677


Q ss_pred             CcEEECCCCCCCCCCC-------------------CCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHH
Q 018662          230 LEELYLSHNGISKMEG-------------------LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESI  290 (352)
Q Consensus       230 L~~L~l~~n~l~~~~~-------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~  290 (352)
                      |+.|++++|.++.++.                   ...+++|++|++++|+++.++....+++|+.|++++|+++.++  
T Consensus       412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~--  489 (549)
T 2z81_A          412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVP--  489 (549)
T ss_dssp             CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCC--
T ss_pred             ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcC--
Confidence            7777777777655432                   1356788888888888887765667888899999999888665  


Q ss_pred             HHHHhccccCccEeeccCCCccccc
Q 018662          291 VEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       291 ~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                       ...+..+++|+.|++++|++.|++
T Consensus       490 -~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          490 -DGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             -TTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             -HHHHhcCcccCEEEecCCCccCCC
Confidence             334667889999999999998888

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=7.9e-29  Score=233.63  Aligned_cols=290  Identities=22%  Similarity=0.248  Sum_probs=209.2

Q ss_pred             ccccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccC
Q 018662           18 QAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL   95 (352)
Q Consensus        18 ~~~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l   95 (352)
                      ..+...++|++|++++|+++++.+  +..+++|++|++++|+++.+|..  .+++|++|++++|.++...  .+..+..+
T Consensus        39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~--~p~~~~~l  114 (520)
T 2z7x_B           39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALP--ICKEFGNM  114 (520)
T ss_dssp             HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCC--CCGGGGGC
T ss_pred             hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCcccccc--chhhhccC
Confidence            556777899999999999998843  45678999999999999998876  8999999999999988742  22467789


Q ss_pred             CCCcEEEccCCCCCCCCCCccccCC--cEEEccCCCc--ccccC-Cccc-------------------------------
Q 018662           96 AGLEELILRDNKLMKIPDVSIFKKL--SVFDVSFNEI--TSSHG-LSNV-------------------------------  139 (352)
Q Consensus        96 ~~L~~L~l~~~~l~~l~~~~~~~~L--~~L~l~~~~~--~~~~~-~~~~-------------------------------  139 (352)
                      ++|++|++++|.+.. ..+..+++|  ++|++++|.+  ....+ ....                               
T Consensus       115 ~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~  193 (520)
T 2z7x_B          115 SQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE  193 (520)
T ss_dssp             TTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred             CcceEEEecCcccch-hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence            999999999998875 235566666  8888877766  11100 0000                               


Q ss_pred             ----------------------------------------------------ccCcceEEccCCcCCC--ccc-------
Q 018662          140 ----------------------------------------------------TDTLKELYVSKNEVPK--MEE-------  158 (352)
Q Consensus       140 ----------------------------------------------------~~~L~~L~l~~~~~~~--~~~-------  158 (352)
                                                                          .++|++|++++|.+.+  +..       
T Consensus       194 ~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~  273 (520)
T 2z7x_B          194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT  273 (520)
T ss_dssp             ECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred             eccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccc
Confidence                                                                1145555555444331  111       


Q ss_pred             ----------------------------------------------ccCCCCCcEEEcCCCccCC--cccccCCCCCcEE
Q 018662          159 ----------------------------------------------IEHFHDLQILEFGSNRLRV--MENLQNLTNLQEL  190 (352)
Q Consensus       159 ----------------------------------------------~~~~~~L~~L~l~~~~l~~--~~~~~~~~~L~~L  190 (352)
                                                                    ...+++|++|++++|.+..  +..+..+++|+.|
T Consensus       274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  353 (520)
T 2z7x_B          274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL  353 (520)
T ss_dssp             CCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEE
T ss_pred             cCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEE
Confidence                                                          1456677777777777753  4556777788888


Q ss_pred             EccCCcccee-----cCCCCCCCCEEEcCCCcCCC-Cc--CccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcC
Q 018662          191 WLGRNRIKVV-----NLCGLKCIKKISLQSNRLTS-MK--GFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL  262 (352)
Q Consensus       191 ~l~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~-~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l  262 (352)
                      ++++|.+...     .+..+++|++|++++|.+.. .|  .+..+++|+.|++++|.+++...-...++|+.|++++|++
T Consensus       354 ~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l  433 (520)
T 2z7x_B          354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI  433 (520)
T ss_dssp             ECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCC
T ss_pred             EccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcc
Confidence            8888777753     36677888888888887776 54  3566778888888888775421111126889999999988


Q ss_pred             CCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          263 TLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       263 ~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +.+ ..+..+++|++|++++|+++.+|..   .+..+++|++|++++|++.|++
T Consensus       434 ~~ip~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          434 KSIPKQVVKLEALQELNVASNQLKSVPDG---IFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCBCCCH
T ss_pred             cccchhhhcCCCCCEEECCCCcCCccCHH---HhccCCcccEEECcCCCCcccC
Confidence            877 4466889999999999999987643   4677899999999999999988

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=3.7e-29  Score=245.74  Aligned_cols=227  Identities=16%  Similarity=0.204  Sum_probs=143.6

Q ss_pred             ccccccccccCceeecCCCCCcC------------------CCCC-C--CCCcccEEEcCCCCCC-cchhhhhcCCCCcE
Q 018662           16 PDQAVEIDLSNTVLDLTSFQLHD------------------LDSV-E--FPTNLTELDLTANRLT-SLDSRISHLSNLKK   73 (352)
Q Consensus        16 ~~~~~~~~~~l~~L~l~~~~l~~------------------~~~~-~--~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~   73 (352)
                      ++..+...++|+.|++++|.+++                  +|.. .  .+++|++|++++|.+. .+|..+.++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            45566777889999999999988                  6653 3  5788999999999866 77888889999999


Q ss_pred             EeccCCc-cCc-ccccccc----ccccCCCCcEEEccCCCCCCCCC---CccccCCcEEEccCCCcccccCCcccccCcc
Q 018662           74 LSLRQNL-IDD-AAIEPIS----RWDALAGLEELILRDNKLMKIPD---VSIFKKLSVFDVSFNEITSSHGLSNVTDTLK  144 (352)
Q Consensus        74 L~l~~~~-~~~-~~~~~~~----~~~~l~~L~~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~  144 (352)
                      |++++|. +++ ..|..+.    .+..+++|++|++++|.+..+|.   +..+++|+.|++++|.+..++ ....+++|+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~  598 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLT  598 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEES
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcce
Confidence            9999987 765 3332222    22344578888888887777776   677778888888888777555 444567777


Q ss_pred             eEEccCCcCCCc-ccccCCCC-CcEEEcCCCccCCcc-cccCC--CCCcEEEccCCcccee--c----CC--CCCCCCEE
Q 018662          145 ELYVSKNEVPKM-EEIEHFHD-LQILEFGSNRLRVME-NLQNL--TNLQELWLGRNRIKVV--N----LC--GLKCIKKI  211 (352)
Q Consensus       145 ~L~l~~~~~~~~-~~~~~~~~-L~~L~l~~~~l~~~~-~~~~~--~~L~~L~l~~~~l~~~--~----~~--~~~~L~~L  211 (352)
                      .|++++|.+..+ ..+..+++ |+.|++++|.+..++ .+...  ++|+.|++++|.+...  .    ..  ..++|+.|
T Consensus       599 ~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L  678 (876)
T 4ecn_A          599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV  678 (876)
T ss_dssp             EEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred             EEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence            777777777653 34666666 777777777665332 22222  2356666665554332  0    00  12344455


Q ss_pred             EcCCCcCCCCcC--ccccccCcEEECCCCCCCCC
Q 018662          212 SLQSNRLTSMKG--FEECIALEELYLSHNGISKM  243 (352)
Q Consensus       212 ~l~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~  243 (352)
                      ++++|.+..+|.  +..+++|+.|++++|.+..+
T Consensus       679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i  712 (876)
T 4ecn_A          679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSI  712 (876)
T ss_dssp             ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred             EccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence            555544444431  12344444444444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=4.3e-29  Score=239.71  Aligned_cols=154  Identities=18%  Similarity=0.170  Sum_probs=86.7

Q ss_pred             ccCCCCCcEEEccCCcccee----cCCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC--CC-CCCCCCC
Q 018662          181 LQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK--ME-GLSTLVN  251 (352)
Q Consensus       181 ~~~~~~L~~L~l~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~--~~-~~~~~~~  251 (352)
                      +..+++|+.|++++|.+...    .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+  ++ .+..+++
T Consensus       395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence            33444444444444443332    233445555555555554433 1 34455666666666665554  22 3556667


Q ss_pred             CcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHH
Q 018662          252 LHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSR  329 (352)
Q Consensus       252 L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  329 (352)
                      |++|++++|++++.  ..+..+++|++|++++|+++.+.   ...+..+++|++|++++|.+.    .+|.. |..+   
T Consensus       475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~----~~p~~-~~~l---  543 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD---SSHYNQLYSLSTLDCSFNRIE----TSKGI-LQHF---  543 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE---GGGTTTCTTCCEEECTTSCCC----CEESC-GGGS---
T ss_pred             CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC---HHHccCCCcCCEEECCCCcCc----ccCHh-Hhhh---
Confidence            77777777776655  34666777777777777777542   234556677777777777433    44544 4321   


Q ss_pred             HHHhhhhccCceeceeeeeccC
Q 018662          330 LILMYFFRSHSVLGFSFCQDYG  351 (352)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~  351 (352)
                            .+++.++++++|++.+
T Consensus       544 ------~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          544 ------PKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             ------CTTCCEEECCSCCCCC
T ss_pred             ------cccCcEEEccCCCccc
Confidence                  2357777777776653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=6.8e-29  Score=236.16  Aligned_cols=264  Identities=23%  Similarity=0.284  Sum_probs=196.3

Q ss_pred             ccccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccC
Q 018662           18 QAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL   95 (352)
Q Consensus        18 ~~~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l   95 (352)
                      ..+...++|++|++++|.++++++  +..+++|++|++++|.++.+|..  .+++|++|++++|.++...  .+..+..+
T Consensus        70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~--~p~~~~~l  145 (562)
T 3a79_B           70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLP--VCKEFGNL  145 (562)
T ss_dssp             GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCC--CCGGGGGC
T ss_pred             hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccC--chHhhccc
Confidence            456666788888888888887754  34457888888888888877765  6788888888888777642  12356667


Q ss_pred             CCCcEEEccCCCCCCCCCCcccc---------------------------------------------------------
Q 018662           96 AGLEELILRDNKLMKIPDVSIFK---------------------------------------------------------  118 (352)
Q Consensus        96 ~~L~~L~l~~~~l~~l~~~~~~~---------------------------------------------------------  118 (352)
                      ++|++|++++|.+... .+..++                                                         
T Consensus       146 ~~L~~L~L~~n~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~  224 (562)
T 3a79_B          146 TKLTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ  224 (562)
T ss_dssp             TTCCEEEEECSBCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred             CcccEEecCCCccccC-chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE
Confidence            7777777777765531 111222                                                         


Q ss_pred             ----------------------------------------------------CCcEEEccCCCccc-ccCCc--------
Q 018662          119 ----------------------------------------------------KLSVFDVSFNEITS-SHGLS--------  137 (352)
Q Consensus       119 ----------------------------------------------------~L~~L~l~~~~~~~-~~~~~--------  137 (352)
                                                                          +|++|++++|.+.+ ++...        
T Consensus       225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L  304 (562)
T 3a79_B          225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL  304 (562)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSC
T ss_pred             EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccc
Confidence                                                                34444444444331 11111        


Q ss_pred             ---------------------------------------------ccccCcceEEccCCcCCC--cccccCCCCCcEEEc
Q 018662          138 ---------------------------------------------NVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEF  170 (352)
Q Consensus       138 ---------------------------------------------~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l  170 (352)
                                                                   ..+++|++|++++|.+..  +..+..+++|+.|++
T Consensus       305 ~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  384 (562)
T 3a79_B          305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL  384 (562)
T ss_dssp             CEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred             hheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence                                                         345789999999998887  467889999999999


Q ss_pred             CCCccCCcc----cccCCCCCcEEEccCCccce-e---cCCCCCCCCEEEcCCCcCCCCcCcccc-ccCcEEECCCCCCC
Q 018662          171 GSNRLRVME----NLQNLTNLQELWLGRNRIKV-V---NLCGLKCIKKISLQSNRLTSMKGFEEC-IALEELYLSHNGIS  241 (352)
Q Consensus       171 ~~~~l~~~~----~~~~~~~L~~L~l~~~~l~~-~---~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~n~l~  241 (352)
                      ++|.+..++    .+..+++|+.|++++|.+.. .   .+..+++|+.|++++|.+++.. ...+ ++|+.|++++|+++
T Consensus       385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~  463 (562)
T 3a79_B          385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIM  463 (562)
T ss_dssp             CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCC
T ss_pred             CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCc
Confidence            999987543    47889999999999999877 3   4677899999999999986542 1223 79999999999999


Q ss_pred             CCC-CCCCCCCCcEEEcCCCcCCCcc-c-ccCCCCCCeEEcCCCCCcch
Q 018662          242 KME-GLSTLVNLHVLDVSSNKLTLVD-D-IQNLSRLEDLWLNDNQIESL  287 (352)
Q Consensus       242 ~~~-~~~~~~~L~~L~l~~n~l~~~~-~-~~~~~~L~~L~l~~n~i~~~  287 (352)
                      .++ .+..+++|++|++++|+++.++ . +..+++|+.|++++|++..-
T Consensus       464 ~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            986 4668899999999999999883 3 88899999999999999863

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=7.9e-30  Score=250.78  Aligned_cols=60  Identities=23%  Similarity=0.186  Sum_probs=31.8

Q ss_pred             cccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCC-cchhh-hhcCCCCcEEeccCCccC
Q 018662           23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT-SLDSR-ISHLSNLKKLSLRQNLID   82 (352)
Q Consensus        23 ~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~-~l~~~-~~~l~~L~~L~l~~~~~~   82 (352)
                      .++|++|++++|.+++..+  +..+++|++|++++|.+. .+|.. +.++++|++|++++|.++
T Consensus       293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~  356 (768)
T 3rgz_A          293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS  356 (768)
T ss_dssp             CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred             cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence            3556666666666654322  233455555555555555 44443 555555555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=8.4e-29  Score=235.96  Aligned_cols=178  Identities=22%  Similarity=0.303  Sum_probs=119.7

Q ss_pred             cCcceEEccCCcCCCc----ccccCCCCCcEEEcCCCccCCc-ccccCCCCCcEEEccCCcccee----cCCCCCCCCEE
Q 018662          141 DTLKELYVSKNEVPKM----EEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKI  211 (352)
Q Consensus       141 ~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~L~~L  211 (352)
                      ++|++|++++|.+...    ..+..+++|+++++++|.+... ..+..+++|+.|++++|.+...    .+..+++|++|
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            3444444444443331    2234455555555555554322 2255666666666666665543    35566777777


Q ss_pred             EcCCCcCCCC-c-CccccccCcEEECCCCCCCC--C-CCCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCC
Q 018662          212 SLQSNRLTSM-K-GFEECIALEELYLSHNGISK--M-EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQI  284 (352)
Q Consensus       212 ~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~--~-~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i  284 (352)
                      ++++|.+... + .+..+++|+.|++++|.+.+  + ..+..+++|++|++++|+++++  ..+..+++|+.|++++|.+
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence            7777766554 2 46677888888888887762  3 3577888899999999988876  4677889999999999999


Q ss_pred             cchHHHHHHHhccccCccEeeccCCCccccccccCCccHH
Q 018662          285 ESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFS  324 (352)
Q Consensus       285 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  324 (352)
                      +.++   ...+..+++|+.|++++|++.|++   |...|.
T Consensus       507 ~~~~---~~~~~~l~~L~~L~l~~N~~~~~~---~~~~~~  540 (570)
T 2z63_A          507 KSVP---DGIFDRLTSLQKIWLHTNPWDCSC---PRIDYL  540 (570)
T ss_dssp             SCCC---TTTTTTCTTCCEEECCSSCBCCCT---TTTHHH
T ss_pred             CCCC---HHHhhcccCCcEEEecCCcccCCC---cchHHH
Confidence            8765   345677899999999999999998   544443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=3.9e-29  Score=240.71  Aligned_cols=288  Identities=17%  Similarity=0.177  Sum_probs=190.6

Q ss_pred             cccccc--ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCC-CCc--chhhhhcC------CCCcEEeccCCccC
Q 018662           16 PDQAVE--IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANR-LTS--LDSRISHL------SNLKKLSLRQNLID   82 (352)
Q Consensus        16 ~~~~~~--~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~-l~~--l~~~~~~l------~~L~~L~l~~~~~~   82 (352)
                      .+..+.  ..++|++|++++|.+.+..+  +..+++|++|++++|+ ++.  +|..+..+      ++|++|++++|.++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            344445  67889999999998776432  4557899999999998 884  88877776      89999999999888


Q ss_pred             cccccccc--ccccCCCCcEEEccCCCCC-CCCCCccccCCcEEEccCCCcccccCCcccccC-cceEEccCCcCCCcc-
Q 018662           83 DAAIEPIS--RWDALAGLEELILRDNKLM-KIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDT-LKELYVSKNEVPKME-  157 (352)
Q Consensus        83 ~~~~~~~~--~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~-  157 (352)
                      .    .+.  .+..+++|++|++++|.+. .+|.+..+++|++|++++|.+..++.....+++ |++|++++|.+..++ 
T Consensus       319 ~----ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~  394 (636)
T 4eco_A          319 T----FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN  394 (636)
T ss_dssp             S----CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred             c----cCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch
Confidence            4    223  5677889999999999888 777777788888888888888766665556677 888888888777643 


Q ss_pred             cccCC--CCCcEEEcCCCccCC--ccccc-------CCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCcC
Q 018662          158 EIEHF--HDLQILEFGSNRLRV--MENLQ-------NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG  223 (352)
Q Consensus       158 ~~~~~--~~L~~L~l~~~~l~~--~~~~~-------~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~~  223 (352)
                      .+...  ++|+++++++|.+..  +..+.       .+++|+.|++++|.+...   .+..+++|+.|++++|.++.+|.
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~  474 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK  474 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence            33333  367777777776642  23344       555677777777766644   23345666677776666665532


Q ss_pred             --ccc-------cccCcEEECCCCCCCCCCC-CC--CCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCC------CCC
Q 018662          224 --FEE-------CIALEELYLSHNGISKMEG-LS--TLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLND------NQI  284 (352)
Q Consensus       224 --~~~-------~~~L~~L~l~~n~l~~~~~-~~--~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~------n~i  284 (352)
                        +..       +++|+.|++++|.++.++. +.  .+++|++|++++|+++++ ..+..+++|+.|++++      |.+
T Consensus       475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             SSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred             HHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc
Confidence              111       2266666666666665542 32  566666666666666665 3455566666666633      333


Q ss_pred             c-chHHHHHHHhccccCccEeeccCCCc
Q 018662          285 E-SLESIVEAVAGSRETLTTIYLENNPQ  311 (352)
Q Consensus       285 ~-~~~~~~~~~~~~~~~L~~L~l~~n~~  311 (352)
                      . .+|    ..+..+++|++|++++|.+
T Consensus       555 ~~~~p----~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          555 LREWP----EGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CCCCC----TTGGGCSSCCEEECCSSCC
T ss_pred             cccCh----HHHhcCCCCCEEECCCCcC
Confidence            3 222    2234456666666666644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=7.8e-28  Score=222.44  Aligned_cols=283  Identities=24%  Similarity=0.276  Sum_probs=187.6

Q ss_pred             cccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCC
Q 018662           19 AVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL   98 (352)
Q Consensus        19 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L   98 (352)
                      .+...++|++|+++++.+++++ +..+++|++|++++|.++.++  +.++++|++|++++|.+++.   +   +..+++|
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l---~---~~~l~~L  129 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL---D---VSQNPLL  129 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCC---C---CTTCTTC
T ss_pred             hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCee---c---CCCCCcC
Confidence            3566688999999999999885 667788999999999988875  78888999999999888773   1   5567888


Q ss_pred             cEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc
Q 018662           99 EELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM  178 (352)
Q Consensus        99 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  178 (352)
                      ++|++++|.++.++ +..+++|++|++++|...+..+ ...+++|++|++++|.+..++ +..+++|+.+++++|.+..+
T Consensus       130 ~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          130 TYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             CEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC
T ss_pred             CEEECCCCccceec-cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee
Confidence            88888888887764 5666667777776664322211 223455666666666555543 44455555555555554433


Q ss_pred             ccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc-------------------------------Ccccc
Q 018662          179 ENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK-------------------------------GFEEC  227 (352)
Q Consensus       179 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------------~~~~~  227 (352)
                       .+..+++|+.|++++|.+....+..+++|+.|++++|.+++.+                               ....+
T Consensus       207 -~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l  285 (457)
T 3bz5_A          207 -DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC  285 (457)
T ss_dssp             -CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred             -ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccccccc
Confidence             2444445555555554444444444444444444444443322                               12345


Q ss_pred             ccCcEEECCCCCCCC-CC---------CCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHH-H--
Q 018662          228 IALEELYLSHNGISK-ME---------GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEA-V--  294 (352)
Q Consensus       228 ~~L~~L~l~~n~l~~-~~---------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~--  294 (352)
                      ++|+.|++++|...+ ++         .++.+++|++|++++|++++++ +..+++|+.|++++|++++++....- .  
T Consensus       286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~-l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~  364 (457)
T 3bz5_A          286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVNAHIQDFSSVGKIPALN  364 (457)
T ss_dssp             TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCSEEECCSSCCCBCTTGGGSSGGG
T ss_pred             ccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc-cccCCcCcEEECCCCCCCCccccccccccC
Confidence            777778887775322 11         2567789999999999999984 88899999999999999976432110 0  


Q ss_pred             -----hccccCccEeeccCCCccccc
Q 018662          295 -----AGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       295 -----~~~~~~L~~L~l~~n~~~~~~  315 (352)
                           ...+..|..+++++|.++|.+
T Consensus       365 n~l~g~~~~~~l~~l~l~~N~l~g~i  390 (457)
T 3bz5_A          365 NNFEAEGQTITMPKETLTNNSLTIAV  390 (457)
T ss_dssp             TSEEEEEEEEECCCBCCBTTBEEEEC
T ss_pred             CcEEecceeeecCccccccCcEEEEc
Confidence                 012356788899999999888

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.6e-28  Score=218.41  Aligned_cols=279  Identities=21%  Similarity=0.253  Sum_probs=201.7

Q ss_pred             ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      ..++.++++++.++.+|. .+++++++|++++|.+..+++ .+.++++|++|++++|.++...   +..+..+++|++|+
T Consensus        33 c~l~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH---EKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---GGGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC---HhHhhCcCCCCEEE
Confidence            468999999999998876 556899999999999998865 5899999999999999988753   34577889999999


Q ss_pred             ccCCCCCCCCCCccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCC----cccccCCCCCcEEEcCCCccCC
Q 018662          103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK----MEEIEHFHDLQILEFGSNRLRV  177 (352)
Q Consensus       103 l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~  177 (352)
                      +++|.+..+|... .++|++|++++|.+..++.. ...+++|++|++++|.+..    +..+..+ +|+++++++|.+..
T Consensus       109 L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          109 ISKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             CCSSCCCSCCSSC-CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCCCcCCccCccc-cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            9999999888622 28899999999998877653 4457889999998888753    3345555 78888888887764


Q ss_pred             cccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC-CCCCCC
Q 018662          178 MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG-LSTLVN  251 (352)
Q Consensus       178 ~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~  251 (352)
                      ++.. ..++|+.|++++|.+...   .+..+++|+.|++++|.+...+  .+..+++|+.|++++|.++.++. +..+++
T Consensus       187 l~~~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~  265 (332)
T 2ft3_A          187 IPKD-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL  265 (332)
T ss_dssp             CCSS-SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTT
T ss_pred             cCcc-ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCcc
Confidence            4321 126777778877777665   4666777777777777777664  36677777777777777777653 566777


Q ss_pred             CcEEEcCCCcCCCc--ccccC------CCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          252 LHVLDVSSNKLTLV--DDIQN------LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       252 L~~L~l~~n~l~~~--~~~~~------~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      |++|++++|+++++  ..+..      .+.|+.+++++|++..+. .....+..+++|+.+++++|.
T Consensus       266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~-~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE-VQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG-SCGGGGTTBCCSTTEEC----
T ss_pred             CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc-cCcccccccchhhhhhccccc
Confidence            77777777777665  22222      355777777777766332 112345667777777777764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=1.4e-29  Score=249.09  Aligned_cols=289  Identities=25%  Similarity=0.250  Sum_probs=202.3

Q ss_pred             cccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCC-cchhhhhc-CCCCcEEeccCCccCccccccccccccCCCC
Q 018662           21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT-SLDSRISH-LSNLKKLSLRQNLIDDAAIEPISRWDALAGL   98 (352)
Q Consensus        21 ~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L   98 (352)
                      ...++|++|++++|.+++..+...+++|++|++++|.+. .+|..+.. +++|++|++++|.+++..   +..+..+++|
T Consensus       244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~---p~~~~~l~~L  320 (768)
T 3rgz_A          244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV---PPFFGSCSLL  320 (768)
T ss_dssp             TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC---CGGGGGCTTC
T ss_pred             hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc---chHHhcCCCc
Confidence            333444444444444443322223455666666666555 55555444 366777777766666542   2345566777


Q ss_pred             cEEEccCCCCC-CCCC--CccccCCcEEEccCCCccc-ccCCccccc-CcceEEccCCcCCC--cccccC--CCCCcEEE
Q 018662           99 EELILRDNKLM-KIPD--VSIFKKLSVFDVSFNEITS-SHGLSNVTD-TLKELYVSKNEVPK--MEEIEH--FHDLQILE  169 (352)
Q Consensus        99 ~~L~l~~~~l~-~l~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~-~L~~L~l~~~~~~~--~~~~~~--~~~L~~L~  169 (352)
                      ++|++++|.+. .+|.  +..+++|++|++++|.+.+ ++.....+. +|++|++++|.+..  +..+..  +++|++|+
T Consensus       321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~  400 (768)
T 3rgz_A          321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY  400 (768)
T ss_dssp             CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred             cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence            77777777666 4553  5667777777777777663 333333344 77777777776654  233333  67788888


Q ss_pred             cCCCccC--CcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC
Q 018662          170 FGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK  242 (352)
Q Consensus       170 l~~~~l~--~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~  242 (352)
                      +.+|.+.  .+..+..+++|+.|++++|.+...   .+..+++|+.|++++|.+.+. | .+..+++|+.|++++|.+.+
T Consensus       401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  480 (768)
T 3rgz_A          401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG  480 (768)
T ss_dssp             CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence            8888875  456688889999999999987654   677788999999999988754 3 57788999999999999885


Q ss_pred             -CC-CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          243 -ME-GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       243 -~~-~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                       ++ .+..+++|++|++++|++++.  ..+..+++|++|++++|.++...   ...+..+++|+.|++++|++.|.+
T Consensus       481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI---PAELGDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC---CGGGGGCTTCCEEECCSSEEESBC
T ss_pred             cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC---CHHHcCCCCCCEEECCCCccCCcC
Confidence             33 477889999999999999865  67888999999999999998321   234677899999999999998887

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=1.3e-28  Score=233.61  Aligned_cols=306  Identities=19%  Similarity=0.228  Sum_probs=188.0

Q ss_pred             ccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662           24 LSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  100 (352)
                      +++++|+++++.++++++  +..+++|++|++++|++..+++ .|.++++|++|++++|.+++.   ....+..+++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL---SSSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC---CHHHHTTCTTCCE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc---CHHHhccCCCCcE
Confidence            567777777777766543  3445667777777777765543 466677777777777766664   2223556667777


Q ss_pred             EEccCCCCCCC--CC-CccccCCcEEEccCCC-cccccC-CcccccCcceEEccCCcCCC--cccc--------------
Q 018662          101 LILRDNKLMKI--PD-VSIFKKLSVFDVSFNE-ITSSHG-LSNVTDTLKELYVSKNEVPK--MEEI--------------  159 (352)
Q Consensus       101 L~l~~~~l~~l--~~-~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~--------------  159 (352)
                      |++++|.+..+  +. +..+++|++|++++|. +..++. ....+++|++|++++|.+..  +..+              
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            77777666633  22 5666666666666665 333321 23335555555555554433  1111              


Q ss_pred             ----------cCCCCCcEEEcCCCccCC----------------------------------------------------
Q 018662          160 ----------EHFHDLQILEFGSNRLRV----------------------------------------------------  177 (352)
Q Consensus       160 ----------~~~~~L~~L~l~~~~l~~----------------------------------------------------  177 (352)
                                ..+++|+++++++|.+..                                                    
T Consensus       183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence                      123445555554443321                                                    


Q ss_pred             --------------------------------------------------------------cc-cc-cCCCCCcEEEcc
Q 018662          178 --------------------------------------------------------------ME-NL-QNLTNLQELWLG  193 (352)
Q Consensus       178 --------------------------------------------------------------~~-~~-~~~~~L~~L~l~  193 (352)
                                                                                    ++ .+ ..+++|+.|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred             ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence                                                                          00 11 246677777777


Q ss_pred             CCcccee------cCCCCCCCCEEEcCCCcCCCCc----CccccccCcEEECCCCCCCCCCC-CCCCCCCcEEEcCCCcC
Q 018662          194 RNRIKVV------NLCGLKCIKKISLQSNRLTSMK----GFEECIALEELYLSHNGISKMEG-LSTLVNLHVLDVSSNKL  262 (352)
Q Consensus       194 ~~~l~~~------~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l  262 (352)
                      +|.+...      .+..+++|++|++++|.++..+    .+..+++|+.|++++|+++.++. +..+++|++|++++|++
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l  422 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI  422 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCc
Confidence            7776653      2566788888888888887764    26778889999999998888753 56677788888888877


Q ss_pred             CCcc-c------------------ccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccH
Q 018662          263 TLVD-D------------------IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKF  323 (352)
Q Consensus       263 ~~~~-~------------------~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  323 (352)
                      +.++ .                  ...+++|++|++++|+++.+|+.     ..+++|+.|++++|.+.    .++...|
T Consensus       423 ~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~-----~~l~~L~~L~Ls~N~l~----~~~~~~~  493 (549)
T 2z81_A          423 RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA-----SLFPVLLVMKISRNQLK----SVPDGIF  493 (549)
T ss_dssp             SCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCG-----GGCTTCCEEECCSSCCC----CCCTTGG
T ss_pred             ccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCc-----ccCccCCEEecCCCccC----CcCHHHH
Confidence            6542 1                  12566777777777777766531     34577777777777443    3444445


Q ss_pred             HHHHHHHHHhhhhccCceeceeeeeccC
Q 018662          324 SQIYSRLILMYFFRSHSVLGFSFCQDYG  351 (352)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (352)
                      ..          +.++.++++++|++.+
T Consensus       494 ~~----------l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          494 DR----------LTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             GG----------CTTCCEEECCSSCBCC
T ss_pred             hc----------CcccCEEEecCCCccC
Confidence            43          5677777887777654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=1.1e-27  Score=221.37  Aligned_cols=261  Identities=21%  Similarity=0.243  Sum_probs=161.4

Q ss_pred             ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      .++++|+++++.+++++.  .+++|++|++++|.++++| .+.++++|++|++++|.+++..    .   ..++|++|++
T Consensus       111 ~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp----~---~~~~L~~L~L  180 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLP----D---LPPSLEFIAA  180 (454)
T ss_dssp             TTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCC----C---CCTTCCEEEC
T ss_pred             CCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccC----C---CcccccEEEC
Confidence            344444444444444432  2255666666666666655 3566666666666666655421    1   1235666666


Q ss_pred             cCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccC
Q 018662          104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN  183 (352)
Q Consensus       104 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  183 (352)
                      ++|.+..+|.+..+++|++|++++|.+.+++..   ..+|++|++++|.+..++.++.+++|+++++++|.+..++.  .
T Consensus       181 ~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~--~  255 (454)
T 1jl5_A          181 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD--L  255 (454)
T ss_dssp             CSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--C
T ss_pred             cCCcCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc--c
Confidence            666666666566666666666666666554332   24666666666666655556666666666666666654332  2


Q ss_pred             CCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCC
Q 018662          184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT  263 (352)
Q Consensus       184 ~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~  263 (352)
                      .++|+.|++++|.+..... ..++|+.|++++|.+++.+.+  .++|+.|++++|.+.+++.+  .++|++|++++|+++
T Consensus       256 ~~~L~~L~l~~N~l~~l~~-~~~~L~~L~ls~N~l~~l~~~--~~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~  330 (454)
T 1jl5_A          256 PPSLEALNVRDNYLTDLPE-LPQSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLI  330 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSEESCC--CTTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCS
T ss_pred             ccccCEEECCCCcccccCc-ccCcCCEEECcCCccCcccCc--CCcCCEEECcCCcCCcccCC--cCcCCEEECCCCccc
Confidence            3566666666666555321 235677777777766655432  25677777777776665432  257888888888888


Q ss_pred             CcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccc
Q 018662          264 LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL  313 (352)
Q Consensus       264 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  313 (352)
                      +++..  +++|+.|++++|.++.+|.       .+++|++|++++|++.+
T Consensus       331 ~lp~~--~~~L~~L~L~~N~l~~lp~-------~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          331 ELPAL--PPRLERLIASFNHLAEVPE-------LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CCCCC--CTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSS
T ss_pred             ccccc--CCcCCEEECCCCccccccc-------hhhhccEEECCCCCCCc
Confidence            76432  5789999999999887764       35889999999998776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=6.5e-29  Score=236.75  Aligned_cols=134  Identities=22%  Similarity=0.229  Sum_probs=89.0

Q ss_pred             CCCCCCCCEEEcCCCcCCCCc---CccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCC--c-ccccCCCC
Q 018662          202 LCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTL--V-DDIQNLSR  273 (352)
Q Consensus       202 ~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~--~-~~~~~~~~  273 (352)
                      +..+++|+.|++++|.+...+   .+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++  + ..+..+++
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence            344555555555555554431   345666777777777766553  235667788888888887762  2 56777888


Q ss_pred             CCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeeeccCC
Q 018662          274 LEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDYGT  352 (352)
Q Consensus       274 L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (352)
                      |++|++++|.++.+.   ...+..+++|++|++++|.+    ..++...|..          +.++..+++++|++.++
T Consensus       472 L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~----------l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          472 LTFLDLSQCQLEQLS---PTAFNSLSSLQVLNMASNQL----KSVPDGIFDR----------LTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCC----SCCCTTTTTT----------CTTCCEEECCSSCBCCC
T ss_pred             CCEEECCCCccccCC---hhhhhcccCCCEEeCCCCcC----CCCCHHHhhc----------ccCCcEEEecCCcccCC
Confidence            888888888888653   23456778888888888854    3445555543          56788888888887653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=4.5e-28  Score=238.11  Aligned_cols=258  Identities=18%  Similarity=0.172  Sum_probs=140.0

Q ss_pred             ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCC-CCc--chhhhhcCC-------CCcEEeccCCccCccccccc
Q 018662           22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANR-LTS--LDSRISHLS-------NLKKLSLRQNLIDDAAIEPI   89 (352)
Q Consensus        22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~-l~~--l~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~   89 (352)
                      ..++|++|++++|.+.+..+  +..+++|++|++++|+ ++.  +|..+.+++       +|++|++++|.++.. |. .
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-p~-~  566 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-PA-S  566 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-CC-H
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-CC-h
Confidence            56778888888877655422  3445777888888776 664  666555554       777777777777632 11 0


Q ss_pred             cccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccC-cceEEccCCcCCCcc-cccCCC--CC
Q 018662           90 SRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDT-LKELYVSKNEVPKME-EIEHFH--DL  165 (352)
Q Consensus        90 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~-~~~~~~--~L  165 (352)
                      ..+..+++|++|++++|.+..+|.+..+++|+.|++++|.+..++.....+++ |+.|++++|.+..++ .+....  +|
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L  646 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM  646 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred             hhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence            14566777777777777777776666777777777777777655555555566 777777777665532 222222  25


Q ss_pred             cEEEcCCCccCC-ccccc------CCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCcC--cc-------c
Q 018662          166 QILEFGSNRLRV-MENLQ------NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--FE-------E  226 (352)
Q Consensus       166 ~~L~l~~~~l~~-~~~~~------~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~-------~  226 (352)
                      +.|++++|.+.. ++.+.      .+++|+.|++++|.+...   .+..+++|+.|++++|.+..+|.  +.       .
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n  726 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN  726 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence            666666555531 11111      223455555555544433   12234445555555544443321  11       1


Q ss_pred             cccCcEEECCCCCCCCCCC-CC--CCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCC
Q 018662          227 CIALEELYLSHNGISKMEG-LS--TLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLND  281 (352)
Q Consensus       227 ~~~L~~L~l~~n~l~~~~~-~~--~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~  281 (352)
                      +++|+.|++++|+++.++. +.  .+++|+.|++++|.++++ ..+..+++|+.|++++
T Consensus       727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCC
T ss_pred             cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCC
Confidence            1244445555444444432 22  344444444444444444 2333444444444433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=2.4e-27  Score=230.52  Aligned_cols=294  Identities=26%  Similarity=0.266  Sum_probs=206.0

Q ss_pred             ccccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCC------cchh----hhhcCCCCcEEeccCCccCccc
Q 018662           18 QAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT------SLDS----RISHLSNLKKLSLRQNLIDDAA   85 (352)
Q Consensus        18 ~~~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~------~l~~----~~~~l~~L~~L~l~~~~~~~~~   85 (352)
                      ..+...++|+.|+++++.++++.+  +..+++|++|+++++...      .+|.    .+..+++|++|++++|.+++..
T Consensus       266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~  345 (680)
T 1ziw_A          266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK  345 (680)
T ss_dssp             TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred             ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence            445566788888888888776543  233455555555544222      1221    2444555555555555544432


Q ss_pred             cccccccccCC----------------------------CCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccc-c
Q 018662           86 IEPISRWDALA----------------------------GLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSS-H  134 (352)
Q Consensus        86 ~~~~~~~~~l~----------------------------~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~-~  134 (352)
                      +   ..+..++                            .|+.|++++|.+..+++  +..+++|+.|++++|.+.+. +
T Consensus       346 ~---~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  422 (680)
T 1ziw_A          346 S---NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT  422 (680)
T ss_dssp             T---TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred             h---hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence            1   1223333                            45555555555554432  56677777777777776542 2


Q ss_pred             -CCcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccC----CcccccCCCCCcEEEccCCcccee---cCCC
Q 018662          135 -GLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRIKVV---NLCG  204 (352)
Q Consensus       135 -~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~L~~L~l~~~~l~~~---~~~~  204 (352)
                       .....+++|++|++++|.+...  ..+..+++|+.+++.++.+.    .+..+..+++|+.|++++|.+...   .+..
T Consensus       423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~  502 (680)
T 1ziw_A          423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG  502 (680)
T ss_dssp             SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence             2333467777777777776542  45667788888888887764    335578889999999999988876   4778


Q ss_pred             CCCCCEEEcCCCcCCCCc----------CccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc--ccccC
Q 018662          205 LKCIKKISLQSNRLTSMK----------GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQN  270 (352)
Q Consensus       205 ~~~L~~L~l~~~~~~~~~----------~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~  270 (352)
                      +++|+.|++++|.++..+          .+..+++|+.|++++|+++.++.  +..+++|+.|++++|+++++  ..+..
T Consensus       503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~  582 (680)
T 1ziw_A          503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN  582 (680)
T ss_dssp             CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence            899999999999887642          26788999999999999998874  78899999999999999988  45678


Q ss_pred             CCCCCeEEcCCCCCcchHHHHHHHhc-cccCccEeeccCCCccccccc
Q 018662          271 LSRLEDLWLNDNQIESLESIVEAVAG-SRETLTTIYLENNPQNLQIIL  317 (352)
Q Consensus       271 ~~~L~~L~l~~n~i~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~  317 (352)
                      +++|+.|++++|.++.++..   .+. .+++|+.|++++|||.|++..
T Consensus       583 l~~L~~L~L~~N~l~~~~~~---~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          583 QVSLKSLNLQKNLITSVEKK---VFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CTTCCEEECTTSCCCBCCHH---HHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCCEEECCCCcCCccChh---HhcccccccCEEEccCCCcccCCcc
Confidence            99999999999999987643   233 568999999999999999853

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.6e-27  Score=211.75  Aligned_cols=283  Identities=21%  Similarity=0.304  Sum_probs=228.2

Q ss_pred             CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCC-CC-CccccCCcEE
Q 018662           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKI-PD-VSIFKKLSVF  123 (352)
Q Consensus        46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~-~~~~~~L~~L  123 (352)
                      .+++.++++++.++.+|..+  .+++++|++++|.++...   ...+..+++|++|++++|.+..+ |. +..+++|++|
T Consensus        31 c~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBC---TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeC---hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            47999999999999998755  379999999999998853   33577899999999999999987 43 8889999999


Q ss_pred             EccCCCcccccCCcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccC----CcccccCCCCCcEEEccCCcc
Q 018662          124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRI  197 (352)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~L~~L~l~~~~l  197 (352)
                      ++++|.+..++....  ++|++|++++|.+...  ..+..+++|+++++++|.+.    ....+..+++|+.|++++|.+
T Consensus       106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          106 YLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             ECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            999999987665433  7999999999998874  34889999999999999884    345678899999999999998


Q ss_pred             ceecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc-ccccCCC
Q 018662          198 KVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-DDIQNLS  272 (352)
Q Consensus       198 ~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~-~~~~~~~  272 (352)
                      ........++|+.|++++|.++..+  .+..+++|+.|++++|.+.+++  .+..+++|++|++++|+++.+ ..+..++
T Consensus       184 ~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~  263 (330)
T 1xku_A          184 TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK  263 (330)
T ss_dssp             CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS
T ss_pred             ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCC
Confidence            8775555589999999999998773  5788999999999999998864  477889999999999999988 5688899


Q ss_pred             CCCeEEcCCCCCcchHHHHHH---HhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeee
Q 018662          273 RLEDLWLNDNQIESLESIVEA---VAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFC  347 (352)
Q Consensus       273 ~L~~L~l~~n~i~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (352)
                      +|++|++++|.|+.++.....   .....+.++.|++++||+...  .+++..|..          ++++..+++++|
T Consensus       264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~--~i~~~~f~~----------~~~l~~l~L~~N  329 (330)
T 1xku_A          264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW--EIQPSTFRC----------VYVRAAVQLGNY  329 (330)
T ss_dssp             SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG--GSCGGGGTT----------CCCGGGEEC---
T ss_pred             CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc--ccCcccccc----------ccceeEEEeccc
Confidence            999999999999987632110   011247899999999987532  234444543          455666666665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=3.1e-27  Score=229.79  Aligned_cols=311  Identities=22%  Similarity=0.305  Sum_probs=202.6

Q ss_pred             ccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccCCccCccc-----cc-ccccccc
Q 018662           24 LSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAA-----IE-PISRWDA   94 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~-----~~-~~~~~~~   94 (352)
                      ++|++|+++++.++++++  +..+++|++|++++|.+..++ ..+.++++|++|+++++......     +. ....+..
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~  327 (680)
T 1ziw_A          248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW  327 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred             CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence            359999999999998764  455799999999999999664 46899999999999987544211     00 1125678


Q ss_pred             CCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCccc--ccCCcc---cccCcceEEccCCcCCCc--ccccCCCCC
Q 018662           95 LAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITS--SHGLSN---VTDTLKELYVSKNEVPKM--EEIEHFHDL  165 (352)
Q Consensus        95 l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~--~~~~~~---~~~~L~~L~l~~~~~~~~--~~~~~~~~L  165 (352)
                      +++|++|++++|.+..+++  +..+++|++|++++|.+..  +.....   ..++|+.|++++|.+...  ..+..+++|
T Consensus       328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  407 (680)
T 1ziw_A          328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL  407 (680)
T ss_dssp             CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence            9999999999999998765  7788889999988875321  111111   123556666665555442  334555555


Q ss_pred             cEEEcCCCccC--Cc-ccccCCCCCcEEEccCCcccee-----------------------------cCCCCCCCCEEEc
Q 018662          166 QILEFGSNRLR--VM-ENLQNLTNLQELWLGRNRIKVV-----------------------------NLCGLKCIKKISL  213 (352)
Q Consensus       166 ~~L~l~~~~l~--~~-~~~~~~~~L~~L~l~~~~l~~~-----------------------------~~~~~~~L~~L~l  213 (352)
                      +.|++++|.+.  .+ ..+..+++|+.+++++|.+...                             .+..+++|+.|++
T Consensus       408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L  487 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL  487 (680)
T ss_dssp             CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred             CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence            55555555542  11 2344444444454444443222                             3455667777777


Q ss_pred             CCCcCCCCc--CccccccCcEEECCCCCCCCCC----------CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEc
Q 018662          214 QSNRLTSMK--GFEECIALEELYLSHNGISKME----------GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWL  279 (352)
Q Consensus       214 ~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~----------~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l  279 (352)
                      ++|.++..+  .+..+++|+.|++++|.++.++          .+..+++|++|++++|+++.+  ..+..+++|+.|++
T Consensus       488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L  567 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL  567 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence            777766664  3566777777777777766531          255667777777777777766  24677777888888


Q ss_pred             CCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeeecc
Q 018662          280 NDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDY  350 (352)
Q Consensus       280 ~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (352)
                      ++|.++.++   ...+..+++|+.|++++|.    +..++...|..         .++++..+++++|++.
T Consensus       568 s~N~l~~l~---~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~---------~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          568 GLNNLNTLP---ASVFNNQVSLKSLNLQKNL----ITSVEKKVFGP---------AFRNLTELDMRFNPFD  622 (680)
T ss_dssp             CSSCCCCCC---TTTTTTCTTCCEEECTTSC----CCBCCHHHHHH---------HHTTCSEEECTTCCCC
T ss_pred             CCCCCCcCC---HhHhCCCCCCCEEECCCCc----CCccChhHhcc---------cccccCEEEccCCCcc
Confidence            888877665   3345667788888888884    44445444431         2466777777776654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=3.7e-27  Score=227.21  Aligned_cols=130  Identities=25%  Similarity=0.338  Sum_probs=101.7

Q ss_pred             ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCC
Q 018662           22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL   98 (352)
Q Consensus        22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L   98 (352)
                      .|+++++|++++|+|+.+++  +..+++|++|++++|+++++++. |.++++|++|+|++|.++..   +...|..+++|
T Consensus        50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l---~~~~f~~L~~L  126 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL---ALGAFSGLSSL  126 (635)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE---CGGGGTTCTTC
T ss_pred             CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC---CHHHhcCCCCC
Confidence            35678999999999998875  34468899999999999988764 88899999999999988875   33457778889


Q ss_pred             cEEEccCCCCCCCCC--CccccCCcEEEccCCCccccc--CCcccccCcceEEccCCcCC
Q 018662           99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSH--GLSNVTDTLKELYVSKNEVP  154 (352)
Q Consensus        99 ~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~  154 (352)
                      ++|++++|.++.+++  +..+++|++|++++|.+....  .....+++|++|++++|.+.
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            999999988888775  778888888888888876542  33344677888887776543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=1.3e-26  Score=220.73  Aligned_cols=260  Identities=28%  Similarity=0.263  Sum_probs=223.3

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  104 (352)
                      +++.|+++++.++.+|. .++++|++|++++|.++.+|.   .+++|++|++++|.++...     .  .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~lp~-~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp-----~--~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP-----V--LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCCCS-CCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCC-----C--CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCccCh-hhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCC-----C--CCCCCCEEECc
Confidence            58999999999998876 455899999999999999987   6799999999999988642     1  57899999999


Q ss_pred             CCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCC
Q 018662          105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL  184 (352)
Q Consensus       105 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  184 (352)
                      +|.+..+|.  .+++|+.|++++|.+..++..   .++|++|++++|.+..++.  .+++|+.|++.+|.+..++  ..+
T Consensus       110 ~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~--~~~  180 (622)
T 3g06_A          110 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLP--MLP  180 (622)
T ss_dssp             SCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC--CCC
T ss_pred             CCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCCCCCCc--ccC
Confidence            999999987  678999999999999887653   4899999999999887543  4578999999999998766  567


Q ss_pred             CCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCC
Q 018662          185 TNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL  264 (352)
Q Consensus       185 ~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~  264 (352)
                      ++|+.|++++|.+..... ..++|+.|++++|.++.++.  .+++|+.|++++|.++.++  ..+++|+.|++++|+++.
T Consensus       181 ~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~  255 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTS  255 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC
T ss_pred             CCCcEEECCCCCCCCCCC-ccchhhEEECcCCcccccCC--CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCc
Confidence            899999999999887532 35899999999999998874  3588999999999999988  566899999999999998


Q ss_pred             cccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       265 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      ++.  .+++|+.|++++|.|+.+|.    .+..+++|+.|++++|++.+..
T Consensus       256 lp~--~~~~L~~L~Ls~N~L~~lp~----~l~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          256 LPM--LPSGLLSLSVYRNQLTRLPE----SLIHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             CCC--CCTTCCEEECCSSCCCSCCG----GGGGSCTTCEEECCSCCCCHHH
T ss_pred             CCc--ccccCcEEeCCCCCCCcCCH----HHhhccccCEEEecCCCCCCcC
Confidence            865  67899999999999998764    3567899999999999877655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=2.1e-26  Score=212.64  Aligned_cols=279  Identities=24%  Similarity=0.286  Sum_probs=143.7

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccC
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD  105 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  105 (352)
                      +++|+++++.++++|.  .+++|++|++++|.++++|..   +++|++|++++|.+++..     .  ..++|++|++++
T Consensus        73 l~~L~l~~~~l~~lp~--~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~-----~--~~~~L~~L~L~~  140 (454)
T 1jl5_A           73 AHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALS-----D--LPPLLEYLGVSN  140 (454)
T ss_dssp             CSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC-----S--CCTTCCEEECCS
T ss_pred             CCEEEecCCccccCCC--CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCccc-----C--CCCCCCEEECcC
Confidence            3555555555555443  234555555555555544432   244555555555444321     0  013455555555


Q ss_pred             CCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCC--------------------C
Q 018662          106 NKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD--------------------L  165 (352)
Q Consensus       106 ~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------------L  165 (352)
                      |.+.++|.+..+++|++|++++|.+.+++..   ..+|++|++++|.+..++.++.+++                    |
T Consensus       141 n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L  217 (454)
T 1jl5_A          141 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL  217 (454)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             CCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcc
Confidence            5444444444444555555555444443221   1244444444444444334444444                    4


Q ss_pred             cEEEcCCCccCCcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCC
Q 018662          166 QILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG  245 (352)
Q Consensus       166 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  245 (352)
                      +++++++|.+..++.+..+++|+.|++++|.+.... ...++|+.|++++|.+..+|..  +++|+.|++++|.+++++.
T Consensus       218 ~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~~  294 (454)
T 1jl5_A          218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP-DLPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSE  294 (454)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC-SCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEESC
T ss_pred             cEEECcCCcCCcccccCCCCCCCEEECCCCcCCccc-ccccccCEEECCCCcccccCcc--cCcCCEEECcCCccCcccC
Confidence            455555544443334445555555555555444331 1224555555555555544322  2455555555555555443


Q ss_pred             CCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHH
Q 018662          246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQ  325 (352)
Q Consensus       246 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  325 (352)
                      +  +++|+.|++++|++++++.+  .++|+.|++++|.++.++.       .+++|+.|++++|.+.    .+|.     
T Consensus       295 ~--~~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~~lp~-------~~~~L~~L~L~~N~l~----~lp~-----  354 (454)
T 1jl5_A          295 L--PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIELPA-------LPPRLERLIASFNHLA----EVPE-----  354 (454)
T ss_dssp             C--CTTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCS----CCCC-----
T ss_pred             c--CCcCCEEECcCCcCCcccCC--cCcCCEEECCCCccccccc-------cCCcCCEEECCCCccc----cccc-----
Confidence            2  24566666666666554321  2478888888888876553       2478888888888543    4454     


Q ss_pred             HHHHHHHhhhhccCceeceeeeeccC
Q 018662          326 IYSRLILMYFFRSHSVLGFSFCQDYG  351 (352)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (352)
                               ...+++++++++|...|
T Consensus       355 ---------~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          355 ---------LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             ---------CCTTCCEEECCSSCCSS
T ss_pred             ---------hhhhccEEECCCCCCCc
Confidence                     14678888888887655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.5e-27  Score=212.15  Aligned_cols=279  Identities=23%  Similarity=0.294  Sum_probs=228.0

Q ss_pred             CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEE
Q 018662           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVF  123 (352)
Q Consensus        46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L  123 (352)
                      .+++.++++++.++.+|..+  .++|++|++++|.++...   ...+..+++|++|++++|.+..+++  +..+++|++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred             ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccC---HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence            47999999999999999765  479999999999998753   3457789999999999999998743  8889999999


Q ss_pred             EccCCCcccccCCcccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCccC----CcccccCCCCCcEEEccCCcc
Q 018662          124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRI  197 (352)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~L~~L~l~~~~l  197 (352)
                      ++++|.+..++....  ++|++|++++|.+....  .+..+++|++|++++|.+.    .+..+..+ +|+.|++++|.+
T Consensus       108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          108 YISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             ECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             ECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            999999987765443  79999999999998853  4889999999999999885    23445566 899999999998


Q ss_pred             ceecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc-ccccCCC
Q 018662          198 KVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-DDIQNLS  272 (352)
Q Consensus       198 ~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~-~~~~~~~  272 (352)
                      ........++|+.|++++|.++..+  .+..+++|+.|++++|.+.+++  .+..+++|++|++++|+++.+ ..+..++
T Consensus       185 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~  264 (332)
T 2ft3_A          185 TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK  264 (332)
T ss_dssp             SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCT
T ss_pred             CccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCc
Confidence            8875555589999999999998874  5888999999999999999875  478889999999999999988 5688899


Q ss_pred             CCCeEEcCCCCCcchHHHHHHHhcc------ccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceee
Q 018662          273 RLEDLWLNDNQIESLESIVEAVAGS------RETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSF  346 (352)
Q Consensus       273 ~L~~L~l~~n~i~~~~~~~~~~~~~------~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (352)
                      +|+.|++++|.++.++.   ..+..      .+.|+.|++++||+...  .++...|..          ++++..+++++
T Consensus       265 ~L~~L~l~~N~l~~~~~---~~~~~~~~~~~~~~l~~L~l~~N~~~~~--~~~~~~~~~----------l~~L~~l~l~~  329 (332)
T 2ft3_A          265 LLQVVYLHTNNITKVGV---NDFCPVGFGVKRAYYNGISLFNNPVPYW--EVQPATFRC----------VTDRLAIQFGN  329 (332)
T ss_dssp             TCCEEECCSSCCCBCCT---TSSSCSSCCSSSCCBSEEECCSSSSCGG--GSCGGGGTT----------BCCSTTEEC--
T ss_pred             cCCEEECCCCCCCccCh---hHccccccccccccccceEeecCccccc--ccCcccccc----------cchhhhhhccc
Confidence            99999999999998763   22222      47799999999987532  234444543          67777777776


Q ss_pred             e
Q 018662          347 C  347 (352)
Q Consensus       347 ~  347 (352)
                      |
T Consensus       330 n  330 (332)
T 2ft3_A          330 Y  330 (332)
T ss_dssp             -
T ss_pred             c
Confidence            6

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=5.3e-27  Score=232.94  Aligned_cols=283  Identities=24%  Similarity=0.252  Sum_probs=167.1

Q ss_pred             ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCC-cc-hhhhhcCCCCcEEeccCCccCccccccccccccCCC
Q 018662           22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT-SL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG   97 (352)
Q Consensus        22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~-~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~   97 (352)
                      .++++++|++++|.++++.+  +..+++|++|++++|... .+ |..|.++++|++|++++|.+....   +..|..+++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~---p~~~~~l~~   98 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH---PDAFQGLFH   98 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC---TTSSCSCSS
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC---HhHccCCcc
Confidence            67889999999999988753  455688999999998544 66 556888899999999998888753   345677888


Q ss_pred             CcEEEccCCCCCC-CCC---CccccCCcEEEccCCCcccccC--CcccccCcceEEccCCcCCCc--ccccCC--CCCcE
Q 018662           98 LEELILRDNKLMK-IPD---VSIFKKLSVFDVSFNEITSSHG--LSNVTDTLKELYVSKNEVPKM--EEIEHF--HDLQI  167 (352)
Q Consensus        98 L~~L~l~~~~l~~-l~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~--~~L~~  167 (352)
                      |++|++++|.+.. ++.   +..+++|++|++++|.+.+...  ....+++|++|++++|.+...  ..+..+  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            8999998888875 332   7788888999998888877543  345578888888888877652  333333  45555


Q ss_pred             EEcCCCccCC--cccccCCCC------CcEEEccCCcccee---------------------------------------
Q 018662          168 LEFGSNRLRV--MENLQNLTN------LQELWLGRNRIKVV---------------------------------------  200 (352)
Q Consensus       168 L~l~~~~l~~--~~~~~~~~~------L~~L~l~~~~l~~~---------------------------------------  200 (352)
                      ++++.|.+..  +..+..++.      |+.|++++|.+...                                       
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence            5555554431  112222222      44455444422110                                       


Q ss_pred             cCCC--CCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCC
Q 018662          201 NLCG--LKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLS  272 (352)
Q Consensus       201 ~~~~--~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~  272 (352)
                      .+..  .++++.|++++|.+...+  .+..+++|+.|++++|.+.++.  .+..+++|++|++++|.++++  ..+..++
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  338 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP  338 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred             hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence            0000  134555555555444331  2444555555555555554431  244445555555555555444  3344455


Q ss_pred             CCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          273 RLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       273 ~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      +|+.|++++|.++.++   ...+..+++|++|++++|.
T Consensus       339 ~L~~L~L~~N~i~~~~---~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          339 KVAYIDLQKNHIAIIQ---DQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             TCCEEECCSCCCCCCC---SSCSCSCCCCCEEEEETCC
T ss_pred             CCCEEECCCCCCCccC---hhhhcCCCCCCEEECCCCC
Confidence            5555555555554433   1223444555555555553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2e-26  Score=212.65  Aligned_cols=244  Identities=25%  Similarity=0.342  Sum_probs=179.3

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      ..+.+++++..++.+|. .++++++.|++++|.+..++. .|.++++|++|++++|.++..   ....|..+++|++|++
T Consensus        44 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i---~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI---EIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE---CGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc---ChhhccCCccCCEEEC
Confidence            45677888888888775 566788888888888887654 478888888888888887765   3345667788888888


Q ss_pred             cCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCc-cCCccc
Q 018662          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR-LRVMEN  180 (352)
Q Consensus       104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~  180 (352)
                      ++|.+..++.  +..+++|++|++++|.+..++..                     .+..+++|++|++.++. +..+  
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---------------------~~~~l~~L~~L~l~~~~~l~~i--  176 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY---------------------AFNRIPSLRRLDLGELKRLSYI--  176 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT---------------------TTTTCTTCCEEECCCCTTCCEE--
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHH---------------------HhhhCcccCEeCCCCCCCccee--
Confidence            8888877765  66777777777777776654321                     23334444444444321 1110  


Q ss_pred             ccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcC
Q 018662          181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVS  258 (352)
Q Consensus       181 ~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~  258 (352)
                                       ....+..+++|+.|++++|.++.+|.+..+++|+.|++++|.++++  ..+..+++|++|+++
T Consensus       177 -----------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  239 (440)
T 3zyj_A          177 -----------------SEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI  239 (440)
T ss_dssp             -----------------CTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             -----------------CcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence                             0013445667777777777777777778888999999999988876  357888999999999


Q ss_pred             CCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          259 SNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       259 ~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +|+++++  ..+..+++|+.|++++|.++.++   ...+..+++|+.|++++|||.|++
T Consensus       240 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLP---HDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             TCCCCEECTTSSTTCTTCCEEECTTSCCCCCC---TTTTSSCTTCCEEECCSSCEECSS
T ss_pred             CCceeEEChhhhcCCCCCCEEECCCCCCCccC---hhHhccccCCCEEEcCCCCccCCC
Confidence            9999887  56788899999999999999776   345677899999999999999988

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=9.5e-27  Score=231.14  Aligned_cols=304  Identities=19%  Similarity=0.222  Sum_probs=241.4

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  104 (352)
                      -+..++++++++.+|.  .++++++|++++|.++.+ +..|.++++|++|++++|......  ....|..+++|++|+++
T Consensus         6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i--~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI--DKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE--CTTTTSSCTTCCEEECT
T ss_pred             ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcccc--CHHHhcCCCCCCEEECC
Confidence            3678999999999997  889999999999999977 456999999999999999544321  23567889999999999


Q ss_pred             CCCCCCC-CC-CccccCCcEEEccCCCcccc-cC--CcccccCcceEEccCCcCCCc---ccccCCCCCcEEEcCCCccC
Q 018662          105 DNKLMKI-PD-VSIFKKLSVFDVSFNEITSS-HG--LSNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRLR  176 (352)
Q Consensus       105 ~~~l~~l-~~-~~~~~~L~~L~l~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~l~  176 (352)
                      +|.+..+ |. +..+++|++|++++|.+.+. +.  ....+++|++|++++|.+...   ..++++++|++|++++|.+.
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            9999976 43 88999999999999999863 22  245689999999999998773   46899999999999999886


Q ss_pred             Cc--ccccCC--CCCcEEEccCCcccee---cCCCCCC------CCEEEcCCCcCCCC-c-C------------------
Q 018662          177 VM--ENLQNL--TNLQELWLGRNRIKVV---NLCGLKC------IKKISLQSNRLTSM-K-G------------------  223 (352)
Q Consensus       177 ~~--~~~~~~--~~L~~L~l~~~~l~~~---~~~~~~~------L~~L~l~~~~~~~~-~-~------------------  223 (352)
                      ..  ..+..+  ++|+.|+++.|.+...   .+..+++      |+.|++++|.+... + .                  
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            33  445555  7899999999987765   3333333      99999999865432 0 0                  


Q ss_pred             ------------------ccc--cccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEc
Q 018662          224 ------------------FEE--CIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWL  279 (352)
Q Consensus       224 ------------------~~~--~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l  279 (352)
                                        +..  .++|+.|++++|.+..+  ..+..+++|+.|++++|+++++  ..+..+++|++|++
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  321 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL  321 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred             cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence                              111  36899999999998875  3478889999999999999887  56888999999999


Q ss_pred             CCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeeecc
Q 018662          280 NDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDY  350 (352)
Q Consensus       280 ~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (352)
                      ++|.++.+.   ...+..+++|+.|++++|.    +..++...|..          +.++.++++++|...
T Consensus       322 s~N~l~~~~---~~~~~~l~~L~~L~L~~N~----i~~~~~~~~~~----------l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          322 SYNLLGELY---SSNFYGLPKVAYIDLQKNH----IAIIQDQTFKF----------LEKLQTLDLRDNALT  375 (844)
T ss_dssp             ESCCCSCCC---SCSCSSCTTCCEEECCSCC----CCCCCSSCSCS----------CCCCCEEEEETCCSC
T ss_pred             CCCCCCccC---HHHhcCCCCCCEEECCCCC----CCccChhhhcC----------CCCCCEEECCCCCCC
Confidence            999998653   3456788999999999995    45556665643          567777777777643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=212.52  Aligned_cols=265  Identities=20%  Similarity=0.249  Sum_probs=193.3

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      .....+++++.++.+|. .++++|++|++++|.++.++. .+.++++|++|++++|.+++..   ...+..+++|++|++
T Consensus        32 ~~~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE---EDSFSSLGSLEHLDL  107 (353)
T ss_dssp             TTSEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEEC
T ss_pred             CCeEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC---HhhcCCCCCCCEEEC
Confidence            34558899999999886 666899999999999998877 5899999999999999988753   345677899999999


Q ss_pred             cCCCCCCCCC--CccccCCcEEEccCCCcccccC--CcccccCcceEEccCCc-CCCcccccCCCCCcEEEcCCCccCCc
Q 018662          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG--LSNVTDTLKELYVSKNE-VPKMEEIEHFHDLQILEFGSNRLRVM  178 (352)
Q Consensus       104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~  178 (352)
                      ++|.+..++.  +..+++|++|++++|.+..++.  ....+++|++|++++|. +...                    ..
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--------------------~~  167 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI--------------------QR  167 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--------------------CT
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc--------------------CH
Confidence            9999998876  6788999999999998887655  33446667777776663 3221                    11


Q ss_pred             ccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCcC--ccccccCcEEECCCCCCCCCC-----CCCC
Q 018662          179 ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKME-----GLST  248 (352)
Q Consensus       179 ~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~-----~~~~  248 (352)
                      ..+..+++|+.|++++|.+...   .+..+++|++|++++|.+...+.  +..+++|+.|++++|.+++++     ....
T Consensus       168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~  247 (353)
T 2z80_A          168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET  247 (353)
T ss_dssp             TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred             HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence            2234444455555555544443   34455666666666666655542  334677777777777776642     2334


Q ss_pred             CCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662          249 LVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQII  316 (352)
Q Consensus       249 ~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  316 (352)
                      ...++.++++++.+.+.      +.+..+++|++|++++|.++.++.   ..+..+++|++|++++|++.|++.
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD---GIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH---HHHhcCCCCCEEEeeCCCccCcCC
Confidence            56788888988888653      456788999999999999997763   445778999999999999999883

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.6e-26  Score=211.61  Aligned_cols=244  Identities=25%  Similarity=0.334  Sum_probs=171.9

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      ..+.+++++..++.+|. .+++++++|++++|.++.++ ..|.++++|++|++++|.++..   ....|..+++|++|++
T Consensus        55 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI---EVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc---ChhhccCcccCCEEEC
Confidence            34567777777777764 55677788888888777664 3477777788888877777764   2234556777777777


Q ss_pred             cCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCc-cCCccc
Q 018662          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR-LRVMEN  180 (352)
Q Consensus       104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~  180 (352)
                      ++|.+..++.  +..+++|++|++++|.+..++..                     .+..+++|+.|+++++. +..++ 
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------~~~~l~~L~~L~l~~~~~l~~i~-  188 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY---------------------AFNRVPSLMRLDLGELKKLEYIS-  188 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTT---------------------TTTTCTTCCEEECCCCTTCCEEC-
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHh---------------------HHhcCCcccEEeCCCCCCccccC-
Confidence            7777776654  55666777777776666544321                     23334444444444321 11100 


Q ss_pred             ccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcC
Q 018662          181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVS  258 (352)
Q Consensus       181 ~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~  258 (352)
                                        ...+..+++|+.|++++|.++..+.+..+++|+.|++++|.+.++.  .+..+++|+.|+++
T Consensus       189 ------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  250 (452)
T 3zyi_A          189 ------------------EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM  250 (452)
T ss_dssp             ------------------TTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECT
T ss_pred             ------------------hhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeC
Confidence                              0134456677777777777777777778888999999999888753  47788899999999


Q ss_pred             CCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          259 SNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       259 ~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +|+++++  ..+..+++|+.|++++|.++.++   ...+..+++|+.|++++|||.|++
T Consensus       251 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLP---HDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---TTSSTTCTTCCEEECCSSCEECST
T ss_pred             CCcCceECHHHhcCCCCCCEEECCCCcCCccC---hHHhccccCCCEEEccCCCcCCCC
Confidence            9999877  56788899999999999999766   345677899999999999999998

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=3.7e-26  Score=220.19  Aligned_cols=146  Identities=23%  Similarity=0.310  Sum_probs=126.0

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  104 (352)
                      -+..++++.+++.+|. .+|+++++|++++|.|+++++ .|.++++|++|++++|.++.+   +...|..+++|++|+++
T Consensus        33 ~~~~~c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i---~~~~f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           33 NITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILT  108 (635)
T ss_dssp             TTEEECTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc---ChhHhcCCCCCCEEEcc
Confidence            4567899999999986 678999999999999999986 599999999999999999886   33467889999999999


Q ss_pred             CCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCC---cccccCCCCCcEEEcCCCcc
Q 018662          105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK---MEEIEHFHDLQILEFGSNRL  175 (352)
Q Consensus       105 ~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~~l  175 (352)
                      +|.++.+|.  +..+++|++|++++|.+..+++. +..+++|++|++++|.+..   +..+..+++|++|++++|.+
T Consensus       109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            999999886  78899999999999999988764 4558999999999998875   34567788888888877754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2e-24  Score=205.69  Aligned_cols=239  Identities=26%  Similarity=0.307  Sum_probs=209.0

Q ss_pred             ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      ++++.|++++|.++.++.  .+++|++|++++|.++++|.   .+++|++|++++|.++...    .   .+++|+.|++
T Consensus        61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~----~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLP----A---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCC----C---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCC----C---CCCCcCEEEC
Confidence            789999999999999987  68999999999999999987   7899999999999998742    1   4688999999


Q ss_pred             cCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccC
Q 018662          104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN  183 (352)
Q Consensus       104 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  183 (352)
                      ++|.+..+|.  .+++|++|++++|.+..++.   ...+|+.|++++|.+..++  ..+++|+.|++++|.+..++.  .
T Consensus       129 ~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~--~  199 (622)
T 3g06_A          129 FGNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT--L  199 (622)
T ss_dssp             CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--C
T ss_pred             CCCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC--c
Confidence            9999999986  35899999999999987654   3578999999999998866  567899999999999876544  3


Q ss_pred             CCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCC
Q 018662          184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT  263 (352)
Q Consensus       184 ~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~  263 (352)
                      .++|+.|++++|.+.... ..+++|+.|++++|.++.+|  ..+++|+.|++++|.++.++.  .+++|+.|++++|+++
T Consensus       200 ~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          200 PSELYKLWAYNNRLTSLP-ALPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             CTTCCEEECCSSCCSSCC-CCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC
T ss_pred             cchhhEEECcCCcccccC-CCCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC
Confidence            578999999999988763 23589999999999999887  567899999999999999887  6789999999999999


Q ss_pred             Cc-ccccCCCCCCeEEcCCCCCcchH
Q 018662          264 LV-DDIQNLSRLEDLWLNDNQIESLE  288 (352)
Q Consensus       264 ~~-~~~~~~~~L~~L~l~~n~i~~~~  288 (352)
                      .+ +.+..+++|+.|++++|+++...
T Consensus       275 ~lp~~l~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          275 RLPESLIHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred             cCCHHHhhccccCEEEecCCCCCCcC
Confidence            88 56889999999999999999643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.2e-25  Score=195.77  Aligned_cols=239  Identities=22%  Similarity=0.262  Sum_probs=152.4

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  104 (352)
                      -+.++++++.++.+|. .+++++++|++++|.++.+|.. +.++++|++|++++|.++.... ....+..+++|++|+++
T Consensus         9 ~~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC-CSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE-EEHHHHSCSCCCEEECC
T ss_pred             CCEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC-cccccccccccCEEECC
Confidence            4678999999999886 6678999999999999999876 7899999999999998875321 12344568899999999


Q ss_pred             CCCCCCCCC-CccccCCcEEEccCCCcccccC--CcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccc
Q 018662          105 DNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG--LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENL  181 (352)
Q Consensus       105 ~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  181 (352)
                      +|.+..++. +..+++|++|++++|.+.....  ....+++|++|++++|.+...                    ....+
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~  146 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--------------------FNGIF  146 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC--------------------STTTT
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc--------------------chhhc
Confidence            998887765 6778888888888887766543  222244444444444433221                    11223


Q ss_pred             cCCCCCcEEEccCCccce--e--cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC--CCCCCCCc
Q 018662          182 QNLTNLQELWLGRNRIKV--V--NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG--LSTLVNLH  253 (352)
Q Consensus       182 ~~~~~L~~L~l~~~~l~~--~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~  253 (352)
                      ..+++|+.|++++|.+..  .  .+..+++|++|++++|.++..+  .+..+++|+.|++++|.+.+++.  +..+++|+
T Consensus       147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  226 (306)
T 2z66_A          147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  226 (306)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred             ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence            444555555555554433  1  3444555555555555555441  34455666666666666655432  44556666


Q ss_pred             EEEcCCCcCCCc--ccccCC-CCCCeEEcCCCCCcc
Q 018662          254 VLDVSSNKLTLV--DDIQNL-SRLEDLWLNDNQIES  286 (352)
Q Consensus       254 ~L~l~~n~l~~~--~~~~~~-~~L~~L~l~~n~i~~  286 (352)
                      +|++++|++++.  ..+..+ ++|++|++++|+++.
T Consensus       227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             EeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            666666666554  334444 356666666666553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.2e-26  Score=203.14  Aligned_cols=233  Identities=19%  Similarity=0.242  Sum_probs=137.4

Q ss_pred             cCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceE
Q 018662           67 HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL  146 (352)
Q Consensus        67 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  146 (352)
                      .+++|++|++++|.++..   ....+..+++|++|++++|.+..++++..+++|++|++++|.+.+++.    .++|++|
T Consensus        32 ~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQI---SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCC---CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred             cCCCCCEEECcCCccCcC---CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----CCCcCEE
Confidence            334444444444444442   112333444444444444444433334444445555555444443321    2445555


Q ss_pred             EccCCcCCCcccccCCCCCcEEEcCCCccCCc--ccccCCCCCcEEEccCCcccee---cC-CCCCCCCEEEcCCCcCCC
Q 018662          147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NL-CGLKCIKKISLQSNRLTS  220 (352)
Q Consensus       147 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~l~~~---~~-~~~~~L~~L~l~~~~~~~  220 (352)
                      ++++|.+.... ...+++|++|++++|.+...  ..+..+++|+.|++++|.+...   .+ ..+++|+.|++++|.++.
T Consensus       105 ~l~~n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          105 HAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             ECCSSCCSEEE-ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             ECCCCccCCcC-ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            55555444421 12245566666666655433  2345566666777766666654   22 245777777777777777


Q ss_pred             CcCccccccCcEEECCCCCCCCCC-CCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccc
Q 018662          221 MKGFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR  298 (352)
Q Consensus       221 ~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~  298 (352)
                      .+....+++|+.|++++|.+++++ .+..+++|++|++++|+++.+ ..+..+++|+.|++++|+++.  +....++..+
T Consensus       184 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~--~~~~~~~~~~  261 (317)
T 3o53_A          184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC--GTLRDFFSKN  261 (317)
T ss_dssp             EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBH--HHHHHHHHTC
T ss_pred             cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccC--cCHHHHHhcc
Confidence            665556788888888888887753 466778888888888888876 456777888888888888873  2334555667


Q ss_pred             cCccEeeccCC
Q 018662          299 ETLTTIYLENN  309 (352)
Q Consensus       299 ~~L~~L~l~~n  309 (352)
                      ++|+.++++++
T Consensus       262 ~~L~~l~l~~~  272 (317)
T 3o53_A          262 QRVQTVAKQTV  272 (317)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccceEEECCCc
Confidence            78888877744

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=3e-25  Score=195.41  Aligned_cols=239  Identities=19%  Similarity=0.235  Sum_probs=165.7

Q ss_pred             CcccEEEcCCCCCC---cchhhhhcCCCCcEEeccC-CccCccccccccccccCCCCcEEEccCCCCC-CCCC-CccccC
Q 018662           46 TNLTELDLTANRLT---SLDSRISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALAGLEELILRDNKLM-KIPD-VSIFKK  119 (352)
Q Consensus        46 ~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~-~~~~~~  119 (352)
                      .++++|+++++.+.   .+|..+.++++|++|++++ |.+.+..   +..+..+++|++|++++|.+. .+|. +..+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~---p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI---PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC---CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC---ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            57888999998887   4777888899999999985 7777653   335667888888888888887 4555 777888


Q ss_pred             CcEEEccCCCcccc-cCCcccccCcceEEccCCcCCC--cccccCCC-CCcEEEcCCCccCCcccccCCCCCcEEEccCC
Q 018662          120 LSVFDVSFNEITSS-HGLSNVTDTLKELYVSKNEVPK--MEEIEHFH-DLQILEFGSNRLRVMENLQNLTNLQELWLGRN  195 (352)
Q Consensus       120 L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~  195 (352)
                      |++|++++|.+.+. +.....+++|++|++++|.+..  +..+..++ +|+++++++|                      
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N----------------------  184 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN----------------------  184 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS----------------------
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC----------------------
Confidence            88888888887743 3333445566666666665542  23344443 4455555444                      


Q ss_pred             cccee---cCCCCCCCCEEEcCCCcCCCC--cCccccccCcEEECCCCCCCC-CCCCCCCCCCcEEEcCCCcCCCc--cc
Q 018662          196 RIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK-MEGLSTLVNLHVLDVSSNKLTLV--DD  267 (352)
Q Consensus       196 ~l~~~---~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~L~~L~l~~n~l~~~--~~  267 (352)
                      .+...   .+..++ |+.|++++|.+...  ..+..+++|+.|++++|.+.. ++.+..+++|++|++++|++++.  ..
T Consensus       185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  263 (313)
T 1ogq_A          185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG  263 (313)
T ss_dssp             EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred             eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH
Confidence            44322   223333 66666666665543  245667778888888887765 34567778899999999998744  56


Q ss_pred             ccCCCCCCeEEcCCCCCcc-hHHHHHHHhccccCccEeeccCCCccccc
Q 018662          268 IQNLSRLEDLWLNDNQIES-LESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       268 ~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +..+++|++|++++|++++ +|.     ...+++|+.+++++|++.|..
T Consensus       264 l~~l~~L~~L~Ls~N~l~~~ip~-----~~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          264 LTQLKFLHSLNVSFNNLCGEIPQ-----GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCC-----STTGGGSCGGGTCSSSEEEST
T ss_pred             HhcCcCCCEEECcCCcccccCCC-----CccccccChHHhcCCCCccCC
Confidence            7888999999999999883 332     156789999999999976654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=2.2e-24  Score=189.35  Aligned_cols=244  Identities=24%  Similarity=0.284  Sum_probs=172.6

Q ss_pred             cEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCC---C-CccccCCcEEE
Q 018662           49 TELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIP---D-VSIFKKLSVFD  124 (352)
Q Consensus        49 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~---~-~~~~~~L~~L~  124 (352)
                      +.++++++.++.+|..+  .++|++|++++|.++..   +...|..+++|++|++++|.+..+.   . +..+++|++|+
T Consensus        10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSL---PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCcc---CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            45666666666666543  24666666666666543   1123445666666666666655331   1 33445555555


Q ss_pred             ccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc---ccccCCCCCcEEEccCCcccee-
Q 018662          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM---ENLQNLTNLQELWLGRNRIKVV-  200 (352)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~~~l~~~-  200 (352)
                      +++|.+..++.                      .+..+++|++|++++|.+...   ..+..+++|+.|++++|.+... 
T Consensus        85 Ls~n~i~~l~~----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           85 LSFNGVITMSS----------------------NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             CCSCSEEEEEE----------------------EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             CCCCccccChh----------------------hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence            55555443322                      345566666666666665433   3467788899999999887765 


Q ss_pred             --cCCCCCCCCEEEcCCCcCCC--Cc-CccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCCc--ccccCC
Q 018662          201 --NLCGLKCIKKISLQSNRLTS--MK-GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNL  271 (352)
Q Consensus       201 --~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~  271 (352)
                        .+..+++|++|++++|.+..  .+ .+..+++|+.|++++|.++++  ..+..+++|++|++++|.++++  ..+..+
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  222 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL  222 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence              46788999999999999876  33 578899999999999999886  3578899999999999999887  357889


Q ss_pred             CCCCeEEcCCCCCcchHHHHHHHhccc-cCccEeeccCCCccccccccCCccHHH
Q 018662          272 SRLEDLWLNDNQIESLESIVEAVAGSR-ETLTTIYLENNPQNLQIILLPSDKFSQ  325 (352)
Q Consensus       272 ~~L~~L~l~~n~i~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~  325 (352)
                      ++|+.|++++|.++...   ...+..+ ++|+.|++++|++.|++   +..+|..
T Consensus       223 ~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~L~L~~N~~~~~c---~~~~~~~  271 (306)
T 2z66_A          223 NSLQVLDYSLNHIMTSK---KQELQHFPSSLAFLNLTQNDFACTC---EHQSFLQ  271 (306)
T ss_dssp             TTCCEEECTTSCCCBCS---SSSCCCCCTTCCEEECTTCCEECSG---GGHHHHH
T ss_pred             ccCCEeECCCCCCcccC---HHHHHhhhccCCEEEccCCCeeccc---ChHHHHH
Confidence            99999999999998654   2334556 48999999999999987   4344544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=3.5e-24  Score=186.17  Aligned_cols=217  Identities=22%  Similarity=0.289  Sum_probs=132.3

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  104 (352)
                      .+.++++++.++.+|. .+++++++|++++|.++.++. .+..+++|++|++++|.++...   ...+..+++|++|+++
T Consensus        13 ~~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID---AAAFTGLALLEQLDLS   88 (285)
T ss_dssp             SCEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECC
T ss_pred             CeEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC---HhhcCCccCCCEEeCC
Confidence            3778889999988875 667899999999999998775 4888999999999999887753   3356667888888888


Q ss_pred             CCC-CCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccc
Q 018662          105 DNK-LMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENL  181 (352)
Q Consensus       105 ~~~-l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  181 (352)
                      +|. +..+++  +..+++|++|++++|.+....+                     ..+..+++|++|++++|.+...+. 
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~~~~~-  146 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP---------------------GLFRGLAALQYLYLQDNALQALPD-  146 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT---------------------TTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECH---------------------hHhhCCcCCCEEECCCCcccccCH-
Confidence            886 776633  6667777777777766654322                     122333444444444444332111 


Q ss_pred             cCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEc
Q 018662          182 QNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDV  257 (352)
Q Consensus       182 ~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l  257 (352)
                                        ..+..+++|+.|++++|.++..+  .+..+++|+.|++++|.+.++  ..+..+++|++|++
T Consensus       147 ------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  208 (285)
T 1ozn_A          147 ------------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (285)
T ss_dssp             ------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ------------------hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence                              01222333444444444443332  244455555666665555543  23455556666666


Q ss_pred             CCCcCCCc--ccccCCCCCCeEEcCCCCCcc
Q 018662          258 SSNKLTLV--DDIQNLSRLEDLWLNDNQIES  286 (352)
Q Consensus       258 ~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~  286 (352)
                      ++|+++++  ..+..+++|+.|++++|++..
T Consensus       209 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          209 FANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            66666555  235556666666666666553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.1e-24  Score=202.95  Aligned_cols=237  Identities=19%  Similarity=0.252  Sum_probs=150.6

Q ss_pred             CCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEcc
Q 018662           70 NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVS  149 (352)
Q Consensus        70 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  149 (352)
                      +|++|++++|.+++.   .+..|..+++|++|++++|.+...+++..+++|++|++++|.+.+++.    .++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQI---SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCC---CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCC---CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence            455555555444443   112334444455555555444433334445555555555554444332    1455555555


Q ss_pred             CCcCCCcccccCCCCCcEEEcCCCccCCc--ccccCCCCCcEEEccCCcccee---cCC-CCCCCCEEEcCCCcCCCCcC
Q 018662          150 KNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NLC-GLKCIKKISLQSNRLTSMKG  223 (352)
Q Consensus       150 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~l~~~---~~~-~~~~L~~L~l~~~~~~~~~~  223 (352)
                      +|.+..... ..+++|+.|++++|.+...  ..+..+++|+.|++++|.+...   .+. .+++|+.|++++|.++..+.
T Consensus       108 ~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~  186 (487)
T 3oja_A          108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG  186 (487)
T ss_dssp             SSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred             CCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence            555544321 2345566666666666533  2456667777777777776654   232 56788888888888877776


Q ss_pred             ccccccCcEEECCCCCCCCCC-CCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCc
Q 018662          224 FEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETL  301 (352)
Q Consensus       224 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L  301 (352)
                      ...+++|+.|++++|.+++++ .+..+++|+.|++++|.++++ ..+..+++|+.|++++|++..  +.+..++..++.|
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c--~~~~~~~~~l~~L  264 (487)
T 3oja_A          187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC--GTLRDFFSKNQRV  264 (487)
T ss_dssp             CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCH--HHHHHHHTTCHHH
T ss_pred             cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcC--cchHHHHHhCCCC
Confidence            667888889999988888763 467788899999999999887 567788899999999999884  3334556778888


Q ss_pred             cEeecc-------CCCcccccc
Q 018662          302 TTIYLE-------NNPQNLQII  316 (352)
Q Consensus       302 ~~L~l~-------~n~~~~~~~  316 (352)
                      +.++++       .+++.|.+.
T Consensus       265 ~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          265 QTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             HHHHHHHHHHHTSSSSCCCSST
T ss_pred             cEEeccccccccCCCcccccCC
Confidence            888886       777766653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=5.6e-25  Score=193.67  Aligned_cols=220  Identities=20%  Similarity=0.219  Sum_probs=157.3

Q ss_pred             CCCcEEeccCCccCc--cccccccccccCCCCcEEEccC-CCCC-CCCC-CccccCCcEEEccCCCcccccCCcccccCc
Q 018662           69 SNLKKLSLRQNLIDD--AAIEPISRWDALAGLEELILRD-NKLM-KIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTL  143 (352)
Q Consensus        69 ~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~L~~L~l~~-~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  143 (352)
                      .++++|+++++.+.+  ..   +..+..+++|++|++++ |.+. .+|. +..+++|++|++++|.+.+..+        
T Consensus        50 ~~l~~L~L~~~~l~~~~~~---~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--------  118 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPI---PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP--------  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCEEC---CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC--------
T ss_pred             ceEEEEECCCCCccCCccc---ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC--------
Confidence            467777777777765  32   23455677777777774 6555 3444 6667777777777776653221        


Q ss_pred             ceEEccCCcCCCcccccCCCCCcEEEcCCCccC--CcccccCCCCCcEEEccCCcccee---cCCCCC-CCCEEEcCCCc
Q 018662          144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLK-CIKKISLQSNR  217 (352)
Q Consensus       144 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~-~L~~L~l~~~~  217 (352)
                                   ..+..+++|++|++++|.+.  .+..+..+++|++|++++|.+...   .+..++ +|+.|++++|.
T Consensus       119 -------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          119 -------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             -------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             -------------HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                         23444555555555555553  234566677777777777776633   455666 89999999998


Q ss_pred             CCCC-c-CccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcc-hHHHH
Q 018662          218 LTSM-K-GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIES-LESIV  291 (352)
Q Consensus       218 ~~~~-~-~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~-~~~~~  291 (352)
                      +.+. | .+..++ |+.|++++|.+.+.  ..+..+++|+.|++++|.+++. +.+..+++|++|++++|.++. +|   
T Consensus       186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---  261 (313)
T 1ogq_A          186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP---  261 (313)
T ss_dssp             EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC---
T ss_pred             eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC---
Confidence            8744 3 456665 99999999998864  3578899999999999999866 667888999999999999983 33   


Q ss_pred             HHHhccccCccEeeccCCCccccccc
Q 018662          292 EAVAGSRETLTTIYLENNPQNLQIIL  317 (352)
Q Consensus       292 ~~~~~~~~~L~~L~l~~n~~~~~~~~  317 (352)
                       ..+..+++|+.|++++|++.+.++.
T Consensus       262 -~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          262 -QGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             -GGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             -hHHhcCcCCCEEECcCCcccccCCC
Confidence             3467789999999999999888743

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.91  E-value=4e-27  Score=218.65  Aligned_cols=170  Identities=25%  Similarity=0.281  Sum_probs=75.2

Q ss_pred             CcceEEccCCcCCC------cccccCCCCCcEEEcCCCccCCc------cc-ccCCCCCcEEEccCCcccee-------c
Q 018662          142 TLKELYVSKNEVPK------MEEIEHFHDLQILEFGSNRLRVM------EN-LQNLTNLQELWLGRNRIKVV-------N  201 (352)
Q Consensus       142 ~L~~L~l~~~~~~~------~~~~~~~~~L~~L~l~~~~l~~~------~~-~~~~~~L~~L~l~~~~l~~~-------~  201 (352)
                      +|++|++++|.+..      ...+..+++|++|++++|.+...      +. ...+++|+.|++++|.+...       .
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            45555555554443      12233445555555555544311      11 12344555555555544442       2


Q ss_pred             CCCCCCCCEEEcCCCcCCCCc--Cc-----cccccCcEEECCCCCCCCCC------CCCCCCCCcEEEcCCCcCCCc--c
Q 018662          202 LCGLKCIKKISLQSNRLTSMK--GF-----EECIALEELYLSHNGISKME------GLSTLVNLHVLDVSSNKLTLV--D  266 (352)
Q Consensus       202 ~~~~~~L~~L~l~~~~~~~~~--~~-----~~~~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~--~  266 (352)
                      +..+++|++|++++|.+....  .+     ...++|+.|++++|.+++..      .+..+++|++|++++|.+++.  .
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            223455555555555443221  01     11235555555555544321      123345555666655555433  1


Q ss_pred             c----cc-CCCCCCeEEcCCCCCcchH-HHHHHHhccccCccEeeccCCCc
Q 018662          267 D----IQ-NLSRLEDLWLNDNQIESLE-SIVEAVAGSRETLTTIYLENNPQ  311 (352)
Q Consensus       267 ~----~~-~~~~L~~L~l~~n~i~~~~-~~~~~~~~~~~~L~~L~l~~n~~  311 (352)
                      .    +. ..++|++|++++|.+++.. ..+...+..+++|++|++++|++
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence            1    11 1345666666666555311 01122233455666666666643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=1.4e-23  Score=187.93  Aligned_cols=247  Identities=19%  Similarity=0.258  Sum_probs=182.5

Q ss_pred             cccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662           23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (352)
Q Consensus        23 ~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~   99 (352)
                      ++++++|+++++.+++++.  +..+++|++|++++|.++.++. .+.++++|++|++++|.++..   ....+..+++|+
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~  127 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL---SSSWFKPLSSLT  127 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC---CHHHHTTCTTCS
T ss_pred             cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC---CHhHhCCCccCC
Confidence            4689999999999999876  5567999999999999998754 589999999999999999875   233477899999


Q ss_pred             EEEccCCCCCCCCC---CccccCCcEEEccCCC-cccccC-CcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCC
Q 018662          100 ELILRDNKLMKIPD---VSIFKKLSVFDVSFNE-ITSSHG-LSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGS  172 (352)
Q Consensus       100 ~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~  172 (352)
                      +|++++|.+..++.   +..+++|++|++++|. +..+.+ ....+++|++|++++|.+...  ..+..+++|++|++++
T Consensus       128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence            99999999998876   7789999999999994 665543 344578888898888877663  4567777777777777


Q ss_pred             CccCCccc--ccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCC-----CC-
Q 018662          173 NRLRVMEN--LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK-----ME-  244 (352)
Q Consensus       173 ~~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~-  244 (352)
                      |.+...+.  +..+++|+.|++++|.+........                +.....+.++.++++++.+.+     ++ 
T Consensus       208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l----------------~~~~~~~~l~~l~L~~~~l~~~~l~~l~~  271 (353)
T 2z80_A          208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL----------------STGETNSLIKKFTFRNVKITDESLFQVMK  271 (353)
T ss_dssp             SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred             CccccchhhhhhhcccccEEECCCCcccccccccc----------------ccccccchhhccccccccccCcchhhhHH
Confidence            77654332  2345666666666665554321111                111234556666666665554     22 


Q ss_pred             CCCCCCCCcEEEcCCCcCCCcc--cccCCCCCCeEEcCCCCCcchH
Q 018662          245 GLSTLVNLHVLDVSSNKLTLVD--DIQNLSRLEDLWLNDNQIESLE  288 (352)
Q Consensus       245 ~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~i~~~~  288 (352)
                      .+..+++|++|++++|+++.++  .+..+++|++|++++|+++...
T Consensus       272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            3566778888999988888773  3578899999999999988643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=1.7e-22  Score=175.52  Aligned_cols=214  Identities=22%  Similarity=0.319  Sum_probs=151.8

Q ss_pred             cEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEcc
Q 018662           72 KKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVS  149 (352)
Q Consensus        72 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  149 (352)
                      ++++.+++.++...    ..  ..++|++|++++|.+..++.  +..+++|++|++++|.+..+.+              
T Consensus        14 ~~~~c~~~~l~~ip----~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------   73 (285)
T 1ozn_A           14 VTTSCPQQGLQAVP----VG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--------------   73 (285)
T ss_dssp             CEEECCSSCCSSCC----TT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT--------------
T ss_pred             eEEEcCcCCcccCC----cC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH--------------
Confidence            45555555555431    11  13456666666666655443  5555566666666555554322              


Q ss_pred             CCcCCCcccccCCCCCcEEEcCCCc-cCC--cccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc-
Q 018662          150 KNEVPKMEEIEHFHDLQILEFGSNR-LRV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK-  222 (352)
Q Consensus       150 ~~~~~~~~~~~~~~~L~~L~l~~~~-l~~--~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~-  222 (352)
                             ..+..+++|++|++++|. +..  +..+..+++|++|++++|.+...   .+..+++|++|++++|.++..+ 
T Consensus        74 -------~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A           74 -------AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             -------TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             -------hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence                   234445555555555554 432  23455666777777777666555   4667788888899888888775 


Q ss_pred             -CccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhcc
Q 018662          223 -GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGS  297 (352)
Q Consensus       223 -~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~  297 (352)
                       .+..+++|+.|++++|.+++++.  +..+++|++|++++|.++++  ..+..+++|+.|++++|.++.++   ...+..
T Consensus       147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~  223 (285)
T 1ozn_A          147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP---TEALAP  223 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---HHHHTT
T ss_pred             hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC---HHHccc
Confidence             37789999999999999998753  78899999999999999887  67888999999999999999765   345678


Q ss_pred             ccCccEeeccCCCccccc
Q 018662          298 RETLTTIYLENNPQNLQI  315 (352)
Q Consensus       298 ~~~L~~L~l~~n~~~~~~  315 (352)
                      +++|+.|++++|++.|++
T Consensus       224 l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          224 LRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             CTTCCEEECCSSCEECSG
T ss_pred             CcccCEEeccCCCccCCC
Confidence            899999999999999988

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=2.2e-24  Score=189.89  Aligned_cols=238  Identities=21%  Similarity=0.188  Sum_probs=128.9

Q ss_pred             ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCC--cchhhhh-------cCCCCcEEeccCCccCcccccccccccc
Q 018662           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT--SLDSRIS-------HLSNLKKLSLRQNLIDDAAIEPISRWDA   94 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~--~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~   94 (352)
                      ++++.++++++.+ .+|. .++..+++|++++|.+.  .++..+.       ++++|++|++++|.+++..+..+. +..
T Consensus        43 ~~L~~l~l~~n~l-~~p~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~  119 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLG-QFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL-EAT  119 (312)
T ss_dssp             EECTTHHHHCCTT-CCCH-HHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS-SCC
T ss_pred             CCceeEeeccccc-ccHH-HHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH-Hhc
Confidence            3455555555555 2221 22233555555555543  2333222       345555555555555443221110 134


Q ss_pred             CCCCcEEEccCCCCCCCCC-Cccc-----cCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEE
Q 018662           95 LAGLEELILRDNKLMKIPD-VSIF-----KKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQIL  168 (352)
Q Consensus        95 l~~L~~L~l~~~~l~~l~~-~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L  168 (352)
                      +++|++|++++|.+..+|. +..+     ++|++|++++|.+....+                     ..++.+++|++|
T Consensus       120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~---------------------~~~~~l~~L~~L  178 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC---------------------EQVRVFPALSTL  178 (312)
T ss_dssp             SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT---------------------TTCCCCSSCCEE
T ss_pred             CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH---------------------HHhccCCCCCEE
Confidence            4555555555555544433 2222     444444444444444331                     234455555555


Q ss_pred             EcCCCccCC----cccc--cCCCCCcEEEccCCcccee------cCCCCCCCCEEEcCCCcCCCCc---CccccccCcEE
Q 018662          169 EFGSNRLRV----MENL--QNLTNLQELWLGRNRIKVV------NLCGLKCIKKISLQSNRLTSMK---GFEECIALEEL  233 (352)
Q Consensus       169 ~l~~~~l~~----~~~~--~~~~~L~~L~l~~~~l~~~------~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L  233 (352)
                      ++++|++..    +..+  ..+++|++|++++|.+...      .+..+++|+.|++++|.+.+.+   .+..+++|+.|
T Consensus       179 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  258 (312)
T 1wwl_A          179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL  258 (312)
T ss_dssp             ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred             ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence            555555321    1222  5556666666666665532      2235567777777777776642   34456778888


Q ss_pred             ECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcc
Q 018662          234 YLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIES  286 (352)
Q Consensus       234 ~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~  286 (352)
                      ++++|.++.++.... ++|++|++++|++++++.+..+++|++|++++|++++
T Consensus       259 ~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          259 NLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             ECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred             ECCCCccChhhhhcc-CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence            888888777654322 6788888888888777557777888888888888774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=3e-25  Score=206.01  Aligned_cols=325  Identities=20%  Similarity=0.191  Sum_probs=218.4

Q ss_pred             ccccccccccCceeecCCCCCcCC-----C-CCCCCCcccEEEcCCCCCCcc-hhh-hhcCC----CCcEEeccCCccCc
Q 018662           16 PDQAVEIDLSNTVLDLTSFQLHDL-----D-SVEFPTNLTELDLTANRLTSL-DSR-ISHLS----NLKKLSLRQNLIDD   83 (352)
Q Consensus        16 ~~~~~~~~~~l~~L~l~~~~l~~~-----~-~~~~~~~L~~L~l~~~~l~~l-~~~-~~~l~----~L~~L~l~~~~~~~   83 (352)
                      ..+++...+++++|+++++.+++.     + .+..+++|++|++++|.+... +.. ...++    +|++|++++|.++.
T Consensus        20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~   99 (461)
T 1z7x_W           20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   99 (461)
T ss_dssp             HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence            344456667888888888887743     1 133457888888888887742 222 33455    68888888888775


Q ss_pred             cccc-cccccccCCCCcEEEccCCCCCCC--CC-----CccccCCcEEEccCCCccccc-----CCcccccCcceEEccC
Q 018662           84 AAIE-PISRWDALAGLEELILRDNKLMKI--PD-----VSIFKKLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSK  150 (352)
Q Consensus        84 ~~~~-~~~~~~~l~~L~~L~l~~~~l~~l--~~-----~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~  150 (352)
                      .... ....+..+++|++|++++|.+...  ..     ....++|++|++++|.+....     .....+++|++|++++
T Consensus       100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  179 (461)
T 1z7x_W          100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN  179 (461)
T ss_dssp             GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence            3211 133456778888888888877631  11     122457888888888776532     2223367889999988


Q ss_pred             CcCCCc--cccc-----CCCCCcEEEcCCCccCC------cccccCCCCCcEEEccCCcccee--------cCCCCCCCC
Q 018662          151 NEVPKM--EEIE-----HFHDLQILEFGSNRLRV------MENLQNLTNLQELWLGRNRIKVV--------NLCGLKCIK  209 (352)
Q Consensus       151 ~~~~~~--~~~~-----~~~~L~~L~l~~~~l~~------~~~~~~~~~L~~L~l~~~~l~~~--------~~~~~~~L~  209 (352)
                      |.+...  ..+.     ..++|++|++++|.+..      ...+..+++|++|++++|.+...        ....+++|+
T Consensus       180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~  259 (461)
T 1z7x_W          180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR  259 (461)
T ss_dssp             SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred             CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCce
Confidence            886652  2221     35689999999988764      33456788999999999987654        223578999


Q ss_pred             EEEcCCCcCCCC-----c-CccccccCcEEECCCCCCCCCC------C-CCCCCCCcEEEcCCCcCCCc------ccccC
Q 018662          210 KISLQSNRLTSM-----K-GFEECIALEELYLSHNGISKME------G-LSTLVNLHVLDVSSNKLTLV------DDIQN  270 (352)
Q Consensus       210 ~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~n~l~~~~------~-~~~~~~L~~L~l~~n~l~~~------~~~~~  270 (352)
                      +|++++|.++..     + .+..+++|++|++++|.+.+..      . ....++|++|++++|.+++.      ..+..
T Consensus       260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  339 (461)
T 1z7x_W          260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ  339 (461)
T ss_dssp             EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred             EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence            999999988763     2 3556889999999999886421      1 12346899999999998764      34566


Q ss_pred             CCCCCeEEcCCCCCcchH-HHHHHHhc-cccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeee
Q 018662          271 LSRLEDLWLNDNQIESLE-SIVEAVAG-SRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQ  348 (352)
Q Consensus       271 ~~~L~~L~l~~n~i~~~~-~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (352)
                      +++|++|++++|.+++.. ......+. .+++|++|++++|.++...       ...+...+   .-++++.++++++|.
T Consensus       340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~-------~~~l~~~l---~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS-------CSSLAATL---LANHSLRELDLSNNC  409 (461)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH-------HHHHHHHH---HHCCCCCEEECCSSS
T ss_pred             CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh-------HHHHHHHH---HhCCCccEEECCCCC
Confidence            789999999999988643 12222222 3679999999999654321       11222222   237788888888887


Q ss_pred             cc
Q 018662          349 DY  350 (352)
Q Consensus       349 ~~  350 (352)
                      ..
T Consensus       410 i~  411 (461)
T 1z7x_W          410 LG  411 (461)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=5.3e-24  Score=187.87  Aligned_cols=233  Identities=21%  Similarity=0.255  Sum_probs=191.9

Q ss_pred             CcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEc
Q 018662           71 LKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYV  148 (352)
Q Consensus        71 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  148 (352)
                      ++..+++.+.+...   ....+..+++|++|++++|.+..+++  +..+++|++|++++|.+.+..+ ...+++|++|++
T Consensus        12 l~i~~ls~~~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLKQA---LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHHHH---HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEEC
T ss_pred             eeEeeccccchhhh---HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEEC
Confidence            44455666555442   11223457799999999999998874  8889999999999999987665 555889999999


Q ss_pred             cCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--C
Q 018662          149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--G  223 (352)
Q Consensus       149 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~  223 (352)
                      ++|.+..+.   ..++|++|++++|.+..... ..+++|+.|++++|.+...   .+..+++|+.|++++|.+...+  .
T Consensus        88 s~n~l~~l~---~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           88 NNNYVQELL---VGPSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             CSSEEEEEE---ECTTCCEEECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             cCCcccccc---CCCCcCEEECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            999877543   45899999999999875432 3478899999999998876   5667899999999999998763  3


Q ss_pred             c-cccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCc
Q 018662          224 F-EECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETL  301 (352)
Q Consensus       224 ~-~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L  301 (352)
                      + ..+++|+.|++++|.++.++....+++|++|++++|+++++ +.+..+++|+.|++++|.++.++.    .+..+++|
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~l~~L  239 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK----ALRFSQNL  239 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT----TCCCCTTC
T ss_pred             HhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh----HhhcCCCC
Confidence            3 46899999999999999988777899999999999999988 568889999999999999998764    35778999


Q ss_pred             cEeeccCCCccccc
Q 018662          302 TTIYLENNPQNLQI  315 (352)
Q Consensus       302 ~~L~l~~n~~~~~~  315 (352)
                      +.|++++|++.|..
T Consensus       240 ~~L~l~~N~~~~~~  253 (317)
T 3o53_A          240 EHFDLRGNGFHCGT  253 (317)
T ss_dssp             CEEECTTCCCBHHH
T ss_pred             CEEEccCCCccCcC
Confidence            99999999998654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1.7e-24  Score=190.51  Aligned_cols=239  Identities=18%  Similarity=0.183  Sum_probs=177.7

Q ss_pred             CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccc-------cCCCCcEEEccCCCCC-CCCC-C--
Q 018662           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWD-------ALAGLEELILRDNKLM-KIPD-V--  114 (352)
Q Consensus        46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~l~-~l~~-~--  114 (352)
                      ++|++|++++|.+ .+|..+...  |++|++++|.+....  ....+.       .+++|++|++++|.+. .+|. +  
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~--~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAAR--IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEE--CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCC--cCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            5688888888888 777766554  888888888775431  111111       4778888888888877 3554 3  


Q ss_pred             ccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc--ccccCCCCCcEEEc
Q 018662          115 SIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWL  192 (352)
Q Consensus       115 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l  192 (352)
                      ..+++|++|++++|.+.+.+.....+.                 ...+++|++|++++|.+...  ..+..+++|+.|++
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~-----------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  180 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQ-----------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL  180 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHH-----------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHH-----------------HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence            677888888888887776532211110                 00136677777777777533  46889999999999


Q ss_pred             cCCcccee-------cCCCCCCCCEEEcCCCcCCCCcC-----ccccccCcEEECCCCCCCCC---CCCCCCCCCcEEEc
Q 018662          193 GRNRIKVV-------NLCGLKCIKKISLQSNRLTSMKG-----FEECIALEELYLSHNGISKM---EGLSTLVNLHVLDV  257 (352)
Q Consensus       193 ~~~~l~~~-------~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l  257 (352)
                      ++|.+...       .+..+++|++|++++|.++..+.     +..+++|+.|++++|.+.+.   +.+..+++|++|++
T Consensus       181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  260 (312)
T 1wwl_A          181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL  260 (312)
T ss_dssp             CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred             CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence            99986542       33789999999999999986532     34678999999999999884   34566799999999


Q ss_pred             CCCcCCCcc-cccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccc
Q 018662          258 SSNKLTLVD-DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL  313 (352)
Q Consensus       258 ~~n~l~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  313 (352)
                      ++|+++.++ .+.  ++|++|++++|+|+++|.     +..+++|++|++++|++++
T Consensus       261 s~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-----~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          261 SFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-----PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-----TTTSCEEEEEECTTCTTTC
T ss_pred             CCCccChhhhhcc--CCceEEECCCCCCCCChh-----HhhCCCCCEEeccCCCCCC
Confidence            999999873 333  899999999999998753     5678999999999998765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=3.3e-23  Score=181.93  Aligned_cols=193  Identities=20%  Similarity=0.314  Sum_probs=100.4

Q ss_pred             hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcc
Q 018662           65 ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLK  144 (352)
Q Consensus        65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~  144 (352)
                      +..+++|++|+++++.++..     +.+..+++|++|++++|.+..++.+..+++|++|++++|.+..+. ....+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-----~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccCc-----hhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence            34566677777777666542     235556667777777766666655666666666666666665543 223345556


Q ss_pred             eEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcC
Q 018662          145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKG  223 (352)
Q Consensus       145 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~  223 (352)
                      +|++++|.+..+..+..+++|++|++++|.+...+.+..+++|+.|++++|.+... .+..+++|+.|++++|.++..+.
T Consensus       111 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             EEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh
Confidence            66665555555444555555555555555554444444444455555444444433 23344444444444444444433


Q ss_pred             ccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCC
Q 018662          224 FEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT  263 (352)
Q Consensus       224 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~  263 (352)
                      +..+++|++|++++|.+.+++.+..+++|+.|++++|+++
T Consensus       191 l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred             hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence            3444444444444444444333344444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=3.4e-22  Score=184.29  Aligned_cols=215  Identities=24%  Similarity=0.353  Sum_probs=169.8

Q ss_pred             cccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662           23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (352)
Q Consensus        23 ~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~   99 (352)
                      +++++.|++++++++.++.  +..+++|++|++++|.+..++. .|.++++|++|++++|.++..   ....|..+++|+
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~  139 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI---PNGAFVYLSKLK  139 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC---CTTTSCSCSSCC
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee---CHhHhhccccCc
Confidence            4679999999999998864  4557999999999999998774 589999999999999999875   233577899999


Q ss_pred             EEEccCCCCCCCCC--CccccCCcEEEccCCC-cccccC-CcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCcc
Q 018662          100 ELILRDNKLMKIPD--VSIFKKLSVFDVSFNE-ITSSHG-LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL  175 (352)
Q Consensus       100 ~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l  175 (352)
                      +|++++|.+..++.  +..+++|++|++++|. +..+.. .+..+++|++|++++|.+..++.+..+++|+.|++++|.+
T Consensus       140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred             eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence            99999999998876  8889999999999854 444443 3444788888888888888777777888888888888877


Q ss_pred             CC--cccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCC
Q 018662          176 RV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGI  240 (352)
Q Consensus       176 ~~--~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l  240 (352)
                      ..  +..+..+++|+.|++++|.+...   .+..+++|+.|++++|.++..+  .+..+++|+.|++++|.+
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            53  34567777888888888777766   4566777777777777777664  355677777777777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=1e-22  Score=178.69  Aligned_cols=211  Identities=22%  Similarity=0.306  Sum_probs=158.8

Q ss_pred             cEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCC
Q 018662           72 KKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKN  151 (352)
Q Consensus        72 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  151 (352)
                      ..+.+..+.+.+.     .....+++|++|++++|.+..++.+..+++|++|++++|.+..+.+ ...+++|++|++++|
T Consensus        22 ~~~~l~~~~~~~~-----~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n   95 (308)
T 1h6u_A           22 IKIAAGKSNVTDT-----VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN   95 (308)
T ss_dssp             HHHHTTCSSTTSE-----ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCce-----ecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC
Confidence            3345555555542     2344578999999999999988888889999999999999888766 556788999999998


Q ss_pred             cCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCccccccC
Q 018662          152 EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIAL  230 (352)
Q Consensus       152 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L  230 (352)
                      .+..++.+..+++|++|++++|.+..++.+..+++|+.|++++|.+... .+..+++|+.|++++|.++..+.+..+++|
T Consensus        96 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L  175 (308)
T 1h6u_A           96 PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL  175 (308)
T ss_dssp             CCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred             cCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCC
Confidence            8888777888888888888888887766677778888888877777665 456667777777777777766556667777


Q ss_pred             cEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchH
Q 018662          231 EELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLE  288 (352)
Q Consensus       231 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~  288 (352)
                      +.|++++|.+++++.+..+++|++|++++|+++++..+..+++|+.|++++|+++..+
T Consensus       176 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          176 TTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCC
T ss_pred             CEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCC
Confidence            7777777777776666667777777777777776655666777777777777776543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=3.5e-22  Score=184.86  Aligned_cols=217  Identities=23%  Similarity=0.329  Sum_probs=170.8

Q ss_pred             ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCC
Q 018662           22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL   98 (352)
Q Consensus        22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L   98 (352)
                      .+++++.|++++++++++++  +..+++|++|++++|.++.++. .|.++++|++|++++|.++..   ....|..+++|
T Consensus        73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L  149 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI---PSGAFEYLSKL  149 (452)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC---CTTTSSSCTTC
T ss_pred             CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc---ChhhhcccCCC
Confidence            34689999999999998854  4557999999999999998764 589999999999999999875   33456789999


Q ss_pred             cEEEccCCCCCCCCC--CccccCCcEEEccCCC-cccccC-CcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCc
Q 018662           99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNE-ITSSHG-LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR  174 (352)
Q Consensus        99 ~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  174 (352)
                      ++|++++|.+..++.  +..+++|++|++++|. +..+.. .+..+++|++|++++|.+..++.+..+++|+.|++++|.
T Consensus       150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred             CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence            999999999998876  8889999999999854 444443 234477888888888888887777788888888888887


Q ss_pred             cCC--cccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCC
Q 018662          175 LRV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGIS  241 (352)
Q Consensus       175 l~~--~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~  241 (352)
                      +..  +..+..+++|+.|++++|.+...   .+..+++|+.|++++|.++..+  .+..+++|+.|++++|.+.
T Consensus       230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            753  34577777888888888777666   4566777777777777777664  3556777777777777543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=1.8e-22  Score=178.77  Aligned_cols=227  Identities=17%  Similarity=0.191  Sum_probs=157.2

Q ss_pred             CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcEEE
Q 018662           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFD  124 (352)
Q Consensus        46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~  124 (352)
                      +++++|++++|.+..+|..+.++++|++|++++|.++.    .+..+..+++|++|++++|.+..+|. +..+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~----lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME----LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC----CCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc----hhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence            67888888888888888777778888888888888774    23345677888888888888887775 77788888888


Q ss_pred             ccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc-ccccCCCCCcEEEccCCcccee--c
Q 018662          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQELWLGRNRIKVV--N  201 (352)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~l~~~--~  201 (352)
                      +++|.+.+..+...     ....+       ...+..+++|++|++++|.+..+ ..+..+++|+.|++++|.+...  .
T Consensus       157 L~~n~~~~~~p~~~-----~~~~~-------~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~  224 (328)
T 4fcg_A          157 IRACPELTELPEPL-----ASTDA-------SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA  224 (328)
T ss_dssp             EEEETTCCCCCSCS-----EEEC--------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred             CCCCCCccccChhH-----hhccc-------hhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh
Confidence            88865544322111     11000       11234566666666666666432 4466667777777777766655  4


Q ss_pred             CCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC-CC-CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCC
Q 018662          202 LCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK-ME-GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLE  275 (352)
Q Consensus       202 ~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~  275 (352)
                      +..+++|+.|++++|.+.+. | .+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|++.+.  +.+..+++|+
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence            56677788888887766544 3 46778888888888876654 43 467788899999998887554  6788889999


Q ss_pred             eEEcCCCCCcchH
Q 018662          276 DLWLNDNQIESLE  288 (352)
Q Consensus       276 ~L~l~~n~i~~~~  288 (352)
                      .+++..+.+..++
T Consensus       305 ~l~l~~~~~~~l~  317 (328)
T 4fcg_A          305 IILVPPHLQAQLD  317 (328)
T ss_dssp             EEECCGGGSCC--
T ss_pred             EEeCCHHHHHHHh
Confidence            9999888776554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=3.4e-22  Score=176.95  Aligned_cols=215  Identities=17%  Similarity=0.198  Sum_probs=145.1

Q ss_pred             ccCceeecCCCCCcCCCC-CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           24 LSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      ..++.|+++++.++.++. +..+++|++|++++|.++.+|..+.++++|++|++++|.++.    .+..+..+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~----lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA----LPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC----CCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc----CcHHHhcCcCCCEEE
Confidence            679999999999999876 445799999999999999999999999999999999999985    334677899999999


Q ss_pred             ccCCCC-CCCCC-Cc---------cccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc-ccccCCCCCcEEEc
Q 018662          103 LRDNKL-MKIPD-VS---------IFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEF  170 (352)
Q Consensus       103 l~~~~l-~~l~~-~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l  170 (352)
                      +++|.+ ..+|. +.         .+++|++|++++|.+..++.....+++|++|++++|.+..+ ..+..+++|++|++
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL  236 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence            999754 45665 33         37777777777777766554444566666666666666552 33555555555555


Q ss_pred             CCCccC--CcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC-CC-
Q 018662          171 GSNRLR--VMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK-ME-  244 (352)
Q Consensus       171 ~~~~l~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~-~~-  244 (352)
                      ++|.+.  .+..+                     ..+++|+.|++++|.+.+. | .+..+++|+.|++++|.+.+ +| 
T Consensus       237 s~n~~~~~~p~~~---------------------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          237 RGCTALRNYPPIF---------------------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             TTCTTCCBCCCCT---------------------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             cCCcchhhhHHHh---------------------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence            555442  22233                     4445555555555443332 2 34556666666666654433 32 


Q ss_pred             CCCCCCCCcEEEcCCCcCC
Q 018662          245 GLSTLVNLHVLDVSSNKLT  263 (352)
Q Consensus       245 ~~~~~~~L~~L~l~~n~l~  263 (352)
                      .+..+++++.+++..+.+.
T Consensus       296 ~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          296 LIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             GGGGSCTTCEEECCGGGSC
T ss_pred             HHhhccCceEEeCCHHHHH
Confidence            3555566666666554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.6e-22  Score=188.42  Aligned_cols=213  Identities=21%  Similarity=0.274  Sum_probs=183.2

Q ss_pred             cCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcC
Q 018662           94 ALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFG  171 (352)
Q Consensus        94 ~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  171 (352)
                      .+++|++|++++|.+..+++  +..+++|++|++++|.+.+..+ ...+++|++|++++|.+..++   ..++|++|+++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~  107 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA  107 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECc
Confidence            35689999999999998764  8899999999999999987666 556899999999999887643   34899999999


Q ss_pred             CCccCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--Ccc-ccccCcEEECCCCCCCCCCC
Q 018662          172 SNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFE-ECIALEELYLSHNGISKMEG  245 (352)
Q Consensus       172 ~~~l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~-~~~~L~~L~l~~n~l~~~~~  245 (352)
                      +|.+..... ..+++|+.|++++|.+...   .+..+++|+.|++++|.+++.+  .+. .+++|+.|++++|.+++++.
T Consensus       108 ~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~  186 (487)
T 3oja_A          108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG  186 (487)
T ss_dssp             SSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred             CCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence            999875533 3568999999999998876   5677899999999999998763  343 68999999999999999888


Q ss_pred             CCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          246 LSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       246 ~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      ...+++|+.|++++|.++++ +.+..+++|+.|++++|.++.+|.    .+..+++|+.|++++|++.|..
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEECTTCCBCHHH
T ss_pred             cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccch----hhccCCCCCEEEcCCCCCcCcc
Confidence            88899999999999999988 668889999999999999998764    2567899999999999998554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=2.5e-21  Score=168.35  Aligned_cols=198  Identities=22%  Similarity=0.249  Sum_probs=137.0

Q ss_pred             ccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCcccccCCCCCcEEE
Q 018662           91 RWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILE  169 (352)
Q Consensus        91 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  169 (352)
                      .+..++++++++++++.++.+|. ...++++.|++++|.+..+.+ .+..+++|++|++++|.+..+...+         
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------   74 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG---------   74 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCS---------
T ss_pred             cccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCC---------
Confidence            45667788888888888887775 113577788888777766542 2233455555555555554433334         


Q ss_pred             cCCCccCCcccccCCCCCcEEEccCCcccee--cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC
Q 018662          170 FGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG  245 (352)
Q Consensus       170 l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~  245 (352)
                                   .+++|+.|++++|.+...  .+..+++|+.|++++|.++..+  .+..+++|+.|++++|+++.++.
T Consensus        75 -------------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  141 (290)
T 1p9a_G           75 -------------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP  141 (290)
T ss_dssp             -------------CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             -------------CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence                         444555555555544443  3455677777777777777764  36778888888888888887653


Q ss_pred             --CCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          246 --LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       246 --~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                        +..+++|+.|++++|+++.+  ..+..+++|+.|++++|.++.+|..    ...+++|+.|++++|||.|++
T Consensus       142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~----~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG----FFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCCCSEEECCSCCBCCSG
T ss_pred             hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh----hcccccCCeEEeCCCCccCcC
Confidence              56778888888888888877  3467788899999999998877643    234578899999999998887

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=2e-20  Score=161.08  Aligned_cols=197  Identities=23%  Similarity=0.359  Sum_probs=138.8

Q ss_pred             CCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCc
Q 018662           96 AGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR  174 (352)
Q Consensus        96 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  174 (352)
                      ...+.++++++.++.+|. ...+++++|++++|.+..+++ .+..+++|++|++++|.+..+..                
T Consensus        16 ~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~----------------   78 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA----------------   78 (270)
T ss_dssp             TTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT----------------
T ss_pred             CCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh----------------
Confidence            356778888877777775 112567777777777766543 22334555555555555444211                


Q ss_pred             cCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC--CC
Q 018662          175 LRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG--LS  247 (352)
Q Consensus       175 l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~  247 (352)
                          ..+..+++|++|++++|.+...   .+..+++|++|++++|.++..+  .+..+++|++|++++|.+..++.  +.
T Consensus        79 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  154 (270)
T 2o6q_A           79 ----GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD  154 (270)
T ss_dssp             ----TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ----hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence                1134455555555555555444   3455677777777777777764  36778899999999998888764  67


Q ss_pred             CCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662          248 TLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQII  316 (352)
Q Consensus       248 ~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  316 (352)
                      .+++|++|++++|.++++  ..+..+++|+.|++++|.++.++.   ..+..+++|+.|++++|||.|++.
T Consensus       155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE---GAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH---HHhccccCCCEEEecCCCeeCCCc
Confidence            889999999999999887  347788999999999999997763   346778999999999999999884

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=7.6e-21  Score=164.27  Aligned_cols=216  Identities=22%  Similarity=0.307  Sum_probs=149.0

Q ss_pred             ceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccC
Q 018662           27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD  105 (352)
Q Consensus        27 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  105 (352)
                      ..+++.+..++.+|. .+++++++|++++|.++.++. .+.++++|++|++++|.++...   ...+..+++|++|++++
T Consensus        10 ~~~~c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           10 ITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE---DGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             TEEECTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC---TTTTTTCTTCCEEECTT
T ss_pred             ceEEecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC---HHHccCCcCCCEEECCC
Confidence            456778888888876 567889999999999998876 5888999999999999888752   23567788999999999


Q ss_pred             CCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCC---cccccCCCCCcEEEcCCCccCCc-
Q 018662          106 NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK---MEEIEHFHDLQILEFGSNRLRVM-  178 (352)
Q Consensus       106 ~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~~-  178 (352)
                      |.+..++.  +..+++|++|++++|.+...... ...+++|++|++++|.+..   +..+..+++|++|++++|++..+ 
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            98887663  77888899999988888776542 3335666666666666554   23344455555555555544321 


Q ss_pred             -ccccCCCCCcEEEccCCccceecCCCCCCCC-EEEcCCCcCCCCc-CccccccCcEEECCCCCCCCCCC--CCCCCCCc
Q 018662          179 -ENLQNLTNLQELWLGRNRIKVVNLCGLKCIK-KISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEG--LSTLVNLH  253 (352)
Q Consensus       179 -~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~-~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~  253 (352)
                       ..+..++.+                  +.+. .+++++|.+...+ ......+|+.|++++|.+++++.  +..+++|+
T Consensus       166 ~~~~~~l~~L------------------~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  227 (276)
T 2z62_A          166 CTDLRVLHQM------------------PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ  227 (276)
T ss_dssp             GGGGHHHHTC------------------TTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred             HHHhhhhhhc------------------cccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhccccccc
Confidence             112222222                  2222 6677777666653 23334578888888888887653  56788899


Q ss_pred             EEEcCCCcCCC
Q 018662          254 VLDVSSNKLTL  264 (352)
Q Consensus       254 ~L~l~~n~l~~  264 (352)
                      +|++++|++..
T Consensus       228 ~L~l~~N~~~c  238 (276)
T 2z62_A          228 KIWLHTNPWDC  238 (276)
T ss_dssp             EEECCSSCBCC
T ss_pred             EEEccCCcccc
Confidence            99999888753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=6e-21  Score=164.94  Aligned_cols=197  Identities=25%  Similarity=0.331  Sum_probs=127.8

Q ss_pred             CCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCC
Q 018662           96 AGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN  173 (352)
Q Consensus        96 ~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  173 (352)
                      ++|++|++++|.+..++.  +..+++|++|++++|.+..+.+                     ..+..+++|++|++++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED---------------------GAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT---------------------TTTTTCTTCCEEECTTC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH---------------------HHccCCcCCCEEECCCC
Confidence            346666666666665443  5555666666666665554433                     12344444555555554


Q ss_pred             ccCCc--ccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC--c-CccccccCcEEECCCCCCCCCC-
Q 018662          174 RLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--K-GFEECIALEELYLSHNGISKME-  244 (352)
Q Consensus       174 ~l~~~--~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~--~-~~~~~~~L~~L~l~~n~l~~~~-  244 (352)
                      .+...  ..+..+++|+.|++++|.+...   .+..+++|++|++++|.+...  | .+..+++|+.|++++|.+++++ 
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            44321  2345555666666665555444   355667777777777777653  3 4677788888888888887653 


Q ss_pred             -CCCCCCCCc----EEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662          245 -GLSTLVNLH----VLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQII  316 (352)
Q Consensus       245 -~~~~~~~L~----~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  316 (352)
                       .+..+.+|+    +|++++|.++++ .......+|++|++++|.++.++   ...+..+++|+.|++++|++.|++.
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC---TTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC---HhHhcccccccEEEccCCcccccCC
Confidence             233333444    899999998877 33444558999999999999776   3456778999999999999999883

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=2.9e-20  Score=160.09  Aligned_cols=191  Identities=27%  Similarity=0.385  Sum_probs=135.9

Q ss_pred             ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      ...+.++++++.++.+|. .+++++++|++++|.+..++. .|.++++|++|++++|.++..   ....|..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i---~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL---PAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC---CTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee---ChhhhcCCCCCCEEE
Confidence            457899999999999875 567899999999999998876 588999999999999998875   233456789999999


Q ss_pred             ccCCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCccCC
Q 018662          103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRV  177 (352)
Q Consensus       103 l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~  177 (352)
                      +++|.+..++.  +..+++|++|++++|.+..+++. +..+++|++|++++|.+..+.  .+..+++|++|++++|.+..
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            99999998875  67788999999999988876543 334677777777777766632  25566666666666666543


Q ss_pred             cc--cccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcC
Q 018662          178 ME--NLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRL  218 (352)
Q Consensus       178 ~~--~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~  218 (352)
                      ++  .+..+++|+.|++++|.+...   .+..+++|+.|++++|.+
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            32  244455555555555544433   233344444444444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=8.9e-21  Score=163.48  Aligned_cols=210  Identities=20%  Similarity=0.315  Sum_probs=115.1

Q ss_pred             CCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEcc
Q 018662           70 NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVS  149 (352)
Q Consensus        70 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  149 (352)
                      .+..+++.++.+.+.     .....+++|+.|++.++.+..++.+..+++|++|++++|.+.... ....+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~-----~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA-----VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSE-----ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred             HHHHHHhcCcccccc-----cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence            444555555555442     233456777777777777776666666777777777776665432 12223444444444


Q ss_pred             CCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCcC--c
Q 018662          150 KNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--F  224 (352)
Q Consensus       150 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~~--~  224 (352)
                      +|.+.....                    ..+..+++|++|++++|.+...   .+..+++|++|++++|.++..+.  +
T Consensus        94 ~n~l~~~~~--------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  153 (272)
T 3rfs_A           94 GNQLQSLPN--------------------GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF  153 (272)
T ss_dssp             TSCCCCCCT--------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCccCccCh--------------------hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh
Confidence            444333111                    1134444444444444444433   23445555556666555555532  4


Q ss_pred             cccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccC
Q 018662          225 EECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET  300 (352)
Q Consensus       225 ~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~  300 (352)
                      ..+++|+.|++++|.+++++.  +..+++|++|++++|+++++  ..+..+++|+.|++++|++..          .|++
T Consensus       154 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----------~~~~  223 (272)
T 3rfs_A          154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----------TCPG  223 (272)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC----------CTTT
T ss_pred             ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc----------cCcH
Confidence            556666666666666665543  45566666666666666655  235566666666666666552          2455


Q ss_pred             ccEeeccCCCccccc
Q 018662          301 LTTIYLENNPQNLQI  315 (352)
Q Consensus       301 L~~L~l~~n~~~~~~  315 (352)
                      |+.+++.+|.+.|.+
T Consensus       224 l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          224 IRYLSEWINKHSGVV  238 (272)
T ss_dssp             THHHHHHHHHTGGGB
T ss_pred             HHHHHHHHHhCCCcc
Confidence            666666666665555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=3.8e-20  Score=159.54  Aligned_cols=174  Identities=27%  Similarity=0.445  Sum_probs=148.1

Q ss_pred             ccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCC
Q 018662          140 TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSN  216 (352)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~  216 (352)
                      +.+|+.|++.++.+..+..+..+++|++|++++|.+..++.+..+++|++|++++|.+...   .+..+++|++|++++|
T Consensus        40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  119 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN  119 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence            5566777777776666666777888888888888887777788889999999999988876   3678999999999999


Q ss_pred             cCCCCcC--ccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHH
Q 018662          217 RLTSMKG--FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESI  290 (352)
Q Consensus       217 ~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~  290 (352)
                      .++..+.  +..+++|++|++++|.+++++.  +..+++|++|++++|+++++  ..+..+++|+.|++++|.++.++. 
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-  198 (272)
T 3rfs_A          120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-  198 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-
T ss_pred             cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-
Confidence            9998853  7889999999999999998764  67899999999999999988  347889999999999999997663 


Q ss_pred             HHHHhccccCccEeeccCCCcccccc
Q 018662          291 VEAVAGSRETLTTIYLENNPQNLQII  316 (352)
Q Consensus       291 ~~~~~~~~~~L~~L~l~~n~~~~~~~  316 (352)
                        ..+..+++|+.|++++|++.|.+.
T Consensus       199 --~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          199 --GVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             --TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             --HHHhCCcCCCEEEccCCCccccCc
Confidence              456788999999999999999884

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=8e-20  Score=158.82  Aligned_cols=149  Identities=26%  Similarity=0.307  Sum_probs=103.6

Q ss_pred             cccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662           21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (352)
Q Consensus        21 ~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~   99 (352)
                      ...++++.++++++.++.+|. .+++++++|++++|.+..++ ..+.++++|++|++++|.++...     ....+++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~   80 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-----VDGTLPVLG   80 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-----CCSCCTTCC
T ss_pred             cccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-----CCCCCCcCC
Confidence            445678999999999998875 55688999999999998765 45888999999999999887642     225678888


Q ss_pred             EEEccCCCCCCCCC-CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCcc
Q 018662          100 ELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRL  175 (352)
Q Consensus       100 ~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l  175 (352)
                      +|++++|.+..+|. +..+++|++|++++|.+..+++ .+..+++|++|++++|.+..+.  .+..+++|+.|++++|++
T Consensus        81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            88888888888776 6677888888888887776653 2333455555555555554421  133344444444444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=1.2e-21  Score=187.31  Aligned_cols=259  Identities=14%  Similarity=0.085  Sum_probs=128.8

Q ss_pred             CcccEEEcCCCCCC-----cchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCC----CC-CCCc
Q 018662           46 TNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLM----KI-PDVS  115 (352)
Q Consensus        46 ~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~----~l-~~~~  115 (352)
                      ++|++|++++|.++     .++..+.++++|++|++++|.+.+    ....+..+++|++|++......    .. ..+.
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE----LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG----GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH----HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            44555555555443     222233445555555555544443    1122334445555554432111    01 1134


Q ss_pred             cccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc---ccccCCCCCcEEEcCCCccC--Ccc-cccCCCCCcE
Q 018662          116 IFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRLR--VME-NLQNLTNLQE  189 (352)
Q Consensus       116 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~l~--~~~-~~~~~~~L~~  189 (352)
                      .+++|+.++++++....++.....+++|++|++++|.+...   ..+..+++|++|++.. .+.  .+. ....+++|++
T Consensus       268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCE
Confidence            44555555555544333444444466777777777764431   2245666777776662 221  111 1245666777


Q ss_pred             EEccC-----------Ccccee----cCCCCCCCCEEEcCCCcCCCCc--Ccc-ccccCcEEECC----CCCCCCCC---
Q 018662          190 LWLGR-----------NRIKVV----NLCGLKCIKKISLQSNRLTSMK--GFE-ECIALEELYLS----HNGISKME---  244 (352)
Q Consensus       190 L~l~~-----------~~l~~~----~~~~~~~L~~L~l~~~~~~~~~--~~~-~~~~L~~L~l~----~n~l~~~~---  244 (352)
                      |++++           +.+...    ....+++|++|+++.+.++...  .+. .+++|+.|+++    .+.+++.+   
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            77762           333322    1233566777776555554331  222 26667777774    44454431   


Q ss_pred             ----CCCCCCCCcEEEcCCCc--CCCc--cc-ccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCc
Q 018662          245 ----GLSTLVNLHVLDVSSNK--LTLV--DD-IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQ  311 (352)
Q Consensus       245 ----~~~~~~~L~~L~l~~n~--l~~~--~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~  311 (352)
                          .+..+++|++|++++|.  +++.  .. ...+++|+.|++++|.+++  ..+......|++|++|++++|++
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l  500 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD--EGLMEFSRGCPNLQKLEMRGCCF  500 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH--HHHHHHHTCCTTCCEEEEESCCC
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH--HHHHHHHhcCcccCeeeccCCCC
Confidence                02345667777765433  3332  11 2335667777777777664  23344456667777777777754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=5.1e-22  Score=189.94  Aligned_cols=293  Identities=12%  Similarity=0.079  Sum_probs=212.6

Q ss_pred             cccccccCceeecCCCCCcCCCC------CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCcccccccccc
Q 018662           19 AVEIDLSNTVLDLTSFQLHDLDS------VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRW   92 (352)
Q Consensus        19 ~~~~~~~l~~L~l~~~~l~~~~~------~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   92 (352)
                      +....++|++|+++++.++++..      ...+++|++|++++|.+..++..+..+++|++|+++..............+
T Consensus       187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            44455778888888877764432      123689999999999999999889999999999998643221112233456


Q ss_pred             ccCCCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCccccc--CCcccccCcceEEccCCcCCC--cc-cccCCCCCc
Q 018662           93 DALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSH--GLSNVTDTLKELYVSKNEVPK--ME-EIEHFHDLQ  166 (352)
Q Consensus        93 ~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~  166 (352)
                      ..+++|+.|+++++....++. +..+++|++|++++|.+....  .....+++|++|++.+ .+..  +. ....+++|+
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCC
T ss_pred             hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCC
Confidence            778999999999876666776 677899999999999865432  2235588999999983 3332  22 245688999


Q ss_pred             EEEcCC-----------CccCC--ccc-ccCCCCCcEEEccCCcccee---cCC-CCCCCCEEEcC----CCcCCCCc--
Q 018662          167 ILEFGS-----------NRLRV--MEN-LQNLTNLQELWLGRNRIKVV---NLC-GLKCIKKISLQ----SNRLTSMK--  222 (352)
Q Consensus       167 ~L~l~~-----------~~l~~--~~~-~~~~~~L~~L~l~~~~l~~~---~~~-~~~~L~~L~l~----~~~~~~~~--  222 (352)
                      +|++.+           +.+..  +.. ...+++|+.|++..+.+...   .+. .+++|+.|+++    .+.+++.|  
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            999993           33431  122 35689999999988877765   333 38899999996    55666542  


Q ss_pred             -----CccccccCcEEECCCCC--CCC--CCCC-CCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEEcCCCCCcchHH
Q 018662          223 -----GFEECIALEELYLSHNG--ISK--MEGL-STLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLES  289 (352)
Q Consensus       223 -----~~~~~~~L~~L~l~~n~--l~~--~~~~-~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~  289 (352)
                           .+..+++|+.|++++|.  +++  +..+ ..+++|++|++++|.+++.   ..+..+++|++|++++|.+++  .
T Consensus       426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~  503 (592)
T 3ogk_B          426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE--R  503 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH--H
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH--H
Confidence                 14568999999997643  443  1122 3468899999999999764   445788999999999999875  3


Q ss_pred             HHHHHhccccCccEeeccCCCcccc
Q 018662          290 IVEAVAGSRETLTTIYLENNPQNLQ  314 (352)
Q Consensus       290 ~~~~~~~~~~~L~~L~l~~n~~~~~  314 (352)
                      .+......+++|++|++++|+++..
T Consensus       504 ~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          504 AIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHHhcCccCeeECcCCcCCHH
Confidence            3445556789999999999986554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=2.9e-22  Score=181.61  Aligned_cols=111  Identities=20%  Similarity=0.246  Sum_probs=56.5

Q ss_pred             CCCCCEEEcCCCcCCC------Cc-CccccccCcEEECCCCCCCC-----C-CCCCCCCCCcEEEcCCCcCCCc------
Q 018662          205 LKCIKKISLQSNRLTS------MK-GFEECIALEELYLSHNGISK-----M-EGLSTLVNLHVLDVSSNKLTLV------  265 (352)
Q Consensus       205 ~~~L~~L~l~~~~~~~------~~-~~~~~~~L~~L~l~~n~l~~-----~-~~~~~~~~L~~L~l~~n~l~~~------  265 (352)
                      +++|++|++++|.+..      .+ .+..+++|+.|++++|.++.     + ..+..+++|++|++++|.+++.      
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            3444444444444441      12 34455566666666665531     2 1244555666666666666543      


Q ss_pred             ccc--cCCCCCCeEEcCCCCCcch--HHHHHHHhccccCccEeeccCCCccccc
Q 018662          266 DDI--QNLSRLEDLWLNDNQIESL--ESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       266 ~~~--~~~~~L~~L~l~~n~i~~~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      ..+  ..+++|+.|++++|.++..  ......+..++++|++|++++|++++..
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            222  2256666666666666641  0122222244566666666666555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=9.2e-20  Score=154.04  Aligned_cols=197  Identities=17%  Similarity=0.245  Sum_probs=134.0

Q ss_pred             CcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCc-cCccccccccccccCCCCcEEEccC-CCCCCCC
Q 018662           36 LHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNL-IDDAAIEPISRWDALAGLEELILRD-NKLMKIP  112 (352)
Q Consensus        36 l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l~  112 (352)
                      ++.+|.  +++++++|++++|+++.++. .|.++++|++|++++|. ++..   ....|..+++|++|++++ |.+..++
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i---~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL---ESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE---CTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee---CHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            777777  77899999999999998877 58899999999999996 7765   233567789999999998 8888877


Q ss_pred             C--CccccCCcEEEccCCCcccccCCcccccCcc---eEEccCC-cCCCcccccCCCCCcEEEcCCCccCCcccccCCCC
Q 018662          113 D--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLK---ELYVSKN-EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTN  186 (352)
Q Consensus       113 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  186 (352)
                      .  +..+++|++|++++|.+..++. ...+.+|+   +|++++| .+..+..                    ..+..+++
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--------------------~~~~~l~~  156 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV--------------------NAFQGLCN  156 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT--------------------TTTTTTBS
T ss_pred             HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCc--------------------ccccchhc
Confidence            4  6778899999999988877654 33344454   6666555 4443211                    12344445


Q ss_pred             Cc-EEEccCCcccee---cCCCCCCCCEEEcCCCc-CCCCc--Ccccc-ccCcEEECCCCCCCCCCCCCCCCCCcEEEcC
Q 018662          187 LQ-ELWLGRNRIKVV---NLCGLKCIKKISLQSNR-LTSMK--GFEEC-IALEELYLSHNGISKMEGLSTLVNLHVLDVS  258 (352)
Q Consensus       187 L~-~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~-~~~~~--~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~  258 (352)
                      |+ .+++++|.+...   .+.. ++|+.|++++|. ++..+  .+..+ ++|+.|++++|.++.++.. .+++|+.|+++
T Consensus       157 L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~  234 (239)
T 2xwt_C          157 ETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR  234 (239)
T ss_dssp             SEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred             ceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence            55 555555544433   1222 566666666663 65553  35556 7777777777777766543 55677777776


Q ss_pred             CC
Q 018662          259 SN  260 (352)
Q Consensus       259 ~n  260 (352)
                      ++
T Consensus       235 ~~  236 (239)
T 2xwt_C          235 NT  236 (239)
T ss_dssp             TC
T ss_pred             Cc
Confidence            54

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=3.5e-20  Score=162.88  Aligned_cols=101  Identities=20%  Similarity=0.283  Sum_probs=48.0

Q ss_pred             CCCCCEEEcCCCcCCCCcC-----ccccccCcEEECCCCCCCCC--CCCCCC---CCCcEEEcCCCcCCCcc-cccCCCC
Q 018662          205 LKCIKKISLQSNRLTSMKG-----FEECIALEELYLSHNGISKM--EGLSTL---VNLHVLDVSSNKLTLVD-DIQNLSR  273 (352)
Q Consensus       205 ~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~--~~~~~~---~~L~~L~l~~n~l~~~~-~~~~~~~  273 (352)
                      +++|++|++++|.++..+.     +..+++|++|++++|.+.+.  +.+..+   ++|++|++++|+++.++ .+  .++
T Consensus       196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~  273 (310)
T 4glp_A          196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAK  273 (310)
T ss_dssp             SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSC
T ss_pred             CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCC
Confidence            3444444444444443321     23345555555555555443  112222   45555555555555442 12  145


Q ss_pred             CCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcc
Q 018662          274 LEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQN  312 (352)
Q Consensus       274 L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~  312 (352)
                      |++|++++|+|+.++.     ...+++|+.|++++|++.
T Consensus       274 L~~L~Ls~N~l~~~~~-----~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          274 LRVLDLSSNRLNRAPQ-----PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CSCEECCSCCCCSCCC-----TTSCCCCSCEECSSTTTS
T ss_pred             CCEEECCCCcCCCCch-----hhhCCCccEEECcCCCCC
Confidence            5566666666554431     234455666666666543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=5.8e-20  Score=159.82  Aligned_cols=188  Identities=23%  Similarity=0.391  Sum_probs=121.6

Q ss_pred             CCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEcc
Q 018662           70 NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVS  149 (352)
Q Consensus        70 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  149 (352)
                      ++..+.+....+.+.     ..+..+++|+.|++++|.+..++.+..+++|++|++++|.+.+..+ ...+++|++|+++
T Consensus        25 ~~~~~~l~~~~~~~~-----~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~   98 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDA-----VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHHTTCSCTTSE-----ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCcccc-----cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECC
Confidence            344455666665542     2345678899999999999888888888999999999998887765 5557788888888


Q ss_pred             CCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCccccc
Q 018662          150 KNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECI  228 (352)
Q Consensus       150 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~  228 (352)
                      +|.+..++.+..+++|++|++++|.+..++.+..+++|+.|++++|.+... .+..+++|+.|++++|.+...+.+..++
T Consensus        99 ~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~  178 (291)
T 1h6t_A           99 ENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT  178 (291)
T ss_dssp             SSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred             CCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCC
Confidence            888777767777777777877777776666666666666666666655544 3444455555555555544443344444


Q ss_pred             cCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCC
Q 018662          229 ALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT  263 (352)
Q Consensus       229 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~  263 (352)
                      +|+.|++++|.+++++.+..+++|+.|++++|++.
T Consensus       179 ~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          179 KLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             TCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred             ccCEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence            55555555554444444444444455554444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=9e-20  Score=158.61  Aligned_cols=188  Identities=21%  Similarity=0.302  Sum_probs=123.2

Q ss_pred             ccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccC
Q 018662           48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF  127 (352)
Q Consensus        48 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~  127 (352)
                      +..+.+....+..+.. +..+++|++|++++|.+...     +.+..+++|++|++++|.+..++.+..+++|++|++++
T Consensus        26 ~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~-----~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCcccccc-hhhcCcccEEEccCCCcccC-----hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCC
Confidence            3334455555554322 34566777777777766553     23555677777777777777666666677777777777


Q ss_pred             CCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCC
Q 018662          128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLK  206 (352)
Q Consensus       128 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~  206 (352)
                      |.+...+. ...+++|++|++++|.+..++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+... .+..++
T Consensus       100 n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~  178 (291)
T 1h6t_A          100 NKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT  178 (291)
T ss_dssp             SCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred             CcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCC
Confidence            77666443 3445677777777777766666666777777777777766666666777777777777766655 566667


Q ss_pred             CCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCC
Q 018662          207 CIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK  242 (352)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  242 (352)
                      +|+.|++++|.++..+.+..+++|+.|++++|.+..
T Consensus       179 ~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          179 KLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred             ccCEEECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence            777777777777666666667777777777776655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=1.4e-19  Score=159.03  Aligned_cols=218  Identities=16%  Similarity=0.088  Sum_probs=172.3

Q ss_pred             CcccEEEcCCCCCC--cchhh--hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCC-CC-----Cc
Q 018662           46 TNLTELDLTANRLT--SLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKI-PD-----VS  115 (352)
Q Consensus        46 ~~L~~L~l~~~~l~--~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~-----~~  115 (352)
                      ..++.+.+.++.+.  .+...  +..+++|++|++++|.+.+..+..+.. ..+++|++|++++|.+... +.     +.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE-ATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS-CCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh-ccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            35788999998886  23222  345678999999999998764432210 6789999999999998852 21     34


Q ss_pred             cccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCc------ccccCCCCCcEEEcCCCccCCccc-----ccC
Q 018662          116 IFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKM------EEIEHFHDLQILEFGSNRLRVMEN-----LQN  183 (352)
Q Consensus       116 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~l~~~~~-----~~~  183 (352)
                      .+++|++|++++|.+....+ ....+++|++|++++|.+...      ..+..+++|++|++++|.++.++.     +..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            68899999999999987764 444588999999999986541      224688999999999999975543     467


Q ss_pred             CCCCcEEEccCCcccee---cCCCC---CCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEc
Q 018662          184 LTNLQELWLGRNRIKVV---NLCGL---KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDV  257 (352)
Q Consensus       184 ~~~L~~L~l~~~~l~~~---~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l  257 (352)
                      +++|++|++++|.+...   .+..+   ++|++|++++|.++.+|... .++|+.|++++|++++++.+..+++|+.|++
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L  301 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQPDELPEVDNLTL  301 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCCTTSCCCCSCEEC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCchhhhCCCccEEEC
Confidence            89999999999998875   24444   79999999999999886422 3899999999999999888888999999999


Q ss_pred             CCCcCCCc
Q 018662          258 SSNKLTLV  265 (352)
Q Consensus       258 ~~n~l~~~  265 (352)
                      ++|++++.
T Consensus       302 ~~N~l~~~  309 (310)
T 4glp_A          302 DGNPFLVP  309 (310)
T ss_dssp             SSTTTSCC
T ss_pred             cCCCCCCC
Confidence            99998753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=4.7e-19  Score=149.67  Aligned_cols=191  Identities=16%  Similarity=0.186  Sum_probs=140.5

Q ss_pred             ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCC-CCcchh-hhhcCCCCcEEeccC-CccCccccccccccccCC
Q 018662           22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANR-LTSLDS-RISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALA   96 (352)
Q Consensus        22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~   96 (352)
                      .+.++++|+++++++++++.  +..+++|++|++++|+ ++.++. .|.++++|++|++++ |.++..   ....|..++
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i---~~~~f~~l~  105 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI---DPDALKELP  105 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE---CTTSEECCT
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc---CHHHhCCCC
Confidence            45689999999999999876  4457999999999997 998887 588999999999998 898875   334577899


Q ss_pred             CCcEEEccCCCCCCCCCCccccCCc---EEEccCC-CcccccCC-cccccCcc-eEEccCCcCCCcc-cccCCCCCcEEE
Q 018662           97 GLEELILRDNKLMKIPDVSIFKKLS---VFDVSFN-EITSSHGL-SNVTDTLK-ELYVSKNEVPKME-EIEHFHDLQILE  169 (352)
Q Consensus        97 ~L~~L~l~~~~l~~l~~~~~~~~L~---~L~l~~~-~~~~~~~~-~~~~~~L~-~L~l~~~~~~~~~-~~~~~~~L~~L~  169 (352)
                      +|++|++++|.+..+|.+..+++|+   +|++++| .+..+++. +..+++|+ +|++++|.+..++ .....++|+.++
T Consensus       106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~  185 (239)
T 2xwt_C          106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY  185 (239)
T ss_dssp             TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEE
T ss_pred             CCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEE
Confidence            9999999999999999888888888   9999999 88877654 44578888 9999888776532 122225667777


Q ss_pred             cCCCc-cCCc--ccccCC-CCCcEEEccCCccceecCCCCCCCCEEEcCC
Q 018662          170 FGSNR-LRVM--ENLQNL-TNLQELWLGRNRIKVVNLCGLKCIKKISLQS  215 (352)
Q Consensus       170 l~~~~-l~~~--~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~  215 (352)
                      +++|+ +..+  ..+..+ ++|+.|++++|.+.......+++|+.|.+.+
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~  235 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN  235 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTT
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccC
Confidence            76663 5422  224444 5555555555555444333444455554443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=8.2e-20  Score=173.69  Aligned_cols=189  Identities=21%  Similarity=0.300  Sum_probs=120.0

Q ss_pred             cccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEcc
Q 018662           47 NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVS  126 (352)
Q Consensus        47 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~  126 (352)
                      .+..+.+..+.+..+.. +..+++|+.|+++++.+...     +.+..+++|+.|+|++|.+..++++..+++|+.|+++
T Consensus        22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCC-----TTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCC-----hHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECc
Confidence            45555666666665433 45677777888877777653     2456677788888877777777667777777777777


Q ss_pred             CCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCC
Q 018662          127 FNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGL  205 (352)
Q Consensus       127 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~  205 (352)
                      +|.+..++ ....+++|+.|++++|.+..++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+... .+..+
T Consensus        96 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l  174 (605)
T 1m9s_A           96 ENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL  174 (605)
T ss_dssp             SSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             CCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccC
Confidence            77776644 23345667777777776666656666666666666666665555556666666666666655544 44555


Q ss_pred             CCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCC
Q 018662          206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK  242 (352)
Q Consensus       206 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  242 (352)
                      ++|+.|++++|.+...+.+..+++|+.|++++|.+..
T Consensus       175 ~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          175 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             TTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred             CCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence            5566666665555555555555555555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=1.9e-18  Score=154.38  Aligned_cols=231  Identities=19%  Similarity=0.246  Sum_probs=158.3

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcE-EEc
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE-LIL  103 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~-L~l  103 (352)
                      -+.+++++++++.+|. .+++++++|++++|+|+++|.. |.++++|++|++++|.+.+..  +...|..++++++ +.+
T Consensus        11 ~~~v~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i--~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           11 NRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI--EADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TTEEEEESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEE--CTTSBCSCTTCCEEEEE
T ss_pred             CCEEEecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCcc--ChhHhhcchhhhhhhcc
Confidence            4678999999999986 5688999999999999999875 899999999999999986643  2235677888776 556


Q ss_pred             cCCCCCCCCC--CccccCCcEEEccCCCcccccCCcc-cccCcceEEccCC-cCCCc--ccccCC-CCCcEEEcCCCccC
Q 018662          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSN-VTDTLKELYVSKN-EVPKM--EEIEHF-HDLQILEFGSNRLR  176 (352)
Q Consensus       104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~--~~~~~~-~~L~~L~l~~~~l~  176 (352)
                      .+|++..+++  +..+++|++|++++|.+...++... ....+..+++.++ .+..+  ..+..+ ..++.|++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            6789998865  7889999999999999988765433 2456777777553 34432  223333 35677777777775


Q ss_pred             Cc-ccccCCCCCcEEEccC-Ccccee---cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCC-CCCCCCCCCCCC
Q 018662          177 VM-ENLQNLTNLQELWLGR-NRIKVV---NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN-GISKMEGLSTLV  250 (352)
Q Consensus       177 ~~-~~~~~~~~L~~L~l~~-~~l~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~  250 (352)
                      .+ .......+++.+.+.+ |.+...   .+..+++|+.|++++|+++.+|. ..+.+|+.|.+.++ .++.+|.+..++
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~l~~l~  246 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPTLEKLV  246 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCCCTTTCC
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcCCCchhCc
Confidence            33 2334445666776654 444444   34566667777777776666653 22445555554443 455566666666


Q ss_pred             CCcEEEcCCC
Q 018662          251 NLHVLDVSSN  260 (352)
Q Consensus       251 ~L~~L~l~~n  260 (352)
                      +|+.+++.++
T Consensus       247 ~L~~l~l~~~  256 (350)
T 4ay9_X          247 ALMEASLTYP  256 (350)
T ss_dssp             SCCEEECSCH
T ss_pred             ChhhCcCCCC
Confidence            6666666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=3.3e-18  Score=145.55  Aligned_cols=170  Identities=24%  Similarity=0.336  Sum_probs=126.4

Q ss_pred             ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      .+.++++++++.++.+|. .+++++++|++++|.+..++. .+.++++|++|++++|.++...   ...+..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS---AGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC---TTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC---HhHhccCCcCCEEE
Confidence            467889999999999886 566899999999999997765 4889999999999999998853   33467789999999


Q ss_pred             ccCCCCCCCCC--CccccCCcEEEccCCCcccccCCc-ccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCccCC
Q 018662          103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRV  177 (352)
Q Consensus       103 l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~  177 (352)
                      +++|.+..++.  +..+++|++|++++|.+..+++.. ..+++|++|++++|.+..+.  .+..+++|++|++++|.+..
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            99999998875  678899999999999888766543 34677777777777766632  35556666666666665543


Q ss_pred             cc--cccCCCCCcEEEccCCcc
Q 018662          178 ME--NLQNLTNLQELWLGRNRI  197 (352)
Q Consensus       178 ~~--~~~~~~~L~~L~l~~~~l  197 (352)
                      ++  .+..+++|+.+++++|.+
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCB
T ss_pred             cCHHHHhCCCCCCEEEeeCCce
Confidence            32  244444444444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=1.1e-18  Score=165.92  Aligned_cols=189  Identities=24%  Similarity=0.342  Sum_probs=104.5

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccC
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD  105 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  105 (352)
                      +..+.+....+.++.....+++|++|++++|.+..++ .+..+++|++|+|++|.+....     .+..+++|+.|++++
T Consensus        23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~-----~l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-----PLTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCG-----GGGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCCh-----hhccCCCCCEEECcC
Confidence            3444445555554444444455566666666555554 3555566666666665555431     144555566666666


Q ss_pred             CCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCC
Q 018662          106 NKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLT  185 (352)
Q Consensus       106 ~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  185 (352)
                      |.+..++.+..+++|+.|++++|.+..+.. ...+++|+.|++++|.+..+..+..+++|+.|++++|.+.....+..++
T Consensus        97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~  175 (605)
T 1m9s_A           97 NKIKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT  175 (605)
T ss_dssp             SCCCCCTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred             CCCCCChhhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCC
Confidence            655555555555666666666665555422 3334556666666665555555555666666666666555443455566


Q ss_pred             CCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCC
Q 018662          186 NLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM  221 (352)
Q Consensus       186 ~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~  221 (352)
                      +|+.|++++|.+... .+..+++|+.|++++|.+...
T Consensus       176 ~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          176 KLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred             CCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence            666666666655554 455556666666666655444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.80  E-value=1e-20  Score=181.05  Aligned_cols=107  Identities=19%  Similarity=0.170  Sum_probs=67.4

Q ss_pred             cccccCceeecCCCCCcCCCC--CC-CCCcccEEEcCCC-CCCc--chhhhhcCCCCcEEeccCCccCcccccccccc-c
Q 018662           21 EIDLSNTVLDLTSFQLHDLDS--VE-FPTNLTELDLTAN-RLTS--LDSRISHLSNLKKLSLRQNLIDDAAIEPISRW-D   93 (352)
Q Consensus        21 ~~~~~l~~L~l~~~~l~~~~~--~~-~~~~L~~L~l~~~-~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~   93 (352)
                      ...++|++|+++++.+++...  +. .+++|++|++++| .+..  ++..+.++++|++|++++|.+++..+..+..+ .
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            345678888888877654321  11 3578888888888 5543  55555678888888888887766543333333 2


Q ss_pred             cCCCCcEEEccCCCCCCCC-----C-CccccCCcEEEccCC
Q 018662           94 ALAGLEELILRDNKLMKIP-----D-VSIFKKLSVFDVSFN  128 (352)
Q Consensus        94 ~l~~L~~L~l~~~~l~~l~-----~-~~~~~~L~~L~l~~~  128 (352)
                      .+++|++|++++|. ..+.     . +..+++|++|++++|
T Consensus       182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            56778888887775 2221     1 234577777777766

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=7.7e-20  Score=164.18  Aligned_cols=102  Identities=17%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             CCcEEEccCCcccee-------cCCCC-CCCCEEEcCCCcCCCC-----c-Cccc-cccCcEEECCCCCCCCCC------
Q 018662          186 NLQELWLGRNRIKVV-------NLCGL-KCIKKISLQSNRLTSM-----K-GFEE-CIALEELYLSHNGISKME------  244 (352)
Q Consensus       186 ~L~~L~l~~~~l~~~-------~~~~~-~~L~~L~l~~~~~~~~-----~-~~~~-~~~L~~L~l~~n~l~~~~------  244 (352)
                      +|++|++++|.+...       .+..+ ++|+.|++++|.+...     + .+.. .++|+.|++++|.+++..      
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  247 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL  247 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence            555555555554433       12223 3666666666666552     1 2222 346777777777776642      


Q ss_pred             CCCCCCCCcEEEcCCCcCCCc---------ccccCCCCCCeEEcCCCCCcch
Q 018662          245 GLSTLVNLHVLDVSSNKLTLV---------DDIQNLSRLEDLWLNDNQIESL  287 (352)
Q Consensus       245 ~~~~~~~L~~L~l~~n~l~~~---------~~~~~~~~L~~L~l~~n~i~~~  287 (352)
                      .+..+++|++|++++|.+.++         ..+..+++|++|++++|++...
T Consensus       248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            245667777777777774333         3455667777888888877653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=1.4e-19  Score=162.59  Aligned_cols=129  Identities=16%  Similarity=0.156  Sum_probs=72.9

Q ss_pred             CCcEEEccCCcccee-------cCCCC-CCCCEEEcCCCcCCCCc------Ccccc-ccCcEEECCCCCCCCC-----C-
Q 018662          186 NLQELWLGRNRIKVV-------NLCGL-KCIKKISLQSNRLTSMK------GFEEC-IALEELYLSHNGISKM-----E-  244 (352)
Q Consensus       186 ~L~~L~l~~~~l~~~-------~~~~~-~~L~~L~l~~~~~~~~~------~~~~~-~~L~~L~l~~n~l~~~-----~-  244 (352)
                      +|++|++++|.+...       .+... ++|++|++++|.++...      .+..+ ++|+.|++++|.+.+.     + 
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~  218 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY  218 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence            455555555554432       12233 37777777777765542      12334 4777777777776652     1 


Q ss_pred             CCCC-CCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchHHH----HHHHhccccCccEeeccCCCccc
Q 018662          245 GLST-LVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLESI----VEAVAGSRETLTTIYLENNPQNL  313 (352)
Q Consensus       245 ~~~~-~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~  313 (352)
                      .+.. .++|++|++++|.+++.      ..+..+++|+.|++++|.+..+...    +...+..+++|+.|++++|++..
T Consensus       219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            1222 34677777777777654      2345567777777777774433221    12234455667777777776544


Q ss_pred             c
Q 018662          314 Q  314 (352)
Q Consensus       314 ~  314 (352)
                      .
T Consensus       299 ~  299 (362)
T 3goz_A          299 S  299 (362)
T ss_dssp             G
T ss_pred             c
Confidence            3

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.79  E-value=3.8e-20  Score=167.67  Aligned_cols=259  Identities=21%  Similarity=0.227  Sum_probs=196.7

Q ss_pred             EcCCCCCCcchhhhhcCCCCcEEeccCCccCcccccccc-ccccCCCCcEEEccCCCCCCC----CC--------Ccccc
Q 018662           52 DLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPIS-RWDALAGLEELILRDNKLMKI----PD--------VSIFK  118 (352)
Q Consensus        52 ~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l----~~--------~~~~~  118 (352)
                      .++...+..++..+..+++|++|++++|.+....+..++ .+..+++|++|++++|.+..+    |.        +..++
T Consensus        15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~   94 (386)
T 2ca6_A           15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP   94 (386)
T ss_dssp             SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred             CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence            333444446777788999999999999998875433332 356789999999999876643    22        25789


Q ss_pred             CCcEEEccCCCccc-----ccCCcccccCcceEEccCCcCCCc--c----cccCC---------CCCcEEEcCCCccC--
Q 018662          119 KLSVFDVSFNEITS-----SHGLSNVTDTLKELYVSKNEVPKM--E----EIEHF---------HDLQILEFGSNRLR--  176 (352)
Q Consensus       119 ~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~--~----~~~~~---------~~L~~L~l~~~~l~--  176 (352)
                      +|++|++++|.+..     ++.....+++|++|++++|.+...  .    .+..+         ++|++|++++|.+.  
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~  174 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  174 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence            99999999999876     233344578999999999998642  1    23333         89999999999885  


Q ss_pred             Ccc----cccCCCCCcEEEccCCcccee--------cCCCCCCCCEEEcCCCcCCC-----Cc-CccccccCcEEECCCC
Q 018662          177 VME----NLQNLTNLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTS-----MK-GFEECIALEELYLSHN  238 (352)
Q Consensus       177 ~~~----~~~~~~~L~~L~l~~~~l~~~--------~~~~~~~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~n  238 (352)
                      .++    .+..+++|+.|++++|.+...        .+..+++|+.|++++|.++.     ++ .+..+++|+.|++++|
T Consensus       175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n  254 (386)
T 2ca6_A          175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  254 (386)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence            222    456788999999999998732        56678999999999999852     23 4678899999999999


Q ss_pred             CCCCC------CCC--CCCCCCcEEEcCCCcCCC-----c-ccc-cCCCCCCeEEcCCCCCcchHHHHHHHhccccCccE
Q 018662          239 GISKM------EGL--STLVNLHVLDVSSNKLTL-----V-DDI-QNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT  303 (352)
Q Consensus       239 ~l~~~------~~~--~~~~~L~~L~l~~n~l~~-----~-~~~-~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~  303 (352)
                      .+++.      ..+  ..+++|++|++++|.+++     + ..+ ..+++|+.|++++|+++.....+..+...++.++.
T Consensus       255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~  334 (386)
T 2ca6_A          255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR  334 (386)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTC
T ss_pred             CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCc
Confidence            98864      233  448899999999999987     4 334 56899999999999999766444555555677776


Q ss_pred             eeccCCC
Q 018662          304 IYLENNP  310 (352)
Q Consensus       304 L~l~~n~  310 (352)
                      +++..+.
T Consensus       335 ~~l~~~d  341 (386)
T 2ca6_A          335 GELDELD  341 (386)
T ss_dssp             CEECCCC
T ss_pred             chhhhcc
Confidence            6666553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=2.5e-19  Score=153.48  Aligned_cols=170  Identities=19%  Similarity=0.307  Sum_probs=120.4

Q ss_pred             cccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCC
Q 018662          116 IFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN  195 (352)
Q Consensus       116 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~  195 (352)
                      .+.++..++++++.+..+. ....+++|++|++++|.+..++.+..+++|++|++++|.+...+.+..+++|+.|++++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence            4556667777777776655 234467788888888877776677777788888888877766555777777777777777


Q ss_pred             cccee-cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCC
Q 018662          196 RIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRL  274 (352)
Q Consensus       196 ~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L  274 (352)
                      .+... .+.. ++|+.|++++|.++..+.+..+++|+.|++++|++++++.+..+++|+.|++++|++++++.+..+++|
T Consensus        96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L  174 (263)
T 1xeu_A           96 RLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKV  174 (263)
T ss_dssp             CCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred             ccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCC
Confidence            77665 2233 677777777777776666667777777777777777766666677777777777777766666667777


Q ss_pred             CeEEcCCCCCcch
Q 018662          275 EDLWLNDNQIESL  287 (352)
Q Consensus       275 ~~L~l~~n~i~~~  287 (352)
                      +.|++++|+++..
T Consensus       175 ~~L~l~~N~~~~~  187 (263)
T 1xeu_A          175 NWIDLTGQKCVNE  187 (263)
T ss_dssp             CEEEEEEEEEECC
T ss_pred             CEEeCCCCcccCC
Confidence            7777777776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.78  E-value=8.1e-18  Score=143.14  Aligned_cols=172  Identities=20%  Similarity=0.287  Sum_probs=96.7

Q ss_pred             CCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCc
Q 018662          119 KLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNR  196 (352)
Q Consensus       119 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~  196 (352)
                      ..++++++++.+..++...  .+.++.|++++|.+...  ..+..+++|++|++++|.+.....                
T Consensus        15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------------   76 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA----------------   76 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------------
T ss_pred             CCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH----------------
Confidence            4556666666666555322  24566666666655542  234445555555555554432211                


Q ss_pred             cceecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc--ccccC
Q 018662          197 IKVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQN  270 (352)
Q Consensus       197 l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~  270 (352)
                         ..+..+++|++|++++|.++..+  .+..+++|++|++++|.++.++.  +..+++|++|++++|.++++  ..+..
T Consensus        77 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  153 (251)
T 3m19_A           77 ---GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK  153 (251)
T ss_dssp             ---TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ---hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCc
Confidence               02344555555555555555543  34556666666666666666543  45566666666666666665  23556


Q ss_pred             CCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccc
Q 018662          271 LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQ  314 (352)
Q Consensus       271 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  314 (352)
                      +++|+.|++++|.++.++.   ..+..+++|+.|++++|++.|.
T Consensus       154 l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          154 LTNLQTLSLSTNQLQSVPH---GAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCCCEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCceeCC
Confidence            6666666666666665542   2345566666777777766665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=5.7e-19  Score=156.84  Aligned_cols=194  Identities=16%  Similarity=0.197  Sum_probs=113.8

Q ss_pred             cccCCcEEEccCCCccc--ccCCcccccCcceEEccCCcCCC--cccccCCCCCcEEEcCCC-ccCC--c-ccccCCCCC
Q 018662          116 IFKKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSN-RLRV--M-ENLQNLTNL  187 (352)
Q Consensus       116 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~-~l~~--~-~~~~~~~~L  187 (352)
                      .+++|++|++++|.+..  ++.....+++|++|++++|.+..  +..+..+++|++|++++| .+..  + ..+..+++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            34444444444444332  12222234445555555544332  233455566666666665 3431  2 224556677


Q ss_pred             cEEEccCC-cccee----cCCCCC-CCCEEEcCCCc--CCC--Cc-CccccccCcEEECCCCC-CCC--CCCCCCCCCCc
Q 018662          188 QELWLGRN-RIKVV----NLCGLK-CIKKISLQSNR--LTS--MK-GFEECIALEELYLSHNG-ISK--MEGLSTLVNLH  253 (352)
Q Consensus       188 ~~L~l~~~-~l~~~----~~~~~~-~L~~L~l~~~~--~~~--~~-~~~~~~~L~~L~l~~n~-l~~--~~~~~~~~~L~  253 (352)
                      ++|++++| .+...    .+..++ +|++|++++|.  ++.  .+ .+..+++|+.|++++|. +++  ++.+..+++|+
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~  250 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  250 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence            77777776 65542    345566 77777777773  332  22 34567888888888887 443  44567778899


Q ss_pred             EEEcCCCc-CCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          254 VLDVSSNK-LTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       254 ~L~l~~n~-l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +|++++|. +...  ..+..+++|+.|++++| ++.  +......   .++..|++++|.+++..
T Consensus       251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~---~~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLK---EALPHLQINCSHFTTIA  309 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHH---HHSTTSEESCCCSCCTT
T ss_pred             EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHH---hhCcceEEecccCcccc
Confidence            99998885 3322  35777899999999999 553  2223332   33566668888877766

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=2e-17  Score=155.68  Aligned_cols=177  Identities=20%  Similarity=0.314  Sum_probs=145.4

Q ss_pred             CCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCc
Q 018662           96 AGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR  174 (352)
Q Consensus        96 ~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  174 (352)
                      .+|+.|++++|.+..+|. +  .++|++|++++|.+..++   ..+++|++|++++|.+..++.+..  +|++|++++|.
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSC
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCc
Confidence            489999999999999887 4  488999999999998766   447899999999999888655433  89999999999


Q ss_pred             cCCcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCC--
Q 018662          175 LRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNL--  252 (352)
Q Consensus       175 l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L--  252 (352)
                      +..++.  .+++|+.|++++|.+..... .+++|+.|++++|.++.+|.+.  ++|+.|++++|.++.++.+..  +|  
T Consensus       132 l~~lp~--~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~  204 (571)
T 3cvr_A          132 LTMLPE--LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV--RNHH  204 (571)
T ss_dssp             CSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC-------
T ss_pred             CCCCCC--cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH--hhhc
Confidence            876655  67889999999998887643 6788999999999988887644  889999999999988877433  67  


Q ss_pred             -----cEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcc
Q 018662          253 -----HVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIES  286 (352)
Q Consensus       253 -----~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~  286 (352)
                           +.|++++|+++.+ ..+..+++|+.|++++|+++.
T Consensus       205 ~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             ---CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             ccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence                 8999999999888 446668899999999999875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=4.1e-17  Score=153.60  Aligned_cols=179  Identities=17%  Similarity=0.197  Sum_probs=148.4

Q ss_pred             CCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEc
Q 018662           69 SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYV  148 (352)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  148 (352)
                      .+|+.|++++|.+++. |   ..+  .++|++|++++|.+..+|  ..+++|++|++++|.+.+++. ..  .+|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~l-p---~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~--~~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSL-P---DNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LP--ASLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSCC-C---SCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CC--TTCCEEEC
T ss_pred             CCccEEEeCCCCCCcc-C---HhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hh--cCCCEEEC
Confidence            3899999999998873 2   122  378999999999999998  668999999999999998766 22  39999999


Q ss_pred             cCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccc
Q 018662          149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECI  228 (352)
Q Consensus       149 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  228 (352)
                      ++|.+..++.  .+++|+.|++++|.++.++.  .+++|+.|++++|.+..... -.++|+.|++++|.++.+|.+..  
T Consensus       128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~lp~~~~--  200 (571)
T 3cvr_A          128 DNNQLTMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLESLPAVPV--  200 (571)
T ss_dssp             CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCC---
T ss_pred             CCCcCCCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCCchhhHHH--
Confidence            9999988655  78999999999999986655  67899999999999887633 22899999999999998876433  


Q ss_pred             cC-------cEEECCCCCCCCCCC-CCCCCCCcEEEcCCCcCCCc
Q 018662          229 AL-------EELYLSHNGISKMEG-LSTLVNLHVLDVSSNKLTLV  265 (352)
Q Consensus       229 ~L-------~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~  265 (352)
                      +|       +.|++++|.++.++. +..+++|+.|++++|++++.
T Consensus       201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence            67       999999999999874 66789999999999999765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=2.6e-18  Score=147.10  Aligned_cols=166  Identities=20%  Similarity=0.274  Sum_probs=99.4

Q ss_pred             ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      ..+..++++++.+++++.+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..    + +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~----~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLS----P-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG----G-GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCCh----h-hccCCCCCEEEC
Confidence            345666677777776665555677777777777777666 5667777777777777766632    1 556677777777


Q ss_pred             cCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccC
Q 018662          104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN  183 (352)
Q Consensus       104 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  183 (352)
                      ++|.+..++.+.. ++|++|++++|.+..+.. ...+++|+.|++++|.+..++.+..+++|+.|++++|.+.....+..
T Consensus        93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~  170 (263)
T 1xeu_A           93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTR  170 (263)
T ss_dssp             CSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTT
T ss_pred             CCCccCCcCcccc-CcccEEEccCCccCCChh-hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhcc
Confidence            7777776665444 666666666666665432 23345555555555555554445555555555555555544344444


Q ss_pred             CCCCcEEEccCCcc
Q 018662          184 LTNLQELWLGRNRI  197 (352)
Q Consensus       184 ~~~L~~L~l~~~~l  197 (352)
                      +++|+.|++++|.+
T Consensus       171 l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          171 LKKVNWIDLTGQKC  184 (263)
T ss_dssp             CCCCCEEEEEEEEE
T ss_pred             CCCCCEEeCCCCcc
Confidence            44444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=2.5e-19  Score=159.20  Aligned_cols=234  Identities=15%  Similarity=0.153  Sum_probs=153.6

Q ss_pred             CcccEEEcCCCCCCcchhhhhcC--CCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCC--CCC-CccccCC
Q 018662           46 TNLTELDLTANRLTSLDSRISHL--SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK--IPD-VSIFKKL  120 (352)
Q Consensus        46 ~~L~~L~l~~~~l~~l~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--l~~-~~~~~~L  120 (352)
                      ..++.++++++.+.  +..+..+  ++++.|+++++.+.+..    ..+..+++|++|++++|.+..  ++. +..+++|
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~----~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPL----AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCC----CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccc----hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            34677777777666  3445555  77788888877776642    224456778888887777653  443 5667778


Q ss_pred             cEEEccCCCcccc-cCCcccccCcceEEccCC-cCCC--c-ccccCCCCCcEEEcCCC-ccCC---cccccCCC-CCcEE
Q 018662          121 SVFDVSFNEITSS-HGLSNVTDTLKELYVSKN-EVPK--M-EEIEHFHDLQILEFGSN-RLRV---MENLQNLT-NLQEL  190 (352)
Q Consensus       121 ~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~-~~~~--~-~~~~~~~~L~~L~l~~~-~l~~---~~~~~~~~-~L~~L  190 (352)
                      ++|++++|.+... ......+++|++|++++| .+..  + ..+..+++|++|++++| .++.   ...+..++ +|++|
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            8888887776532 222333677888888877 4543  2 23566788888888887 6652   23466777 88888


Q ss_pred             EccCCc--ccee----cCCCCCCCCEEEcCCCc-CCCC--cCccccccCcEEECCCCC-CCC--CCCCCCCCCCcEEEcC
Q 018662          191 WLGRNR--IKVV----NLCGLKCIKKISLQSNR-LTSM--KGFEECIALEELYLSHNG-ISK--MEGLSTLVNLHVLDVS  258 (352)
Q Consensus       191 ~l~~~~--l~~~----~~~~~~~L~~L~l~~~~-~~~~--~~~~~~~~L~~L~l~~n~-l~~--~~~~~~~~~L~~L~l~  258 (352)
                      ++++|.  +...    .+..+++|+.|++++|. ++..  +.+..+++|++|++++|. +..  +..+..+++|++|+++
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence            888873  4322    44567888888888887 4432  456778888888888884 322  2246678889999998


Q ss_pred             CCcCCCcccccCC-CCCCeEEcCCCCCcch
Q 018662          259 SNKLTLVDDIQNL-SRLEDLWLNDNQIESL  287 (352)
Q Consensus       259 ~n~l~~~~~~~~~-~~L~~L~l~~n~i~~~  287 (352)
                      +| +... .+..+ ..+..|++++|.+++.
T Consensus       281 ~~-i~~~-~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          281 GI-VPDG-TLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             TS-SCTT-CHHHHHHHSTTSEESCCCSCCT
T ss_pred             Cc-cCHH-HHHHHHhhCcceEEecccCccc
Confidence            88 4332 22222 2366677888888864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.76  E-value=3.8e-20  Score=177.05  Aligned_cols=287  Identities=18%  Similarity=0.215  Sum_probs=182.4

Q ss_pred             cccccccccCceeecCCCCCcCCCC-----C-CCCCcccEEEcCCCC--CC--cchhhhhcCCCCcEEeccCC-ccCccc
Q 018662           17 DQAVEIDLSNTVLDLTSFQLHDLDS-----V-EFPTNLTELDLTANR--LT--SLDSRISHLSNLKKLSLRQN-LIDDAA   85 (352)
Q Consensus        17 ~~~~~~~~~l~~L~l~~~~l~~~~~-----~-~~~~~L~~L~l~~~~--l~--~l~~~~~~l~~L~~L~l~~~-~~~~~~   85 (352)
                      ..+....++|++|+++++.+++...     + ..+++|++|++++|.  +.  .++..+.++++|++|++++| .+.+  
T Consensus       149 ~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--  226 (594)
T 2p1m_B          149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--  226 (594)
T ss_dssp             HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--
T ss_pred             HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--
Confidence            3445567899999999998776431     1 246799999999997  33  23334567899999999988 3332  


Q ss_pred             cccccccccCCCCcEEEccCCCC-------------------------------CCCCC-CccccCCcEEEccCCCcccc
Q 018662           86 IEPISRWDALAGLEELILRDNKL-------------------------------MKIPD-VSIFKKLSVFDVSFNEITSS  133 (352)
Q Consensus        86 ~~~~~~~~~l~~L~~L~l~~~~l-------------------------------~~l~~-~~~~~~L~~L~l~~~~~~~~  133 (352)
                        ....+..+++|++|++..+..                               ..++. +..+++|++|++++|.+...
T Consensus       227 --l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~  304 (594)
T 2p1m_B          227 --LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY  304 (594)
T ss_dssp             --HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred             --HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence              223345677788777654421                               11222 22467888888888875432


Q ss_pred             --cCCcccccCcceEEccCCcCCC--ccc-ccCCCCCcEEEcCC---------CccC--Ccccc-cCCCCCcEEEccCCc
Q 018662          134 --HGLSNVTDTLKELYVSKNEVPK--MEE-IEHFHDLQILEFGS---------NRLR--VMENL-QNLTNLQELWLGRNR  196 (352)
Q Consensus       134 --~~~~~~~~~L~~L~l~~~~~~~--~~~-~~~~~~L~~L~l~~---------~~l~--~~~~~-~~~~~L~~L~l~~~~  196 (352)
                        ......+++|++|++.+| +..  +.. ...+++|++|++.+         +.+.  .+..+ ..+++|+.|.+..+.
T Consensus       305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~  383 (594)
T 2p1m_B          305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ  383 (594)
T ss_dssp             HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred             HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence              122234678888888877 322  111 23477888888733         2222  11112 347788888777777


Q ss_pred             ccee---cC-CCCCCCCEEEcC--C----CcCCCCcC-------ccccccCcEEECCCCCCCC--CCCCC-CCCCCcEEE
Q 018662          197 IKVV---NL-CGLKCIKKISLQ--S----NRLTSMKG-------FEECIALEELYLSHNGISK--MEGLS-TLVNLHVLD  256 (352)
Q Consensus       197 l~~~---~~-~~~~~L~~L~l~--~----~~~~~~~~-------~~~~~~L~~L~l~~n~l~~--~~~~~-~~~~L~~L~  256 (352)
                      +...   .+ ..+++|+.|+++  +    +.++..+.       +..+++|+.|++++ .+++  ++.+. .+++|+.|+
T Consensus       384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~  462 (594)
T 2p1m_B          384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLS  462 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEE
T ss_pred             cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEee
Confidence            6654   22 246888888888  3    34443321       45678888888876 4443  12222 267799999


Q ss_pred             cCCCcCCCc--ccc-cCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCc
Q 018662          257 VSSNKLTLV--DDI-QNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQ  311 (352)
Q Consensus       257 l~~n~l~~~--~~~-~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~  311 (352)
                      +++|.+++.  ..+ ..+++|++|++++|.+++  ..+......+++|+.|++++|+.
T Consensus       463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD--KALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             EESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH--HHHHHTGGGGGGSSEEEEESSCC
T ss_pred             ccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH--HHHHHHHHhCCCCCEEeeeCCCC
Confidence            998888654  222 568889999999999854  33344556688899999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.7e-17  Score=135.71  Aligned_cols=145  Identities=19%  Similarity=0.302  Sum_probs=67.3

Q ss_pred             cCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCc
Q 018662          141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNR  217 (352)
Q Consensus       141 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~  217 (352)
                      ++|++|++++|.+..++.+..+++|++|++++|.+..++.+..+++|+.|++++|.+...   .+..+++|++|++++|.
T Consensus        44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  123 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA  123 (197)
T ss_dssp             HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred             CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence            344444444444443333444445555555555444444444555555555555544431   33444455555555554


Q ss_pred             CCCC--cCccccccCcEEECCCCC-CCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCc
Q 018662          218 LTSM--KGFEECIALEELYLSHNG-ISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE  285 (352)
Q Consensus       218 ~~~~--~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~  285 (352)
                      ++..  ..+..+++|+.|++++|. +..++.+..+++|++|++++|.+++++.+..+++|+.|++++|+|.
T Consensus       124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred             cCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence            4431  234444555555555554 4444444444455555555555544444444455555555555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=2.4e-16  Score=132.07  Aligned_cols=157  Identities=23%  Similarity=0.264  Sum_probs=131.4

Q ss_pred             ccccccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCcccccccccccc
Q 018662           16 PDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDA   94 (352)
Q Consensus        16 ~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   94 (352)
                      ....-....+-+.++++++.++.+|. ..+++|++|++++|.++.+ +..+.++++|++|++++|.++..   ....|..
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i---~~~~~~~   86 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL---PVGVFDS   86 (229)
T ss_dssp             CCCCTTCEEETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTT
T ss_pred             ccCCCCCEEeCCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc---Chhhccc
Confidence            33444445567889999999999986 6679999999999999987 45589999999999999999775   2334677


Q ss_pred             CCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcc--cccCCCCCcEEEc
Q 018662           95 LAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEF  170 (352)
Q Consensus        95 l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l  170 (352)
                      +++|++|++++|.+..++.  +..+++|++|++++|.+..++.....+++|++|++++|.+..+.  .+..+++|+.+++
T Consensus        87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            9999999999999998876  67899999999999999988776677889999999999888743  4777888899999


Q ss_pred             CCCccC
Q 018662          171 GSNRLR  176 (352)
Q Consensus       171 ~~~~l~  176 (352)
                      .+|++.
T Consensus       167 ~~N~~~  172 (229)
T 3e6j_A          167 FGNPWD  172 (229)
T ss_dssp             TTSCBC
T ss_pred             eCCCcc
Confidence            888775

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=1.8e-16  Score=141.48  Aligned_cols=213  Identities=18%  Similarity=0.220  Sum_probs=168.7

Q ss_pred             cccCceeecCCCCCcCCCCC--CCCCcccEEEcCCCCCC-cchhh-hhcCCCCcE-EeccCCccCccccccccccccCCC
Q 018662           23 DLSNTVLDLTSFQLHDLDSV--EFPTNLTELDLTANRLT-SLDSR-ISHLSNLKK-LSLRQNLIDDAAIEPISRWDALAG   97 (352)
Q Consensus        23 ~~~l~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~l~-~l~~~-~~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~l~~   97 (352)
                      ++++++|++++|+|+.++..  ..+++|++|++++|.+. .++.. |.+++++++ +.+++|.++...   ...|..+++
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~---~~~f~~l~~  105 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN---PEAFQNLPN  105 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC---TTSBCCCTT
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC---chhhhhccc
Confidence            57899999999999999864  45799999999999986 56654 788998876 555668888763   346778999


Q ss_pred             CcEEEccCCCCCCCCC--CccccCCcEEEccC-CCcccccCCc--ccccCcceEEccCCcCCCc-ccccCCCCCcEEEcC
Q 018662           98 LEELILRDNKLMKIPD--VSIFKKLSVFDVSF-NEITSSHGLS--NVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFG  171 (352)
Q Consensus        98 L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~-~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~  171 (352)
                      |++|++++|.+..++.  +....++..+++.+ +.+..++...  .....++.|++++|.+..+ .......+++++.+.
T Consensus       106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~  185 (350)
T 4ay9_X          106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS  185 (350)
T ss_dssp             CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred             cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhc
Confidence            9999999999998887  34456778888866 4565554332  2245789999999999885 345566789999997


Q ss_pred             C-CccCCcc--cccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCC-cCCCCcCccccccCcEEECCCC
Q 018662          172 S-NRLRVME--NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSN-RLTSMKGFEECIALEELYLSHN  238 (352)
Q Consensus       172 ~-~~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~n  238 (352)
                      + +.++.++  .+..+++|+.|++++|.+.......+.+|+.|.+.++ .++..|.+..+++|+.+++.++
T Consensus       186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred             cCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence            5 6676553  4789999999999999999887777889999988765 6777788889999999999763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=7e-17  Score=132.08  Aligned_cols=149  Identities=16%  Similarity=0.232  Sum_probs=101.4

Q ss_pred             ccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCC
Q 018662           93 DALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS  172 (352)
Q Consensus        93 ~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  172 (352)
                      ..+++|++|++++|.+..++.+..+++|++|++++|.+...                       ..+..+++|++|++++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~-----------------------~~l~~l~~L~~L~l~~   97 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-----------------------NPISGLSNLERLRIMG   97 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC-----------------------GGGTTCTTCCEEEEEC
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc-----------------------hhhhcCCCCCEEEeEC
Confidence            34567777777777777766666677777777776654433                       3344455555555555


Q ss_pred             CccCC--cccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCc-CCCCcCccccccCcEEECCCCCCCCCCCC
Q 018662          173 NRLRV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNR-LTSMKGFEECIALEELYLSHNGISKMEGL  246 (352)
Q Consensus       173 ~~l~~--~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  246 (352)
                      |.+..  +..+..+++|+.|++++|.+...   .+..+++|+.|++++|. +...+.+..+++|+.|++++|.+++++.+
T Consensus        98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l  177 (197)
T 4ezg_A           98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGI  177 (197)
T ss_dssp             TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTG
T ss_pred             CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHh
Confidence            55542  44556666677777777666652   56677778888888886 77777778888888999988888888778


Q ss_pred             CCCCCCcEEEcCCCcCCC
Q 018662          247 STLVNLHVLDVSSNKLTL  264 (352)
Q Consensus       247 ~~~~~L~~L~l~~n~l~~  264 (352)
                      ..+++|++|++++|++.+
T Consensus       178 ~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          178 EDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGCSSCCEEEECBC----
T ss_pred             ccCCCCCEEEeeCcccCC
Confidence            888889999998888754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=4.2e-16  Score=129.70  Aligned_cols=147  Identities=20%  Similarity=0.344  Sum_probs=121.8

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  104 (352)
                      -+.++++++.++.+|. .+++++++|++++|.++.++. .|..+++|++|++++|.++...   ...|..+++|++|+++
T Consensus        13 ~~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~---~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA---PDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TTEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC---TTTTTTCSSCCEEECC
T ss_pred             CCEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC---HHHhhCCcCCCEEECC
Confidence            4688999999999986 566899999999999998877 5889999999999999998863   3467788999999999


Q ss_pred             CCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCccC
Q 018662          105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLR  176 (352)
Q Consensus       105 ~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~  176 (352)
                      +|.+..+|.  +..+++|++|++++|.+..+.+ .+..+++|++|++++|.+..+.  .+..+++|+.+++.+|++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            999999887  6789999999999999988754 3444778888888888877743  3667777777777777663

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=3.3e-16  Score=129.19  Aligned_cols=164  Identities=22%  Similarity=0.275  Sum_probs=118.9

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  104 (352)
                      -+.++++++.++.++. ..++++++|++++|.++.++.. +..+++|++|++++|.++..   ....|..+++|++|+++
T Consensus         9 ~~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL---PNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC---CTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc---ChhhcCCCCCcCEEECC
Confidence            3678888888888874 5678999999999999988765 68899999999999988875   22345678999999999


Q ss_pred             CCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCccCCcc
Q 018662          105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRVME  179 (352)
Q Consensus       105 ~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~  179 (352)
                      +|.+..++.  +..+++|++|++++|.+..+++. +..+++|++|++++|.+..+.  .+..+++|+++++.+|.+.   
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---  161 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---  161 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence            999988776  67888999999999988876653 344677777777777766532  2555666666666665432   


Q ss_pred             cccCCCCCcEEEccCCccc
Q 018662          180 NLQNLTNLQELWLGRNRIK  198 (352)
Q Consensus       180 ~~~~~~~L~~L~l~~~~l~  198 (352)
                        ..++.++.+++..+.+.
T Consensus       162 --~~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          162 --CTCPGIRYLSEWINKHS  178 (208)
T ss_dssp             --CCTTTTHHHHHHHHHCT
T ss_pred             --cCCCCHHHHHHHHHhCC
Confidence              23444555544444333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=6.1e-16  Score=128.69  Aligned_cols=144  Identities=25%  Similarity=0.418  Sum_probs=107.6

Q ss_pred             EEEcCCCccCCccc-ccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC--cCccccccCcEEECCCCCC
Q 018662          167 ILEFGSNRLRVMEN-LQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGI  240 (352)
Q Consensus       167 ~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l  240 (352)
                      .++..++.+..++. +.  +.++.|++++|.+...   .+..+++|+.|++++|.+...  ..+..+++|++|++++|.+
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            44444444443322 22  4667777777766655   456677788888888877766  2577888888888888888


Q ss_pred             CCCCC--CCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          241 SKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       241 ~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +.++.  +..+++|++|++++|+++++  ..+..+++|+.|++++|.|+.++   ...+..+++|++|++++|+|.|++
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA---KGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC---HHHHhCCCCCCEEEeCCCCcCCCC
Confidence            88764  67788899999999998887  56778889999999999998766   334667889999999999998887

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=6.5e-16  Score=128.52  Aligned_cols=147  Identities=21%  Similarity=0.359  Sum_probs=120.5

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh--hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS--RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      -+.++++++.++.+|. .+++.+++|++++|.++.++.  .|..+++|++|++++|.++...   ...|..+++|++|++
T Consensus        13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~---~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE---EGAFEGASGVNEILL   88 (220)
T ss_dssp             TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEEC
T ss_pred             CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC---HHHhCCCCCCCEEEC
Confidence            4689999999999876 667889999999999998743  3889999999999999998853   335778999999999


Q ss_pred             cCCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccC
Q 018662          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR  176 (352)
Q Consensus       104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~  176 (352)
                      ++|.+..++.  +..+++|++|++++|.+..+.+ .+..+++|++|++++|.+..+  ..+..+++|+.+++++|++.
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            9999998876  7889999999999999988753 344577888888888887774  45677777777777777664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=7.6e-16  Score=128.98  Aligned_cols=147  Identities=29%  Similarity=0.347  Sum_probs=109.1

Q ss_pred             cEEEcCCCccCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCC
Q 018662          166 QILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGI  240 (352)
Q Consensus       166 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l  240 (352)
                      +.++.+++.+..++. ...++|+.|++++|.+...   .+..+++|+.|++++|.+..++  .+..+++|+.|++++|.+
T Consensus        22 ~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           22 TTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            344454444433222 1125666777777666655   4566778888888888877775  367788899999999988


Q ss_pred             CCCCC--CCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662          241 SKMEG--LSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQII  316 (352)
Q Consensus       241 ~~~~~--~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  316 (352)
                      +.++.  +..+++|++|++++|+++.+ ..+..+++|+.|++++|.++.++.   ..+..+++|+.|++++|++.|++.
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH---GAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCCccCCcc
Confidence            88754  67888899999999998877 567788999999999999987763   456778899999999999998883

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=8.9e-16  Score=127.71  Aligned_cols=127  Identities=29%  Similarity=0.415  Sum_probs=89.6

Q ss_pred             CCcEEEccCCcccee----cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEc
Q 018662          186 NLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDV  257 (352)
Q Consensus       186 ~L~~L~l~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l  257 (352)
                      .++.|++++|.+...    .+..+++|+.|++++|.++..+  .+..+++|+.|++++|.++.++.  +..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            345555555555544    2445666777777777666653  46677778888888887777643  667778888888


Q ss_pred             CCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          258 SSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       258 ~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      ++|+++++  ..+..+++|+.|++++|.++.++   ...+..+++|+.|++++|+|.|++
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEecCcCCcCCC
Confidence            88888776  45777788888888888888663   234566788888888888888877

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.67  E-value=1e-15  Score=137.21  Aligned_cols=130  Identities=27%  Similarity=0.379  Sum_probs=97.3

Q ss_pred             CCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCcEE
Q 018662          183 NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVL  255 (352)
Q Consensus       183 ~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L  255 (352)
                      .+++|+.|++++|.+...   .+..+++|+.|++++|.++..+  .+..+++|+.|++++|.+..++  .+..+++|++|
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            556666666666666555   3566777777777777777664  3677888889999988888763  57788899999


Q ss_pred             EcCCCcCCCcc--cc---cCCCCCCeEEcCCCCCcchHHHHHHHhccccC--ccEeeccCCCccccc
Q 018662          256 DVSSNKLTLVD--DI---QNLSRLEDLWLNDNQIESLESIVEAVAGSRET--LTTIYLENNPQNLQI  315 (352)
Q Consensus       256 ~l~~n~l~~~~--~~---~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~  315 (352)
                      ++++|.++.++  .+   ..+++|+.|++++|.|+.++..   .+..++.  ++.|++++|||.|++
T Consensus       142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH---HHHHSCHHHHTTEECCSSCEECCH
T ss_pred             ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH---HhhhccHhhcceEEecCCCccCCc
Confidence            99999998872  23   5689999999999999987632   3344555  488999999999988

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=1e-15  Score=137.23  Aligned_cols=169  Identities=25%  Similarity=0.392  Sum_probs=137.8

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hh-cCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-IS-HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      -+.++++++.++.+|. .+++.+++|++++|.++.++.. +. ++++|++|++++|.++...   ...|..+++|++|++
T Consensus        20 ~~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~---~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS---SEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TTEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC---hhhccCCCCCCEEEC
Confidence            4689999999999886 6778899999999999988776 55 8999999999999998863   345778999999999


Q ss_pred             cCCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCccc--c---cCCCCCcEEEcCCCcc
Q 018662          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKMEE--I---EHFHDLQILEFGSNRL  175 (352)
Q Consensus       104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~--~---~~~~~L~~L~l~~~~l  175 (352)
                      ++|.+..++.  +..+++|++|++++|.+..+.+ .+..+++|++|++++|.+..++.  +   ..+++|+.|++++|.+
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            9999998776  7889999999999999988754 44558899999999999888432  3   5688999999999988


Q ss_pred             CCcc--cccCCCC--CcEEEccCCccc
Q 018662          176 RVME--NLQNLTN--LQELWLGRNRIK  198 (352)
Q Consensus       176 ~~~~--~~~~~~~--L~~L~l~~~~l~  198 (352)
                      ..++  .+..++.  ++.|++.+|.+.
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CccCHHHhhhccHhhcceEEecCCCcc
Confidence            7543  3556665  477888887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.65  E-value=5e-15  Score=122.10  Aligned_cols=161  Identities=21%  Similarity=0.341  Sum_probs=91.7

Q ss_pred             ceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcc--cccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcC
Q 018662          144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME--NLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRL  218 (352)
Q Consensus       144 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~  218 (352)
                      +.++++++.+..++ ....+++++|+++++.+..+.  .+..+++|++|++++|.+...   .+..+++|++|++++|.+
T Consensus        10 ~~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           10 TTVECYSQGRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            45556655555432 122346777777777665332  245666666666666665554   244556666666666666


Q ss_pred             CCCcC--ccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHH
Q 018662          219 TSMKG--FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVE  292 (352)
Q Consensus       219 ~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~  292 (352)
                      +..+.  +..+++|++|++++|.+++++.  +..+++|++|++++|.++++  ..+..+++|+.|++++|++..      
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------  162 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------  162 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence            55532  4556666666666666665542  45556666666666666555  234555666666666665442      


Q ss_pred             HHhccccCccEeeccCCCccccc
Q 018662          293 AVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       293 ~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                          .+++|+.|++.+|.+.+.+
T Consensus       163 ----~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTTB
T ss_pred             ----CCCCHHHHHHHHHhCCcee
Confidence                2355566666666555555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=1.5e-18  Score=164.01  Aligned_cols=103  Identities=29%  Similarity=0.394  Sum_probs=54.7

Q ss_pred             CCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC-CCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcc
Q 018662          208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIES  286 (352)
Q Consensus       208 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~  286 (352)
                      |+.|++++|.++.+|.+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+++++.+..+++|+.|++++|.|+.
T Consensus       443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~  522 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ  522 (567)
T ss_dssp             CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCS
T ss_pred             ceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCC
Confidence            5555555555555555555555555555555555543 344555555555555555555555555555555555555554


Q ss_pred             hHHHHHHHhccccCccEeeccCCCcc
Q 018662          287 LESIVEAVAGSRETLTTIYLENNPQN  312 (352)
Q Consensus       287 ~~~~~~~~~~~~~~L~~L~l~~n~~~  312 (352)
                      ++.  ...+..+++|+.|++++|++.
T Consensus       523 ~~~--p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          523 SAA--IQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             SST--TGGGGGCTTCCEEECTTSGGG
T ss_pred             CCC--cHHHhcCCCCCEEEecCCcCC
Confidence            410  112344555555555555433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=2.4e-14  Score=116.45  Aligned_cols=125  Identities=21%  Similarity=0.251  Sum_probs=105.3

Q ss_pred             cEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc-CccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCC
Q 018662          188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTL  264 (352)
Q Consensus       188 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~  264 (352)
                      +.++++++.+........++++.|++++|.++.+| .+..+++|+.|++++|.++.++  .+..+++|++|++++|.+++
T Consensus        13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence            45677777666664444568899999999888775 6788899999999999999875  48889999999999999998


Q ss_pred             c--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          265 V--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       265 ~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +  ..+..+++|+.|++++|.|+.++.   ..+..+++|+.|++++|+|.|++
T Consensus        93 i~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           93 IPPRTFDGLKSLRLLSLHGNDISVVPE---GAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECCSSCEECSG
T ss_pred             eCHHHhCCCCCCCEEECCCCCCCeeCh---hhhhcCccccEEEeCCCCeecCC
Confidence            8  468899999999999999997763   45677899999999999999988

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=3.2e-14  Score=115.70  Aligned_cols=126  Identities=25%  Similarity=0.303  Sum_probs=106.5

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccC
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD  105 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  105 (352)
                      -+.++++++.++.+|. .+++++++|++++|.++.+|..+.++++|++|++++|.++...   ...|..+++|++|++++
T Consensus        12 ~~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~---~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS---NQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC---HhHccCCCCCCEEECCC
Confidence            3689999999999986 5678999999999999999988999999999999999999863   34577899999999999


Q ss_pred             CCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCC
Q 018662          106 NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK  155 (352)
Q Consensus       106 ~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~  155 (352)
                      |.+..+++  +..+++|++|++++|.+..++.. +..+++|+.|++++|.+..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99998875  88899999999999999887653 3346777777777776543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=4.7e-14  Score=114.65  Aligned_cols=126  Identities=24%  Similarity=0.339  Sum_probs=103.0

Q ss_pred             CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh--hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      -+.++++++.++.+|. .++.++++|++++|.+..++..  +..+++|++|++++|.+++..   +..|..+++|++|++
T Consensus        10 ~~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE---PNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC---TTTTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC---HhHcCCcccCCEEEC
Confidence            3789999999999886 5567999999999999988764  889999999999999998863   345777899999999


Q ss_pred             cCCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCC
Q 018662          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPK  155 (352)
Q Consensus       104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~  155 (352)
                      ++|.+..++.  +..+++|++|++++|.+.+..+ ....+++|++|++++|.+..
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            9999998765  7788999999999999887643 33446777777777776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=4.9e-14  Score=114.56  Aligned_cols=125  Identities=21%  Similarity=0.234  Sum_probs=101.3

Q ss_pred             cEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcC---ccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcC
Q 018662          188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKG---FEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKL  262 (352)
Q Consensus       188 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l  262 (352)
                      +.++++++.+..+......+++.|++++|.++..+.   +..+++|++|++++|.++++  ..+..+++|++|++++|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence            567777776665543344588888999888887742   77889999999999999887  3578889999999999999


Q ss_pred             CCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          263 TLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       263 ~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +++  ..+..+++|+.|++++|.++.+.   ...+..+++|++|++++|+|.|++
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVM---PGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeC---HHHhhcCCCCCEEEeCCCCccCcC
Confidence            887  44788999999999999999653   335677899999999999999988

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=1.3e-13  Score=110.47  Aligned_cols=126  Identities=25%  Similarity=0.373  Sum_probs=101.0

Q ss_pred             CcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcC
Q 018662          187 LQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKL  262 (352)
Q Consensus       187 L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l  262 (352)
                      .+.++++++.+........++++.|++++|.++..+  .+..+++|++|++++|.+++++.  +..+++|++|++++|.+
T Consensus         9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            456777777766665555578888888888887775  36778899999999999888754  67888999999999999


Q ss_pred             CCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          263 TLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       263 ~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +++  ..+..+++|+.|++++|.++.++.   ..+..+++|++|++++|++.|.+
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeCH---HHhcCCcccCEEEecCCCeeccC
Confidence            887  346788999999999999987663   44567899999999999998887

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=1.3e-14  Score=115.37  Aligned_cols=127  Identities=20%  Similarity=0.210  Sum_probs=71.2

Q ss_pred             CCCcccEEEcCCCCCC--cchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCC-CCC-CccccC
Q 018662           44 FPTNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK-IPD-VSIFKK  119 (352)
Q Consensus        44 ~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~~  119 (352)
                      .+++|++|++++|.+.  .+|..+..+++|++|++++|.++..     ..+..+++|++|++++|.+.. +|. +..+++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            3466666666666666  5665566666666666666666553     344556666666666666665 443 334666


Q ss_pred             CcEEEccCCCccccc--CCcccccCcceEEccCCcCCCcc-----cccCCCCCcEEEcCCCcc
Q 018662          120 LSVFDVSFNEITSSH--GLSNVTDTLKELYVSKNEVPKME-----EIEHFHDLQILEFGSNRL  175 (352)
Q Consensus       120 L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~L~~L~l~~~~l  175 (352)
                      |++|++++|.+..++  .....+++|++|++++|.+....     .+..+++|++|++.+|..
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            666666666665543  22233455555555555544421     244445555555544443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=4.1e-15  Score=119.24  Aligned_cols=128  Identities=20%  Similarity=0.236  Sum_probs=82.9

Q ss_pred             CCCCCcEEEccCCcccee-cCCCC-CCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcC
Q 018662          183 NLTNLQELWLGRNRIKVV-NLCGL-KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVS  258 (352)
Q Consensus       183 ~~~~L~~L~l~~~~l~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~  258 (352)
                      .+++|+.|++++|.+... .+..+ ++|+.|++++|.++..+.+..+++|+.|++++|.++.++.  +..+++|++|+++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            344444444444444433 12222 3566666666666555556667777777777777776653  3567778888888


Q ss_pred             CCcCCCcc---cccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          259 SNKLTLVD---DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       259 ~n~l~~~~---~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      +|.++.++   .+..+++|+.|++++|+++.++......+..+++|+.|++++|+
T Consensus        97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            88777663   46677888888888888877665433445667888888888885

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=1.8e-14  Score=114.51  Aligned_cols=126  Identities=25%  Similarity=0.251  Sum_probs=86.2

Q ss_pred             CCCcEEEccCCccc--ee--cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCC-CCCC-CCCCCCcEEEcC
Q 018662          185 TNLQELWLGRNRIK--VV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK-MEGL-STLVNLHVLDVS  258 (352)
Q Consensus       185 ~~L~~L~l~~~~l~--~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~-~~~~~L~~L~l~  258 (352)
                      ++++.|++++|.+.  ..  .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+.+ ++.. ..+++|++|+++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            44555555555444  22  234455666666666666655556677777778887777776 4433 347778888888


Q ss_pred             CCcCCCc---ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          259 SNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       259 ~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      +|.++++   ..+..+++|+.|++++|.++.++......+..+++|++|++++|+
T Consensus       104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            8888775   456778888888888888887765444567778889999988884

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=2.8e-14  Score=110.98  Aligned_cols=104  Identities=25%  Similarity=0.241  Sum_probs=47.8

Q ss_pred             CCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCC-CCC-CCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEE
Q 018662          204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK-MEG-LSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLW  278 (352)
Q Consensus       204 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~  278 (352)
                      .+++|+.|++++|.++..+.+..+++|+.|++++|.+++ ++. +..+++|++|++++|+++++   ..+..+++|++|+
T Consensus        40 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           40 EFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             TCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred             hcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence            344444444444444444334444555555555555444 322 12244455555555555443   3344455555555


Q ss_pred             cCCCCCcchHHHHHHHhccccCccEeecc
Q 018662          279 LNDNQIESLESIVEAVAGSRETLTTIYLE  307 (352)
Q Consensus       279 l~~n~i~~~~~~~~~~~~~~~~L~~L~l~  307 (352)
                      +++|.++.++......+..+++|+.|+++
T Consensus       120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          120 LFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55555554443222333444555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=1.1e-14  Score=128.70  Aligned_cols=96  Identities=17%  Similarity=0.285  Sum_probs=61.9

Q ss_pred             CCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCc-EEEcCCCcCCCc--ccccCCCCCCeE
Q 018662          205 LKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLH-VLDVSSNKLTLV--DDIQNLSRLEDL  277 (352)
Q Consensus       205 ~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~-~L~l~~n~l~~~--~~~~~~~~L~~L  277 (352)
                      +++|+.+++++|.++.++  .|..|++|+.+++..| +..++  .|..+.+|+ .+++.+ .++.+  ..|..|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            566777777766666654  4666777777777665 55543  366666776 777766 55554  456667777777


Q ss_pred             EcCCCCCcchHHHHHHHhccccCccEee
Q 018662          278 WLNDNQIESLESIVEAVAGSRETLTTIY  305 (352)
Q Consensus       278 ~l~~n~i~~~~~~~~~~~~~~~~L~~L~  305 (352)
                      ++++|.++.++   ...+.+|++|+.++
T Consensus       303 ~l~~n~i~~I~---~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLG---DELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEEC---TTTTCTTCCCCEEE
T ss_pred             EeCCCccCccc---hhhhcCCcchhhhc
Confidence            77777776655   34566667777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=6.7e-14  Score=123.73  Aligned_cols=95  Identities=21%  Similarity=0.288  Sum_probs=80.2

Q ss_pred             CCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCc-EEECCCCCCCCCC--CCCCCCCCcE
Q 018662          183 NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALE-ELYLSHNGISKME--GLSTLVNLHV  254 (352)
Q Consensus       183 ~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~-~L~l~~n~l~~~~--~~~~~~~L~~  254 (352)
                      .+++|+.+++.+|.+...   .|..+.+|+.+++.++ ++.++  .|..|++|+ .+++.. .++.++  .|..+++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            378999999999877776   7888999999999987 66554  588999999 999988 677664  5889999999


Q ss_pred             EEcCCCcCCCc--ccccCCCCCCeEEc
Q 018662          255 LDVSSNKLTLV--DDIQNLSRLEDLWL  279 (352)
Q Consensus       255 L~l~~n~l~~~--~~~~~~~~L~~L~l  279 (352)
                      +++++|.++.+  ..|.++++|+.++.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999888  57889999998874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=2.5e-14  Score=114.63  Aligned_cols=129  Identities=22%  Similarity=0.307  Sum_probs=84.0

Q ss_pred             cccccCceeecCCCCCcCCCCCCCC-CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662           21 EIDLSNTVLDLTSFQLHDLDSVEFP-TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (352)
Q Consensus        21 ~~~~~l~~L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~   99 (352)
                      ..+.++++|+++++.++.++.+... ++|++|++++|.++.+ ..+..+++|++|++++|.++...   ...+..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG---EGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC---SCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccC---cchhhcCCCCC
Confidence            3456677777777777777654433 3777777777777766 45677777777777777776531   12235677777


Q ss_pred             EEEccCCCCCCCCC---CccccCCcEEEccCCCcccccCC----cccccCcceEEccCCcC
Q 018662          100 ELILRDNKLMKIPD---VSIFKKLSVFDVSFNEITSSHGL----SNVTDTLKELYVSKNEV  153 (352)
Q Consensus       100 ~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~  153 (352)
                      +|++++|.+..+|.   +..+++|+.|++++|++...+..    ...+++|+.|+++.|..
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            77777777776654   55667777777777777655442    33456666666655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.51  E-value=2.1e-15  Score=142.50  Aligned_cols=189  Identities=19%  Similarity=0.234  Sum_probs=136.6

Q ss_pred             CCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCc-------------cCccccccccccccCCCCcEEE-ccCCCC
Q 018662           43 EFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL-------------IDDAAIEPISRWDALAGLEELI-LRDNKL  108 (352)
Q Consensus        43 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~~~l~~L~~L~-l~~~~l  108 (352)
                      ...++|+.|++++|+++.+|..+.++++|++|+++++.             ..+.   .+..+..+++|+.|+ ++.+.+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~---~~~~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY---EKETLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG---HHHHHHHHHHHHHHCGGGHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC---CHHHHHHHHhcccCcchhhccc
Confidence            44678999999999999999999999999999987764             2221   223445566677776 444433


Q ss_pred             CCCCC-------Ccc--ccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc-ccccCCCCCcEEEcCCCccCCc
Q 018662          109 MKIPD-------VSI--FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM  178 (352)
Q Consensus       109 ~~l~~-------~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~  178 (352)
                      ..++.       +..  ...|+.|++++|.+.+++. ...+++|+.|++++|.+..+ ..++.+++|+.|++++|.++.+
T Consensus       423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l  501 (567)
T 1dce_A          423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC
Confidence            22211       111  1257888888888887765 55577888888888887774 5678888888888888888777


Q ss_pred             ccccCCCCCcEEEccCCcccee----cCCCCCCCCEEEcCCCcCCCCcC-----ccccccCcEEEC
Q 018662          179 ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSMKG-----FEECIALEELYL  235 (352)
Q Consensus       179 ~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l  235 (352)
                      +.++.+++|+.|++++|.+...    .+..+++|+.|++++|.+++.+.     +..+|+|+.|++
T Consensus       502 p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            7788888888888888877655    46678889999999988877643     224788888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=2.1e-14  Score=111.72  Aligned_cols=107  Identities=22%  Similarity=0.246  Sum_probs=52.9

Q ss_pred             ccCceeecCCCCCc--CCCCC-CCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662           24 LSNTVLDLTSFQLH--DLDSV-EFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (352)
Q Consensus        24 ~~l~~L~l~~~~l~--~~~~~-~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  100 (352)
                      +++++|+++++.++  .++.. ..+++|++|++++|.++.+ ..+..+++|++|++++|.+++..   +..+..+++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGL---EVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCT---HHHHHHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchH---HHHhhhCCCCCE
Confidence            44555555555555  33332 3345555555555555544 34455555555555555555421   112233555555


Q ss_pred             EEccCCCCCCCC---CCccccCCcEEEccCCCccccc
Q 018662          101 LILRDNKLMKIP---DVSIFKKLSVFDVSFNEITSSH  134 (352)
Q Consensus       101 L~l~~~~l~~l~---~~~~~~~L~~L~l~~~~~~~~~  134 (352)
                      |++++|.+..++   .+..+++|++|++++|.+.+.+
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence            555555555432   1444555555555555554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=3.5e-13  Score=107.97  Aligned_cols=127  Identities=28%  Similarity=0.381  Sum_probs=102.6

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      +.+.+++++++++.++. ..++++++|++++|+++.++.. +..+++|++|++++|.++...   ...+..+++|++|++
T Consensus         8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP---DGVFDKLTKLTILYL   83 (177)
T ss_dssp             ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEEC
T ss_pred             CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC---hhHccCCCccCEEEC
Confidence            45788999999998874 5668999999999999988765 688999999999999988752   234567899999999


Q ss_pred             cCCCCCCCCC--CccccCCcEEEccCCCcccccCCc-ccccCcceEEccCCcCCC
Q 018662          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPK  155 (352)
Q Consensus       104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~  155 (352)
                      ++|.+..++.  +..+++|++|++++|.+..++... ..+++|++|++++|.+..
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            9999998776  677899999999999888776543 346778888888777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.45  E-value=3.8e-12  Score=115.20  Aligned_cols=247  Identities=13%  Similarity=0.196  Sum_probs=161.7

Q ss_pred             CCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCc
Q 018662           45 PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLS  121 (352)
Q Consensus        45 ~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~  121 (352)
                      +..++.+.+.+ +++.|+.. |.++ +|+.+.+..+ ++.+.   ...|.. .+|+.+.+.. .+..++.  +..+++|+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~---~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIG---DMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEEC---TTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEEC---HHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence            35566666654 35556553 6664 6888888765 44432   234544 3688888875 5665554  77788888


Q ss_pred             EEEccCCCcccccCCcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccCCc--ccccCCCCCcEEEccCCcc
Q 018662          122 VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRI  197 (352)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~l  197 (352)
                      .+++..|.+..++...+.+.+|+.+.+..+ +..+  .++..+++|+.+.+..+ +..+  .++.+ .+|+.+.+.. .+
T Consensus       184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i  259 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV  259 (401)
T ss_dssp             EEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred             eeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence            888888887777665555678888888644 3332  45777888888888764 3211  23444 5788888743 33


Q ss_pred             cee---cCCCCCCCCEEEcCCCcCC-----CC--cCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc
Q 018662          198 KVV---NLCGLKCIKKISLQSNRLT-----SM--KGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV  265 (352)
Q Consensus       198 ~~~---~~~~~~~L~~L~l~~~~~~-----~~--~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~  265 (352)
                      ...   .|..|++|+.+.+.++...     .+  ..|..|++|+.+.+.. .+..+.  .|..+.+|+.+.+..+ ++.+
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence            333   7778888888888776554     22  2577888888888873 466553  4777788888888544 5555


Q ss_pred             --ccccCCCCCCeEEcCCCCCcchHHHHHHHhcccc-CccEeeccCC
Q 018662          266 --DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE-TLTTIYLENN  309 (352)
Q Consensus       266 --~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~-~L~~L~l~~n  309 (352)
                        ..|..+ +|+.+++.+|.+..++   ...+..++ +++.|++..+
T Consensus       338 ~~~aF~~~-~L~~l~l~~n~~~~l~---~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          338 NFSAFNNT-GIKEVKVEGTTPPQVF---EKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             CTTSSSSS-CCCEEEECCSSCCBCC---CSSCCCSCTTCCEEEECGG
T ss_pred             cHHhCCCC-CCCEEEEcCCCCcccc---cccccCCCCCccEEEeCHH
Confidence              567777 8888888888777654   23445553 5677776665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.39  E-value=2.5e-11  Score=109.81  Aligned_cols=255  Identities=11%  Similarity=0.161  Sum_probs=177.3

Q ss_pred             cccccccCceeecCCCCCcCCCCCCC-CCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCC
Q 018662           19 AVEIDLSNTVLDLTSFQLHDLDSVEF-PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALA   96 (352)
Q Consensus        19 ~~~~~~~l~~L~l~~~~l~~~~~~~~-~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~   96 (352)
                      ++.....++.+.+.+ .++.++...| -.+|+.+.+..+ ++.++.. |.++ +|+.+.+.. .++.+   ....|..++
T Consensus       108 ~~~~~~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I---~~~aF~~c~  180 (401)
T 4fdw_A          108 LTEILKGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQL---KEDIFYYCY  180 (401)
T ss_dssp             EEEECSSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEE---CSSTTTTCT
T ss_pred             EEEecCCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEe---hHHHhhCcc
Confidence            344445666666654 3555543332 247888888766 7777664 6664 689998886 45544   234677888


Q ss_pred             CCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCC
Q 018662           97 GLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGS  172 (352)
Q Consensus        97 ~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~  172 (352)
                      +|+.+++..+.+..++. .....+|+.+.+..+ +..+... +..+.+|+.+.+..+ +..+  .++.. .+|+.+.+..
T Consensus       181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~  257 (401)
T 4fdw_A          181 NLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN  257 (401)
T ss_dssp             TCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET
T ss_pred             cCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC
Confidence            99999998888888776 333678888888744 5555443 334778999988764 3332  33555 6788888854


Q ss_pred             CccCC--cccccCCCCCcEEEccCCccc--------eecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCC
Q 018662          173 NRLRV--MENLQNLTNLQELWLGRNRIK--------VVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGI  240 (352)
Q Consensus       173 ~~l~~--~~~~~~~~~L~~L~l~~~~l~--------~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l  240 (352)
                       .+..  ...+.+|++|+.+.+.++.+.        ...|..|++|+.+.+.. .++.++  .|..|++|+.+.+..+ +
T Consensus       258 -~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l  334 (401)
T 4fdw_A          258 -GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V  334 (401)
T ss_dssp             -TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred             -CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence             3432  345788999999999877643        22788899999999984 465553  6888999999999654 6


Q ss_pred             CCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCC-CCCCeEEcCCCCCcch
Q 018662          241 SKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNL-SRLEDLWLNDNQIESL  287 (352)
Q Consensus       241 ~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~-~~L~~L~l~~n~i~~~  287 (352)
                      +.+.  .|..+ +|+.+.+.+|....+  ..+..+ ..++.+.+-.+.+...
T Consensus       335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y  385 (401)
T 4fdw_A          335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKY  385 (401)
T ss_dssp             CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHH
T ss_pred             cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHHh
Confidence            6553  57778 999999999988766  456666 4788999988775543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=2.9e-12  Score=101.86  Aligned_cols=105  Identities=28%  Similarity=0.362  Sum_probs=89.9

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      +.+.++++++.++.+|. .+++++++|++++|.+++++ ..|.++++|++|++++|.++...   ...|..+++|++|++
T Consensus        10 ~~~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP---AGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC---hhhccCCCCCCEEEC
Confidence            46789999999999886 45799999999999999885 45899999999999999998753   334677899999999


Q ss_pred             cCCCCCCCCC--CccccCCcEEEccCCCcccc
Q 018662          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSS  133 (352)
Q Consensus       104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~  133 (352)
                      ++|.+..++.  +..+++|++|++++|++...
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999998876  77899999999999988654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=3.8e-12  Score=101.14  Aligned_cols=106  Identities=30%  Similarity=0.389  Sum_probs=84.2

Q ss_pred             CCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCC
Q 018662          207 CIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDN  282 (352)
Q Consensus       207 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n  282 (352)
                      ..+.++++++.++.+|.- -.+.++.|++++|.+++++  .+..+++|++|++++|+++++  ..+..+++|++|++++|
T Consensus        10 ~~~~l~~s~n~l~~ip~~-~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTG-IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             ETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEeCCCCcCccCcc-CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            457788888888877632 2478888999999888874  377888899999999998887  34678889999999999


Q ss_pred             CCcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662          283 QIESLESIVEAVAGSRETLTTIYLENNPQNLQII  316 (352)
Q Consensus       283 ~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  316 (352)
                      .|+.++.   ..+..+++|++|++++|++.|.+.
T Consensus        89 ~l~~~~~---~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPR---GAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCT---TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCH---HHhcCCCCCCEEEeCCCCCCCCch
Confidence            9987663   446778899999999999988873

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=5.2e-12  Score=100.75  Aligned_cols=106  Identities=27%  Similarity=0.405  Sum_probs=90.0

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      ..+.++++++.++.+|. .++++|++|++++|.+++++ ..|.++++|++|++++|.++..   +...|..+++|++|++
T Consensus        13 ~~~~l~~~~n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i---~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPA-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI---PTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             CSSEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEEC
T ss_pred             CCcEEEeCCCCCCccCC-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc---ChhHhCCcchhhEEEC
Confidence            34789999999999886 55699999999999999885 4588999999999999999885   2234567899999999


Q ss_pred             cCCCCCCCCC--CccccCCcEEEccCCCccccc
Q 018662          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSH  134 (352)
Q Consensus       104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~  134 (352)
                      ++|.+..++.  +..+++|++|++++|++....
T Consensus        89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            9999998886  778999999999999887543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=1.2e-11  Score=98.71  Aligned_cols=105  Identities=34%  Similarity=0.423  Sum_probs=79.7

Q ss_pred             CCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCC
Q 018662          208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQ  283 (352)
Q Consensus       208 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~  283 (352)
                      -+.++++++.++.+|.- -.+.|+.|++++|++.+++  .+..+++|++|++++|+++++  ..+..+++|+.|++++|.
T Consensus        14 ~~~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SSEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEeCCCCCCccCCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            36777777777777641 1377888888888888763  367788888888888888887  335778888888888888


Q ss_pred             CcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662          284 IESLESIVEAVAGSRETLTTIYLENNPQNLQII  316 (352)
Q Consensus       284 i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  316 (352)
                      |+.++.   ..+..+++|++|++++|++.|.+.
T Consensus        93 l~~l~~---~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           93 LKSIPR---GAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCT---TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             cceeCH---HHhccccCCCEEEeCCCCcccccc
Confidence            887663   346677888888888888888773

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.31  E-value=7.8e-11  Score=106.65  Aligned_cols=102  Identities=14%  Similarity=0.191  Sum_probs=54.1

Q ss_pred             cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCe
Q 018662          201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLED  276 (352)
Q Consensus       201 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~  276 (352)
                      .+..+..++.+......+.. ..+..+.+|+.+.+..+ ++.+.  .+..+.+|+.+++..+ ++.+  ..|.+|.+|+.
T Consensus       271 ~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~  347 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSN  347 (394)
T ss_dssp             TTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCE
Confidence            34444444444443322111 13445566666666443 33332  3556666777776533 4444  45666677777


Q ss_pred             EEcCCCCCcchHHHHHHHhccccCccEeeccCC
Q 018662          277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENN  309 (352)
Q Consensus       277 L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n  309 (352)
                      +.+..+ ++.++   ..++..|++|+.+++..+
T Consensus       348 i~lp~~-l~~I~---~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          348 INFPLS-LRKIG---ANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECCCTT-CCEEC---TTTBTTCTTCCEEEEEGG
T ss_pred             EEECcc-ccEeh---HHHhhCCCCCCEEEECCC
Confidence            777655 55443   335666777777766543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.29  E-value=1.2e-11  Score=120.52  Aligned_cols=107  Identities=22%  Similarity=0.189  Sum_probs=73.8

Q ss_pred             CCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcEE
Q 018662           45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF  123 (352)
Q Consensus        45 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L  123 (352)
                      ++.|++|+|++|.+..+|..+.++++|++|+|++|.++.    .+..+..+++|++|+|++|.+..+|. +..+++|++|
T Consensus       223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~----lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE----LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSC----CCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcc----cChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            466777777777777777666677777777777777663    22345667777777777777777765 6667777777


Q ss_pred             EccCCCcccccCCcccccCcceEEccCCcCCC
Q 018662          124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPK  155 (352)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  155 (352)
                      ++++|.+..++..+..+++|+.|++++|.+..
T Consensus       299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             ECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            77777776666555556777777777777664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=6.4e-14  Score=114.47  Aligned_cols=123  Identities=24%  Similarity=0.339  Sum_probs=84.8

Q ss_pred             cccEEEcCCC--CCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcEE
Q 018662           47 NLTELDLTAN--RLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF  123 (352)
Q Consensus        47 ~L~~L~l~~~--~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L  123 (352)
                      .++...+.+.  .++.+|..+..+++|++|++++|.++..     +.+..+++|++|++++|.+..+|. +..+++|++|
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-----~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-----SSLSGMENLRILSLGRNLIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-----CCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-----cccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence            4555555554  5556666788888888888888887763     156667888888888888877776 4556778888


Q ss_pred             EccCCCcccccCCcccccCcceEEccCCcCCCcc---cccCCCCCcEEEcCCCcc
Q 018662          124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME---EIEHFHDLQILEFGSNRL  175 (352)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~l  175 (352)
                      ++++|.+.+++ ....+++|++|++++|.+....   .+..+++|+++++.+|.+
T Consensus        99 ~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           99 WISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            88888777654 2334667777777777766532   356666666666666655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.28  E-value=8.8e-12  Score=121.35  Aligned_cols=149  Identities=21%  Similarity=0.181  Sum_probs=94.0

Q ss_pred             ccCceeecCCCCCcCCCCCC-CCCc-----ccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCC
Q 018662           24 LSNTVLDLTSFQLHDLDSVE-FPTN-----LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG   97 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~~-~~~~-----L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~   97 (352)
                      +.++.|++.++.+...+... ....     +..+++..+.+...+..+..++.|+.|+|++|.+..+    ...+..+++
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l----~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNI----SANIFKYDF  248 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCC----CGGGGGCCS
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCC----ChhhcCCCC
Confidence            45788888888887754311 1122     3333333444444455688999999999999998863    234457899


Q ss_pred             CcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc-ccccCCCCCcEEEcCCCcc
Q 018662           98 LEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRL  175 (352)
Q Consensus        98 L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~l  175 (352)
                      |++|+|++|.+..+|. +..+++|++|++++|.+..++..+..+.+|++|++++|.+..+ ..++.+++|++|++++|.+
T Consensus       249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence            9999999999999987 8899999999999999998877777789999999999998874 4589999999999999988


Q ss_pred             C
Q 018662          176 R  176 (352)
Q Consensus       176 ~  176 (352)
                      .
T Consensus       329 ~  329 (727)
T 4b8c_D          329 E  329 (727)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.26  E-value=2.9e-13  Score=110.59  Aligned_cols=106  Identities=28%  Similarity=0.459  Sum_probs=49.7

Q ss_pred             cccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcC
Q 018662           92 WDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFG  171 (352)
Q Consensus        92 ~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  171 (352)
                      +..+++|++|++++|.+..+|.+..+++|++|++++|.+..++.....+++|++|++++|.+..++.+..+++|+.|+++
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~  123 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS  123 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEES
T ss_pred             HhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECC
Confidence            33444555555555544444444444555555555554444433333334455555555544444444444455555555


Q ss_pred             CCccCCcc---cccCCCCCcEEEccCCcc
Q 018662          172 SNRLRVME---NLQNLTNLQELWLGRNRI  197 (352)
Q Consensus       172 ~~~l~~~~---~~~~~~~L~~L~l~~~~l  197 (352)
                      +|.+...+   .+..+++|+.+++++|.+
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          124 NNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            55444321   244444555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.22  E-value=2.9e-10  Score=102.93  Aligned_cols=276  Identities=15%  Similarity=0.173  Sum_probs=178.7

Q ss_pred             ccccccccccCceeecCCCCCcCCCCCCC--CCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccc-------
Q 018662           16 PDQAVEIDLSNTVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAA-------   85 (352)
Q Consensus        16 ~~~~~~~~~~l~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~-------   85 (352)
                      .+.+|..+.+|+.+.+.. .++.++...|  |++|+.+++..+ ++.++.. |.+++.|+.+.+..+- ....       
T Consensus        63 g~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~i~~~aF~~~  139 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KSIGVEAFKGC  139 (394)
T ss_dssp             CTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CEECTTTTTTC
T ss_pred             HHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-eeecceeeecc
Confidence            466788888899999974 4777765444  688999999754 6666654 7788888877665331 1000       


Q ss_pred             -------c-----ccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccC
Q 018662           86 -------I-----EPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSK  150 (352)
Q Consensus        86 -------~-----~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~  150 (352)
                             +     .....|..+++|+.+.+..+ +..++.  +..+.+|+.+.+..+ +..+... +..+..|+.+.+..
T Consensus       140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             CCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred             cccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence                   0     01234677888999988654 233433  666777777777554 2222211 11233444433322


Q ss_pred             CcC---------------------CC--cccccCCCCCcEEEcCCCccC-CcccccCCCCCcEEEccCCccceecCCCCC
Q 018662          151 NEV---------------------PK--MEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQELWLGRNRIKVVNLCGLK  206 (352)
Q Consensus       151 ~~~---------------------~~--~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  206 (352)
                      +..                     ..  ...+..+..++.+.+..+... ....+..+..++.+......+....+..+.
T Consensus       218 ~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~  297 (394)
T 4fs7_A          218 SLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCS  297 (394)
T ss_dssp             TCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCT
T ss_pred             CceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccc
Confidence            211                     11  123455666777777655433 223466777788877776666555788899


Q ss_pred             CCCEEEcCCCcCCCC--cCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcC
Q 018662          207 CIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLN  280 (352)
Q Consensus       207 ~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~  280 (352)
                      +|+.+.+..+ ++.+  ..+..|.+|+.+++..+ ++.+.  .|..+.+|+.+.+..+ ++.+  ..+..|++|+.+++.
T Consensus       298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            9999999765 4444  35888999999999754 66553  5888999999999876 6665  678999999999997


Q ss_pred             CCCCcchHHHHHHHhccccCccEe
Q 018662          281 DNQIESLESIVEAVAGSRETLTTI  304 (352)
Q Consensus       281 ~n~i~~~~~~~~~~~~~~~~L~~L  304 (352)
                      .+ ++.+.    ..+.+|++|+.+
T Consensus       375 ~~-~~~~~----~~F~~c~~L~~I  393 (394)
T 4fs7_A          375 KR-LEQYR----YDFEDTTKFKWI  393 (394)
T ss_dssp             GG-GGGGG----GGBCTTCEEEEE
T ss_pred             CC-CEEhh----heecCCCCCcEE
Confidence            55 33332    357888888875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.14  E-value=8.1e-09  Score=93.35  Aligned_cols=273  Identities=12%  Similarity=0.219  Sum_probs=142.6

Q ss_pred             cCceeecCCCCCcCCCCCC--CCCcccEEEcCCC---CCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCC
Q 018662           25 SNTVLDLTSFQLHDLDSVE--FPTNLTELDLTAN---RLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL   98 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~---~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L   98 (352)
                      .|+.+.+... ++.+..-.  -|++|+.+.+..+   .++.+... |..|.+|+.+.+..+ ++.+   ....|..+.+|
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I---~~~aF~~c~~L  139 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI---DSEAFHHCEEL  139 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE---CTTTTTTCTTC
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee---hhhhhhhhccc
Confidence            3555555432 44443322  2456666666543   24455432 556666666555443 2222   12345556666


Q ss_pred             cEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCC-CcccccCCCCCcEEEcCCCcc
Q 018662           99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP-KMEEIEHFHDLQILEFGSNRL  175 (352)
Q Consensus        99 ~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~l  175 (352)
                      +.+.+... +..++.  +..+..|+.+.+..+ +..+....+....|+.+.+..+... ....+..+..+..........
T Consensus       140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~  217 (394)
T 4gt6_A          140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESY  217 (394)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSS
T ss_pred             ccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceeccccccc
Confidence            66666532 232332  555666666666543 3333333333455666665443211 123355555666555544322


Q ss_pred             CCccc---------------ccCCCCCcEEEccCCc--cceecCCCCCCCCEEEcCCCcCC-CCcCccccccCcEEECCC
Q 018662          176 RVMEN---------------LQNLTNLQELWLGRNR--IKVVNLCGLKCIKKISLQSNRLT-SMKGFEECIALEELYLSH  237 (352)
Q Consensus       176 ~~~~~---------------~~~~~~L~~L~l~~~~--l~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~  237 (352)
                      .....               ......+..+.+...-  +....+..+..|+.+.+...... +...+..++.|+.+.+. 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-  296 (394)
T 4gt6_A          218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-  296 (394)
T ss_dssp             CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-
T ss_pred             ccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCC-
Confidence            11110               1112223333332211  11115667777888877654221 11346677788888775 


Q ss_pred             CCCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662          238 NGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       238 n~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                      +.+..++  .|..+.+|+.+.+..+ ++.+  ..|..|.+|+.+.+-.+ ++.++   ..++.+|++|+.+++.++.
T Consensus       297 ~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~---~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          297 SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP---ESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC---GGGGTTCTTCCEEEESSCH
T ss_pred             CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh---HhHhhCCCCCCEEEECCce
Confidence            3454443  4667778888888653 5444  56777888888888544 55554   3457778888888887763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.07  E-value=1.7e-11  Score=109.87  Aligned_cols=172  Identities=20%  Similarity=0.198  Sum_probs=110.1

Q ss_pred             ccCcceEEccCCcCCCcc--c----cc-CCCCCcEEEcCCCccCCc--cc-ccCCCCCcEEEccCCcccee---c----C
Q 018662          140 TDTLKELYVSKNEVPKME--E----IE-HFHDLQILEFGSNRLRVM--EN-LQNLTNLQELWLGRNRIKVV---N----L  202 (352)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~--~----~~-~~~~L~~L~l~~~~l~~~--~~-~~~~~~L~~L~l~~~~l~~~---~----~  202 (352)
                      .+.|++|++++|.+....  .    +. ..++|++|++++|.+...  .. ...+++|+.|++++|.+...   .    +
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            568899999999877621  1    22 336899999999887521  12 23345788999999887654   1    1


Q ss_pred             -CCCCCCCEEEcCCCcCCCCc------CccccccCcEEECCCCCCCCC------CCCCCCCCCcEEEcCCCcCCCc----
Q 018662          203 -CGLKCIKKISLQSNRLTSMK------GFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV----  265 (352)
Q Consensus       203 -~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~----  265 (352)
                       ...++|++|++++|.++...      .+..+++|++|++++|.+.+.      ..+..+++|++|++++|.+++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             34678889999888876531      235678888888888887652      2345566788888888888754    


Q ss_pred             --ccccCCCCCCeEEcCCCCCcchHHHHHHHhcccc--CccEee--ccCCCc
Q 018662          266 --DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE--TLTTIY--LENNPQ  311 (352)
Q Consensus       266 --~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~--~L~~L~--l~~n~~  311 (352)
                        ..+...++|++|++++|.|++.............  .|+.+.  +.++.+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence              2344567888888888888864321111112112  166666  566644

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=6.5e-10  Score=98.76  Aligned_cols=103  Identities=24%  Similarity=0.210  Sum_probs=85.9

Q ss_pred             ceeecCCC-CCcCCCCCCCCCcccEEEcCC-CCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           27 TVLDLTSF-QLHDLDSVEFPTNLTELDLTA-NRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        27 ~~L~l~~~-~l~~~~~~~~~~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      ..++++++ .++.+|.+...++|++|+|++ |.++.++. .|.++++|++|+|++|.+++..   ...|..+++|++|+|
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA---PDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC---TTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC---HHHhcCCcCCCEEeC
Confidence            46788888 899998855667899999996 99998875 5899999999999999999863   345778999999999


Q ss_pred             cCCCCCCCCC--CccccCCcEEEccCCCcccc
Q 018662          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSS  133 (352)
Q Consensus       104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~  133 (352)
                      ++|.+..+|.  +..++ |+.|++.+|.+...
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            9999999886  44444 99999999988753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.04  E-value=2.6e-11  Score=108.58  Aligned_cols=149  Identities=17%  Similarity=0.233  Sum_probs=83.3

Q ss_pred             ccCCcEEEccCCCcccccC-----Ccc-cccCcceEEccCCcCCCc--cc-ccCCCCCcEEEcCCCccCCc--cc----c
Q 018662          117 FKKLSVFDVSFNEITSSHG-----LSN-VTDTLKELYVSKNEVPKM--EE-IEHFHDLQILEFGSNRLRVM--EN----L  181 (352)
Q Consensus       117 ~~~L~~L~l~~~~~~~~~~-----~~~-~~~~L~~L~l~~~~~~~~--~~-~~~~~~L~~L~l~~~~l~~~--~~----~  181 (352)
                      .+.|+.|++++|.+.....     ... ...+|++|++++|.+...  .. ...+++|++|++++|.+...  ..    +
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3456777777776654211     111 124677777777766541  11 12344667777777766421  11    1


Q ss_pred             -cCCCCCcEEEccCCcccee-------cCCCCCCCCEEEcCCCcCCCC------cCccccccCcEEECCCCCCCCC----
Q 018662          182 -QNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM----  243 (352)
Q Consensus       182 -~~~~~L~~L~l~~~~l~~~-------~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~l~~~----  243 (352)
                       ...+.|++|++++|.+...       .+...++|++|++++|.+...      ..+..+++|+.|++++|.+++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2356677777777766543       224566677777777766543      1244556677777777766542    


Q ss_pred             --CCCCCCCCCcEEEcCCCcCCCc
Q 018662          244 --EGLSTLVNLHVLDVSSNKLTLV  265 (352)
Q Consensus       244 --~~~~~~~~L~~L~l~~n~l~~~  265 (352)
                        ..+...++|++|++++|.+++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHH
Confidence              1233445677777777776543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.04  E-value=3e-08  Score=89.59  Aligned_cols=280  Identities=12%  Similarity=0.199  Sum_probs=175.9

Q ss_pred             CccccccccccCceeecCCCC---CcCCCCCC--CCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCcccccc
Q 018662           15 NPDQAVEIDLSNTVLDLTSFQ---LHDLDSVE--FPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEP   88 (352)
Q Consensus        15 ~~~~~~~~~~~l~~L~l~~~~---l~~~~~~~--~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~   88 (352)
                      ..+.+|.-+.+|+.+.+..+.   ++.+....  .+..|+.+.+..+ +..++.. |..+.+|+.+.+... +...   .
T Consensus        78 Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I---~  152 (394)
T 4gt6_A           78 IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSV---A  152 (394)
T ss_dssp             ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEE---C
T ss_pred             EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeee---c
Confidence            456777888899999887653   55554433  3677888777654 5666654 789999999999764 2222   2


Q ss_pred             ccccccCCCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCccc---------
Q 018662           89 ISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEE---------  158 (352)
Q Consensus        89 ~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------  158 (352)
                      -..|..+..|+.+.+..+ +..+.. .....+|+.+.+..+-..-....+..+..+...............         
T Consensus       153 ~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~  231 (394)
T 4gt6_A          153 DGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANG  231 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTS
T ss_pred             ccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeecccccc
Confidence            245677899999998754 444443 223456888887654322222233345666666555433222111         


Q ss_pred             ------ccCCCCCcEEEcCCCccC--CcccccCCCCCcEEEccCCcc--ceecCCCCCCCCEEEcCCCcCCCCc--Cccc
Q 018662          159 ------IEHFHDLQILEFGSNRLR--VMENLQNLTNLQELWLGRNRI--KVVNLCGLKCIKKISLQSNRLTSMK--GFEE  226 (352)
Q Consensus       159 ------~~~~~~L~~L~l~~~~l~--~~~~~~~~~~L~~L~l~~~~l--~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~  226 (352)
                            ......+..+.+... +.  ...++..|..|+.+.+.....  ....+..+.+|+.+.+.. .++.++  .|..
T Consensus       232 ~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~  309 (394)
T 4gt6_A          232 DYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAG  309 (394)
T ss_dssp             CEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred             cccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecC
Confidence                  112223344444322 21  224577889999999876533  223788899999999964 344443  5888


Q ss_pred             cccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCcc
Q 018662          227 CIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT  302 (352)
Q Consensus       227 ~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~  302 (352)
                      |.+|+.+.+..+ ++.+  ..|..+.+|+.+.+..+ ++.+  ..|.+|++|+.+++.++...      ...+..+.+|+
T Consensus       310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~------~~~~~~~~~L~  381 (394)
T 4gt6_A          310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ------WNAISTDSGLQ  381 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH------HHTCBCCCCC-
T ss_pred             CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee------hhhhhccCCCC
Confidence            999999999764 5555  35888999999999654 6666  67899999999999987532      13456788999


Q ss_pred             EeeccCCC
Q 018662          303 TIYLENNP  310 (352)
Q Consensus       303 ~L~l~~n~  310 (352)
                      .+.+..+.
T Consensus       382 ~i~i~~~~  389 (394)
T 4gt6_A          382 NLPVAPGS  389 (394)
T ss_dssp             --------
T ss_pred             EEEeCCCC
Confidence            99887763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.02  E-value=9.8e-10  Score=97.59  Aligned_cols=103  Identities=22%  Similarity=0.266  Sum_probs=88.3

Q ss_pred             cEEEcCCC-CCCcchhhhhcCCCCcEEeccC-CccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEEE
Q 018662           49 TELDLTAN-RLTSLDSRISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD  124 (352)
Q Consensus        49 ~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~  124 (352)
                      ..++++++ +++++|. +..+++|++|+|++ |.++..   ....|..+++|++|+|++|.+.++++  +..+++|++|+
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL---ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE---CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc---ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence            45789998 8999999 99999999999996 999886   33467889999999999999998775  78899999999


Q ss_pred             ccCCCcccccCCcccccCcceEEccCCcCCC
Q 018662          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPK  155 (352)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  155 (352)
                      +++|.+..+++.......|+.|++.+|.+..
T Consensus        87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence            9999999887655444459999999998765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.77  E-value=1.6e-06  Score=77.75  Aligned_cols=134  Identities=18%  Similarity=0.257  Sum_probs=88.5

Q ss_pred             ccCCCCCcEEEccCCc--cceecCCCCCCCCEEEcCCCcCCCC--cCccccccCcEEECCCCCCCCC--CCCCCCCCCcE
Q 018662          181 LQNLTNLQELWLGRNR--IKVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHV  254 (352)
Q Consensus       181 ~~~~~~L~~L~l~~~~--l~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~  254 (352)
                      +..+..++.+.+..+.  +....+..+..|+.+.+..+ ++.+  ..+..+..|+.+.+..+ +..+  ..+..+.+|+.
T Consensus       213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             cccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            4556667777665432  11125667778888887654 3333  24667788888887543 4443  24677888888


Q ss_pred             EEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHH
Q 018662          255 LDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQ  325 (352)
Q Consensus       255 L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  325 (352)
                      +.+.++.++.+  ..+.+|.+|+.+.+..+ ++.++   ..++.+|.+|+.+.+..+     +..+....|.+
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~---~~aF~~C~~L~~i~ip~~-----v~~I~~~aF~~  354 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ---VYAFKNCKALSTISYPKS-----ITLIESGAFEG  354 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC---TTTTTTCTTCCCCCCCTT-----CCEECTTTTTT
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH---HHHhhCCCCCCEEEECCc-----cCEEchhHhhC
Confidence            88888877766  56788888998888654 66554   346778888888887543     44556666653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.76  E-value=9.1e-07  Score=79.33  Aligned_cols=262  Identities=18%  Similarity=0.193  Sum_probs=162.9

Q ss_pred             CCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcE
Q 018662           45 PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSV  122 (352)
Q Consensus        45 ~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~  122 (352)
                      ..+|+.+.+.. .+++|+.. |.+|.+|+.+.+..+ ++.+   .-..|..+ +|+.+.+..+ +..++. .....+|+.
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~I---g~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~  117 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSI---GDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDD  117 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEE---CTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEe---chhhhcCC-CCceEECCce-eeEeccceeccCCccc
Confidence            35677777764 46677654 888888888888754 4443   22345555 5777766543 444443 122346888


Q ss_pred             EEccCCCcccccCCcccccCcceEEccCCcC-CCcccccCCCCCcEEEcCCCccC--------------CcccccCCCCC
Q 018662          123 FDVSFNEITSSHGLSNVTDTLKELYVSKNEV-PKMEEIEHFHDLQILEFGSNRLR--------------VMENLQNLTNL  187 (352)
Q Consensus       123 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~l~--------------~~~~~~~~~~L  187 (352)
                      +.+..+ +..+........+++.+.+..+.. -....+..+..++.+.+......              ....+..+..+
T Consensus       118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (379)
T 4h09_A          118 FEFPGA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG  196 (379)
T ss_dssp             EECCTT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred             ccCCCc-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence            877654 233333233333555555443211 11234556667777666543221              11123444555


Q ss_pred             cEEEccCCccc--eecCCCCCCCCEEEcCCCcCCCC--cCccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCc
Q 018662          188 QELWLGRNRIK--VVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNK  261 (352)
Q Consensus       188 ~~L~l~~~~l~--~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~  261 (352)
                      ..+.+......  ...+..+.+++.+.+..+ +...  ..+..+..|+.+.+..+ ++.+  ..+..+.+|+.+.+..+ 
T Consensus       197 ~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-  273 (379)
T 4h09_A          197 TEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-  273 (379)
T ss_dssp             SEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred             cccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence            56555443222  225667788999888654 2222  35778899999998765 5544  34677889999999653 


Q ss_pred             CCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHH
Q 018662          262 LTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQ  325 (352)
Q Consensus       262 l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  325 (352)
                      ++.+  ..+..|++|+.+.+.++.++.++   ...+..|.+|+.+.+..+     +..++...|.+
T Consensus       274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~---~~aF~~c~~L~~i~lp~~-----l~~I~~~aF~~  331 (379)
T 4h09_A          274 VKTVPYLLCSGCSNLTKVVMDNSAIETLE---PRVFMDCVKLSSVTLPTA-----LKTIQVYAFKN  331 (379)
T ss_dssp             CSEECTTTTTTCTTCCEEEECCTTCCEEC---TTTTTTCTTCCEEECCTT-----CCEECTTTTTT
T ss_pred             ceeccccccccccccccccccccccceeh---hhhhcCCCCCCEEEcCcc-----ccEEHHHHhhC
Confidence            5544  57889999999999999988776   457889999999999653     56668888875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=3.5e-08  Score=87.70  Aligned_cols=145  Identities=16%  Similarity=0.144  Sum_probs=79.7

Q ss_pred             cCCCCCcEEEcCCCc-cCCcccccCCCCCcEEEccCCcccee-----cCCCCCCCCEEEcCC--CcCC------CC-cCc
Q 018662          160 EHFHDLQILEFGSNR-LRVMENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQS--NRLT------SM-KGF  224 (352)
Q Consensus       160 ~~~~~L~~L~l~~~~-l~~~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~L~~L~l~~--~~~~------~~-~~~  224 (352)
                      ..+|+|+.|.+.++. +.. +.+ ..++|++|++..+.+...     ....+++|+.|+++.  +...      .+ +.+
T Consensus       169 ~~~P~L~~L~L~g~~~l~l-~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSI-GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBC-CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             hcCCCCcEEEEeCCCCcee-ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            445666666665542 221 122 256677777766665443     123567777777642  1111      11 111


Q ss_pred             --cccccCcEEECCCCCCCC-----CCCCCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchHHHH
Q 018662          225 --EECIALEELYLSHNGISK-----MEGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLESIV  291 (352)
Q Consensus       225 --~~~~~L~~L~l~~n~l~~-----~~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~~~~  291 (352)
                        ..+|+|+.|++.+|.+.+     +.....+++|++|+++.|.+++.      ..+..+++|+.|++++|.|++  +..
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d--~~~  324 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD--EMK  324 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH--HHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH--HHH
Confidence              246778888887776653     11123467788888888777653      233456778888888887774  322


Q ss_pred             HHHhccccCccEeeccCCC
Q 018662          292 EAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       292 ~~~~~~~~~L~~L~l~~n~  310 (352)
                      ..+...+  ...++++++.
T Consensus       325 ~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          325 KELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHc--CCEEEecCCc
Confidence            3222111  3557777764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.55  E-value=1.5e-07  Score=83.66  Aligned_cols=132  Identities=15%  Similarity=0.132  Sum_probs=89.5

Q ss_pred             ccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc--Cc--cccccCcEEECCC--CC------CCCCC-CC-
Q 018662          181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK--GF--EECIALEELYLSH--NG------ISKME-GL-  246 (352)
Q Consensus       181 ~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~--~~~~~L~~L~l~~--n~------l~~~~-~~-  246 (352)
                      +..+|+|+.|.++++.-........++|+.|.+..+.+....  .+  ..+|+|++|+++.  +.      +..+. .+ 
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             HhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            467789999999887311221123789999999988775432  22  3689999999853  21      11121 12 


Q ss_pred             -CCCCCCcEEEcCCCcCCCc-----ccccCCCCCCeEEcCCCCCcchHH-HHHHHhccccCccEeeccCCCcc
Q 018662          247 -STLVNLHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIESLES-IVEAVAGSRETLTTIYLENNPQN  312 (352)
Q Consensus       247 -~~~~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~~~~L~~L~l~~n~~~  312 (352)
                       ..+++|++|++.+|.+.+.     .....+++|+.|+++.|.+++... .+......+++|++|++++|.++
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence             3578999999999998642     112467899999999999986321 11111245799999999999654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=3.6e-08  Score=79.10  Aligned_cols=111  Identities=13%  Similarity=0.106  Sum_probs=74.4

Q ss_pred             CCCCCCCCEEEcCCC-cCCCC------cCccccccCcEEECCCCCCCCC------CCCCCCCCCcEEEcCCCcCCCc---
Q 018662          202 LCGLKCIKKISLQSN-RLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV---  265 (352)
Q Consensus       202 ~~~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~---  265 (352)
                      +...+.|++|++++| .+...      ..+...+.|++|++++|.+.+-      ..+...++|++|++++|.+++.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344566666666666 55432      1234566777777777777641      1234556788888888888753   


Q ss_pred             ---ccccCCCCCCeEEc--CCCCCcchH-HHHHHHhccccCccEeeccCCCcc
Q 018662          266 ---DDIQNLSRLEDLWL--NDNQIESLE-SIVEAVAGSRETLTTIYLENNPQN  312 (352)
Q Consensus       266 ---~~~~~~~~L~~L~l--~~n~i~~~~-~~~~~~~~~~~~L~~L~l~~n~~~  312 (352)
                         ..+...++|++|++  ++|.|++-. ..+...+..+++|++|++++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               45667788999999  889988632 123445566789999999999643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=3.3e-07  Score=77.40  Aligned_cols=80  Identities=25%  Similarity=0.447  Sum_probs=50.4

Q ss_pred             ccccCcEEECCCCCCCCCCCCC----CCCCCcEEEcCCCcCCCcccccCCC--CCCeEEcCCCCCcc----hHHHHHHHh
Q 018662          226 ECIALEELYLSHNGISKMEGLS----TLVNLHVLDVSSNKLTLVDDIQNLS--RLEDLWLNDNQIES----LESIVEAVA  295 (352)
Q Consensus       226 ~~~~L~~L~l~~n~l~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~~~--~L~~L~l~~n~i~~----~~~~~~~~~  295 (352)
                      .++.|+.|++++|.+++++.+.    .+++|+.|+|++|++++++.+..+.  +|++|++++|++..    .+.......
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            4667777777777777655432    5677777777777777664344343  77777777777763    223333455


Q ss_pred             ccccCccEee
Q 018662          296 GSRETLTTIY  305 (352)
Q Consensus       296 ~~~~~L~~L~  305 (352)
                      ..+|+|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            6667777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.37  E-value=1.3e-07  Score=75.75  Aligned_cols=107  Identities=22%  Similarity=0.152  Sum_probs=76.6

Q ss_pred             ccCCCCCcEEEccCC-cccee-------cCCCCCCCCEEEcCCCcCCCC------cCccccccCcEEECCCCCCCCC---
Q 018662          181 LQNLTNLQELWLGRN-RIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM---  243 (352)
Q Consensus       181 ~~~~~~L~~L~l~~~-~l~~~-------~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~l~~~---  243 (352)
                      +...+.|++|++++| .+...       .+...++|++|++++|.+...      ..+...+.|++|++++|.+.+.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            345566667777666 55543       345567788888888877653      1244567899999999988762   


Q ss_pred             ---CCCCCCCCCcEEEc--CCCcCCCc------ccccCCCCCCeEEcCCCCCcch
Q 018662          244 ---EGLSTLVNLHVLDV--SSNKLTLV------DDIQNLSRLEDLWLNDNQIESL  287 (352)
Q Consensus       244 ---~~~~~~~~L~~L~l--~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~  287 (352)
                         ..+...++|++|++  ++|.++..      ..+...++|++|++++|.+..-
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence               34667788999999  88998764      4456678999999999998753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.12  E-value=1.4e-06  Score=68.36  Aligned_cols=80  Identities=8%  Similarity=0.135  Sum_probs=53.4

Q ss_pred             ccCcEEECCCCCCCC--CCCCCCCCCCcEEEcCCCc-CCCc--ccccC----CCCCCeEEcCCCC-CcchHHHHHHHhcc
Q 018662          228 IALEELYLSHNGISK--MEGLSTLVNLHVLDVSSNK-LTLV--DDIQN----LSRLEDLWLNDNQ-IESLESIVEAVAGS  297 (352)
Q Consensus       228 ~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~n~-l~~~--~~~~~----~~~L~~L~l~~n~-i~~~~~~~~~~~~~  297 (352)
                      ..|+.|++++|.+++  +..+..+++|++|++++|. +++.  ..+..    +++|++|++++|. |++  ..+.. +..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~-L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIA-LHH  137 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHH-GGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHH-Hhc
Confidence            457777777777654  4455677788888888875 5543  33443    2468888888875 775  33333 456


Q ss_pred             ccCccEeeccCCC
Q 018662          298 RETLTTIYLENNP  310 (352)
Q Consensus       298 ~~~L~~L~l~~n~  310 (352)
                      |++|++|++++++
T Consensus       138 ~~~L~~L~L~~c~  150 (176)
T 3e4g_A          138 FRNLKYLFLSDLP  150 (176)
T ss_dssp             CTTCCEEEEESCT
T ss_pred             CCCCCEEECCCCC
Confidence            7888888888887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.98  E-value=1.2e-05  Score=67.73  Aligned_cols=105  Identities=19%  Similarity=0.161  Sum_probs=70.1

Q ss_pred             CCCCcccE--EEcCCCCCCcchhh----hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCcc
Q 018662           43 EFPTNLTE--LDLTANRLTSLDSR----ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSI  116 (352)
Q Consensus        43 ~~~~~L~~--L~l~~~~l~~l~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~  116 (352)
                      ...+.|..  ++++.|....++..    ..++++|++|+|++|.+++... ....+..+++|+.|+|++|.+..+..+..
T Consensus       138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~-l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~  216 (267)
T 3rw6_A          138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNLSGNELKSERELDK  216 (267)
T ss_dssp             GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGG-GTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred             CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCcc-chhHHhhCCCCCEEECCCCccCCchhhhh
Confidence            33445554  66677755544432    2578899999999998887421 11234578899999999998887755555


Q ss_pred             cc--CCcEEEccCCCcccccC--------CcccccCcceEEc
Q 018662          117 FK--KLSVFDVSFNEITSSHG--------LSNVTDTLKELYV  148 (352)
Q Consensus       117 ~~--~L~~L~l~~~~~~~~~~--------~~~~~~~L~~L~l  148 (352)
                      +.  +|++|++++|++....+        ....+++|+.|+-
T Consensus       217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            55  89999999998875221        2334778887754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=4e-06  Score=65.77  Aligned_cols=86  Identities=14%  Similarity=0.234  Sum_probs=64.4

Q ss_pred             CCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCC-CcchHHHHHHHhcc---ccCccEeeccCCCccccccccCCccH
Q 018662          250 VNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQ-IESLESIVEAVAGS---RETLTTIYLENNPQNLQIILLPSDKF  323 (352)
Q Consensus       250 ~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~  323 (352)
                      ..|+.||++++.+++.  ..+..+++|+.|++++|. |++  ..+..+...   +++|++|++++|+   .+   .+..+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD--~gL~~L~~~~~~~~~L~~L~Ls~C~---~I---TD~Gl  132 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLENLQKSMLEMEIISCG---NV---TDKGI  132 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH--HHHHHHHTCHHHHHHCCEEEEESCT---TC---CHHHH
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH--HHHHHHHhcccccCCCCEEEcCCCC---cC---CHHHH
Confidence            4699999999998765  667899999999999996 775  444444332   5689999999997   44   22223


Q ss_pred             HHHHHHHHHhhhhccCceeceeeeecc
Q 018662          324 SQIYSRLILMYFFRSHSVLGFSFCQDY  350 (352)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (352)
                      ..       +.-++++..+++++|...
T Consensus       133 ~~-------L~~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          133 IA-------LHHFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             HH-------GGGCTTCCEEEEESCTTC
T ss_pred             HH-------HhcCCCCCEEECCCCCCC
Confidence            32       233799999999999754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.56  E-value=8.1e-05  Score=55.53  Aligned_cols=58  Identities=21%  Similarity=0.229  Sum_probs=35.3

Q ss_pred             EEEcCCCcCC--CcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          254 VLDVSSNKLT--LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       254 ~L~l~~n~l~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      .++.+++.++  .++. .-.++|+.|+|++|.|+.++.   ..+..+++|+.|+|++|||.|++
T Consensus        12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPP---GLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCT---TTGGGCTTCCEEECCSSCCBCSG
T ss_pred             EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccCh---hhhhhccccCEEEecCCCeeccC
Confidence            4555555555  4421 112356777777777776652   34556677777777777777776

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.55  E-value=0.00017  Score=53.80  Aligned_cols=55  Identities=35%  Similarity=0.432  Sum_probs=47.8

Q ss_pred             ceeecCCCCCc--CCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccC
Q 018662           27 TVLDLTSFQLH--DLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLID   82 (352)
Q Consensus        27 ~~L~l~~~~l~--~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~   82 (352)
                      ..++.+++.++  .+|. .+++++++|+|++|.|+.++.. |..+++|++|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            58899999998  7775 6888999999999999999876 788999999999999765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.36  E-value=0.00013  Score=58.28  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=70.6

Q ss_pred             CCCCCCCEEEcCCC-cCCCC------cCccccccCcEEECCCCCCCCC------CCCCCCCCCcEEEcCCCcCCCc----
Q 018662          203 CGLKCIKKISLQSN-RLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV----  265 (352)
Q Consensus       203 ~~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~----  265 (352)
                      ..-+.|+.|+++++ .+...      ..+.....|+.|++++|.+.+.      ..+.....|++|+|+.|.|+..    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34456777777664 54432      1244567788888888877652      1244557788888888888754    


Q ss_pred             --ccccCCCCCCeEEcCCC---CCcchH-HHHHHHhccccCccEeeccCCC
Q 018662          266 --DDIQNLSRLEDLWLNDN---QIESLE-SIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       266 --~~~~~~~~L~~L~l~~n---~i~~~~-~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                        +.+..-+.|++|++++|   .+..-. ..+...+...+.|+.|+++.|.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence              44566677999999865   344321 1244556667889999998874

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.99  E-value=0.00058  Score=54.48  Aligned_cols=85  Identities=13%  Similarity=0.132  Sum_probs=64.4

Q ss_pred             cccccCcEEECCCC-CCCCC------CCCCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchHH-H
Q 018662          225 EECIALEELYLSHN-GISKM------EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLES-I  290 (352)
Q Consensus       225 ~~~~~L~~L~l~~n-~l~~~------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~~-~  290 (352)
                      ..-+.|+.|+++++ ++..-      ..+.....|+.|+|++|.+.+.      +.+..-+.|+.|+|++|.|++-.. .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            45678999999985 77641      2456778899999999999755      345566889999999999996431 2


Q ss_pred             HHHHhccccCccEeeccCC
Q 018662          291 VEAVAGSRETLTTIYLENN  309 (352)
Q Consensus       291 ~~~~~~~~~~L~~L~l~~n  309 (352)
                      +...+...+.|++|+|++|
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence            3344566678999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-13
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-11
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-12
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-10
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-09
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-09
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-07
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.0 bits (227), Expect = 2e-21
 Identities = 46/192 (23%), Positives = 96/192 (50%), Gaps = 2/192 (1%)

Query: 92  WDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKN 151
              L  LE LI  +N++  I  + I   L    ++ N++     L+++T  L +L ++ N
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANN 251

Query: 152 EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGLKCIKK 210
           ++  +  +     L  L+ G+N++  +  L  LT L  L L  N+++ +  +  LK +  
Sbjct: 252 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 211 ISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQN 270
           ++L  N ++ +        L+ L+ ++N +S +  L+ L N++ L    N+++ +  + N
Sbjct: 312 LTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLAN 371

Query: 271 LSRLEDLWLNDN 282
           L+R+  L LND 
Sbjct: 372 LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.2 bits (212), Expect = 2e-19
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 7/205 (3%)

Query: 106 NKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDL 165
           NK+  I  ++    L     + N+I+    L  +T  L EL ++ N++  +  +    +L
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLNGNQLKDIGTLASLTNL 243

Query: 166 QILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGLKCIKKISLQSNRLTSMKGF 224
             L+  +N++  +  L  LT L EL LG N+I  +  L GL  +  + L  N+L  +   
Sbjct: 244 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

Query: 225 EECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQI 284
                L  L L  N IS +  +S+L  L  L  ++NK++ V  + NL+ +  L    NQI
Sbjct: 304 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQI 363

Query: 285 ESLESIVEAVAGSRETLTTIYLENN 309
             L  +      +   +T + L + 
Sbjct: 364 SDLTPL-----ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.7 bits (190), Expect = 2e-16
 Identities = 65/328 (19%), Positives = 126/328 (38%), Gaps = 49/328 (14%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKL------- 74
           DL   T L      +  +D VE+  NLT+++ + N+LT +   + +L+ L  +       
Sbjct: 42  DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI 100

Query: 75  ----------SLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFD 124
                     +L    + +  I  I     L  L  L L  N +  I  +S    L    
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL 184
                       +  T       +S N+V  +  +    +L+ L   +N++  +  L  L
Sbjct: 161 FGNQVTDLKPLANLTTLERL--DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 218

Query: 185 TNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM 243
           TNL EL L  N++K +  L  L  +  + L +N+++++        L EL L  N IS +
Sbjct: 219 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI 278

Query: 244 EGLSTLVN----------------------LHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
             L+ L                        L  L +  N ++ +  + +L++L+ L+  +
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN 338

Query: 282 NQIESLESIVEAVAGSRETLTTIYLENN 309
           N++  + S+      +   +  +   +N
Sbjct: 339 NKVSDVSSL-----ANLTNINWLSAGHN 361

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 9e-16
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 29  LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEP 88
           L  T+ Q+ D+  +   TNL EL L  N+L  + + ++ L+NL  L L  N I +     
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISN----- 255

Query: 89  ISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYV 148
           ++    L  L EL L  N++  I  ++    L+  +++ N++       +    L  L +
Sbjct: 256 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTL 314

Query: 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGLKC 207
             N +  +  +     LQ L F +N++  + +L NLTN+  L  G N+I  +  L  L  
Sbjct: 315 YFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR 374

Query: 208 IKKISLQSN 216
           I ++ L   
Sbjct: 375 ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 2e-14
 Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 7/169 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             L L   QL D+ ++   TNLT+LDL  N++++L   +S L+ L +L L  N I +   
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN--- 277

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             IS    L  L  L L +N+L  I  +S  K L+   + FN I+    +S++T  L+ L
Sbjct: 278 --ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT-KLQRL 334

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
           + + N+V  +  + +  ++  L  G N++  +  L NLT + +L L   
Sbjct: 335 FFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 2e-10
 Identities = 57/245 (23%), Positives = 109/245 (44%), Gaps = 7/245 (2%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
               +  L    +T   S  + L  +  L   +  I    I+ +     L  L ++   +
Sbjct: 22  AEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKS--IDGVEY---LNNLTQINFSN 75

Query: 106 NKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDL 165
           N+L  I  +    KL    ++ N+I            L  L +  N++  ++ +++  +L
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 166 QILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFE 225
             LE  SN +  +  L  LT+LQ+L  G     +  L  L  ++++ + SN+++ +    
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 226 ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE 285
           +   LE L  ++N IS +  L  L NL  L ++ N+L  +  + +L+ L DL L +NQI 
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 254

Query: 286 SLESI 290
           +L  +
Sbjct: 255 NLAPL 259

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 7e-07
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 183 NLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS 241
            L    +  LG+  +   V+   L  +  +      + S+ G E    L ++  S+N ++
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 79

Query: 242 KMEGLSTLVNLHVLDVS 258
            +  L  L  L  + ++
Sbjct: 80  DITPLKNLTKLVDILMN 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 222 KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
               E +      L    ++     + L  +  L      +  +D ++ L+ L  +  ++
Sbjct: 19  TALAEKMKT---VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSN 75

Query: 282 NQIESLESI 290
           NQ+  +  +
Sbjct: 76  NQLTDITPL 84

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 2e-14
 Identities = 65/317 (20%), Positives = 118/317 (37%), Gaps = 33/317 (10%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83
              V+  +   L  +   + P +   LDL  N++T +      +L NL  L L  N I  
Sbjct: 11  HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
            +    +    L  LE L L  N+L ++P+  + K L    V  NEIT            
Sbjct: 70  ISPGAFAP---LVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQ 125

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLC 203
             +        K   IE+                    Q +  L  + +    I  +   
Sbjct: 126 MIVVELGTNPLKSSGIEN-----------------GAFQGMKKLSYIRIADTNITTIPQG 168

Query: 204 GLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEGLSTLVN--LHVLDVSS 259
               + ++ L  N++T +     +    L +L LS N IS ++  S      L  L +++
Sbjct: 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 260 NKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE---TLTTIYLENNPQNLQI 315
           NKL  V   + +   ++ ++L++N I ++ S      G      + + + L +NP  +Q 
Sbjct: 229 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP--VQY 286

Query: 316 ILLPSDKFSQIYSRLIL 332
             +    F  +Y R  +
Sbjct: 287 WEIQPSTFRCVYVRAAV 303

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.0 bits (162), Expect = 1e-13
 Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 5/214 (2%)

Query: 68  LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF 127
           L+N  K++  ++ + D     +++ D L G+  L      +  I  V     L   ++  
Sbjct: 18  LANAIKIAAGKSNVTD----TVTQAD-LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72

Query: 128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
           N+IT    L N+T   +                      +    +    V          
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS 247
                      +  L GL  ++ +S+ + +++ +        L  L    N IS +  L+
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 248 TLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
           +L NL  + + +N+++ V  + N S L  + L +
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.7 bits (143), Expect = 5e-11
 Identities = 43/231 (18%), Positives = 97/231 (41%), Gaps = 7/231 (3%)

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
           ++    AI  I    ALA   ++    + +      +    ++        +T+  G+  
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQY 61

Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNR-I 197
           + + L  L +  N++  +  +++   +  LE   N L+ +  +  L +++ L L   +  
Sbjct: 62  LNN-LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 198 KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDV 257
            V  L GL  ++ + L  N++T++        L+ L + +  +S +  L+ L  L  L  
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 258 SSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN 308
             NK++ +  + +L  L ++ L +NQI  +  +      +   L  + L N
Sbjct: 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSPL-----ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.3 bits (129), Expect = 3e-09
 Identities = 41/210 (19%), Positives = 94/210 (44%), Gaps = 8/210 (3%)

Query: 29  LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEP 88
           +      + D  +      +T L      +T+++  + +L+NL  L L+ N      I  
Sbjct: 24  IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDN-----QITD 77

Query: 89  ISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYV 148
           ++    L  + EL L  N L  +  ++  + +   D++  +IT    L+ +++  + LY+
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL-QVLYL 136

Query: 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGLKC 207
             N++  +  +    +LQ L  G+ ++  +  L NL+ L  L    N+I  +  L  L  
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPN 196

Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSH 237
           + ++ L++N+++ +        L  + L++
Sbjct: 197 LIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 34/193 (17%), Positives = 70/193 (36%), Gaps = 9/193 (4%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
           DL   T L      +  ++ V++  NL  L+L  N++T L    +     +       L 
Sbjct: 39  DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK 98

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
           + +AI  +     L      I     L  + ++ +         + + +     L  +  
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL-- 156

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VV 200
                 +   +V  +  + +   L  L+   N++  +  L +L NL E+ L  N+I  V 
Sbjct: 157 -----SIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS 211

Query: 201 NLCGLKCIKKISL 213
            L     +  ++L
Sbjct: 212 PLANTSNLFIVTL 224

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.1 bits (152), Expect = 2e-12
 Identities = 29/192 (15%), Positives = 74/192 (38%), Gaps = 5/192 (2%)

Query: 68  LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF 127
            +   K +L++  + D     +++ + L  ++++I  ++ +  +  +     ++   ++ 
Sbjct: 23  FAETIKDNLKKKSVTD----AVTQNE-LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG 77

Query: 128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
           N++T    L+N+ +                  +      +    +    +   +      
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS 247
                      +  L  L  +  +SL+ N+++ +        L+ LYLS N IS +  L+
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 197

Query: 248 TLVNLHVLDVSS 259
            L NL VL++ S
Sbjct: 198 GLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 34/196 (17%), Positives = 79/196 (40%), Gaps = 5/196 (2%)

Query: 88  PISRWDALAGLEELI---LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLK 144
           PI +  +     E I   L+   +      +    +     + ++I S  G+  + + + 
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VT 71

Query: 145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQELWLGRNRIKVVNLC 203
           +L+++ N++  ++ + +  +L  L    N+++ +                     +  L 
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263
            L  ++ + L +N++T +        L+ L L  N IS +  L+ L  L  L +S N ++
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 191

Query: 264 LVDDIQNLSRLEDLWL 279
            +  +  L  L+ L L
Sbjct: 192 DLRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 38/175 (21%), Positives = 86/175 (49%), Gaps = 2/175 (1%)

Query: 117 FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR 176
           F +    ++    +T +   + + +++ ++  + +++  ++ I++  ++  L    N+L 
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT 81

Query: 177 VMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSM-KGFEECIALEELYL 235
            ++ L NL NL  L+L  N++K ++        K     +   S   G      LE LYL
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141

Query: 236 SHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESI 290
            +N I+ +  LS L  L  L +  N+++ +  +  L++L++L+L+ N I  L ++
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRAL 196

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 216 NRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLE 275
            ++ S   F E I      L    ++     + L ++  +  +++ +  V  IQ L  + 
Sbjct: 15  KQIFSDDAFAETIKDN---LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVT 71

Query: 276 DLWLNDNQI 284
            L+LN N++
Sbjct: 72  KLFLNGNKL 80

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 7/166 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             +   +  +  +  +++  N+T+L L  N+LT        +  L  L     L  D   
Sbjct: 49  DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-------DIKPLANLKNLGWLFLDENK 101

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
                        + +  ++  +   +  +           N   +   + +    L  L
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 161

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWL 192
            +  N++  +  +     LQ L    N +  +  L  L NL  L L
Sbjct: 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 7/189 (3%)

Query: 68  LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF 127
           L+   K  L +  + D     +S+ D L  +  L      +  I  V     L+  + S 
Sbjct: 17  LAEKMKTVLGKTNVTD----TVSQTD-LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSN 71

Query: 128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
           N++T    L N+T  +    ++ N++  +  + +  +L  L   +N++  ++ L+NLTNL
Sbjct: 72  NQLTDITPLKNLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 188 QELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL 246
             L L  N I  +  L GL  +++++  SN++T +K       LE L +S N +S +  L
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVL 190

Query: 247 STLVNLHVL 255
           + L NL  L
Sbjct: 191 AKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 5e-09
 Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 2/196 (1%)

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDT 142
           D  I  I    ALA   + +L    +      +   +++        I S  G+  + + 
Sbjct: 5   DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN- 63

Query: 143 LKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNL 202
           L ++  S N++  +  +++   L  +   +N++  +  L NLTNL  L L  N+I  ++ 
Sbjct: 64  LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 123

Query: 203 CGLKC-IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNK 261
                 + ++ L SN ++ +       +L++L  S N ++ ++ L+ L  L  LD+SSNK
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK 183

Query: 262 LTLVDDIQNLSRLEDL 277
           ++ +  +  L+ LE L
Sbjct: 184 VSDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.4 bits (111), Expect = 5e-07
 Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 3/181 (1%)

Query: 111 IPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEF 170
             D +   +     +    +T +   +++ D +  L   +  +  ++ +E+ ++L  + F
Sbjct: 12  FTD-TALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYLNNLTQINF 69

Query: 171 GSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIA- 229
            +N+L  +  L+NLT L ++ +  N+I  +               N   +     + +  
Sbjct: 70  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129

Query: 230 LEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLES 289
           L  L LS N IS +  LS L +L  L+ SSN++T +  + NL+ LE L ++ N++  +  
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV 189

Query: 290 I 290
           +
Sbjct: 190 L 190

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 7/170 (4%)

Query: 29  LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEP 88
             L    + D  S      +T L      + S+D  + +L+NL +++   N + D     
Sbjct: 23  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLK 81

Query: 89  ISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYV 148
                        IL +N  +                 FN   +          L  L +
Sbjct: 82  NLTKL------VDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 135

Query: 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK 198
           S N +  +  +     LQ L F SN++  ++ L NLT L+ L +  N++ 
Sbjct: 136 SSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS 185

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 5/110 (4%)

Query: 166 QILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKG 223
           ++L      L V+ +L+ L  +  L L  NR++ +   L  L+C++ +    N L ++ G
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 224 FEECIALEELYLSHNGISK---MEGLSTLVNLHVLDVSSNKLTLVDDIQN 270
                 L+EL L +N + +   ++ L +   L +L++  N L   + IQ 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 8/112 (7%)

Query: 28  VLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIE 87
           VL L    L  L  +E    +T LDL+ NRL +L   ++ L  L+ L    N     A+E
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-----ALE 56

Query: 88  PISRWDALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSHGL 136
            +     L  L+EL+L +N+L +   +       +L + ++  N +    G+
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 8e-06
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIE 160
           L L    L  +  +     ++  D+S N + +          L+ L  S N +  ++ + 
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 161 HFHDLQILEFGSNRLR---VMENLQNLTNLQELWLGRNRI 197
           +   LQ L   +NRL+    ++ L +   L  L L  N +
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV-MENLQNLTNLQELWLGRNRIKVV-N 201
           + L+++  ++  +  +E    +  L+   NRLR     L  L  L+ L    N ++ V  
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 202 LCGLKCIKKISLQSNRLTSMKGFEE---CIALEELYLSHNGISKMEGL 246
           +  L  ++++ L +NRL      +    C  L  L L  N + + EG+
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 25/101 (24%)

Query: 233 LYLSHNGISKMEGLSTLVNLHVLDVSSNKLT-LVDDIQNLSRL----------------- 274
           L+L+H  ++ +  L  L+ +  LD+S N+L  L   +  L  L                 
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 275 -----EDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
                ++L L +N+++   +I      S   L  + L+ N 
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQP--LVSCPRLVLLNLQGNS 101

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 54/329 (16%), Positives = 103/329 (31%), Gaps = 38/329 (11%)

Query: 9   PSAEATNPDQAVE-----IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS 63
           P       + AV      +D     L+L +  L  L   E P +L  L  + N LT L  
Sbjct: 18  PPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPE 75

Query: 64  RISHLSNLKKL------------SLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKI 111
               L +L                L    + +  +E +      + L+ + + +N L K+
Sbjct: 76  LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 135

Query: 112 PDVSIFKKLS-VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEF 170
           PD+    +     +    E+     L  +T    +    K        +E       +  
Sbjct: 136 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 195

Query: 171 GSNRLRVMENLQNLTNLQELWLGRNRIKV---------VNLCGLKCIKKISLQSNRLTSM 221
               L+ +  L  +     L      +             L  L  + +     +   ++
Sbjct: 196 ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 255

Query: 222 KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
                 +     YL+ +            +L  L+VS+NKL  +       RLE L  + 
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA--LPPRLERLIASF 313

Query: 282 NQIESLESIVEAVAGSRETLTTIYLENNP 310
           N +  +  +        + L  +++E NP
Sbjct: 314 NHLAEVPELP-------QNLKQLHVEYNP 335

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 221 MKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLN 280
               +   +LEEL +S+N + ++  L     L  L  S N L  V ++     L+ L + 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPEL--PQNLKQLHVE 332

Query: 281 DNQIESLESIVEAVAGSRETLTTIYLEN 308
            N +     I        E++  + + +
Sbjct: 333 YNPLREFPDIP-------ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 44  FPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
            P +L EL+++ N+L  L    +    L++L    N + +         +    L++L +
Sbjct: 282 LPPSLEELNVSNNKLIELP---ALPPRLERLIASFNHLAEVP-------ELPQNLKQLHV 331

Query: 104 RDNKLMKIPDV 114
             N L + PD+
Sbjct: 332 EYNPLREFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 27/120 (22%)

Query: 161 HFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTS 220
                 +    ++   +        +L+EL +  N++  +                    
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP------------------- 300

Query: 221 MKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLN 280
                    LE L  S N ++++  L    NL  L V  N L    DI     +EDL +N
Sbjct: 301 ----ALPPRLERLIASFNHLAEVPELPQ--NLKQLHVEYNPLREFPDI--PESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 92  WDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKN 151
            D    LEEL + +NKL+++P  ++  +L     SFN +     +  +   LK+L+V  N
Sbjct: 280 CDLPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAE---VPELPQNLKQLHVEYN 334

Query: 152 EVPKM-EEIEHFHDLQI 167
            + +  +  E   DL++
Sbjct: 335 PLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 7e-04
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
             L++++ +L +L +   P  L  L  + N L  +        NLK+L +  N +
Sbjct: 287 EELNVSNNKLIELPA--LPPRLERLIASFNHLAEVP---ELPQNLKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLK 72
             L  +   L ++   E P NL +L +  N L         + +L+
Sbjct: 307 ERLIASFNHLAEVP--ELPQNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 213 LQSNRLTSMKGFEECIALEELYLSHNGISKMEGL-STLVNLHVLDVSSNKLTLVDDIQNL 271
           L +  +     +   +   EL L    I  +E L +TL     +D S N++  +D    L
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62

Query: 272 SRLEDLWLNDNQIES 286
            RL+ L +N+N+I  
Sbjct: 63  RRLKTLLVNNNRICR 77

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 7e-04
 Identities = 20/157 (12%), Positives = 51/157 (32%), Gaps = 15/157 (9%)

Query: 31  LTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPIS 90
           LT+  +             ELDL   ++  +++  + L     +    N I       + 
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-----KLD 57

Query: 91  RWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSK 150
            +  L  L+ L++ +N++ +I +        + ++      +++ L  +        +  
Sbjct: 58  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL----TNNSLVELG------DLDP 107

Query: 151 NEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
               K           +      RL V+  +  +  L
Sbjct: 108 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 2e-06
 Identities = 34/240 (14%), Positives = 67/240 (27%), Gaps = 15/240 (6%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83
           SN V      ++ ++ S + P N  EL     +L  +     S   +L+K+ + QN + +
Sbjct: 9   SNRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
                +           +   +N L   P+         + +  N               
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL--------- 118

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLC 203
               V K    +   ++   ++ I     N    +     +  L +  +        N  
Sbjct: 119 --PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT 176

Query: 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNK 261
            L  +      +        F        L +S   I  +   GL  L  L      + K
Sbjct: 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 13/260 (5%)

Query: 16  PDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKL 74
           P   V  +            L  +     P     + L  NR++ + +       NL  L
Sbjct: 3   PGACVCYNEPKVTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61

Query: 75  SLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVS-FNEITSS 133
            L  N++        +    L  L+       + +         +L    +         
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 134 HGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR--VMENLQNLTNLQE 189
            GL      L+ LY+  N +  +  +      +L  L    NR+        + L +L  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 190 LWLGRNR---IKVVNLCGLKCIKKISLQSNRLT--SMKGFEECIALEELYLSHNGISKME 244
           L L +NR   +       L  +  + L +N L+    +      AL+ L L+ N      
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 245 GLSTLV-NLHVLDVSSNKLT 263
               L   L     SS+++ 
Sbjct: 242 RARPLWAWLQKFRGSSSEVP 261

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 8e-06
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 14/95 (14%)

Query: 224 FEECIALEELYLSHNGISK------MEGLSTLVNLHVLDVSSNKLT------LVDDI-QN 270
            +    L  L+L+   +S          L    +L  LD+S+N L       LV+ + Q 
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 271 LSRLEDLWLNDNQI-ESLESIVEAVAGSRETLTTI 304
              LE L L D    E +E  ++A+   + +L  I
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 47  NLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRW-DALAGLEELIL 103
           ++  LD+    L+       +  L   + + L    + +A  + IS        L EL L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 104 RDNKLMKIPDVSIFKKLS 121
           R N+L  +    + + L 
Sbjct: 63  RSNELGDVGVHCVLQGLQ 80

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 4e-04
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 27  TVLDLTSFQLHDLDSVEFPT---NLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQ 78
             LD+   +L D    E          + L    LT      + S +     L +L+LR 
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 79  NLIDDAAIEPISRW--DALAGLEELILRDNKLM 109
           N + D  +  + +        +++L L++  L 
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 5e-04
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 251 NLHVLDVSSNKLT------LVDDIQNLSRLEDLWLNDNQI--ESLESIVEAVAGSRETLT 302
            L VL ++   ++      L   +     L +L L++N +    +  +VE+V      L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 303 TIYLENNPQNLQI 315
            + L +   + ++
Sbjct: 430 QLVLYDIYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 250 VNLHVLDVSSNKLT---LVDDIQNLSRLEDLWLNDNQI--ESLESIVEAVAGSRETLTTI 304
           +++  LD+   +L+     + +  L + + + L+D  +     + I  A+  +   L  +
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-ALAEL 60

Query: 305 YLENN 309
            L +N
Sbjct: 61  NLRSN 65

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 43  EFPTNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDDAAIEPISR--WDAL 95
           +  + L  L L    ++     SL + +    +L++L L  N + DA I  +        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 96  AGLEELILRDNKL 108
             LE+L+L D   
Sbjct: 426 CLLEQLVLYDIYW 438

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 8e-06
 Identities = 43/259 (16%), Positives = 76/259 (29%), Gaps = 15/259 (5%)

Query: 40  DSVEFPTNLTELDLTANRLT---SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA 96
           D+      +  LDL+   L     + S +++L  L  L +         I P        
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 97  GLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM 156
               +   +        +S  K L   D S+N ++ +   S  +                
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 157 EEIEHFHDLQILEF----GSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKIS 212
              + +     L        NRL                     +   +   L    K +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 213 LQSNRLTSMKGFEECIAL-----EELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLT-L 264
            + +   +   F+            L L +N I     +GL+ L  LH L+VS N L   
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 265 VDDIQNLSRLEDLWLNDNQ 283
           +    NL R +     +N+
Sbjct: 284 IPQGGNLQRFDVSAYANNK 302

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 9   PSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISH 67
           P  E +     +E++      +LT+         + P + T L L+ N L +     +  
Sbjct: 2   PICEVSKVASHLEVNCDK--RNLTAL------PPDLPKDTTILHLSENLLYTFSLATLMP 53

Query: 68  LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF 127
            + L +L+L     D A +  +     L  L  L L  N+L  +P +             
Sbjct: 54  YTRLTQLNL-----DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108

Query: 128 NEITSS---HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM---ENL 181
               +S     L  + +  +              +            +N          L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168

Query: 182 QNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRL 218
             L NL  L L  N +  +     G   +    L  N  
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 22/225 (9%)

Query: 88  PISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS--SHGLSNVTDTLKE 145
           PI     +A   E+      L  +P   + K  ++  +S N + +     L   T  L +
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYT-RLTQ 59

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGL 205
           L + + E+ K++       L            ++   N      L         V     
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGT----------LDLSHNQLQSLPLLGQTLPALTVLDVSF 109

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV 265
             +  + L + R             E   L       +   +  +    L  ++      
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPG----LLTPTPKLEKLSLANNNLTELPA 165

Query: 266 DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
             +  L  L+ L L +N + ++             L   +L  NP
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKG----FFGSHLLPFAFLHGNP 206

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 21/145 (14%), Positives = 56/145 (38%), Gaps = 24/145 (16%)

Query: 169 EFGSNRLRVMEN-LQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKG-FE 225
           E    ++  ++  +    +  +  L    ++   +L        ++ +S+   +++   E
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 226 ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE 285
               L  L LS+N + +++ +S++                  +Q    L+ L L+ N+++
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSI------------------VQKAPNLKILNLSGNELK 104

Query: 286 SLESIVEAVAGSRETLTTIYLENNP 310
           S   + +      E L   +L+ N 
Sbjct: 105 SERELDKIKGLKLEEL---WLDGNS 126

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 47  NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRW-DALAGLEELILRD 105
           +L    +T     S+ + +    ++K++ L  N I   A   +S    +   LE     D
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 106 NKLMKIPD 113
               ++ D
Sbjct: 69  IFTGRVKD 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.87
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.87
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.57
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.55
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.54
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.12
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.93
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.91
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.17

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=2.5e-29  Score=225.62  Aligned_cols=299  Identities=23%  Similarity=0.376  Sum_probs=240.1

Q ss_pred             cccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        23 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      ..++++|+++++.+++++.++.+++|++|++++|+++.+++ +.++++|++|++++|.+.+.     ..+..+++|+.|+
T Consensus        43 l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i-----~~l~~l~~L~~L~  116 (384)
T d2omza2          43 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI-----TPLANLTNLTGLT  116 (384)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEE
T ss_pred             hCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccc-----ccccccccccccc
Confidence            35799999999999999888899999999999999999875 89999999999999998874     2467789999999


Q ss_pred             ccCCCCCCCCCCccccCCcEEEccCCCcc------------------------------------------cccCCcccc
Q 018662          103 LRDNKLMKIPDVSIFKKLSVFDVSFNEIT------------------------------------------SSHGLSNVT  140 (352)
Q Consensus       103 l~~~~l~~l~~~~~~~~L~~L~l~~~~~~------------------------------------------~~~~~~~~~  140 (352)
                      +.++.+..++.......+.......+.+.                                          ........+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (384)
T d2omza2         117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  196 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence            99888776544333333333332221110                                          001122336


Q ss_pred             cCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCC
Q 018662          141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLT  219 (352)
Q Consensus       141 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~  219 (352)
                      +.++.+.+++|.+........+++|+++++.+|.+..++.+..+++|+.+++.+|.+... .+..+++|++++++++.+.
T Consensus       197 ~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~  276 (384)
T d2omza2         197 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS  276 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC
T ss_pred             cccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccC
Confidence            788899999998888766778889999999999998888888999999999999988877 7788899999999999998


Q ss_pred             CCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhcccc
Q 018662          220 SMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE  299 (352)
Q Consensus       220 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~  299 (352)
                      ..+.+..++.++.+.+..|.+.+++.+..+++++.|++++|+++++..+..+++|++|++++|+|+.++.     +..++
T Consensus       277 ~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~-----l~~l~  351 (384)
T d2omza2         277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS-----LANLT  351 (384)
T ss_dssp             CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGG-----GGGCT
T ss_pred             CCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChh-----HcCCC
Confidence            8877888899999999999998888888888999999999999988778889999999999999997652     46789


Q ss_pred             CccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeee
Q 018662          300 TLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQ  348 (352)
Q Consensus       300 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (352)
                      +|++|++++|+++    .+++  +.+          +.++.+++++++|
T Consensus       352 ~L~~L~l~~N~l~----~l~~--l~~----------l~~L~~L~L~~Na  384 (384)
T d2omza2         352 NINWLSAGHNQIS----DLTP--LAN----------LTRITQLGLNDQA  384 (384)
T ss_dssp             TCCEEECCSSCCC----BCGG--GTT----------CTTCSEEECCCEE
T ss_pred             CCCEEECCCCcCC----CChh--hcc----------CCCCCEeeCCCCc
Confidence            9999999999654    3332  332          5688888888775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=3.7e-28  Score=217.92  Aligned_cols=294  Identities=24%  Similarity=0.330  Sum_probs=237.2

Q ss_pred             ecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCC
Q 018662           30 DLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLM  109 (352)
Q Consensus        30 ~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  109 (352)
                      .+....+++.....-+.+|++|++++++++.++ .+..+++|++|++++|.+++.     +.+..+++|++|++++|.+.
T Consensus        28 ~l~~~~~~~~~~~~~l~~l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~l~~l-----~~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDI-----TPLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEECHHHHTTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccCHHHhCCCCEEECCCCCCCCcc-ccccCCCCCEEeCcCCcCCCC-----ccccCCcccccccccccccc
Confidence            556666666544445678999999999999884 588999999999999999874     24778999999999999999


Q ss_pred             CCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCC--------------------------------------
Q 018662          110 KIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKN--------------------------------------  151 (352)
Q Consensus       110 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~--------------------------------------  151 (352)
                      .++++..+++|+.|+++++.+.+....... ..+.......+                                      
T Consensus       102 ~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (384)
T d2omza2         102 DITPLANLTNLTGLTLFNNQITDIDPLKNL-TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL  180 (384)
T ss_dssp             CCGGGTTCTTCCEEECCSSCCCCCGGGTTC-TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEE
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccchhhhhccccccccc
Confidence            988899999999999999987765432211 12222221111                                      


Q ss_pred             -----cCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCcc
Q 018662          152 -----EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFE  225 (352)
Q Consensus       152 -----~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~  225 (352)
                           ..........+++++.+.+.++.+..+.....+++|+.+++++|.+... .+..+++++.+++++|.+++.+.+.
T Consensus       181 ~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  260 (384)
T d2omza2         181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS  260 (384)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGT
T ss_pred             cccccccccccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCccc
Confidence                 1111123456788999999999888777778889999999999998877 6778899999999999999998888


Q ss_pred             ccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEee
Q 018662          226 ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY  305 (352)
Q Consensus       226 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~  305 (352)
                      .+++|+.++++++.+..++.+..++.++.+.+++|.++++..+..+++++.+++++|.++++++     +..+++|++|+
T Consensus       261 ~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~-----l~~l~~L~~L~  335 (384)
T d2omza2         261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLF  335 (384)
T ss_dssp             TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEE
T ss_pred             ccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcc-----cccCCCCCEEE
Confidence            9999999999999999998888999999999999999999888899999999999999998753     56789999999


Q ss_pred             ccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeeeccC
Q 018662          306 LENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDYG  351 (352)
Q Consensus       306 l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (352)
                      +++|+++    .++  .|.+          +.+++++++++|+..+
T Consensus       336 L~~n~l~----~l~--~l~~----------l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         336 FANNKVS----DVS--SLAN----------LTNINWLSAGHNQISD  365 (384)
T ss_dssp             CCSSCCC----CCG--GGGG----------CTTCCEEECCSSCCCB
T ss_pred             CCCCCCC----CCh--hHcC----------CCCCCEEECCCCcCCC
Confidence            9999643    333  2332          6789999999887654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3e-24  Score=186.36  Aligned_cols=276  Identities=21%  Similarity=0.307  Sum_probs=175.7

Q ss_pred             ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      ...+.+++++.+++.+|. .+++++++|++++|++++++. .|.++++|++|+++++.+....   ...|..+++|++|+
T Consensus        10 c~~~~~~C~~~~L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~---~~~f~~l~~L~~L~   85 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS---PGAFAPLVKLERLY   85 (305)
T ss_dssp             EETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC---TTTTTTCTTCCEEE
T ss_pred             ecCCEEEecCCCCCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccc---hhhhhCCCccCEec
Confidence            367889999999999987 678999999999999999987 5899999999999999988863   34577899999999


Q ss_pred             ccCCCCCCCCCCccccCCcEEEccCCCcccccCCcc-cccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccc
Q 018662          103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN-VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENL  181 (352)
Q Consensus       103 l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  181 (352)
                      +++|.++.+|. ...+.++.|.+.+|.+..+..... .......+....+......                  .....+
T Consensus        86 l~~n~l~~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~------------------~~~~~~  146 (305)
T d1xkua_          86 LSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG------------------IENGAF  146 (305)
T ss_dssp             CCSSCCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG------------------BCTTGG
T ss_pred             ccCCccCcCcc-chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccC------------------CCcccc
Confidence            99999998875 345678888888888776543222 2344455555444322210                  011223


Q ss_pred             cCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEc
Q 018662          182 QNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDV  257 (352)
Q Consensus       182 ~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l  257 (352)
                      ..+++|+.+++.++.+.......+++++.|++++|.....+  .+..++.++.|++++|.+.+++  .+..+++|++|++
T Consensus       147 ~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L  226 (305)
T d1xkua_         147 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  226 (305)
T ss_dssp             GGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             ccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeec
Confidence            33444445555544444443334455666666655544432  3455566666666666666542  3445566666666


Q ss_pred             CCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHH---HHHhccccCccEeeccCCCccccccccCCccHH
Q 018662          258 SSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIV---EAVAGSRETLTTIYLENNPQNLQIILLPSDKFS  324 (352)
Q Consensus       258 ~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  324 (352)
                      ++|+++.+ +.+..+++|+.|++++|+|+.++...   .......++|+.|++++||+..  ..+++..|.
T Consensus       227 ~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~--~~~~~~~f~  295 (305)
T d1xkua_         227 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY--WEIQPSTFR  295 (305)
T ss_dssp             CSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG--GGSCGGGGT
T ss_pred             ccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc--CcCCHhHhc
Confidence            66666665 45566666777777776666654211   1122334667777777777632  233555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=5.9e-24  Score=184.48  Aligned_cols=262  Identities=25%  Similarity=0.311  Sum_probs=190.8

Q ss_pred             cccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEEE
Q 018662           47 NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD  124 (352)
Q Consensus        47 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~  124 (352)
                      ..+.++.++.+++++|..+.  +++++|++++|.++...   ...|..+++|++|++++|.+..+++  +..+++|++|+
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~---~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBC---TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcC---hhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            56889999999999998663  68999999999988752   2357788999999999999988754  78899999999


Q ss_pred             ccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee----
Q 018662          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV----  200 (352)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~----  200 (352)
                      +++|++..++..  ....++.|....|.+..+..                    ..+.....+..+....+.....    
T Consensus        86 l~~n~l~~l~~~--~~~~l~~L~~~~n~l~~l~~--------------------~~~~~~~~~~~l~~~~n~~~~~~~~~  143 (305)
T d1xkua_          86 LSKNQLKELPEK--MPKTLQELRVHENEITKVRK--------------------SVFNGLNQMIVVELGTNPLKSSGIEN  143 (305)
T ss_dssp             CCSSCCSBCCSS--CCTTCCEEECCSSCCCBBCH--------------------HHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             ccCCccCcCccc--hhhhhhhhhccccchhhhhh--------------------hhhhccccccccccccccccccCCCc
Confidence            999988876543  23466777776665554321                    1122223333344433322211    


Q ss_pred             -cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCCc--ccccCCCCCC
Q 018662          201 -NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLE  275 (352)
Q Consensus       201 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~  275 (352)
                       .+..+++|+.+++.+|.+...+. ..+++++.|++++|.....  ..+..++.++.|++++|.++++  ..+..+++|+
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~  222 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR  222 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             cccccccccCccccccCCccccCc-ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccce
Confidence             45667899999999998887763 2468999999999988764  3577888999999999999887  5678899999


Q ss_pred             eEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeee
Q 018662          276 DLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQ  348 (352)
Q Consensus       276 ~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (352)
                      +|++++|.|+.+|+    .+..+++|++|++++|    +|..++...|...    .......++..++++++.
T Consensus       223 ~L~L~~N~L~~lp~----~l~~l~~L~~L~Ls~N----~i~~i~~~~f~~~----~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         223 ELHLNNNKLVKVPG----GLADHKYIQVVYLHNN----NISAIGSNDFCPP----GYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EEECCSSCCSSCCT----TTTTCSSCCEEECCSS----CCCCCCTTSSSCS----SCCTTSCCCSEEECCSSS
T ss_pred             eeeccccccccccc----ccccccCCCEEECCCC----ccCccChhhccCc----chhcccCCCCEEECCCCc
Confidence            99999999998863    3567899999999999    5556666555421    001113456666666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-21  Score=166.69  Aligned_cols=218  Identities=22%  Similarity=0.291  Sum_probs=140.4

Q ss_pred             ceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccC
Q 018662           27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD  105 (352)
Q Consensus        27 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  105 (352)
                      ..++++++.++.+|. .+++.+++|++++|+|+++|.. |.++++|++|+++++.+....   ...+..++.++.+....
T Consensus        14 ~~v~c~~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~---~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID---AAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCS
T ss_pred             eEEEcCCCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc---ccccccccccccccccc
Confidence            456778888888875 5678889999999999988864 888888999999888887753   23344566666666543


Q ss_pred             -CCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCccccc
Q 018662          106 -NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQ  182 (352)
Q Consensus       106 -~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  182 (352)
                       +.+..++.  +..+++|++|++++|.+......                                              
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~----------------------------------------------  123 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG----------------------------------------------  123 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----------------------------------------------
T ss_pred             ccccccccchhhcccccCCEEecCCccccccccc----------------------------------------------
Confidence             34544433  44455555555555443322110                                              


Q ss_pred             CCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcC
Q 018662          183 NLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVS  258 (352)
Q Consensus       183 ~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~  258 (352)
                                        .+....+|+.+++++|.++.++  .+..+++|++|++++|++..++  .+..+++|+.++++
T Consensus       124 ------------------~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         124 ------------------LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             ------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ------------------ccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence                              1111222333333333333332  2445566667777777666553  35667777788887


Q ss_pred             CCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          259 SNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       259 ~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +|+++++  ..+..+++|++|++++|.++.++   ...+..+++|+.|++++|||.|++
T Consensus       186 ~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~---~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALP---TEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---HHHHTTCTTCCEEECCSSCEECSG
T ss_pred             hccccccChhHhhhhhhccccccccccccccc---ccccccccccCEEEecCCCCCCCc
Confidence            7777766  56777788888888888888665   345667788888888888888877

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-21  Score=165.11  Aligned_cols=197  Identities=21%  Similarity=0.245  Sum_probs=132.7

Q ss_pred             ccccCCCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCCcccccCCCCCcEE
Q 018662           91 RWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQIL  168 (352)
Q Consensus        91 ~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L  168 (352)
                      .+.....+.+++.+++.++.+|. +  .+.+++|++++|.+..++.. +..+++|++|++++|.++.++.++.+++|++|
T Consensus         5 ~~~~~~~~~~v~C~~~~L~~iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L   82 (266)
T d1p9ag_           5 EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL   82 (266)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred             EEcccCCCeEEEccCCCCCeeCcCc--CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccc
Confidence            34445566666777777777664 2  14567777777766655432 22345555555555555444444444455555


Q ss_pred             EcCCCccCCcccccCCCCCcEEEccCCcccee--cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC
Q 018662          169 EFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME  244 (352)
Q Consensus       169 ~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~  244 (352)
                      ++++|++                      ...  .+..+++|+.++++++.+...+  .+..+++++.+++++|.+..++
T Consensus        83 ~Ls~N~l----------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~  140 (266)
T d1p9ag_          83 DLSHNQL----------------------QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP  140 (266)
T ss_dssp             ECCSSCC----------------------SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred             ccccccc----------------------cccccccccccccccccccccccceeeccccccccccccccccccccceec
Confidence            5555444                      333  3445566677777776665553  3556778888888888888765


Q ss_pred             --CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          245 --GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       245 --~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                        .+..++.++.+++++|+++++  ..+..+++|++|++++|+|+.+|+.    +..+++|+.|+|+||||.|++
T Consensus       141 ~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~----~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG----FFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCCCSEEECCSCCBCCSG
T ss_pred             cccccccccchhcccccccccccCccccccccccceeecccCCCcccChh----HCCCCCCCEEEecCCCCCCCc
Confidence              356778899999999999887  4578889999999999999988742    235689999999999999988

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.87  E-value=7.5e-20  Score=161.13  Aligned_cols=266  Identities=24%  Similarity=0.296  Sum_probs=183.2

Q ss_pred             ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      .++++|+++++.++.+|.  .+++|++|++++|+++++|..   ..+|+.|++++|.++...     .+  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~-----~l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALS-----DL--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC-----SC--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhh-----hh--ccccccccc
Confidence            368999999999999984  578999999999999999864   468999999999887642     21  356999999


Q ss_pred             cCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccC-------
Q 018662          104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR-------  176 (352)
Q Consensus       104 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~-------  176 (352)
                      ++|.+..+|.+..+++|++|+++++.+...+..   ...+..+.+..+.......+..++.++.+.+..+...       
T Consensus       106 ~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~  182 (353)
T d1jl5a_         106 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPL  182 (353)
T ss_dssp             CSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred             cccccccccchhhhccceeeccccccccccccc---cccccchhhccccccccccccccccceecccccccccccccccc
Confidence            999999999888899999999999887655432   3456666666655555555666666666766655432       


Q ss_pred             -------------CcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCC-----
Q 018662          177 -------------VMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN-----  238 (352)
Q Consensus       177 -------------~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n-----  238 (352)
                                   ..+....++.++.++++.+..... .....++..+.+..+.+...+.  ..+.+....+..+     
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~l  259 (353)
T d1jl5a_         183 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL-PDLPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENIFSGL  259 (353)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-CSCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc--cccccccccccccccccc
Confidence                         223344455666666666544332 1233455555555554443321  1223333333332     


Q ss_pred             ---------------CCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccE
Q 018662          239 ---------------GISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT  303 (352)
Q Consensus       239 ---------------~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~  303 (352)
                                     .+..+.  ..+++|++|++++|+++.++.  .+++|+.|++++|+|+.+++       .+++|++
T Consensus       260 ~~l~~~~~~~~~~~~~~~~~~--~~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~L~~l~~-------~~~~L~~  328 (353)
T d1jl5a_         260 SELPPNLYYLNASSNEIRSLC--DLPPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVPE-------LPQNLKQ  328 (353)
T ss_dssp             SCCCTTCCEEECCSSCCSEEC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-------CCTTCCE
T ss_pred             ccccchhcccccccCcccccc--ccCCCCCEEECCCCccCcccc--ccCCCCEEECCCCcCCcccc-------ccCCCCE
Confidence                           222221  345789999999999988753  36789999999999998763       2478999


Q ss_pred             eeccCCCccccccccC
Q 018662          304 IYLENNPQNLQIILLP  319 (352)
Q Consensus       304 L~l~~n~~~~~~~~~~  319 (352)
                      |++++|++. +++.+|
T Consensus       329 L~L~~N~L~-~lp~~~  343 (353)
T d1jl5a_         329 LHVEYNPLR-EFPDIP  343 (353)
T ss_dssp             EECCSSCCS-SCCCCC
T ss_pred             EECcCCcCC-CCCccc
Confidence            999999754 554444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=2.9e-21  Score=159.98  Aligned_cols=187  Identities=21%  Similarity=0.325  Sum_probs=98.5

Q ss_pred             cCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCC
Q 018662           94 ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN  173 (352)
Q Consensus        94 ~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  173 (352)
                      .+.+|+.|++.+|.++.++.+..+++|++|++++|.+..+.+ ...+++++++++++|.++.+..+..++.|+.+.++++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS
T ss_pred             HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccccccccccccccccccc
Confidence            345556666666555555555555666666665555544332 2223444444444444444334444444444444444


Q ss_pred             ccCCcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCc
Q 018662          174 RLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLH  253 (352)
Q Consensus       174 ~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~  253 (352)
                      .......+                     ...+.++.+.++.+.+.....+..+++|+.|++++|.+.....+..+++|+
T Consensus       118 ~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~  176 (227)
T d1h6ua2         118 QITDVTPL---------------------AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT  176 (227)
T ss_dssp             CCCCCGGG---------------------TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCC
T ss_pred             cccccchh---------------------ccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccce
Confidence            33333333                     333444444444444444444445555666666666555555555566666


Q ss_pred             EEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeecc
Q 018662          254 VLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLE  307 (352)
Q Consensus       254 ~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~  307 (352)
                      +|++++|++++++.+..+++|++|++++|+++++++     +..+++|+.|+++
T Consensus       177 ~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~~-----l~~l~~L~~L~ls  225 (227)
T d1h6ua2         177 TLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLT  225 (227)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEEEE
T ss_pred             ecccCCCccCCChhhcCCCCCCEEECcCCcCCCCcc-----cccCCCCCEEEee
Confidence            666666666666555666666666666666665542     3455666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=7.9e-21  Score=157.31  Aligned_cols=186  Identities=26%  Similarity=0.384  Sum_probs=143.8

Q ss_pred             ccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcC
Q 018662          140 TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRL  218 (352)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~  218 (352)
                      +.+|++|.+.+|.+..++.+..+++|+++++++|.+..+..+..+++++.++++++.+... .+..+++|+.+.++++..
T Consensus        40 l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~  119 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI  119 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCC
T ss_pred             cCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccccccccccccccccccccccc
Confidence            4455555555555555555566666666777666666555667777777777777766655 567778888888888887


Q ss_pred             CCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccc
Q 018662          219 TSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR  298 (352)
Q Consensus       219 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~  298 (352)
                      .....+...+.++.+.++++.+.....+..+++|++|++++|.+.+...+..+++|++|++++|+++++++     +..+
T Consensus       120 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~-----l~~l  194 (227)
T d1h6ua2         120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-----LASL  194 (227)
T ss_dssp             CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GGGC
T ss_pred             cccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChh-----hcCC
Confidence            77777778899999999999998887788889999999999999988778999999999999999998763     5678


Q ss_pred             cCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceee
Q 018662          299 ETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSF  346 (352)
Q Consensus       299 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (352)
                      ++|++|++++|++    ..++.  +.+          +.++.++++++
T Consensus       195 ~~L~~L~Ls~N~l----t~i~~--l~~----------l~~L~~L~lsn  226 (227)
T d1h6ua2         195 PNLIEVHLKNNQI----SDVSP--LAN----------TSNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEECTTSCC----CBCGG--GTT----------CTTCCEEEEEE
T ss_pred             CCCCEEECcCCcC----CCCcc--ccc----------CCCCCEEEeeC
Confidence            9999999999954    34442  333          68888888875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=2.1e-21  Score=168.87  Aligned_cols=240  Identities=18%  Similarity=0.223  Sum_probs=157.4

Q ss_pred             CcccEEEcCCCCCC---cchhhhhcCCCCcEEeccC-CccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccC
Q 018662           46 TNLTELDLTANRLT---SLDSRISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKK  119 (352)
Q Consensus        46 ~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~  119 (352)
                      .++++|+++++.+.   .+|+.+.++++|++|++++ |.+.+..   +..+.++++|++|++++|.+.+++.  +..+++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~i---P~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI---PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC---CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccc---ccccccccccchhhhccccccccccccccchhh
Confidence            46888888888777   4778888888888888886 6776543   3356678888888888888776544  666777


Q ss_pred             CcEEEccCCCccccc-CCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCC-cEEEccCCcc
Q 018662          120 LSVFDVSFNEITSSH-GLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL-QELWLGRNRI  197 (352)
Q Consensus       120 L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L-~~L~l~~~~l  197 (352)
                      |+.++++.|.+.... .....++.++.+++++|.+..                    ..+..+..+..+ +.++++.|.+
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~--------------------~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG--------------------AIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE--------------------ECCGGGGCCCTTCCEEECCSSEE
T ss_pred             hcccccccccccccCchhhccCcccceeecccccccc--------------------ccccccccccccccccccccccc
Confidence            888888777655432 223334555555555554432                    122233333332 4445555544


Q ss_pred             cee---cCCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC-CCCCCCCCCCcEEEcCCCcCCCc--cccc
Q 018662          198 KVV---NLCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK-MEGLSTLVNLHVLDVSSNKLTLV--DDIQ  269 (352)
Q Consensus       198 ~~~---~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~L~~L~l~~n~l~~~--~~~~  269 (352)
                      ...   .+..+ ....+++..+..... + .+..++.++.+++.++.+.. ++.+..+++|+.|++++|++++.  +.+.
T Consensus       187 ~~~~~~~~~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~  265 (313)
T d1ogqa_         187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             EEECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred             ccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHh
Confidence            433   12222 233566665544433 2 34566778888888887765 45667778889999999988743  5688


Q ss_pred             CCCCCCeEEcCCCCCc-chHHHHHHHhccccCccEeeccCCCcccc
Q 018662          270 NLSRLEDLWLNDNQIE-SLESIVEAVAGSRETLTTIYLENNPQNLQ  314 (352)
Q Consensus       270 ~~~~L~~L~l~~n~i~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  314 (352)
                      .+++|++|++++|+++ .+|.     ..++++|+.+++++|+..|.
T Consensus       266 ~L~~L~~L~Ls~N~l~g~iP~-----~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         266 QLKFLHSLNVSFNNLCGEIPQ-----GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GCTTCCEEECCSSEEEEECCC-----STTGGGSCGGGTCSSSEEES
T ss_pred             CCCCCCEEECcCCcccccCCC-----cccCCCCCHHHhCCCccccC
Confidence            8899999999999888 3442     35678899999999986554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=3.1e-21  Score=167.71  Aligned_cols=220  Identities=20%  Similarity=0.212  Sum_probs=156.1

Q ss_pred             CCcEEeccCCccCccccccccccccCCCCcEEEccC-CCCC-CCCC-CccccCCcEEEccCCCcccccCCcccccCcceE
Q 018662           70 NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD-NKLM-KIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL  146 (352)
Q Consensus        70 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  146 (352)
                      ++++|+++++.+.+..+ .++.+..+++|++|++++ |.+. .+|. +.++++|++|++++|.+.+..+.          
T Consensus        51 ~v~~L~L~~~~l~g~~~-lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~----------  119 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----------  119 (313)
T ss_dssp             CEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----------
T ss_pred             EEEEEECCCCCCCCCCC-CChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc----------
Confidence            57777887777665321 224566777777777775 5555 4665 67777777777777776654332          


Q ss_pred             EccCCcCCCcccccCCCCCcEEEcCCCccC--CcccccCCCCCcEEEccCCcccee---cCCCCCC-CCEEEcCCCcCCC
Q 018662          147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKC-IKKISLQSNRLTS  220 (352)
Q Consensus       147 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~-L~~L~l~~~~~~~  220 (352)
                                 .+..+.+|+.+++..|.+.  .+..+..++.++.+++++|.+...   .+..+.. ++.+.+++|.+++
T Consensus       120 -----------~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~  188 (313)
T d1ogqa_         120 -----------FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             -----------GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             -----------cccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccc
Confidence                       2344455555666555443  345678888999999999887754   4445555 4899999998876


Q ss_pred             C-c-CccccccCcEEECCCCCCCCC-C-CCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCc-chHHHHHHH
Q 018662          221 M-K-GFEECIALEELYLSHNGISKM-E-GLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIE-SLESIVEAV  294 (352)
Q Consensus       221 ~-~-~~~~~~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~  294 (352)
                      . + .+..+ ....+++..+...+. + .+..+++++.+++++|.+.+. +.+..+++|+.|++++|+++ .+|+    .
T Consensus       189 ~~~~~~~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~----~  263 (313)
T d1ogqa_         189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ----G  263 (313)
T ss_dssp             ECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG----G
T ss_pred             ccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCCh----H
Confidence            5 2 33333 455788888766542 2 456788999999999999876 67788899999999999998 4543    4


Q ss_pred             hccccCccEeeccCCCcccccc
Q 018662          295 AGSRETLTTIYLENNPQNLQII  316 (352)
Q Consensus       295 ~~~~~~L~~L~l~~n~~~~~~~  316 (352)
                      +..+++|++|++++|.++|.++
T Consensus       264 l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         264 LTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECC
T ss_pred             HhCCCCCCEEECcCCcccccCC
Confidence            5678999999999999988873

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-19  Score=154.22  Aligned_cols=189  Identities=25%  Similarity=0.310  Sum_probs=137.1

Q ss_pred             ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      .++.++++++++++.+|. .+++++++|++++|.+++++. .|.++++|++|++++|.++..     +.+..+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~~iP~-~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-----~~~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-----QVDGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-----ECCSCCTTCCEEE
T ss_pred             CCCeEEEccCCCCCeeCc-CcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-----ccccccccccccc
Confidence            455678999999999875 567899999999999998875 488999999999999998763     3456789999999


Q ss_pred             ccCCCCCCCCC-CccccCCcEEEccCCCcccccCCc-ccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccCCc
Q 018662          103 LRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVM  178 (352)
Q Consensus       103 l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~  178 (352)
                      +++|.+..++. +..+++|+.|+++++.+..+.... ..+.+++.|++.+|.+..+  ..+..++.++.+++++|+++.+
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            99999987776 778899999999999887765433 3366777788777776663  2345566677777776666533


Q ss_pred             --ccccCCCCCcEEEccCCcccee--cCCCCCCCCEEEcCCCcC
Q 018662          179 --ENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRL  218 (352)
Q Consensus       179 --~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~L~~L~l~~~~~  218 (352)
                        ..+..+++|++|++++|.+...  .+..+++|+.|++++|.+
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence              2245556666666666655544  344455555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=3e-19  Score=145.70  Aligned_cols=163  Identities=26%  Similarity=0.467  Sum_probs=111.1

Q ss_pred             cCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCC
Q 018662          141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLT  219 (352)
Q Consensus       141 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~  219 (352)
                      .++++|++++|.+..+..+..+++|++|++++|+++.++.+..+++|+.|++++|.+... .+..+++|+.++++++.+.
T Consensus        46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~  125 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS  125 (210)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCC
T ss_pred             cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccccccccccccccccccccc
Confidence            345555555555544444555566666666666665555556666666666666666555 4566677777777777766


Q ss_pred             CCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhcccc
Q 018662          220 SMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE  299 (352)
Q Consensus       220 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~  299 (352)
                      ..+.+..++.++.+++++|.+.+.+....+++|+.+++++|+++++..+..+++|++|++++|+|++++.     +..++
T Consensus       126 ~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~  200 (210)
T d1h6ta2         126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-----LAGLK  200 (210)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-----GTTCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEECCCCCCCCChh-----hcCCC
Confidence            6666777777888888888777776666777788888888888777667777888888888888876642     45677


Q ss_pred             CccEeeccC
Q 018662          300 TLTTIYLEN  308 (352)
Q Consensus       300 ~L~~L~l~~  308 (352)
                      +|++|+|++
T Consensus       201 ~L~~L~Ls~  209 (210)
T d1h6ta2         201 NLDVLELFS  209 (210)
T ss_dssp             TCSEEEEEE
T ss_pred             CCCEEEccC
Confidence            888887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=4.9e-19  Score=143.16  Aligned_cols=61  Identities=16%  Similarity=0.228  Sum_probs=32.6

Q ss_pred             cCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCC
Q 018662           94 ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK  155 (352)
Q Consensus        94 ~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  155 (352)
                      .++++++|+++++.+..++.+..+++|++|++++|++.+..+ ...+++|++|++++|.+..
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~   98 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD   98 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCccccccccccccccc
Confidence            355666666666666666555566666666666665554432 2223444444444443333

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=5.7e-19  Score=142.79  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=64.9

Q ss_pred             EEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCc
Q 018662           51 LDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEI  130 (352)
Q Consensus        51 L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~  130 (352)
                      ..++.++++.... ...++++++|+++++.++..     .++..+++|++|++++|.++.++++..+++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~~-~~~l~~l~~L~l~~~~i~~l-----~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI-----DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC-HHHHTTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC-HHHhcCCCEEECCCCCCCCc-----cccccCCCcCcCccccccccCcccccCCccccccccccccc
Confidence            3445555543322 24556677777777766542     23455667777777777776666666677777777777666


Q ss_pred             ccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCcc
Q 018662          131 TSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL  175 (352)
Q Consensus       131 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l  175 (352)
                      ..+.+ ...++.|+.++++++.......+..+++|+.+++++|.+
T Consensus        97 ~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l  140 (199)
T d2omxa2          97 ADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI  140 (199)
T ss_dssp             CCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred             ccccc-cccccccccccccccccccccccchhhhhHHhhhhhhhh
Confidence            55443 223455555555555444433344444444444444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=3.6e-19  Score=145.18  Aligned_cols=180  Identities=21%  Similarity=0.351  Sum_probs=113.8

Q ss_pred             EeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcC
Q 018662           74 LSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEV  153 (352)
Q Consensus        74 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  153 (352)
                      ..+..+.+++...     ...+..|++|++++|.+..++.+..+++|++|++++|++.++.+. ..+++|++|++++|.+
T Consensus        29 ~~l~~~~~~~~~~-----~~~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~-~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVT-----QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPL-ANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEEC-----HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGG-TTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccC-----HHHhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcccc-ccCccccccccccccc
Confidence            3455555554221     123567888888888888877777888888888888887765542 3456677777777766


Q ss_pred             CCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEE
Q 018662          154 PKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEEL  233 (352)
Q Consensus       154 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L  233 (352)
                      ..++.+..+++|+.+++.++.+..++.+..++.++.+++                     ++|.++..+....+++|+.+
T Consensus       103 ~~l~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~---------------------~~n~l~~~~~~~~l~~L~~l  161 (210)
T d1h6ta2         103 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL---------------------GNNKITDITVLSRLTKLDTL  161 (210)
T ss_dssp             CCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEEC---------------------CSSCCCCCGGGGGCTTCSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc---------------------cccccccccccccccccccc
Confidence            665556666666666666665554444555555555554                     44444444444555666666


Q ss_pred             ECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcC
Q 018662          234 YLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLN  280 (352)
Q Consensus       234 ~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~  280 (352)
                      ++++|++++++.+..+++|++|++++|++++++.+..+++|++|+++
T Consensus       162 ~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         162 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             ECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             ccccccccccccccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEcc
Confidence            66666666665556666666666666666666556666666666664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1.1e-16  Score=140.56  Aligned_cols=257  Identities=19%  Similarity=0.233  Sum_probs=169.0

Q ss_pred             ccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEE
Q 018662           22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL  101 (352)
Q Consensus        22 ~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  101 (352)
                      .++++++|++++++++.+|.  .+.+|++|++.+|+++.++..   .+.|++|++++|.+...     +.+..+++|++|
T Consensus        56 ~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~~l-----p~~~~l~~L~~L  125 (353)
T d1jl5a_          56 LPPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKL-----PELQNSSFLKII  125 (353)
T ss_dssp             CCTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSC-----CCCTTCTTCCEE
T ss_pred             CCCCCCEEECCCCCCccccc--chhhhhhhhhhhcccchhhhh---ccccccccccccccccc-----cchhhhccceee
Confidence            35789999999999999875  467999999999999877631   24699999999998764     235678999999


Q ss_pred             EccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccC--------------------CcCCCcccccC
Q 018662          102 ILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSK--------------------NEVPKMEEIEH  161 (352)
Q Consensus       102 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~--------------------~~~~~~~~~~~  161 (352)
                      +++++.+...+.  ....+..+.+..+....... ...+..++.+.+..                    ...........
T Consensus       126 ~l~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~-l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  202 (353)
T d1jl5a_         126 DVDNNSLKKLPD--LPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN  202 (353)
T ss_dssp             ECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTT
T ss_pred             cccccccccccc--ccccccchhhcccccccccc-ccccccceecccccccccccccccccccccccccccccccccccc
Confidence            999988775543  12334444444333222111 11233344444433                    33333444566


Q ss_pred             CCCCcEEEcCCCccCCcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcC--------------------CCcCCCC
Q 018662          162 FHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQ--------------------SNRLTSM  221 (352)
Q Consensus       162 ~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~--------------------~~~~~~~  221 (352)
                      ++.++.+++.++......  ....++..+.+..+.+... ......+....+.                    .+.+...
T Consensus       203 l~~L~~l~l~~n~~~~~~--~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  279 (353)
T d1jl5a_         203 LPFLTTIYADNNLLKTLP--DLPPSLEALNVRDNYLTDL-PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL  279 (353)
T ss_dssp             CTTCCEEECCSSCCSSCC--SCCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE
T ss_pred             cccccccccccccccccc--ccccccccccccccccccc-ccccccccccccccccccccccccchhcccccccCccccc
Confidence            788999999887665332  2234455666665554332 1112233333333                    3322222


Q ss_pred             cCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCc
Q 018662          222 KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETL  301 (352)
Q Consensus       222 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L  301 (352)
                      +  ..+++|++|++++|+++.++.  .+++|+.|++++|+++.++.  .+++|++|++++|+++.+|+.       ..+|
T Consensus       280 ~--~~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~L~~l~~--~~~~L~~L~L~~N~L~~lp~~-------~~~L  346 (353)
T d1jl5a_         280 C--DLPPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVPE--LPQNLKQLHVEYNPLREFPDI-------PESV  346 (353)
T ss_dssp             C--CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCC-------CTTC
T ss_pred             c--ccCCCCCEEECCCCccCcccc--ccCCCCEEECCCCcCCcccc--ccCCCCEEECcCCcCCCCCcc-------cccc
Confidence            2  236889999999999998874  46789999999999998753  356899999999999988742       2457


Q ss_pred             cEeecc
Q 018662          302 TTIYLE  307 (352)
Q Consensus       302 ~~L~l~  307 (352)
                      +.|.+.
T Consensus       347 ~~L~~~  352 (353)
T d1jl5a_         347 EDLRMN  352 (353)
T ss_dssp             CEEECC
T ss_pred             CeeECc
Confidence            777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3e-17  Score=140.19  Aligned_cols=195  Identities=19%  Similarity=0.254  Sum_probs=141.6

Q ss_pred             ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccC-CccCccccccccccccCCC
Q 018662           22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALAG   97 (352)
Q Consensus        22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~   97 (352)
                      .+.++++|++++|+++.++.  +..+++|++|+++++.+..++.. +..++.++.+.... +.++..   ....|..+++
T Consensus        30 ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l---~~~~~~~l~~  106 (284)
T d1ozna_          30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV---DPATFHGLGR  106 (284)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC---CTTTTTTCTT
T ss_pred             CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccc---cchhhccccc
Confidence            45788999999999999986  34568999999999999987765 67789999988765 566664   3345778999


Q ss_pred             CcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCC
Q 018662           98 LEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGS  172 (352)
Q Consensus        98 L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~  172 (352)
                      |++|++++|.+..++.  +...++|+.+++++|.+..+++. +....+|++|++++|.+..+  ..+..+++|+.+++.+
T Consensus       107 L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhh
Confidence            9999999999887654  67788999999999999887643 33466778888887776653  3456666777777776


Q ss_pred             CccC--CcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCC
Q 018662          173 NRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLT  219 (352)
Q Consensus       173 ~~l~--~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~  219 (352)
                      |++.  .+..+..+++|+++++++|.+...   .+..+++|+++++++|.+.
T Consensus       187 N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            6664  224455566666666666655544   3455555566665555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.1e-16  Score=127.60  Aligned_cols=197  Identities=18%  Similarity=0.250  Sum_probs=128.2

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      ..+.+++++.+++.+|. .+++++++|++++|+++++|.. |.++++|++|++++|.+....  +...|..++.++++.+
T Consensus         9 ~~~~i~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i--~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           9 SNRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI--EADVFSNLPKLHEIRI   85 (242)
T ss_dssp             CSSEEEEESCSCSSCCS-CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEE--CSSSEESCTTCCEEEE
T ss_pred             cCCEEEEeCCCCCCcCC-CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhcccccccee--eccccccccccccccc
Confidence            45788999999998886 5678999999999999999875 899999999999999877632  2345777899999987


Q ss_pred             cC-CCCCCCCC--CccccCCcEEEccCCCcccccCCcc--cccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc
Q 018662          104 RD-NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSN--VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM  178 (352)
Q Consensus       104 ~~-~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  178 (352)
                      .. +.+..++.  +..+++|++++++++.+........  ....+..+...++.+..+..                    
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~--------------------  145 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--------------------  145 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT--------------------
T ss_pred             cccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccc--------------------
Confidence            65 46665554  6788999999999998876543222  12333333333333332110                    


Q ss_pred             ccccCC-CCCcEEEccCCcccee--cCCCCCCCCEE-EcCCCcCCCCc--CccccccCcEEECCCCCCCCCC
Q 018662          179 ENLQNL-TNLQELWLGRNRIKVV--NLCGLKCIKKI-SLQSNRLTSMK--GFEECIALEELYLSHNGISKME  244 (352)
Q Consensus       179 ~~~~~~-~~L~~L~l~~~~l~~~--~~~~~~~L~~L-~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~  244 (352)
                      ..+..+ ..++.+++.++.+...  ......++..+ .+.+|.++.++  .+.++++|+.|++++|+++.++
T Consensus       146 ~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             cccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC
Confidence            111111 2444555555555444  12223333333 34555666664  2566777777777777777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.1e-17  Score=150.35  Aligned_cols=151  Identities=26%  Similarity=0.284  Sum_probs=72.8

Q ss_pred             CCCCCcEEEcCCCccCC-------cccccCCCCCcEEEccCCcccee-------cCCCCCCCCEEEcCCCcCCCCc--C-
Q 018662          161 HFHDLQILEFGSNRLRV-------MENLQNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSMK--G-  223 (352)
Q Consensus       161 ~~~~L~~L~l~~~~l~~-------~~~~~~~~~L~~L~l~~~~l~~~-------~~~~~~~L~~L~l~~~~~~~~~--~-  223 (352)
                      ..+.++.+.+..+....       .........++.+++++|.+...       .+...+.++.+++++|.+....  . 
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            34556666666665421       11123445666666666655433       2234455666666666553220  0 


Q ss_pred             ----ccccccCcEEECCCCCCCCCC------CCCCCCCCcEEEcCCCcCCCc------ccc-cCCCCCCeEEcCCCCCcc
Q 018662          224 ----FEECIALEELYLSHNGISKME------GLSTLVNLHVLDVSSNKLTLV------DDI-QNLSRLEDLWLNDNQIES  286 (352)
Q Consensus       224 ----~~~~~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~------~~~-~~~~~L~~L~l~~n~i~~  286 (352)
                          ....+.|+.++++++.+....      .+...++|++|++++|.+++.      ..+ ...+.|++|++++|.|++
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence                112345666666665554321      122334566666666665432      111 123456666666666654


Q ss_pred             hH-HHHHHHhccccCccEeeccCCCc
Q 018662          287 LE-SIVEAVAGSRETLTTIYLENNPQ  311 (352)
Q Consensus       287 ~~-~~~~~~~~~~~~L~~L~l~~n~~  311 (352)
                      .. ..+...+..+++|++|++++|++
T Consensus       384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         384 SSCSSLAATLLANHSLRELDLSNNCL  409 (460)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             HHHHHHHHHHhcCCCCCEEECCCCcC
Confidence            21 11222334456666666666643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.3e-15  Score=112.45  Aligned_cols=104  Identities=27%  Similarity=0.364  Sum_probs=88.5

Q ss_pred             ceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCC
Q 018662           27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN  106 (352)
Q Consensus        27 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  106 (352)
                      |+|++++++++.++.+..+++|++|++++|+++++|..+..+++|++|++++|.++..     +.+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l-----~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-----DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc-----CccccccccCeEECCCC
Confidence            6789999999999888888999999999999999988888999999999999998863     35777899999999999


Q ss_pred             CCCCCCC---CccccCCcEEEccCCCcccccC
Q 018662          107 KLMKIPD---VSIFKKLSVFDVSFNEITSSHG  135 (352)
Q Consensus       107 ~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~  135 (352)
                      .+..++.   +..+++|+.|++++|++.....
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCcc
Confidence            9887764   6778889999999998876543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=1.7e-15  Score=111.90  Aligned_cols=102  Identities=30%  Similarity=0.410  Sum_probs=66.2

Q ss_pred             CEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC-CCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcch
Q 018662          209 KKISLQSNRLTSMKGFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL  287 (352)
Q Consensus       209 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~  287 (352)
                      +.|++++|+++..+.+..++.|++|++++|.+++++ .+..+++|+.|++++|.+++++.+..+++|+.+++++|+|+.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCC
Confidence            356666666666666666667777777777776664 3566666777777777776666666667777777777777665


Q ss_pred             HHHHHHHhccccCccEeeccCCCcc
Q 018662          288 ESIVEAVAGSRETLTTIYLENNPQN  312 (352)
Q Consensus       288 ~~~~~~~~~~~~~L~~L~l~~n~~~  312 (352)
                      ++.  ..+..+++|+.|++++|++.
T Consensus        81 ~~~--~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          81 AAI--QPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             STT--GGGGGCTTCCEEECTTSGGG
T ss_pred             CCc--hhhcCCCCCCEEECCCCcCC
Confidence            432  22455667777777777543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.1e-16  Score=119.31  Aligned_cols=101  Identities=20%  Similarity=0.251  Sum_probs=48.5

Q ss_pred             CCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEEc
Q 018662          205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWL  279 (352)
Q Consensus       205 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l  279 (352)
                      +++|+.|++++|.++.++.+..+++|++|++++|.++.++.  +..+++|++|++++|+++.+   ..+..+++|+.+++
T Consensus        40 l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l  119 (162)
T d1a9na_          40 LDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI  119 (162)
T ss_dssp             TTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred             cccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhc
Confidence            34444444444444444444445555555555555554432  23345555555555555443   23444555555555


Q ss_pred             CCCCCcchHHHHHHHhccccCccEee
Q 018662          280 NDNQIESLESIVEAVAGSRETLTTIY  305 (352)
Q Consensus       280 ~~n~i~~~~~~~~~~~~~~~~L~~L~  305 (352)
                      ++|+++..+..-...+..+|+|+.||
T Consensus       120 ~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         120 LRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             CCCccccccchHHHHHHHCCCcCeeC
Confidence            55555544433223334455555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.7e-14  Score=119.76  Aligned_cols=211  Identities=18%  Similarity=0.168  Sum_probs=112.7

Q ss_pred             cEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccC--CcccccCcceEE
Q 018662           72 KKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG--LSNVTDTLKELY  147 (352)
Q Consensus        72 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~  147 (352)
                      +.++.++..++.+    ++.+  .+++++|++++|.++.++.  +.++++|++|++++|.+....+  .+..++.++++.
T Consensus        11 ~~i~c~~~~l~~i----P~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQESKVTEI----PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEESCSCSSC----CSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CEEEEeCCCCCCc----CCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            4566666555542    1111  2456777777777776654  5667777777777776554322  122245555555


Q ss_pred             ccCC-cCCC--cccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc--
Q 018662          148 VSKN-EVPK--MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK--  222 (352)
Q Consensus       148 l~~~-~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--  222 (352)
                      +..+ .+..  ...+..+++|+++++.++.+...+....+..                  ...++.+...++.+...+  
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~------------------l~~l~~~~~~n~~l~~i~~~  146 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS------------------LQKVLLDIQDNINIHTIERN  146 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCB------------------SSCEEEEEESCTTCCEECTT
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccc------------------cccccccccccccccccccc
Confidence            4332 2222  1223444455555555444432222222222                  223333333444444332  


Q ss_pred             Ccccc-ccCcEEECCCCCCCCCCC-CCCCCCCcEE-EcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhcc
Q 018662          223 GFEEC-IALEELYLSHNGISKMEG-LSTLVNLHVL-DVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGS  297 (352)
Q Consensus       223 ~~~~~-~~L~~L~l~~n~l~~~~~-~~~~~~L~~L-~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~  297 (352)
                      .+..+ ..++.+++.+|+++.++. .....++.++ .+++|.++.+  ..+..+++|++|++++|+|+.+|.   ..+.+
T Consensus       147 ~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~---~~~~~  223 (242)
T d1xwdc1         147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS---YGLEN  223 (242)
T ss_dssp             SSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS---SSCTT
T ss_pred             ccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH---HHHcC
Confidence            23333 367778888888777643 2334455444 4677778777  347788888888888888887763   23455


Q ss_pred             ccCccEeeccCC
Q 018662          298 RETLTTIYLENN  309 (352)
Q Consensus       298 ~~~L~~L~l~~n  309 (352)
                      +++|+.+++.+.
T Consensus       224 l~~L~~l~~~~l  235 (242)
T d1xwdc1         224 LKKLRARSTYNL  235 (242)
T ss_dssp             CCEEESSSEESS
T ss_pred             CcccccCcCCCC
Confidence            555665555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=2e-14  Score=114.85  Aligned_cols=127  Identities=24%  Similarity=0.320  Sum_probs=102.8

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCc-chh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTS-LDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~-l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      +.+.+++++++++.+|. .+++++++|++++|.|+. ++. .|.++++|++|++++|.+...   ....+..+++|++|+
T Consensus         9 ~~~~v~Cs~~~L~~iP~-~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~---~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI---EPNAFEGASHIQELQ   84 (192)
T ss_dssp             ETTEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB---CTTTTTTCTTCCEEE
T ss_pred             cCCEEEEeCCCcCccCC-CCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc---cccccccccccceee
Confidence            35688999999999986 567899999999999974 444 478999999999999998876   334667789999999


Q ss_pred             ccCCCCCCCCC--CccccCCcEEEccCCCcccccCCc-ccccCcceEEccCCcCCC
Q 018662          103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPK  155 (352)
Q Consensus       103 l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~  155 (352)
                      +++|.+..+++  +..+++|++|++++|.+..+++.. ..+++|+++++++|.+..
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            99999998876  788999999999999998876543 346677777777776544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-15  Score=138.31  Aligned_cols=316  Identities=19%  Similarity=0.198  Sum_probs=203.5

Q ss_pred             ccCceeecCCCCCcCCC---CCCCCCcccEEEcCCCCCC-----cchhhhhcCCCCcEEeccCCccCcccccccc-ccc-
Q 018662           24 LSNTVLDLTSFQLHDLD---SVEFPTNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDDAAIEPIS-RWD-   93 (352)
Q Consensus        24 ~~l~~L~l~~~~l~~~~---~~~~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~-   93 (352)
                      .+|+.||++++++++..   -.+.+++++.|++++|.++     .+...+..+++|++|++++|.+++.....+. .+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46899999999998742   1344689999999999987     3455578999999999999988754322222 222 


Q ss_pred             cCCCCcEEEccCCCCCCC-----CC-CccccCCcEEEccCCCcccccC------Ccc-----------------------
Q 018662           94 ALAGLEELILRDNKLMKI-----PD-VSIFKKLSVFDVSFNEITSSHG------LSN-----------------------  138 (352)
Q Consensus        94 ~l~~L~~L~l~~~~l~~l-----~~-~~~~~~L~~L~l~~~~~~~~~~------~~~-----------------------  138 (352)
                      ...+|++|++++|.++..     +. +..+++|++|++++|.+.....      ...                       
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            245799999999998742     22 6678999999999987643110      000                       


Q ss_pred             -----cccCcceEEccCCcCCCc------ccc-cCCCCCcEEEcCCCccCCc------ccccCCCCCcEEEccCCcccee
Q 018662          139 -----VTDTLKELYVSKNEVPKM------EEI-EHFHDLQILEFGSNRLRVM------ENLQNLTNLQELWLGRNRIKVV  200 (352)
Q Consensus       139 -----~~~~L~~L~l~~~~~~~~------~~~-~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~L~l~~~~l~~~  200 (352)
                           ....++.+.++.+.....      ..+ ........+.+..+.....      ..+...+.++.+.+..+.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence                 012333444433332210      001 1123344555555544321      1234567788888888765432


Q ss_pred             --------cCCCCCCCCEEEcCCCcCCCCc------CccccccCcEEECCCCCCCCC--C----C-CCCCCCCcEEEcCC
Q 018662          201 --------NLCGLKCIKKISLQSNRLTSMK------GFEECIALEELYLSHNGISKM--E----G-LSTLVNLHVLDVSS  259 (352)
Q Consensus       201 --------~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~n~l~~~--~----~-~~~~~~L~~L~l~~  259 (352)
                              .......++.+++++|.+....      .+...+.++.+++++|.+...  .    . ......|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                    3455788999999998776542      244678899999999988641  1    1 23446799999999


Q ss_pred             CcCCCc------ccccCCCCCCeEEcCCCCCcchH--HHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHH
Q 018662          260 NKLTLV------DDIQNLSRLEDLWLNDNQIESLE--SIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLI  331 (352)
Q Consensus       260 n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  331 (352)
                      +.++..      ..+...++|++|++++|.|++-.  ..........+.|++|++++|.++...       ...+..   
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~-------~~~l~~---  391 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS-------CSSLAA---  391 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH-------HHHHHH---
T ss_pred             cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHH-------HHHHHH---
Confidence            998754      23445678999999999998522  122233345678999999999654221       111111   


Q ss_pred             HhhhhccCceeceeeeec
Q 018662          332 LMYFFRSHSVLGFSFCQD  349 (352)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~  349 (352)
                      .+.-++++++++++++..
T Consensus       392 ~l~~~~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCL  409 (460)
T ss_dssp             HHHHCCCCCEEECCSSSC
T ss_pred             HHhcCCCCCEEECCCCcC
Confidence            222367888888887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=3.8e-14  Score=113.23  Aligned_cols=125  Identities=22%  Similarity=0.225  Sum_probs=87.9

Q ss_pred             cEEEccCCccceecCCCCCCCCEEEcCCCcCCCC---cCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcC
Q 018662          188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKL  262 (352)
Q Consensus       188 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l  262 (352)
                      +.++.+++.+..+.-.-.+++++|++++|.++..   ..+..+++|+.|++++|.+..++  .+..+++|++|++++|++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            3555666655555333346777777777777543   24567778888888888777653  466677788888888888


Q ss_pred             CCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          263 TLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       263 ~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +.+  ..|..+++|++|++++|.|+.++   ...+..+++|++|++++|++.|.+
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~---~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYDNQISCVM---PGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cccCHHHHhCCCcccccccCCccccccC---HHHhcCCccccccccccccccccc
Confidence            776  45777888888888888888765   345566788888888888887766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.7e-15  Score=114.90  Aligned_cols=104  Identities=26%  Similarity=0.388  Sum_probs=49.5

Q ss_pred             cCceeecCCCCCcCCCCC-CCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662           25 SNTVLDLTSFQLHDLDSV-EFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~-~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  103 (352)
                      .+++|++++++|+.++.. ..+++|+.|++++|.+++++ .+..+++|++|++++|.++...+   ..+..+++|++|++
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~---~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGE---GLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECS---CHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCc---ccccccccccccee
Confidence            455555555555555433 22345555555555555442 24455555555555555544311   11233455555555


Q ss_pred             cCCCCCCCCC---CccccCCcEEEccCCCccc
Q 018662          104 RDNKLMKIPD---VSIFKKLSVFDVSFNEITS  132 (352)
Q Consensus       104 ~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~  132 (352)
                      ++|.+..++.   +..+++|++|++++|++..
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ccccccccccccccccccccchhhcCCCcccc
Confidence            5555544332   3344455555555554443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=1.3e-14  Score=126.97  Aligned_cols=244  Identities=21%  Similarity=0.235  Sum_probs=139.2

Q ss_pred             chhhhhcCCCCcEEeccCCccCcccccccc-ccccCCCCcEEEccCCCCCCCCC------------CccccCCcEEEccC
Q 018662           61 LDSRISHLSNLKKLSLRQNLIDDAAIEPIS-RWDALAGLEELILRDNKLMKIPD------------VSIFKKLSVFDVSF  127 (352)
Q Consensus        61 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~------------~~~~~~L~~L~l~~  127 (352)
                      +...+..+..|++|++++|.+.......+. .+...+.|+.++++++.......            +..+++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            444566677777777777766553322222 23456677777776654432210            23456677777776


Q ss_pred             CCccccc-----CCcccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee
Q 018662          128 NEITSSH-----GLSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV  200 (352)
Q Consensus       128 ~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~  200 (352)
                      |.+....     ......++|++|++++|.+....  .+..  .+..+       .........+.++.+.++++.+...
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~-------~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL-------AVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH-------HHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccc--ccccc-------ccccccccCcccceeeccccccccc
Confidence            6654321     11112455666666655443210  0000  00000       0000112345566666666655433


Q ss_pred             -------cCCCCCCCCEEEcCCCcCCCC-------cCccccccCcEEECCCCCCCCC------CCCCCCCCCcEEEcCCC
Q 018662          201 -------NLCGLKCIKKISLQSNRLTSM-------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSN  260 (352)
Q Consensus       201 -------~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n  260 (352)
                             .+..++.++.+++++|.+...       ..+..+++|+.|++++|.++..      ..+..+++|++|++++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence                   234456777777777766542       2356678888899988887541      23567788999999999


Q ss_pred             cCCCc------cccc--CCCCCCeEEcCCCCCcchH--HHHHHHhccccCccEeeccCCCccc
Q 018662          261 KLTLV------DDIQ--NLSRLEDLWLNDNQIESLE--SIVEAVAGSRETLTTIYLENNPQNL  313 (352)
Q Consensus       261 ~l~~~------~~~~--~~~~L~~L~l~~n~i~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~  313 (352)
                      .+++.      ..+.  ..+.|++|++++|.|+.-.  ........++++|++|++++|.+..
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            98754      2232  2467999999999988522  2222333467899999999997643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.6e-14  Score=119.36  Aligned_cols=166  Identities=15%  Similarity=0.173  Sum_probs=91.9

Q ss_pred             ccCcceEEccCCcCCC--cccccCCCCCcEEEcCCC-ccCC--ccc-ccCCCCCcEEEccCCc-ccee-----cCCCCCC
Q 018662          140 TDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSN-RLRV--MEN-LQNLTNLQELWLGRNR-IKVV-----NLCGLKC  207 (352)
Q Consensus       140 ~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~-~l~~--~~~-~~~~~~L~~L~l~~~~-l~~~-----~~~~~~~  207 (352)
                      +++|++|++++|.+..  +..++.+++|++|+++++ .++.  +.. ...+++|++|+++++. +...     ....++.
T Consensus        70 c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~  149 (284)
T d2astb2          70 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  149 (284)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccc
Confidence            3344444444443322  223444455555555553 2221  111 2345666666666542 2221     1123466


Q ss_pred             CCEEEcCCCc--CCCC--c-CccccccCcEEECCCCC-CCC--CCCCCCCCCCcEEEcCCC-cCCCc--ccccCCCCCCe
Q 018662          208 IKKISLQSNR--LTSM--K-GFEECIALEELYLSHNG-ISK--MEGLSTLVNLHVLDVSSN-KLTLV--DDIQNLSRLED  276 (352)
Q Consensus       208 L~~L~l~~~~--~~~~--~-~~~~~~~L~~L~l~~n~-l~~--~~~~~~~~~L~~L~l~~n-~l~~~--~~~~~~~~L~~  276 (352)
                      |+.|.++++.  ++..  . ....+|+|++|++++|. +++  +..+..+++|++|++++| .+++.  ..+..+++|+.
T Consensus       150 L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~  229 (284)
T d2astb2         150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  229 (284)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             cchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCE
Confidence            7777777652  2221  1 23467888888888764 543  455667788999999885 46543  55778899999


Q ss_pred             EEcCCCCCcchHHHHHHHhccccCccEeeccCCCc
Q 018662          277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQ  311 (352)
Q Consensus       277 L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~  311 (352)
                      |+++++ +++  +.+......+|+|+   +..+++
T Consensus       230 L~l~~~-~~d--~~l~~l~~~lp~L~---i~~~~l  258 (284)
T d2astb2         230 LQVFGI-VPD--GTLQLLKEALPHLQ---INCSHF  258 (284)
T ss_dssp             EECTTS-SCT--TCHHHHHHHSTTSE---ESCCCS
T ss_pred             EeeeCC-CCH--HHHHHHHHhCcccc---ccCccC
Confidence            999988 443  33344445566665   344443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.7e-14  Score=118.90  Aligned_cols=188  Identities=19%  Similarity=0.247  Sum_probs=121.5

Q ss_pred             CceeecCCCCCcCC-CCCCCCCcccEEEcCCCCCC--cchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           26 NTVLDLTSFQLHDL-DSVEFPTNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        26 l~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      ...+.++...+... .....+.+|++|++++|.+.  .++..+.++++|++|+++++.+.+.   .+..+..+++|++|+
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~---~~~~l~~~~~L~~L~  101 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP---IVNTLAKNSNLVRLN  101 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH---HHHHHTTCTTCSEEE
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcH---HHHHHhcCCCCcCcc
Confidence            45566665554432 22234578999999999887  3556678999999999999987764   344566788999999


Q ss_pred             ccCC-CCCC--CCC-CccccCCcEEEccCCC-cccc--cC-CcccccCcceEEccCCc--CCC--cc-cccCCCCCcEEE
Q 018662          103 LRDN-KLMK--IPD-VSIFKKLSVFDVSFNE-ITSS--HG-LSNVTDTLKELYVSKNE--VPK--ME-EIEHFHDLQILE  169 (352)
Q Consensus       103 l~~~-~l~~--l~~-~~~~~~L~~L~l~~~~-~~~~--~~-~~~~~~~L~~L~l~~~~--~~~--~~-~~~~~~~L~~L~  169 (352)
                      +++| .++.  +.. ...+++|++|++++|. +...  .. ....++.|+.|+++++.  +..  +. .+..+++|++|+
T Consensus       102 Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~  181 (284)
T d2astb2         102 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  181 (284)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             ccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccc
Confidence            9987 5552  222 3567899999998874 3221  11 11225678888888753  222  11 234577788888


Q ss_pred             cCCCc-cC--CcccccCCCCCcEEEccCC-cccee---cCCCCCCCCEEEcCCC
Q 018662          170 FGSNR-LR--VMENLQNLTNLQELWLGRN-RIKVV---NLCGLKCIKKISLQSN  216 (352)
Q Consensus       170 l~~~~-l~--~~~~~~~~~~L~~L~l~~~-~l~~~---~~~~~~~L~~L~l~~~  216 (352)
                      +++|. ++  .+..+..+++|++|++++| .+++.   .+..+++|+.|++.++
T Consensus       182 L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            87754 32  3445666777777777764 34433   3445666777776665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.34  E-value=5.4e-13  Score=116.50  Aligned_cols=228  Identities=19%  Similarity=0.212  Sum_probs=129.0

Q ss_pred             CCcccEEEcCCCCCC-----cchhhhhcCCCCcEEeccCCccCccccc---c----ccccccCCCCcEEEccCCCCCCCC
Q 018662           45 PTNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDDAAIE---P----ISRWDALAGLEELILRDNKLMKIP  112 (352)
Q Consensus        45 ~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~---~----~~~~~~l~~L~~L~l~~~~l~~l~  112 (352)
                      ...+++|++++|.+.     .+...+..+++|+.++++++........   .    ...+..+++|+.|++++|.+....
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            366777777777665     2333456667777887776644322111   1    122345677888888877766421


Q ss_pred             -----C-CccccCCcEEEccCCCcccccC--C------------cccccCcceEEccCCcCCCcccccCCCCCcEEEcCC
Q 018662          113 -----D-VSIFKKLSVFDVSFNEITSSHG--L------------SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS  172 (352)
Q Consensus       113 -----~-~~~~~~L~~L~l~~~~~~~~~~--~------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  172 (352)
                           . +...++|++|++++|.+.....  .            ....+.|+.+.++++.+......             
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~-------------  176 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK-------------  176 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH-------------
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccc-------------
Confidence                 1 3456778888888776643110  0            00123344444444433321000             


Q ss_pred             CccCCcccccCCCCCcEEEccCCcccee--------cCCCCCCCCEEEcCCCcCCCC------cCccccccCcEEECCCC
Q 018662          173 NRLRVMENLQNLTNLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHN  238 (352)
Q Consensus       173 ~~l~~~~~~~~~~~L~~L~l~~~~l~~~--------~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n  238 (352)
                         .....+..++.++.+++++|.+...        .+..+++|+.|++++|.++..      ..+..+++|++|++++|
T Consensus       177 ---~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         177 ---EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             ---HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ---cccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence               0001123344555555555554431        234556677777777765432      23556778888888888


Q ss_pred             CCCCC------CCC--CCCCCCcEEEcCCCcCCCc------cccc-CCCCCCeEEcCCCCCcchH
Q 018662          239 GISKM------EGL--STLVNLHVLDVSSNKLTLV------DDIQ-NLSRLEDLWLNDNQIESLE  288 (352)
Q Consensus       239 ~l~~~------~~~--~~~~~L~~L~l~~n~l~~~------~~~~-~~~~L~~L~l~~n~i~~~~  288 (352)
                      .+++.      ..+  .....|++|++++|+++..      ..+. .++.|+.|++++|.+..-+
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            77652      111  2346799999999998653      2332 5678999999999987643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=8e-14  Score=111.64  Aligned_cols=112  Identities=26%  Similarity=0.361  Sum_probs=75.9

Q ss_pred             CCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCC-CCCCCcEEEcCCCcCCCcccccCCCCCCeEEcC
Q 018662          202 LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS-TLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLN  280 (352)
Q Consensus       202 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~  280 (352)
                      +..+++|++|++++|.++.++.+..+++|+.|++++|.++.++.+. .+++|+.|++++|.++.++.+..+++|+.|+++
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~  123 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS  123 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEES
T ss_pred             HhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4455667777777777776666667777777777777777665432 234677777777777777666667777777777


Q ss_pred             CCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          281 DNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       281 ~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      +|.|+.+++.  ..+..+++|+.|++++||+....
T Consensus       124 ~N~i~~~~~~--~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         124 NNKITNWGEI--DKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             EEECCCHHHH--HHHTTTTTCSEEEECSSHHHHHH
T ss_pred             cchhcccccc--ccccCCCccceeecCCCccccCc
Confidence            7777766532  23466777777777777654443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=2.5e-14  Score=114.62  Aligned_cols=120  Identities=25%  Similarity=0.328  Sum_probs=71.1

Q ss_pred             CCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEE
Q 018662           45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFD  124 (352)
Q Consensus        45 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~  124 (352)
                      +++|++|++++|+|+.++ .+.++++|++|++++|.++...    +....++.|++|++++|.++.++.+..+++|+.|+
T Consensus        47 L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~----~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIE----NLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCS----SHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEE
T ss_pred             ccccceeECcccCCCCcc-cccCCccccChhhccccccccc----ccccccccccccccccccccccccccccccccccc
Confidence            466667777776666664 3666667777777766665431    11223445666777666666665566666677777


Q ss_pred             ccCCCcccccC--CcccccCcceEEccCCcCCCc------------ccccCCCCCcEEE
Q 018662          125 VSFNEITSSHG--LSNVTDTLKELYVSKNEVPKM------------EEIEHFHDLQILE  169 (352)
Q Consensus       125 l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~------------~~~~~~~~L~~L~  169 (352)
                      +++|.+..+..  ....+++|+.|++++|.+...            ..+..+++|+.|+
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            77666655432  223356677777776654331            0145567777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.2e-11  Score=93.13  Aligned_cols=108  Identities=22%  Similarity=0.253  Sum_probs=86.5

Q ss_pred             CCCCCCEEEcCCCcCCCCc-CccccccCcEEECCCC-CCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeE
Q 018662          204 GLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHN-GISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDL  277 (352)
Q Consensus       204 ~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n-~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L  277 (352)
                      .+...+.++..++.....+ .+..+++++.|++.++ .++.++  .|..+++|+.|++++|+++.+  ..+..+++|++|
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            3445667777777776664 5667888999999766 488764  588899999999999999988  568889999999


Q ss_pred             EcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662          278 WLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI  315 (352)
Q Consensus       278 ~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  315 (352)
                      ++++|+|+.++.   ..+.. ..|++|+|++|||.|++
T Consensus        86 ~Ls~N~l~~l~~---~~~~~-~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          86 NLSFNALESLSW---KTVQG-LSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             ECCSSCCSCCCS---TTTCS-CCCCEEECCSSCCCCCG
T ss_pred             eccCCCCcccCh---hhhcc-ccccccccCCCcccCCc
Confidence            999999998874   33333 46999999999999888

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=6.9e-11  Score=90.34  Aligned_cols=103  Identities=22%  Similarity=0.138  Sum_probs=71.1

Q ss_pred             CceeecCCCCCcCCCC-CCCCCcccEEEcCCC-CCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662           26 NTVLDLTSFQLHDLDS-VEFPTNLTELDLTAN-RLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (352)
Q Consensus        26 l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~-~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  102 (352)
                      ...++++++.+...+. +...+++++|++.++ .++.++.. |.++++|+.|++++|.++.+.   ...|..+++|++|+
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~---~~~f~~l~~L~~L~   86 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA---PDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC---TTGGGSCSCCCEEE
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc---ccccccccccccee
Confidence            3457777777766543 344577888888665 47777654 777888888888888877752   34566677888888


Q ss_pred             ccCCCCCCCCC-CccccCCcEEEccCCCcc
Q 018662          103 LRDNKLMKIPD-VSIFKKLSVFDVSFNEIT  131 (352)
Q Consensus       103 l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~  131 (352)
                      +++|.++.++. .....+|++|++++|++.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCccc
Confidence            88888887775 333446777888777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.1e-08  Score=75.05  Aligned_cols=106  Identities=18%  Similarity=0.095  Sum_probs=63.4

Q ss_pred             cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (352)
Q Consensus        25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  104 (352)
                      ..+.|++++.+..  +.+.....+..+....+....++..+.++++|++|++++|.++...+ ....+..+++|+.|+++
T Consensus        23 ~~~~Ldls~l~~~--~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~-~~~~~~~l~~L~~L~Ls   99 (162)
T d1koha1          23 SQQALDLKGLRSD--PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNLS   99 (162)
T ss_dssp             SSCCBCCCCCSSC--TTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSG-GGTHHHHSTTCCCCCCT
T ss_pred             hhCeeecccCCCC--chhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCch-hHHHHhhCCcccccccc
Confidence            4556666654322  22222222222332233223344445678999999999998887532 12334568888888888


Q ss_pred             CCCCCCCCCC--ccccCCcEEEccCCCcccc
Q 018662          105 DNKLMKIPDV--SIFKKLSVFDVSFNEITSS  133 (352)
Q Consensus       105 ~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~  133 (352)
                      +|.++.++.+  .....|+.+++++|++...
T Consensus       100 ~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1         100 GNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             TSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             cCccccchhhhhhhccccceeecCCCCcCcC
Confidence            8888887762  2334678888888877643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.8e-07  Score=68.39  Aligned_cols=80  Identities=24%  Similarity=0.402  Sum_probs=48.5

Q ss_pred             ccccCcEEECCCCCCCCCCCC----CCCCCCcEEEcCCCcCCCcccc--cCCCCCCeEEcCCCCCcch----HHHHHHHh
Q 018662          226 ECIALEELYLSHNGISKMEGL----STLVNLHVLDVSSNKLTLVDDI--QNLSRLEDLWLNDNQIESL----ESIVEAVA  295 (352)
Q Consensus       226 ~~~~L~~L~l~~n~l~~~~~~----~~~~~L~~L~l~~n~l~~~~~~--~~~~~L~~L~l~~n~i~~~----~~~~~~~~  295 (352)
                      .++.|+.|++++|+++.++.+    ..+++|+.|++++|.++.++.+  ....+|+.+++++|++...    +......+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            466677777777777665432    3456677777777777666322  1234577777777776532    23344556


Q ss_pred             ccccCccEee
Q 018662          296 GSRETLTTIY  305 (352)
Q Consensus       296 ~~~~~L~~L~  305 (352)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            6677777764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.93  E-value=4.5e-06  Score=63.61  Aligned_cols=107  Identities=17%  Similarity=0.159  Sum_probs=69.9

Q ss_pred             CCCCCCEEEcCCC-cCCCC------cCccccccCcEEECCCCCCCCC--C----CCCCCCCCcEEEcCCCcCCCc-----
Q 018662          204 GLKCIKKISLQSN-RLTSM------KGFEECIALEELYLSHNGISKM--E----GLSTLVNLHVLDVSSNKLTLV-----  265 (352)
Q Consensus       204 ~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~n~l~~~--~----~~~~~~~L~~L~l~~n~l~~~-----  265 (352)
                      ..+.|+.|+++++ .+...      ..+...+.|+.|++++|.+..-  .    .+...+.|++|++++|.++..     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3466777777654 23322      1244566778888887776541  1    234557788888888888653     


Q ss_pred             -ccccCCCCCCeEEcCCCCCcchH----HHHHHHhccccCccEeeccCCC
Q 018662          266 -DDIQNLSRLEDLWLNDNQIESLE----SIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       266 -~~~~~~~~L~~L~l~~n~i~~~~----~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                       ..+...+.|++|++++|.+..+.    ..+..++...++|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence             45667788999999988766542    1234455667899999988875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.91  E-value=8e-06  Score=62.19  Aligned_cols=115  Identities=13%  Similarity=0.123  Sum_probs=77.9

Q ss_pred             ccccCcEEECCCC-CCCC--C----CCCCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchH-HHH
Q 018662          226 ECIALEELYLSHN-GISK--M----EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLE-SIV  291 (352)
Q Consensus       226 ~~~~L~~L~l~~n-~l~~--~----~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~-~~~  291 (352)
                      ..+.|+.|+++++ .+..  +    ..+...+.|++|++++|.+...      ..+...+.|++|++++|.|++-. ..+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4689999999975 4543  1    2356778899999999998743      34556789999999999999632 223


Q ss_pred             HHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeee
Q 018662          292 EAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFC  347 (352)
Q Consensus       292 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (352)
                      ...+...++|++|++++|.    +..+..+....+...+   .-.+.+..+++.++
T Consensus        93 ~~aL~~n~sL~~L~l~~n~----~~~~g~~~~~~l~~~L---~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR----QSVLGNQVEMDMMMAI---EENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS----SCCCCHHHHHHHHHHH---HHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCc----CCCccHHHHHHHHHHH---HhCCCccEeeCcCC
Confidence            4456777999999999984    2223333333333332   23455666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.43  E-value=5.6e-05  Score=57.20  Aligned_cols=107  Identities=12%  Similarity=0.116  Sum_probs=69.4

Q ss_pred             CCCCCCEEEcCCC-cCCCC------cCccccccCcEEECCCCCCCCC------CCCCCCCCCcEEEcCCCcCCCc-----
Q 018662          204 GLKCIKKISLQSN-RLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV-----  265 (352)
Q Consensus       204 ~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~-----  265 (352)
                      ..+.|+.|+++++ .++..      ..+...+.|+.|++++|.+..-      ..+...+.++.+++++|.++..     
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4466777777653 34322      1234567788888888777541      1234567788888888887543     


Q ss_pred             -ccccCCCCCCeEEcC--CCCCcchH-HHHHHHhccccCccEeeccCCC
Q 018662          266 -DDIQNLSRLEDLWLN--DNQIESLE-SIVEAVAGSRETLTTIYLENNP  310 (352)
Q Consensus       266 -~~~~~~~~L~~L~l~--~n~i~~~~-~~~~~~~~~~~~L~~L~l~~n~  310 (352)
                       ..+...++|++++++  +|.+.+-. ..+...+..++.|++|++..+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence             456677888886665  56676422 2334455678999999998875

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.17  E-value=9.1e-05  Score=56.00  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=75.6

Q ss_pred             cccccCcEEECCC-CCCCCC------CCCCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchH-HH
Q 018662          225 EECIALEELYLSH-NGISKM------EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLE-SI  290 (352)
Q Consensus       225 ~~~~~L~~L~l~~-n~l~~~------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~-~~  290 (352)
                      ...|.|+.|++++ +.++.-      ..+...+.|++|++++|.++..      ..+...++++.+++++|.++.-. ..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4568999999997 456541      2356788999999999998654      34566789999999999998532 22


Q ss_pred             HHHHhccccCccEeecc--CCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeee
Q 018662          291 VEAVAGSRETLTTIYLE--NNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQ  348 (352)
Q Consensus       291 ~~~~~~~~~~L~~L~l~--~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (352)
                      +...+..+++|+.++|.  +|++..       +....+...+   .-++++..+++..+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~-------~~~~~La~~L---~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGN-------NVEMEIANML---EKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCH-------HHHHHHHHHH---HHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcH-------HHHHHHHHHH---HhCCCcCEEeCcCCC
Confidence            33456677889986665  453322       2223332222   236777777765543