Citrus Sinensis ID: 018665
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | 2.2.26 [Sep-21-2011] | |||||||
| E9L7A5 | 479 | Bifunctional aspartate am | N/A | no | 0.963 | 0.707 | 0.843 | 1e-174 | |
| Q9SIE1 | 475 | Bifunctional aspartate am | yes | no | 0.923 | 0.684 | 0.824 | 1e-160 | |
| Q5F4K8 | 492 | Aspartate aminotransferas | N/A | no | 0.892 | 0.638 | 0.790 | 1e-147 | |
| Q02635 | 400 | Aspartate aminotransferas | yes | no | 0.883 | 0.777 | 0.419 | 7e-68 | |
| Q9ZE56 | 399 | Aspartate aminotransferas | yes | no | 0.880 | 0.776 | 0.423 | 2e-66 | |
| P58350 | 410 | Aspartate aminotransferas | no | no | 0.877 | 0.753 | 0.418 | 3e-66 | |
| Q55128 | 389 | Aspartate aminotransferas | N/A | no | 0.869 | 0.786 | 0.4 | 3e-66 | |
| Q68XV9 | 399 | Aspartate aminotransferas | yes | no | 0.897 | 0.791 | 0.415 | 5e-66 | |
| Q1RGV0 | 399 | Aspartate aminotransferas | yes | no | 0.897 | 0.791 | 0.425 | 2e-65 | |
| Q06191 | 410 | Aspartate aminotransferas | no | no | 0.877 | 0.753 | 0.408 | 3e-65 |
| >sp|E9L7A5|PAT_PETHY Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase OS=Petunia hybrida PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 612 bits (1579), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/344 (84%), Positives = 321/344 (93%), Gaps = 5/344 (1%)
Query: 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 68
GT+++R S + +ENGLSYTPDQILVSNGAKQSI+QAVLAVCSPGDEV+IPAP
Sbjct: 141 GTMELRSAISHKLK-----EENGLSYTPDQILVSNGAKQSIIQAVLAVCSPGDEVLIPAP 195
Query: 69 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 128
+WVSYPEMAR+ADATPVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+
Sbjct: 196 YWVSYPEMARLADATPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPR 255
Query: 129 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 188
LL++IA IVA+HPRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMT
Sbjct: 256 KLLEQIAEIVARHPRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMT 315
Query: 189 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248
GWRLGYIAGPKHF+AACNKIQSQFTSGASSISQKA VAALGLGYAGGE+V+ MVK+FRER
Sbjct: 316 GWRLGYIAGPKHFIAACNKIQSQFTSGASSISQKAAVAALGLGYAGGELVATMVKSFRER 375
Query: 249 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308
RD+LVKSFGE+EGVK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDKAQVA
Sbjct: 376 RDYLVKSFGEIEGVKISEPRGAFYLFIDLSSYYGVEVDGFGSINNSESLCRYLLDKAQVA 435
Query: 309 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 352
LVPGDAFGDDTCIRISYAASL+TLQAAVERIKK L+T++P VPV
Sbjct: 436 LVPGDAFGDDTCIRISYAASLSTLQAAVERIKKALVTIKPPVPV 479
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Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Can use 2-oxoglutarate, oxaloacetate and prephenate as substrates, but not phenylpyruvate or 4-hydroxyphenylpyruvate. Petunia hybrida (taxid: 4102) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 7EC: 9 |
| >sp|Q9SIE1|PAT_ARATH Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase OS=Arabidopsis thaliana GN=PAT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 563 bits (1450), Expect = e-160, Method: Compositional matrix adjust.
Identities = 268/325 (82%), Positives = 296/325 (91%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ENGLSY PDQILVSNGAKQS+LQAVLAVCSPGDEVIIPAP+WVSY E AR+ADATPV++
Sbjct: 151 EENGLSYAPDQILVSNGAKQSLLQAVLAVCSPGDEVIIPAPYWVSYTEQARLADATPVVI 210
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PT+IS NFLLDPK LESKLTEKSRLLILCSPSNPTGSVYPK+LL+EIARI+AKHPRLLVL
Sbjct: 211 PTKISNNFLLDPKDLESKLTEKSRLLILCSPSNPTGSVYPKSLLEEIARIIAKHPRLLVL 270
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
SDEIYEHIIYAPATHTSFASLP M+ERTLTVNGFSKAFAMTGWRLGY+AGPKH VAAC+K
Sbjct: 271 SDEIYEHIIYAPATHTSFASLPDMYERTLTVNGFSKAFAMTGWRLGYLAGPKHIVAACSK 330
Query: 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
+Q Q +SGASSI+QKAGVAALGLG AGGE V++MVKA+RERRDFLVKS G+++GVK+SEP
Sbjct: 331 LQGQVSSGASSIAQKAGVAALGLGKAGGETVAEMVKAYRERRDFLVKSLGDIKGVKISEP 390
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 327
QGAFYLFIDFS YYGSEAEGFG I +S SL Y LDK QVA+VPGDAFGDD+CIRISYA
Sbjct: 391 QGAFYLFIDFSAYYGSEAEGFGLINDSSSLALYFLDKFQVAMVPGDAFGDDSCIRISYAT 450
Query: 328 SLTTLQAAVERIKKGLLTLRPGVPV 352
SL LQAAVE+I+K L LR V V
Sbjct: 451 SLDVLQAAVEKIRKALEPLRATVSV 475
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Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Required for early development of the embryo. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q5F4K8|PAT_PINPS Aspartate aminotransferase OS=Pinus pinaster GN=AAT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/315 (79%), Positives = 278/315 (88%), Gaps = 1/315 (0%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQA-VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
+ENGLSYTPDQILVSNGAKQ I+ A VLAVCSPGDEVIIPAPFWVSY EMAR+ADATPVI
Sbjct: 163 EENGLSYTPDQILVSNGAKQCIMAAAVLAVCSPGDEVIIPAPFWVSYTEMARLADATPVI 222
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
+PT +S++FLL+P+V SKL E SRLLILCSPSNPTGSVYP+ LL+EIA+IVAKHP+LLV
Sbjct: 223 IPTLLSDDFLLNPEVFSSKLNENSRLLILCSPSNPTGSVYPRELLEEIAKIVAKHPKLLV 282
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
LSDEIYEHI+Y PA HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY+AGPKHFV AC
Sbjct: 283 LSDEIYEHIMYPPAKHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYLAGPKHFVTACG 342
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
+IQSQ TSGASSISQKAGVAAL LGYAG E VS MVKA+RERRDFLV+ +EGVK+
Sbjct: 343 RIQSQSTSGASSISQKAGVAALALGYAGSEAVSTMVKAYRERRDFLVQRLQAMEGVKLPV 402
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
PQGAFYLF DFS+YYG+E E FG I SE+LCR+ L+KAQVALVPGDAFG+D CIRISYA
Sbjct: 403 PQGAFYLFPDFSSYYGTEVEDFGVINGSEALCRFFLEKAQVALVPGDAFGNDDCIRISYA 462
Query: 327 ASLTTLQAAVERIKK 341
ASL TL+ A+ I+K
Sbjct: 463 ASLDTLRTAINNIEK 477
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Prokaryotic-type aspartate aminotransferase. Specific for aspartate and no activity with glutamine, asparagine, alanine, histidine, leucine, methionine, lysine, arginine, tryptophan, tyrosine, phenylalanine or kynureine. Pinus pinaster (taxid: 71647) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q02635|AATA_RHIME Aspartate aminotransferase A OS=Rhizobium meliloti (strain 1021) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 132/315 (41%), Positives = 186/315 (59%), Gaps = 4/315 (1%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+EN L YT Q +V G KQ + A +A +PGDEV+IPAP+WVSYPEM + TPV +
Sbjct: 83 RENNLDYTAAQTIVGTGGKQILFNAFMATLNPGDEVVIPAPYWVSYPEMVALCGGTPVFV 142
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PTR NF L + L+ +T K++ + SPSNP+G+ Y L + ++ KHP + VL
Sbjct: 143 PTRQENNFKLKAEDLDRAITPKTKWFVFNSPSNPSGAAYSHEELKALTDVLMKHPHVWVL 202
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+D++YEH+ Y + + PG++ERTLT+NG SKA+AMTGWR+GY AGP H + A +
Sbjct: 203 TDDMYEHLTYGDFRFATPVEVEPGLYERTLTMNGVSKAYAMTGWRIGYAAGPLHLIKAMD 262
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
IQ Q TSGA+SI+Q A V AL + + + + F+ RRD +V + +G+
Sbjct: 263 MIQGQQTSGAASIAQWAAVEALN---GPQDFIGRNKEIFQGRRDLVVSMLNQAKGISCPT 319
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
P+GAFY++ + G A IE E LL+ VA+V G AFG RISYA
Sbjct: 320 PEGAFYVYPSCAGLIGKTAPSGKVIETDEDFVSELLETEGVAVVHGSAFGLGPNFRISYA 379
Query: 327 ASLTTLQAAVERIKK 341
S L+ A RI++
Sbjct: 380 TSEALLEEACRRIQR 394
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Required for symbiotic nitrogen fixation. Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9ZE56|AAT_RICPR Aspartate aminotransferase OS=Rickettsia prowazekii (strain Madrid E) GN=aatA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 189/314 (60%), Gaps = 4/314 (1%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+EN + Y D+I+VS G KQ I +A GDEVIIP P+WVSYP+M ++ TPV +
Sbjct: 83 RENNIDYELDEIIVSTGGKQVIYNLFMASLDKGDEVIIPVPYWVSYPDMVALSTGTPVFV 142
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
I NF L + LE +T+K++ LI+ SPSNPTG+ Y L+ IA+ + K+P + ++
Sbjct: 143 NCGIENNFKLSVEALEHSITDKTKWLIINSPSNPTGAGYNCKELENIAKTLRKYPNVNIM 202
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
SD+IYEHI + + A + P + ER TVNG SKA++MTGWR+GY AG K + A
Sbjct: 203 SDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSMTGWRIGYGAGSKALIKAMT 262
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
IQSQ TS SISQ A + AL + + F+++RD + E+ + +
Sbjct: 263 IIQSQSTSNPCSISQMAAIEALN---GTQDYIKSNALNFQKKRDLALSILEEVTYFECYK 319
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
P+GAFYLF+ +G++ + I NS + YLL++A+VA+VPG AFG D RISYA
Sbjct: 320 PEGAFYLFVKCDKIFGTKTKSGRIIANSNNFSEYLLEEAKVAVVPGIAFGLDGYFRISYA 379
Query: 327 ASLTTLQAAVERIK 340
S+ L+ A RIK
Sbjct: 380 TSMQELEEACIRIK 393
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Rickettsia prowazekii (strain Madrid E) (taxid: 272947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P58350|AATB_RHIME Aspartate aminotransferase B OS=Rhizobium meliloti (strain 1021) GN=aatB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 187/313 (59%), Gaps = 4/313 (1%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ENGL+Y D+I V+ GAKQ + A++A PGDEVIIP P+W SY ++ I + PV++
Sbjct: 93 RENGLAYELDEITVATGAKQILFNAMMASLDPGDEVIIPTPYWTSYSDIVHICEGKPVLI 152
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
S F L + LE+ +T ++R ++L SPSNP+G+ Y + ++ +HP + +L
Sbjct: 153 ACDASSGFRLTAEKLEAAITPRTRWVLLNSPSNPSGAAYSAADYRPLLEVLLRHPHVWLL 212
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
D++YEHI+Y + A L PG+ RTLTVNG SKA+AMTGWR+GY GP+ + A
Sbjct: 213 VDDMYEHIVYDGFRFVTPAQLEPGLKNRTLTVNGVSKAYAMTGWRIGYAGGPRELIKAMA 272
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
+QSQ TS SSISQ A VAAL + + + ++F+ RRD +V ++G+
Sbjct: 273 VVQSQATSCPSSISQAASVAALN---GPQDFLKERTESFQRRRDLVVNGLNAIDGLDCRV 329
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
P+GAFY F + G +I+ C YLL+ A VA+VPG AFG RISYA
Sbjct: 330 PEGAFYTFSGCAGVLGKVTPSGKRIKTDTDFCAYLLEDAHVAVVPGSAFGLSPFFRISYA 389
Query: 327 ASLTTLQAAVERI 339
S L+ A+ERI
Sbjct: 390 TSEAELKEALERI 402
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Involved in symbiotic nitrogen fixation. Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q55128|AAT_SYNY3 Aspartate aminotransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=aspC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 195/320 (60%), Gaps = 14/320 (4%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
++N L Y ILV+NG K S+ +LA+ GDEVIIPAP+W+SYPEM R+A+ TPVI+
Sbjct: 82 EKNNLPYEAANILVTNGGKHSLFNLMLAMIEQGDEVIIPAPYWLSYPEMVRLAEGTPVIV 141
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
T + ++ + P+ L +T KS+L +L SPSNPTG+VY + +A ++ ++ L V+
Sbjct: 142 NTTAATDYKITPEQLRQAITSKSKLFVLNSPSNPTGAVYTPAEIRALAAVILEYEDLYVV 201
Query: 148 SDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
SDEIYE I+Y H S ++ +++RT+ NGF+K+++MTGWR+GY+AG + AC+
Sbjct: 202 SDEIYERILYDGTEHLSIGAVNDEIFQRTIISNGFAKSYSMTGWRVGYLAGELPLIQACS 261
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
IQ TS + +Q +AAL V MVKAF ERR +V+ ++ G+
Sbjct: 262 TIQGHSTSNVCTFAQYGAIAAL---ENPQTCVETMVKAFTERRQVIVEGINQIAGLSCPN 318
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
P+GAFY+F+D + G +E S LL+ QVA++PG AFG D C+R SYA
Sbjct: 319 PKGAFYVFVDIAK------TGLNSLEFSAR----LLESHQVAVIPGAAFGADDCVRFSYA 368
Query: 327 ASLTTLQAAVERIKKGLLTL 346
+ T++ + +++ + TL
Sbjct: 369 TDMDTIKQGLAELERFVSTL 388
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Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q68XV9|AAT_RICTY Aspartate aminotransferase OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (641), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 191/320 (59%), Gaps = 4/320 (1%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+EN + Y D+I+VS G KQ I +A GDEVIIP P+WVSYP+M ++ TP+ +
Sbjct: 83 RENNIDYELDEIIVSTGGKQVIYNLFMASLDKGDEVIIPVPYWVSYPDMVALSTGTPIFV 142
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
I NF L + LE +T+K++ LI+ SPSNPTG+ Y L+ IA+ + K+P + ++
Sbjct: 143 NCGIENNFKLTVEALERSITDKTKWLIINSPSNPTGAGYNCKELENIAKTLRKYPNVNIM 202
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
SD+IYEHI + + A + P + ER TVNG SKA++MTGWR+GY AG K + A
Sbjct: 203 SDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSMTGWRIGYGAGSKALIKAMT 262
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
IQSQ TS SISQ A + AL + + F+++RD + ++ + +
Sbjct: 263 VIQSQSTSNPCSISQMAAIEALN---GTQDYIKPNALNFQKKRDLALSILEKVIYFECYK 319
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
P+GAFYLF+ +G++ + I NS YLL++A+VA+VPG AFG D RISYA
Sbjct: 320 PEGAFYLFVKCDKIFGTKTKSGKIIANSNHFSEYLLEEAKVAVVPGVAFGLDGYFRISYA 379
Query: 327 ASLTTLQAAVERIKKGLLTL 346
S+ L+ A RIK+ TL
Sbjct: 380 TSMQELKEACIRIKQACNTL 399
|
Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q1RGV0|AAT_RICBR Aspartate aminotransferase OS=Rickettsia bellii (strain RML369-C) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (637), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/320 (42%), Positives = 194/320 (60%), Gaps = 4/320 (1%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+EN + Y ++I+VS G KQ I +A + GDEVIIPAP+WVSYP+M +A+ TPV
Sbjct: 83 RENNIDYDLEEIIVSTGGKQVIYNLFMASLNKGDEVIIPAPYWVSYPDMVLLAEGTPVFA 142
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
I NF L + LE +T K++ LI+ SPSNPTG+ Y + L IA ++ KHP + V+
Sbjct: 143 NCGIESNFKLSGEALEQLITPKTKWLIINSPSNPTGASYSHSELKNIAEVLRKHPYVNVM 202
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
SD+IYEHI + + A + P + +R TVNG SKA++MTGWR+GY AG K + A
Sbjct: 203 SDDIYEHITFDGFKFYTLAEIAPDLKDRIFTVNGVSKAYSMTGWRIGYGAGSKALIKAMT 262
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
IQSQ TS SISQ A V AL G G +++ F ++RD + ++ + +
Sbjct: 263 IIQSQSTSNPCSISQVAAVEALN-GVQG--YIAQNALNFEKKRDLALSILQRVKYFECYK 319
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
P+GAFYLFI +G++ + I NS YLL++A+VA+VPG AFG + RISYA
Sbjct: 320 PEGAFYLFIKCDKIFGAKTKSGKVINNSNDFGEYLLEEAKVAVVPGIAFGLEGYFRISYA 379
Query: 327 ASLTTLQAAVERIKKGLLTL 346
S+ L+ A R+++ +L
Sbjct: 380 TSMEELEEACLRMERACGSL 399
|
Rickettsia bellii (strain RML369-C) (taxid: 336407) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q06191|AATB_RHIML Aspartate aminotransferase B OS=Rhizobium meliloti GN=aatB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 189/313 (60%), Gaps = 4/313 (1%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ENGL+Y D+I V+ GAKQ + A++A PGDEV+IP P+W SY ++ +I + P+++
Sbjct: 93 RENGLAYELDEITVATGAKQILFNAMMASLDPGDEVVIPTPYWTSYSDIVQICEGKPILI 152
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
S F L + LE+ +T ++R ++L SPSNP+G+ Y + ++ KHP + +L
Sbjct: 153 ACDASSGFRLTAQKLEAAITPRTRWVLLNSPSNPSGAAYSAADYRPLLDVLLKHPHVWLL 212
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
D++YEHI+Y + A L PG+ +RTLTVNG SKA+AMTGWR+GY GP+ + A
Sbjct: 213 VDDMYEHIVYDAFRFVTPARLEPGLKDRTLTVNGVSKAYAMTGWRIGYAGGPRALIKAMA 272
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
+QSQ TS SS+SQ A VAAL + + + ++F+ RR+ +V +EG+
Sbjct: 273 VVQSQATSCPSSVSQAASVAALN---GPQDFLKERTESFQRRRNLVVNGLNAIEGLDCRV 329
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
P+GAFY F + +IE+ C YLL+ + VA+VPG AFG RISYA
Sbjct: 330 PEGAFYTFSGCAGVARRVTPSGKRIESDTDFCAYLLEDSHVAVVPGSAFGLSPYFRISYA 389
Query: 327 ASLTTLQAAVERI 339
S L+ A+ERI
Sbjct: 390 TSEAELKEALERI 402
|
Involved in symbiotic nitrogen fixation. Rhizobium meliloti (taxid: 382) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | ||||||
| 395406797 | 479 | RecName: Full=Bifunctional aspartate ami | 0.963 | 0.707 | 0.843 | 1e-173 | |
| 350540010 | 480 | prephenate aminotransferase [Solanum lyc | 0.923 | 0.677 | 0.88 | 1e-172 | |
| 224083747 | 410 | predicted protein [Populus trichocarpa] | 0.963 | 0.826 | 0.854 | 1e-171 | |
| 224096225 | 410 | predicted protein [Populus trichocarpa] | 0.923 | 0.792 | 0.892 | 1e-170 | |
| 296082448 | 476 | unnamed protein product [Vitis vinifera] | 0.894 | 0.661 | 0.911 | 1e-170 | |
| 225438653 | 410 | PREDICTED: bifunctional aspartate aminot | 0.894 | 0.768 | 0.911 | 1e-169 | |
| 449469136 | 475 | PREDICTED: bifunctional aspartate aminot | 0.960 | 0.711 | 0.849 | 1e-169 | |
| 255576156 | 484 | aspartate aminotransferase, putative [Ri | 0.963 | 0.700 | 0.819 | 1e-168 | |
| 356525505 | 464 | PREDICTED: bifunctional aspartate aminot | 0.943 | 0.715 | 0.849 | 1e-168 | |
| 388500244 | 475 | unknown [Medicago truncatula] | 0.943 | 0.698 | 0.843 | 1e-166 |
| >gi|395406797|sp|E9L7A5.1|PAT_PETHY RecName: Full=Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; Short=PhPPA-AT; Flags: Precursor gi|305855253|gb|ADM67557.1| prephenate aminotransferase [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust.
Identities = 290/344 (84%), Positives = 321/344 (93%), Gaps = 5/344 (1%)
Query: 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 68
GT+++R S + +ENGLSYTPDQILVSNGAKQSI+QAVLAVCSPGDEV+IPAP
Sbjct: 141 GTMELRSAISHKLK-----EENGLSYTPDQILVSNGAKQSIIQAVLAVCSPGDEVLIPAP 195
Query: 69 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 128
+WVSYPEMAR+ADATPVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+
Sbjct: 196 YWVSYPEMARLADATPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPR 255
Query: 129 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 188
LL++IA IVA+HPRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMT
Sbjct: 256 KLLEQIAEIVARHPRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMT 315
Query: 189 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248
GWRLGYIAGPKHF+AACNKIQSQFTSGASSISQKA VAALGLGYAGGE+V+ MVK+FRER
Sbjct: 316 GWRLGYIAGPKHFIAACNKIQSQFTSGASSISQKAAVAALGLGYAGGELVATMVKSFRER 375
Query: 249 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308
RD+LVKSFGE+EGVK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDKAQVA
Sbjct: 376 RDYLVKSFGEIEGVKISEPRGAFYLFIDLSSYYGVEVDGFGSINNSESLCRYLLDKAQVA 435
Query: 309 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 352
LVPGDAFGDDTCIRISYAASL+TLQAAVERIKK L+T++P VPV
Sbjct: 436 LVPGDAFGDDTCIRISYAASLSTLQAAVERIKKALVTIKPPVPV 479
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350540010|ref|NP_001234609.1| prephenate aminotransferase [Solanum lycopersicum] gi|311700557|gb|ADQ00383.1| prephenate aminotransferase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/325 (88%), Positives = 311/325 (95%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ENGLSYTPDQI+VSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+ADA PVIL
Sbjct: 156 EENGLSYTPDQIVVSNGAKQSIVQAVLAVCSPGDEVLIPAPYWVSYPEMARMADAMPVIL 215
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL+EIA IVA+HPRLLV+
Sbjct: 216 PTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEEIAEIVARHPRLLVI 275
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHFV+ACNK
Sbjct: 276 SDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHFVSACNK 335
Query: 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
+QSQFTSGASSISQKA VAALGLGYAGGE V+ MVKAFRERRDFLVKSFGE++GVK+SEP
Sbjct: 336 LQSQFTSGASSISQKAAVAALGLGYAGGEAVATMVKAFRERRDFLVKSFGEIDGVKISEP 395
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 327
+GAFYLFID S+YYG E +GFG I NSESLCRYLLDK+QVALVPGDAFGDDTCIRISYAA
Sbjct: 396 RGAFYLFIDLSSYYGVEVDGFGTINNSESLCRYLLDKSQVALVPGDAFGDDTCIRISYAA 455
Query: 328 SLTTLQAAVERIKKGLLTLRPGVPV 352
SL+TLQAAVERIKK L+TLRP VPV
Sbjct: 456 SLSTLQAAVERIKKALVTLRPPVPV 480
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083747|ref|XP_002307109.1| predicted protein [Populus trichocarpa] gi|222856558|gb|EEE94105.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/344 (85%), Positives = 317/344 (92%), Gaps = 5/344 (1%)
Query: 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 68
GT ++RV + Q+ +ENG+SY PDQILVSNGAKQSI QA+LAVCSPGDEVIIPAP
Sbjct: 72 GTQELRV--AICQKLK---EENGISYKPDQILVSNGAKQSIYQAILAVCSPGDEVIIPAP 126
Query: 69 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 128
FWVSYPEMAR+ADATPVILPT ISENFLLDPK LESKL EKSRLLILCSPSNPTGSVYPK
Sbjct: 127 FWVSYPEMARLADATPVILPTSISENFLLDPKQLESKLNEKSRLLILCSPSNPTGSVYPK 186
Query: 129 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 188
LL+EIA+IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT
Sbjct: 187 KLLEEIAKIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 246
Query: 189 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248
GWRLGY+AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE VS MV AFRER
Sbjct: 247 GWRLGYLAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEAVSTMVTAFRER 306
Query: 249 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308
RDFL+KSFGE+EGV +SEP GAFYLFIDFS+YYG+E EGFGKI++S++LCRYLLD+AQVA
Sbjct: 307 RDFLIKSFGEMEGVGLSEPLGAFYLFIDFSSYYGAEVEGFGKIDDSDALCRYLLDQAQVA 366
Query: 309 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 352
LVPG AFGDD+CIRISYAASLTTLQAAVERIKK LL L+ VPV
Sbjct: 367 LVPGVAFGDDSCIRISYAASLTTLQAAVERIKKALLPLKSAVPV 410
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096225|ref|XP_002310582.1| predicted protein [Populus trichocarpa] gi|222853485|gb|EEE91032.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 290/325 (89%), Positives = 308/325 (94%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ENG+SYTPDQILVSNGAKQSI QA+LAVCSPGDEVIIPAPFWVSYPEMAR+ADATPVIL
Sbjct: 86 EENGISYTPDQILVSNGAKQSIYQAMLAVCSPGDEVIIPAPFWVSYPEMARLADATPVIL 145
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PT ISENFLLDPK+LESKL+ KSRLLILCSPSNPTGSVY K LL+EIARIVAKHPRLLVL
Sbjct: 146 PTSISENFLLDPKLLESKLSAKSRLLILCSPSNPTGSVYSKKLLEEIARIVAKHPRLLVL 205
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
SDEIYEHIIYAPATH SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK
Sbjct: 206 SDEIYEHIIYAPATHISFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 265
Query: 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
IQSQFTSGASSISQKAGVAALGLGYAGGE VS MVKAF ERRDFL++SFGE+EGV+MSEP
Sbjct: 266 IQSQFTSGASSISQKAGVAALGLGYAGGEAVSTMVKAFMERRDFLIRSFGEMEGVRMSEP 325
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 327
QGAFYLFID S+YYG+EAEGFGKIE+S+SLCRYLLD+AQVALVPG AFGDD+CIRISYAA
Sbjct: 326 QGAFYLFIDTSSYYGTEAEGFGKIEDSDSLCRYLLDQAQVALVPGVAFGDDSCIRISYAA 385
Query: 328 SLTTLQAAVERIKKGLLTLRPGVPV 352
SLTTLQ AV RIKK LL L+ VPV
Sbjct: 386 SLTTLQEAVGRIKKALLPLKSAVPV 410
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082448|emb|CBI21453.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust.
Identities = 287/315 (91%), Positives = 303/315 (96%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ENGLSYTPD+ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR+ADATPVIL
Sbjct: 152 EENGLSYTPDEILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARLADATPVIL 211
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PT ISENFLLDPK LESKLTEKSRLLILCSPSNPTGSVY + LL+EIA+IVA+HPRLLVL
Sbjct: 212 PTLISENFLLDPKFLESKLTEKSRLLILCSPSNPTGSVYSRKLLEEIAQIVARHPRLLVL 271
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
SDEIYEHIIYAPATHTSFA+LPGMWERTLTVNGFSKAFAMTGWRLGY+AGPKHFVAAC K
Sbjct: 272 SDEIYEHIIYAPATHTSFAALPGMWERTLTVNGFSKAFAMTGWRLGYLAGPKHFVAACGK 331
Query: 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
IQSQFTSGASSISQKA VAALG+GYAGGE VS MVKAFRERRDFLVKSFGELEGVK+SEP
Sbjct: 332 IQSQFTSGASSISQKAAVAALGMGYAGGEAVSTMVKAFRERRDFLVKSFGELEGVKISEP 391
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 327
QGAFYLF+DFS+YYG+EAEGFG IENSESLCRYLLD+AQVALVPGDAFGDD CIRISYAA
Sbjct: 392 QGAFYLFLDFSSYYGAEAEGFGIIENSESLCRYLLDQAQVALVPGDAFGDDKCIRISYAA 451
Query: 328 SLTTLQAAVERIKKG 342
SL+TL AAVERIKK
Sbjct: 452 SLSTLHAAVERIKKA 466
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438653|ref|XP_002277000.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 287/315 (91%), Positives = 303/315 (96%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ENGLSYTPD+ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR+ADATPVIL
Sbjct: 86 EENGLSYTPDEILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARLADATPVIL 145
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PT ISENFLLDPK LESKLTEKSRLLILCSPSNPTGSVY + LL+EIA+IVA+HPRLLVL
Sbjct: 146 PTLISENFLLDPKFLESKLTEKSRLLILCSPSNPTGSVYSRKLLEEIAQIVARHPRLLVL 205
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
SDEIYEHIIYAPATHTSFA+LPGMWERTLTVNGFSKAFAMTGWRLGY+AGPKHFVAAC K
Sbjct: 206 SDEIYEHIIYAPATHTSFAALPGMWERTLTVNGFSKAFAMTGWRLGYLAGPKHFVAACGK 265
Query: 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
IQSQFTSGASSISQKA VAALG+GYAGGE VS MVKAFRERRDFLVKSFGELEGVK+SEP
Sbjct: 266 IQSQFTSGASSISQKAAVAALGMGYAGGEAVSTMVKAFRERRDFLVKSFGELEGVKISEP 325
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 327
QGAFYLF+DFS+YYG+EAEGFG IENSESLCRYLLD+AQVALVPGDAFGDD CIRISYAA
Sbjct: 326 QGAFYLFLDFSSYYGAEAEGFGIIENSESLCRYLLDQAQVALVPGDAFGDDKCIRISYAA 385
Query: 328 SLTTLQAAVERIKKG 342
SL+TL AAVERIKK
Sbjct: 386 SLSTLHAAVERIKKA 400
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469136|ref|XP_004152277.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Cucumis sativus] gi|449484357|ref|XP_004156861.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/345 (84%), Positives = 311/345 (90%), Gaps = 7/345 (2%)
Query: 9 GTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 67
GTL++R Q LK ENGLSYTPDQILVSNGAKQSILQAV+AVCSPGDEVIIPA
Sbjct: 137 GTLELR------QAICHKLKDENGLSYTPDQILVSNGAKQSILQAVVAVCSPGDEVIIPA 190
Query: 68 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 127
PFWVSYPEMAR+ADATPVILPT I NFLLDPK+LESK+TEKSRLLILCSPSNPTGSVYP
Sbjct: 191 PFWVSYPEMARLADATPVILPTHIDNNFLLDPKLLESKITEKSRLLILCSPSNPTGSVYP 250
Query: 128 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 187
K LL++IA IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM
Sbjct: 251 KELLEKIAEIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 310
Query: 188 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 247
TGWRLGYIAGPKHFV+AC KIQSQ TSGASSISQKA VAALG+GYAGGE V+ MVKAFRE
Sbjct: 311 TGWRLGYIAGPKHFVSACGKIQSQSTSGASSISQKAAVAALGMGYAGGEAVATMVKAFRE 370
Query: 248 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307
RRD+LVKSFGEL GVK+SEPQGAFYLF+DFS+YYG+E EGFG I NSESLCRYLL+K QV
Sbjct: 371 RRDYLVKSFGELAGVKISEPQGAFYLFLDFSSYYGAEVEGFGVINNSESLCRYLLEKGQV 430
Query: 308 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 352
ALVPGDAFGDDTCIRISYA SL+ LQAAVERIKK L RP VPV
Sbjct: 431 ALVPGDAFGDDTCIRISYAESLSVLQAAVERIKKALEAARPVVPV 475
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255576156|ref|XP_002528972.1| aspartate aminotransferase, putative [Ricinus communis] gi|223531562|gb|EEF33391.1| aspartate aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 282/344 (81%), Positives = 317/344 (92%), Gaps = 5/344 (1%)
Query: 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 68
GTL++R + +ENGLSY P++ILVSNGAKQSI+QAVLAVCSPGDEV+IPAP
Sbjct: 146 GTLEVRTAICHKLK-----EENGLSYAPNEILVSNGAKQSIVQAVLAVCSPGDEVLIPAP 200
Query: 69 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 128
FWVSYPE+AR+ADATPVI+PT ISENFL+DP++LESK++EKSRLLILCSPSNPTGSVYPK
Sbjct: 201 FWVSYPEIARLADATPVIVPTSISENFLMDPRLLESKISEKSRLLILCSPSNPTGSVYPK 260
Query: 129 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 188
LL+EIARIVAK+PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT
Sbjct: 261 ELLEEIARIVAKYPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 320
Query: 189 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248
GWRLGY+A P+HF+AACNKIQSQFTSGASSI+QKA VAALGLG+AGGE VS MVKAF+ER
Sbjct: 321 GWRLGYLAAPRHFLAACNKIQSQFTSGASSIAQKAAVAALGLGFAGGEAVSTMVKAFKER 380
Query: 249 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308
RDFL+KSFGE+EGV+MSEPQGAFYLFID S+YYG E EGFGKI++S+SLCRYLLD AQVA
Sbjct: 381 RDFLIKSFGEMEGVRMSEPQGAFYLFIDVSSYYGVEVEGFGKIDDSDSLCRYLLDNAQVA 440
Query: 309 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 352
+VPG AFGDD+CIRISYAASLTTLQAAVERIKK L+ L+P VPV
Sbjct: 441 VVPGGAFGDDSCIRISYAASLTTLQAAVERIKKALIPLKPAVPV 484
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525505|ref|XP_003531365.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust.
Identities = 288/339 (84%), Positives = 311/339 (91%), Gaps = 7/339 (2%)
Query: 9 GTLQMRVLWSFVQQFVINLKE-NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 67
GT+++R Q LKE NG+SYTPDQ++VSNGAKQSI QAVLAVCSPGDEVIIPA
Sbjct: 126 GTMELR------QAICRKLKEENGISYTPDQVVVSNGAKQSIAQAVLAVCSPGDEVIIPA 179
Query: 68 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 127
PFWVSYPEMAR+ADATPVILPT IS+NFLLDPK+LESK+TE+SRLLILCSPSNPTGSVYP
Sbjct: 180 PFWVSYPEMARLADATPVILPTLISDNFLLDPKLLESKITERSRLLILCSPSNPTGSVYP 239
Query: 128 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 187
K LL+EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAM
Sbjct: 240 KELLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAM 299
Query: 188 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 247
TGWRLGYIAGPKHFVAAC KIQSQFTSGASSI+QKA VAALGLG+AGGE VS MVKAFRE
Sbjct: 300 TGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGHAGGEAVSTMVKAFRE 359
Query: 248 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307
RRDFLVKSF E++GVK+SEPQGAFYLF+DFS YYG EAEGFGKIE+SESLCRYLLD QV
Sbjct: 360 RRDFLVKSFREIDGVKISEPQGAFYLFLDFSFYYGREAEGFGKIEDSESLCRYLLDVGQV 419
Query: 308 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 346
ALVPG AFGDDTCIRISYA SLTTLQAAVER+K+ L+ L
Sbjct: 420 ALVPGSAFGDDTCIRISYAESLTTLQAAVERVKRALIPL 458
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500244|gb|AFK38188.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust.
Identities = 286/339 (84%), Positives = 304/339 (89%), Gaps = 7/339 (2%)
Query: 9 GTLQMRVLWSFVQQFVINLKE-NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 67
GTL++R Q LKE NGL YTPDQI+V+NGAKQSI QAV+AVCSPGDEVIIPA
Sbjct: 137 GTLEIR------QAICHKLKEENGLDYTPDQIVVTNGAKQSITQAVIAVCSPGDEVIIPA 190
Query: 68 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 127
PFWVSYPEMAR+ADATPVILPT IS NFLLDPK+LESK+TEKSRLLILCSPSNPTGSVYP
Sbjct: 191 PFWVSYPEMARLADATPVILPTSISNNFLLDPKLLESKITEKSRLLILCSPSNPTGSVYP 250
Query: 128 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 187
K LL+EIA+IVAKHPRLLV+SDEIYEHIIYAP THTSFASLP MW RTLTVNGFSKAFAM
Sbjct: 251 KYLLEEIAKIVAKHPRLLVISDEIYEHIIYAPTTHTSFASLPRMWNRTLTVNGFSKAFAM 310
Query: 188 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 247
TGWRLGYIAGPKHF+AA KIQSQFTSG SSISQKAGVAALGLGYAGGE VS MVKA RE
Sbjct: 311 TGWRLGYIAGPKHFIAAVGKIQSQFTSGPSSISQKAGVAALGLGYAGGEAVSTMVKALRE 370
Query: 248 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307
RRD+LVKSF E++GVK+SEPQGAFYLFIDFS+YYG EAEGFGKIENSES CRYLLDK QV
Sbjct: 371 RRDYLVKSFSEIDGVKISEPQGAFYLFIDFSSYYGKEAEGFGKIENSESFCRYLLDKGQV 430
Query: 308 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 346
ALVPG AFGDDTCIRISYAASL TLQAAVE IKK L+ L
Sbjct: 431 ALVPGSAFGDDTCIRISYAASLPTLQAAVENIKKALIPL 469
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | ||||||
| UNIPROTKB|E9L7A5 | 479 | E9L7A5 "Bifunctional aspartate | 0.923 | 0.678 | 0.843 | 1.5e-147 | |
| TAIR|locus:2060435 | 475 | AAT "AT2G22250" [Arabidopsis t | 0.923 | 0.684 | 0.787 | 6e-135 | |
| TIGR_CMR|GSU_1242 | 399 | GSU_1242 "aspartate aminotrans | 0.900 | 0.794 | 0.433 | 3.2e-65 | |
| TIGR_CMR|CBU_0517 | 423 | CBU_0517 "aspartate aminotrans | 0.863 | 0.718 | 0.431 | 4.7e-64 | |
| TIGR_CMR|SPO_1264 | 400 | SPO_1264 "aspartate aminotrans | 0.883 | 0.777 | 0.412 | 8.8e-63 | |
| UNIPROTKB|Q0BXZ8 | 403 | aatA "Aspartate aminotransfera | 0.883 | 0.771 | 0.393 | 8.1e-60 | |
| TIGR_CMR|ECH_0732 | 398 | ECH_0732 "aspartate aminotrans | 0.872 | 0.771 | 0.408 | 3.2e-58 | |
| TIGR_CMR|CHY_0115 | 392 | CHY_0115 "putative aspartate a | 0.892 | 0.801 | 0.420 | 2.2e-57 | |
| TIGR_CMR|CHY_1491 | 392 | CHY_1491 "aspartate aminotrans | 0.880 | 0.790 | 0.384 | 2.9e-55 | |
| UNIPROTKB|Q2GK59 | 394 | aspC "Aspartate aminotransfera | 0.863 | 0.771 | 0.401 | 1.6e-54 |
| UNIPROTKB|E9L7A5 E9L7A5 "Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase" [Petunia x hybrida (taxid:4102)] | Back alignment and assigned GO terms |
|---|
Score = 1441 (512.3 bits), Expect = 1.5e-147, P = 1.5e-147
Identities = 274/325 (84%), Positives = 301/325 (92%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ENGLSYTPDQILVSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+ADATPVIL
Sbjct: 155 EENGLSYTPDQILVSNGAKQSIIQAVLAVCSPGDEVLIPAPYWVSYPEMARLADATPVIL 214
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL++IA IVA+HPRLLV+
Sbjct: 215 PTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEQIAEIVARHPRLLVI 274
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF+AACNK
Sbjct: 275 SDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHFIAACNK 334
Query: 208 IQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
IQSQFTSGASSISQK E+V+ MVK+FRERRD+LVKSFGE+EGVK+SEP
Sbjct: 335 IQSQFTSGASSISQKAAVAALGLGYAGGELVATMVKSFRERRDYLVKSFGEIEGVKISEP 394
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 327
+GAFYLFID S+YYG E +GFG I NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA
Sbjct: 395 RGAFYLFIDLSSYYGVEVDGFGSINNSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 454
Query: 328 SLTTLQAAVERIKKGLLTLRPGVPV 352
SL+TLQAAVERIKK L+T++P VPV
Sbjct: 455 SLSTLQAAVERIKKALVTIKPPVPV 479
|
|
| TAIR|locus:2060435 AAT "AT2G22250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1322 (470.4 bits), Expect = 6.0e-135, P = 6.0e-135
Identities = 256/325 (78%), Positives = 284/325 (87%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ENGLSY PDQILVSNGAKQS+LQAVLAVCSPGDEVIIPAP+WVSY E AR+ADATPV++
Sbjct: 151 EENGLSYAPDQILVSNGAKQSLLQAVLAVCSPGDEVIIPAPYWVSYTEQARLADATPVVI 210
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PT+IS NFLLDPK LESKLTEKSRLLILCSPSNPTGSVYPK+LL+EIARI+AKHPRLLVL
Sbjct: 211 PTKISNNFLLDPKDLESKLTEKSRLLILCSPSNPTGSVYPKSLLEEIARIIAKHPRLLVL 270
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
SDEIYEHIIYAPATHTSFASLP M+ERTLTVNGFSKAFAMTGWRLGY+AGPKH VAAC+K
Sbjct: 271 SDEIYEHIIYAPATHTSFASLPDMYERTLTVNGFSKAFAMTGWRLGYLAGPKHIVAACSK 330
Query: 208 IQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
+Q Q +SGASSI+QK E V++MVKA+RERRDFLVKS G+++GVK+SEP
Sbjct: 331 LQGQVSSGASSIAQKAGVAALGLGKAGGETVAEMVKAYRERRDFLVKSLGDIKGVKISEP 390
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 327
QGAFYLFIDFS YYGSEAEGFG I +S SL Y LDK QVA+VPGDAFGDD+CIRISYA
Sbjct: 391 QGAFYLFIDFSAYYGSEAEGFGLINDSSSLALYFLDKFQVAMVPGDAFGDDSCIRISYAT 450
Query: 328 SLTTLQAAVERIKKGLLTLRPGVPV 352
SL LQAAVE+I+K L LR V V
Sbjct: 451 SLDVLQAAVEKIRKALEPLRATVSV 475
|
|
| TIGR_CMR|GSU_1242 GSU_1242 "aspartate aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 139/321 (43%), Positives = 197/321 (61%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+++GL YT D+I V+ GAK ++ A+ GDEVIIP P+WVSYP+ +A TPV +
Sbjct: 82 RDHGLEYTRDEISVACGAKHTLYNISQALIQEGDEVIIPGPYWVSYPDQIVLAGGTPVFI 141
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
T S F + + LE +T ++ +IL SP NPTGS Y K+ L +A ++ KHP + V+
Sbjct: 142 MTDESTGFKITAEQLEKAITPRTVYVILNSPCNPTGSTYTKDELKALAAVLLKHPHVYVV 201
Query: 148 SDEIYEHIIYAPATHTSFA-SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
SD+IYE ++Y + + P + +RT+ VNG SKA++MTGWR+GY GPK +AA
Sbjct: 202 SDDIYEKLLYDGLEFCNIPMACPELKDRTIIVNGVSKAYSMTGWRIGYACGPKALMAAMT 261
Query: 207 KIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
K+QSQ TS A+SI+QK E V++MVK F +RR ++V + GV +
Sbjct: 262 KMQSQSTSNATSIAQKASVEALNGPQ---EPVAEMVKEFEKRRTYIVDRLNAIPGVTCFK 318
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
GAFY F +FS YG KIENS YLL+ A+VALVPG AFGDD R+SYA
Sbjct: 319 STGAFYAFPNFSGVYGKTTPAGKKIENSSDFAAYLLEDAKVALVPGIAFGDDRYARLSYA 378
Query: 327 ASLTTLQAAVERIKKGLLTLR 347
SL T++ ++RI++ + L+
Sbjct: 379 TSLETIKKGLDRIEEAIGNLK 399
|
|
| TIGR_CMR|CBU_0517 CBU_0517 "aspartate aminotransferase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 135/313 (43%), Positives = 197/313 (62%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
++N L+Y P +ILVS GAKQSI ++ + GDE IIPAP+WVSYP M ++A+A P+I+
Sbjct: 113 RDNHLNYEPSEILVSGGAKQSIYNVLMGTLNAGDEAIIPAPYWVSYPPMVQLAEAKPIII 172
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
I +NF L P L +T +SRLLIL SP+NP+G Y ++ L +A ++ +HP++L+L
Sbjct: 173 SATIDQNFKLTPGQLSQAITPQSRLLILNSPNNPSGVAYTESELKALADVLMEHPQILIL 232
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
SDEIYE+I++ + ++ P + +RT+ +NG SKA+AMTGWR+GY AGPK + A
Sbjct: 233 SDEIYEYILWGQNRFVNILNVCPELRDRTIIINGASKAYAMTGWRIGYAAGPKSIIQAMK 292
Query: 207 KIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
KIQSQ TS +SI+Q + M +A++ R D ++K+ +++GV
Sbjct: 293 KIQSQSTSSPNSIAQVAATTALGAQRGDF---AYMYEAYKTRHDLVLKALNQMKGVHCIP 349
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
GAFYLF D S + + G +E+ L YLLDK +VA+VPG AFG +R+S A
Sbjct: 350 ADGAFYLFPDVS----AAIQQLG-LEDDIKLGTYLLDKTKVAVVPGSAFGSPGHVRLSCA 404
Query: 327 ASLTTLQAAVERI 339
S LQ A+ER+
Sbjct: 405 TSTEKLQEALERL 417
|
|
| TIGR_CMR|SPO_1264 SPO_1264 "aspartate aminotransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 130/315 (41%), Positives = 192/315 (60%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+++GLSYTP Q+ V +G KQ++ A++A +PGDEVIIPAP+WVSYP+M + TPV++
Sbjct: 83 RDHGLSYTPAQVSVGSGGKQTLYNALMATLNPGDEVIIPAPYWVSYPDMVLLGGGTPVVV 142
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
T + F L P LE+ +T +++ I SPSNPTG+ Y ++ L + ++ +HP + V+
Sbjct: 143 ETALESAFKLTPAQLEAAITPRTKWFIFNSPSNPTGAGYSRDELKGLTDVLMRHPHVWVM 202
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
SD++YEH+ Y + A + PG++ERTLT NG SKA+AMTGWR+GY AGP +AA
Sbjct: 203 SDDMYEHLAYDGFAFCTPAQVEPGLYERTLTCNGTSKAYAMTGWRIGYAAGPVGLIAAMR 262
Query: 207 KIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
KIQSQ TS +ISQ E ++ F+ RRD ++ +EG+
Sbjct: 263 KIQSQSTSNPCTISQ---WAAVEALNGTQEFLAPNNALFKRRRDLVLSMLNAIEGIDCPT 319
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
P+GAFY++ + G +I++ E+ C LL++A VA+V G AFG R+SYA
Sbjct: 320 PEGAFYVYPSIAGLIGKTTPKGTRIDSDETFCTALLEEADVAVVFGAAFGLSPNFRVSYA 379
Query: 327 ASLTTLQAAVERIKK 341
AS L A RI++
Sbjct: 380 ASDAALTEACTRIQR 394
|
|
| UNIPROTKB|Q0BXZ8 aatA "Aspartate aminotransferase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 124/315 (39%), Positives = 189/315 (60%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ENGL+Y P Q+ VS G K + A +A + GDEV+IPAP+WVSYPEM + ATPV +
Sbjct: 86 RENGLTYKPSQVNVSPGGKAVLFNAFMATLNAGDEVVIPAPYWVSYPEMVLLCGATPVAV 145
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
P + L P+ LE+ +T K++ LIL SPSNPTG+ Y L +A ++ +HP++ +L
Sbjct: 146 PCGADTAYKLSPEKLEAAITPKTKWLILNSPSNPTGAAYTGAELKALADVLLRHPQVWIL 205
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+D++YEH++Y + + A + P +++RTLT+NG SKA+AMTGWR+GY AGP+ + A
Sbjct: 206 TDDMYEHLVYDGFEYKTIAQVEPALYDRTLTMNGVSKAYAMTGWRIGYAAGPEKLIGAMR 265
Query: 207 KIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
K+ Q TS SISQ V A+ +RR+ +V + G+ +
Sbjct: 266 KVMDQSTSNPCSISQWASVEALNGPQDFLPVFRA---AYAKRRNLMVDGLNQAAGIVCPK 322
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
P+GAFY++ + G + G I++ ++ LL++ +VA+V G+AFG RISYA
Sbjct: 323 PEGAFYVYPSCAGLIGKKTAGGAVIDSDKTFAAELLEQEKVAIVFGEAFGLPETFRISYA 382
Query: 327 ASLTTLQAAVERIKK 341
S L A+ RI++
Sbjct: 383 TSDAALTEALVRIQR 397
|
|
| TIGR_CMR|ECH_0732 ECH_0732 "aspartate aminotransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 128/313 (40%), Positives = 182/313 (58%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+++ L Y +QI V NGAKQ I +A + GDEVIIP+P+WVSYP++ +I+ PVI+
Sbjct: 83 QDHDLIYNVNQISVGNGAKQCIYNLFMATINSGDEVIIPSPYWVSYPDVVKISGGNPVIV 142
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
E F L P +LES +TEK++ LI+ SP+NPTG VY L IA ++ K+P + V+
Sbjct: 143 DC--GETFKLTPDILESVITEKTKWLIMNSPNNPTGLVYTYEELKSIAEVLLKYPNIYVM 200
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+D+IY IIY + A + P +++R T+NG SKA+AMTGWR+GYIAG ++A +
Sbjct: 201 TDDIYSKIIYDDLEFFTIAQVEPRLYDRVFTINGVSKAYAMTGWRIGYIAGDSRVISAIS 260
Query: 207 KIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
IQSQ T+ +SI+Q E + + K F RRD +V + + +
Sbjct: 261 VIQSQSTTNPNSIAQ---FASIQALAGDQEFLKERNKIFAARRDMMVDMVNNTSLLSVKK 317
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
PQGAFY+FI G I ++ +YLL+ VA+VPG+AFG RISYA
Sbjct: 318 PQGAFYVFISCKKLIGKSTRNGLVINSAMDFTKYLLEDYNVAVVPGEAFGAQGFFRISYA 377
Query: 327 ASLTTLQAAVERI 339
S L A +RI
Sbjct: 378 TSTEHLSKACDRI 390
|
|
| TIGR_CMR|CHY_0115 CHY_0115 "putative aspartate aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 142/338 (42%), Positives = 203/338 (60%)
Query: 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVII 65
+QG L++R + ++++ L G++Y P Q +LV+ G + + A+ A+ SPGDEV+I
Sbjct: 66 NQGLLELR---EEISRYLLRL--TGVAYDPVQEVLVTVGVSEGVDLALRALVSPGDEVLI 120
Query: 66 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 125
P P +VSY +A PV + TR F L P++LE +T KS++L+LC P+NPTG+V
Sbjct: 121 PEPSYVSYGPTTMLAGGKPVYIRTRPENGFKLTPELLEEAITPKSKILLLCYPNNPTGAV 180
Query: 126 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 185
+ L ++ ++A+H LLV+SDEIY + Y H S AS PGM ERT+ +NGFSKAF
Sbjct: 181 MTADDLAKLLPVIAEHD-LLVISDEIYAELTYE-GKHVSVASFPGMKERTVILNGFSKAF 238
Query: 186 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAF 245
AMTGWRLGY AGPK +AA KI Q+T + I+ + + V KMV+ +
Sbjct: 239 AMTGWRLGYAAGPKEIIAAMTKIH-QYTMLCAPITAQKAAIEALKNQN--DAVKKMVEEY 295
Query: 246 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 305
RR LV++F E+ G+ + EP+GAFY F D S A G +SE LL +
Sbjct: 296 NYRRRILVEAFSEM-GLWLFEPKGAFYAFPDIS------ATGL----SSEEFAERLLFEE 344
Query: 306 QVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 341
+VA+VPG AFG + IRISYA + L A++RIK+
Sbjct: 345 KVAVVPGSAFGPSGEGFIRISYATARKDLIEALKRIKR 382
|
|
| TIGR_CMR|CHY_1491 CHY_1491 "aspartate aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 123/320 (38%), Positives = 190/320 (59%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ G++Y +++V+ GAK + + +PGDEVIIP P+WVSY E ++A P+++
Sbjct: 81 QRTGVNYEDQEVVVTCGAKHGLYNIFQVILNPGDEVIIPVPYWVSYVEQVKLAGGVPILV 140
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PT ENF L P L + L +++ +I+ SPSNPTG VY + L + R++ K +L++
Sbjct: 141 PT--GENFKLAPDKLINYLNNRTKAIIINSPSNPTGVVYSFDELKSLGRLL-KDREILII 197
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
+DEIYE I ++ + A+ P + E+T VNGFSK+ +MTGWRLGY+A + + A +
Sbjct: 198 ADEIYERIYFSEKPISFVAANPELKEKTFIVNGFSKSHSMTGWRLGYVAASRQYAAKLIE 257
Query: 208 IQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
+QS TS +S +Q + V KMV+ F++RRDF+V EL+ +K+ EP
Sbjct: 258 LQSHQTSNPTSFAQ---WGALAALTIEDDSVEKMVQEFKKRRDFVVSRLQELK-LKVIEP 313
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSE-SLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
GAFY+F +G + G KI N+ +L+ VA+VPG AFGDD +R+SYA
Sbjct: 314 AGAFYVFPRIDNCFGKKHSG--KIINTSIDFAEIMLEYYLVAMVPGIAFGDDRFVRLSYA 371
Query: 327 ASLTTLQAAVERIKKGLLTL 346
SL L+ ++R++ L L
Sbjct: 372 LSLADLKEGLKRLETFLKNL 391
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|
| UNIPROTKB|Q2GK59 aspC "Aspartate aminotransferase" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 126/314 (40%), Positives = 182/314 (57%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
++ G+ Y +Q+LV GAKQ I +A + GDEVIIPAP+WVSYP+M +IA PVI+
Sbjct: 81 RDYGIDYVANQVLVGAGAKQCIYNLFMATINEGDEVIIPAPYWVSYPDMVKIAGGAPVIV 140
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
+ L P++L +T K++ LI+ SPSNPTG+VY + L IA ++ +H +LV+
Sbjct: 141 --NCGDYLKLTPELLRGAITPKTKWLIINSPSNPTGAVYSREELAAIAEVLKQHKHVLVI 198
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+D+IY ++Y A + P +++R VNG SKA++MTGWR+GYI G + A +
Sbjct: 199 TDDIYAKLVY-DAEFCGILQVEPSLYDRVYIVNGVSKAYSMTGWRIGYILGNAEAIKAVS 257
Query: 207 KIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
IQSQ T+ A+SI+Q + +KAF RRD ++ + GV ++
Sbjct: 258 TIQSQSTTNANSIAQYAAIAALDGDQSFLDT---RIKAFARRRDRVMDAVLS-SGVLQAD 313
Query: 267 -PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 325
PQGAFY+FI G A G I + + ++LL+ +VA+VPG AFG RISY
Sbjct: 314 VPQGAFYVFISCGNAIGKHAPKVGVINDGSDMAKHLLNH-RVAVVPGVAFGAPNFFRISY 372
Query: 326 AASLTTLQAAVERI 339
A S L A ERI
Sbjct: 373 ALSDDRLSEACERI 386
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5F4K8 | PAT_PINPS | 2, ., 6, ., 1, ., 1 | 0.7904 | 0.8920 | 0.6382 | N/A | no |
| E9L7A5 | PAT_PETHY | 2, ., 6, ., 1, ., 7, 9 | 0.8430 | 0.9630 | 0.7077 | N/A | no |
| Q9SIE1 | PAT_ARATH | 2, ., 6, ., 1, ., 7, 9 | 0.8246 | 0.9232 | 0.6842 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_V000190 | hypothetical protein (410 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 352 | |||
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 1e-148 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 1e-120 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 1e-104 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 1e-92 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 7e-88 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 3e-75 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 9e-71 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 6e-70 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 7e-69 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 1e-64 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 6e-63 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 2e-61 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 6e-61 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 1e-59 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 6e-53 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 5e-49 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 5e-48 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 8e-48 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 9e-48 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 2e-47 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 9e-45 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 2e-43 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 1e-40 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 1e-40 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 2e-38 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 2e-38 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 1e-37 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 4e-37 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 1e-36 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 8e-36 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 1e-35 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 2e-33 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 2e-33 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 4e-33 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 1e-32 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 4e-32 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 4e-32 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 1e-30 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 5e-30 | |
| PRK03321 | 352 | PRK03321, PRK03321, putative aminotransferase; Pro | 2e-29 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 5e-27 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 4e-26 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 6e-26 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 1e-24 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 1e-24 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 5e-24 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 6e-23 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 2e-22 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 8e-22 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 2e-20 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 4e-20 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 5e-20 | |
| PRK04781 | 364 | PRK04781, PRK04781, histidinol-phosphate aminotran | 2e-19 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 4e-19 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 1e-18 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 3e-18 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 4e-18 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 1e-17 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 2e-17 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 2e-17 | |
| PRK07590 | 409 | PRK07590, PRK07590, L,L-diaminopimelate aminotrans | 9e-16 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 1e-15 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 7e-15 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 9e-15 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 1e-14 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 6e-14 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 2e-13 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 2e-13 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 3e-13 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 3e-13 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 3e-13 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 5e-13 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 1e-12 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 1e-12 | |
| PRK03317 | 368 | PRK03317, PRK03317, histidinol-phosphate aminotran | 3e-12 | |
| PRK04870 | 356 | PRK04870, PRK04870, histidinol-phosphate aminotran | 4e-12 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 5e-12 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 5e-12 | |
| PRK04635 | 354 | PRK04635, PRK04635, histidinol-phosphate aminotran | 2e-11 | |
| PRK08153 | 369 | PRK08153, PRK08153, histidinol-phosphate aminotran | 3e-10 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 3e-10 | |
| PRK02610 | 374 | PRK02610, PRK02610, histidinol-phosphate aminotran | 5e-10 | |
| PRK09105 | 370 | PRK09105, PRK09105, putative aminotransferase; Pro | 6e-10 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 1e-09 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 5e-09 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 1e-08 | |
| PRK14808 | 335 | PRK14808, PRK14808, histidinol-phosphate aminotran | 2e-08 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 3e-07 | |
| PRK05387 | 353 | PRK05387, PRK05387, histidinol-phosphate aminotran | 4e-07 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 1e-06 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 1e-06 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 2e-06 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 7e-06 | |
| cd00616 | 352 | cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid s | 1e-05 | |
| PRK07392 | 360 | PRK07392, PRK07392, threonine-phosphate decarboxyl | 2e-05 | |
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 2e-05 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 6e-05 | |
| PRK07908 | 349 | PRK07908, PRK07908, hypothetical protein; Provisio | 1e-04 | |
| pfam01041 | 362 | pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS a | 2e-04 | |
| PRK06425 | 332 | PRK06425, PRK06425, histidinol-phosphate aminotran | 2e-04 | |
| PRK15481 | 431 | PRK15481, PRK15481, transcriptional regulatory pro | 3e-04 | |
| COG0399 | 374 | COG0399, WecE, Predicted pyridoxal phosphate-depen | 3e-04 | |
| PRK08637 | 388 | PRK08637, PRK08637, hypothetical protein; Provisio | 4e-04 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 4e-04 | |
| cd00615 | 294 | cd00615, Orn_deC_like, Ornithine decarboxylase fam | 5e-04 | |
| COG1982 | 557 | COG1982, LdcC, Arginine/lysine/ornithine decarboxy | 0.001 | |
| PRK11658 | 379 | PRK11658, PRK11658, UDP-4-amino-4-deoxy-L-arabinos | 0.001 | |
| pfam01276 | 417 | pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, ma | 0.002 | |
| PLN02672 | 1082 | PLN02672, PLN02672, methionine S-methyltransferase | 0.002 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 424 bits (1092), Expect = e-148
Identities = 155/322 (48%), Positives = 212/322 (65%), Gaps = 13/322 (4%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
++NGL Y P Q++V+ GAKQ++ A +A+ PGDEVIIPAP+WVSYPEM ++A PV +
Sbjct: 83 RDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFV 142
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PT F L + LE+ +T K++ LIL SPSNPTG+VY L+ IA + +H + VL
Sbjct: 143 PTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHD-IWVL 201
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
SDEIYE ++Y A TS ASL P + +RT+TVNGFSKA+AMTGWRLGY AGPK + A +
Sbjct: 202 SDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMS 261
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFRERRDFLVKSFGELEGVKMS 265
K+QS TS +SI+Q A VAAL G + V +M +AF ERRD +V E+ G++
Sbjct: 262 KLQSHSTSNPTSIAQYAAVAAL----NGPQDEVEEMRQAFEERRDLMVDGLNEIPGLECP 317
Query: 266 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 325
+P+GAFY+F + S G I +S LL++A VA+VPG AFG +R+SY
Sbjct: 318 KPEGAFYVFPNVSKLLG------KSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSY 371
Query: 326 AASLTTLQAAVERIKKGLLTLR 347
A SL L+ +ERI++ L +L+
Sbjct: 372 ATSLEDLEEGLERIERFLESLK 393
|
Length = 393 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 352 bits (905), Expect = e-120
Identities = 129/327 (39%), Positives = 198/327 (60%), Gaps = 20/327 (6%)
Query: 28 KENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
+ GL P++ I+V+ GAK+++ A LA+ +PGDEV+IP P + SY ++A PV
Sbjct: 80 RRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVP 139
Query: 87 LPTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 145
+P EN F D + LE+ +T K++ +IL SP+NPTG+VY K L I + +H ++
Sbjct: 140 VPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREH-DII 198
Query: 146 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAA 204
++SDEIYE ++Y A H S L G +RT+T+N FSK + MTGWR+G++ GP + +AA
Sbjct: 199 IISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAA 258
Query: 205 CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 264
K++S TS A + +Q A +AAL G EVV +M + +RERRD LV++ E+ G+ +
Sbjct: 259 LRKLKSYLTSCAPTPAQYAAIAALN-GPQSDEVVEEMREEYRERRDLLVEALNEIGGLSV 317
Query: 265 S-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTC 320
P+GAFYLF ++ +SE + LL++A VA+VPG FG+ +
Sbjct: 318 VKPPEGAFYLFPKIP-----------ELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGY 366
Query: 321 IRISYAASLTTLQAAVERIKKGLLTLR 347
+R+S A S TL+ A+ R+ + L R
Sbjct: 367 VRLSLATSEETLEEALRRLARFLAEYR 393
|
Length = 393 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 312 bits (802), Expect = e-104
Identities = 138/322 (42%), Positives = 196/322 (60%), Gaps = 6/322 (1%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ NGL Y ++I V GAKQ+I A++A GDEVIIPAP+WVSYP+M D TPVI+
Sbjct: 85 RRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIV 144
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
+ F L P+ LE+ +T ++R LIL +PSNPTG+VY + L +A ++ +HP +LVL
Sbjct: 145 ACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVL 204
Query: 148 SDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 205
+D+IY+HI + P H A+ P + +R L NG SK +AMTGWR+GY AGP +AA
Sbjct: 205 TDDIYDHIRFDDEPTPHL-LAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAI 263
Query: 206 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 265
NK+QSQ +S SSISQ A AAL V++ V +++RRD+ + + G+
Sbjct: 264 NKLQSQSSSCPSSISQAAAAAALN---GDQSFVTESVAVYKQRRDYALALLNAIPGLSCL 320
Query: 266 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 325
P GAFYL+++ + G +E + + YLLD A VA+V G A+G R+S
Sbjct: 321 VPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSI 380
Query: 326 AASLTTLQAAVERIKKGLLTLR 347
A SL TL+ A RI++ + LR
Sbjct: 381 ATSLETLEEACARIERAVAALR 402
|
Length = 402 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 280 bits (718), Expect = 1e-92
Identities = 104/317 (32%), Positives = 175/317 (55%), Gaps = 20/317 (6%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ G+ P++I+V+NGA++++ + A+ +PGDEV++P P + Y AR+A A V +
Sbjct: 51 RRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPV 110
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
P FLLD ++LE+ T K++LL L +P+NPTG+V + L+E+A + KH +L++
Sbjct: 111 PLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKH-GILII 169
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACN 206
SDE Y ++Y +L +ER + + FSK F + G R+GY+ P +
Sbjct: 170 SDEAYAELVYDGEPP-PALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLK 228
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
K+ TSG S++SQ A AAL G E + ++ + +R RRD L+++ EL + + +
Sbjct: 229 KLLPYTTSGPSTLSQAAAAAALD---DGEEHLEELRERYRRRRDALLEALKELGPLVVVK 285
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRIS 324
P G F+L++D + E LL +A V + PG AFG + +R+S
Sbjct: 286 PSGGFFLWLDLPEG------------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLS 333
Query: 325 YAASLTTLQAAVERIKK 341
+A L+ A+ER+ +
Sbjct: 334 FATPEEELEEALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 268 bits (688), Expect = 7e-88
Identities = 136/314 (43%), Positives = 196/314 (62%), Gaps = 19/314 (6%)
Query: 31 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89
+SY P+ +I+V+ GA Q++ A+ A+ +PGDEV+I P +VSY + +A PV + T
Sbjct: 75 AVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVAT 134
Query: 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
+ F + P +E+ +T K++ ++LCSP+NPTG+V K+ L+EIA IV KH L+VLSD
Sbjct: 135 TLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKH-DLIVLSD 193
Query: 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 209
EIY + Y A +TSFAS+ GM ERT+ ++GFSK FAMTGWRLG+IA P +F A KI
Sbjct: 194 EIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIH 252
Query: 210 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 269
A +++Q A + AL AG + V +M ++R+RR+F V SF E+ G+ P G
Sbjct: 253 QYSMMCAPTMAQFAALEAL---RAGNDDVIRMRDSYRKRRNFFVTSFNEI-GLTCHVPGG 308
Query: 270 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA 327
AFY F S+ G +SE LL + +VA+VPG FG+ + IR SYA
Sbjct: 309 AFYAFPSISS------TGL----SSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT 358
Query: 328 SLTTLQAAVERIKK 341
SL LQ A++R+K+
Sbjct: 359 SLEQLQEAMKRMKR 372
|
Length = 378 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 3e-75
Identities = 116/331 (35%), Positives = 181/331 (54%), Gaps = 22/331 (6%)
Query: 20 VQQFVINLKENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 78
FV + L Y+P+ +I+V+ GA ++I A + PG EVI+PAP + Y + R
Sbjct: 74 ACNFV--KDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIR 131
Query: 79 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 138
+ A PV + TR S F L + LE+ +TEK+R ++L PSNPTG K L +IA ++
Sbjct: 132 LCGAKPVFIDTR-STGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVL 190
Query: 139 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 198
K + VLSDEIY ++Y HTS A P M E+T+ +NG SK+ +MTGWR+G++ P
Sbjct: 191 -KDKNIFVLSDEIYSELVYE-QPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAP 248
Query: 199 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 258
+ K+ + ASSISQ A + AL G ++ M +++RRD++
Sbjct: 249 SYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKM---MRHQYKKRRDYVYNRLIS 305
Query: 259 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD- 317
+ G+ + +P GAFYLF F +S L+++A +A+VPG AF +
Sbjct: 306 M-GLDVEKPTGAFYLFPSIGH--------FT--MSSFDFALDLVEEAGLAVVPGSAFSEY 354
Query: 318 -DTCIRISYAASLTTLQAAVERIKKGLLTLR 347
+ +R+SYA S+ TL+ ++R++ L
Sbjct: 355 GEGYVRLSYAYSIETLKEGLDRLEAFLQQKA 385
|
Length = 387 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 9e-71
Identities = 104/316 (32%), Positives = 173/316 (54%), Gaps = 23/316 (7%)
Query: 31 GLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89
L Y P ++ILV+ GA +++ ++ A+ PGD+V++PAP + Y + + A V + T
Sbjct: 85 NLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDT 144
Query: 90 RISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
+F+L P++LE + E K + +IL P+NPTG Y + + +A ++ K+ + V
Sbjct: 145 T-ENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYD-IFV 202
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+SDE+Y + Y H S A + ++T+ +NG SK+ AMTGWR+G I P F A
Sbjct: 203 ISDEVYSELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLI 260
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
K + A++++Q A V AL G M K + +RRD++++ +L G K+ +
Sbjct: 261 KSHQYLVTAATTMAQFAAVEALTNGKDDALP---MKKEYIKRRDYIIEKMTDL-GFKIIK 316
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRIS 324
P GAFY+F Y ++S + K VA +PG AFG + +R+S
Sbjct: 317 PDGAFYIFAKIPAGYN---------QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLS 367
Query: 325 YAASLTTLQAAVERIK 340
YAAS+ T++ A++R+K
Sbjct: 368 YAASMETIKEAMKRLK 383
|
Length = 391 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 223 bits (569), Expect = 6e-70
Identities = 103/318 (32%), Positives = 170/318 (53%), Gaps = 17/318 (5%)
Query: 26 NLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85
K LS+ ++I+ + GA + A+ ++ PGDEVII P++ Y + + P+
Sbjct: 79 YSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPI 138
Query: 86 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 145
IL T + F ++ K LE+ +T K++ +IL SP+NPTG+V+ K L+EIA+I ++ L
Sbjct: 139 ILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEY-DLF 197
Query: 146 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 205
++SDE+Y+ + A+L GM ERT+T FSK FAMTGWR+GY+ P + +
Sbjct: 198 IISDEVYDGFSFY-EDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETA 256
Query: 206 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 265
I A +ISQ+A + AL +V + + F++R ++ K + + +
Sbjct: 257 KIINEGICFSAPTISQRAAIYALKH---RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLH 313
Query: 266 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRI 323
P+G+ Y FI+ G +S C LL +A V ++PG AFG+ + IR+
Sbjct: 314 PPKGSIYAFINIK------KTGL----SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRL 363
Query: 324 SYAASLTTLQAAVERIKK 341
+ + L+ A RI+K
Sbjct: 364 ACTVGIEVLEEAFNRIEK 381
|
Length = 384 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 7e-69
Identities = 106/324 (32%), Positives = 176/324 (54%), Gaps = 24/324 (7%)
Query: 29 ENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-RIADATPVI 86
+NG+ +Q I+V+ G+ + + A+LA+ PGDE+I+ P++ ++ EMA +A P++
Sbjct: 81 DNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNH-EMAITMAGCQPIL 139
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
+PT +N+ L P+ +E +T K+R ++ SP+NPTG VYP+ LL + +I A+H +
Sbjct: 140 VPT--DDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEH-GIYH 196
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+SDE YE+ Y H S S+PG T+++ SKA+ WR+GY+ P H + A
Sbjct: 197 ISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIK 256
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV-KMS 265
KIQ +SQ A + AL G + + + R L+KS G+L+ +
Sbjct: 257 KIQDTILICPPVVSQYAALGAL---QVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLH 313
Query: 266 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-DDTC-IRI 323
GAFY F+ +T + F L + L+ + +VA++PG FG + C +RI
Sbjct: 314 PANGAFYCFLKVNT----DLNDF-------ELVKQLIREYRVAVIPGTTFGMKNGCYLRI 362
Query: 324 SYAA-SLTTLQAAVERIKKGLLTL 346
+Y A T + +ER+ +GL T+
Sbjct: 363 AYGALQKATAKEGIERLVQGLKTI 386
|
Length = 389 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 1e-64
Identities = 114/318 (35%), Positives = 174/318 (54%), Gaps = 22/318 (6%)
Query: 31 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 90
G+ D ++V+ GA ++ A ++ GDEVIIP P +V Y E A+IA+A P+ +P R
Sbjct: 88 GVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLR 147
Query: 91 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150
F DP L +T+++R++++ P+NPTG+ K + IA I A+ + +LSDE
Sbjct: 148 EENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADI-AEDYNIYILSDE 206
Query: 151 IYEHIIYAPATH---TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
YEH +Y A H +A + T+ N FSK FAMTGWRLG++ P+ + K
Sbjct: 207 PYEHFLYEGAKHYPMIKYAP-----DNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIK 261
Query: 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
+ + +S Q AG+ AL + V +M K + ERR ++K E+ +K+ EP
Sbjct: 262 LHAYIIGNVASFVQIAGIEAL-RSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEP 320
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISY 325
+GAFY+F + +SE +LL+KA+V ++PG AFG + IRISY
Sbjct: 321 KGAFYVFANID----------ETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISY 370
Query: 326 AASLTTLQAAVERIKKGL 343
A S L A+ER++K L
Sbjct: 371 ATSKEKLIEAMERMEKAL 388
|
Length = 391 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 6e-63
Identities = 90/319 (28%), Positives = 147/319 (46%), Gaps = 26/319 (8%)
Query: 29 ENGLSYTP-DQILVSNGAKQSILQAV-LAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
L ++ +GA +I + L +PGD +++PAP + SY + R+A V
Sbjct: 57 SPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVR 116
Query: 87 LPTRISENFLLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 143
P S +F LD LE+ L TE +++++ SP NPTG+V L+++ + +H
Sbjct: 117 YPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEH-N 175
Query: 144 LLVLSDEIYEHIIYAPATHTSFASL--PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 201
+L+L DE Y ++ + +L G L V FSKAF + GWR+GYI G
Sbjct: 176 ILLLVDEAYAGFVFGSLDAVATRALLAEGPN--LLVVGSFSKAFGLAGWRVGYILGNAAV 233
Query: 202 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 261
++ K+ F S S+ Q A AAL + +M + +ERRD+L G
Sbjct: 234 ISQLRKLARPFYS--STHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA-G 290
Query: 262 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321
+ + Q F+L E + +L + LL++ V + PG +FG +
Sbjct: 291 LSVLPSQAGFFLLTGLDP------------EAALALAQVLLEEVGVYVTPGSSFGGPGWL 338
Query: 322 RISYAA-SLTTLQAAVERI 339
RI+ A + L+ +E I
Sbjct: 339 RITVAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 2e-61
Identities = 103/351 (29%), Positives = 181/351 (51%), Gaps = 39/351 (11%)
Query: 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 66
SQG ++R + F K+ G+ PD+IL++NG ++IL A++A+C PGDE+++P
Sbjct: 65 SQGIPELR------EAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVP 118
Query: 67 APFWVSYPEMARIADATPVILPTRISENFLLDPK-VLESKLTEKSRLLILCSPSNPTGSV 125
PF+ +Y A A V + T+I E F L K +E +T K++ +++ +P NPTG V
Sbjct: 119 EPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVV 178
Query: 126 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 185
Y K L+ +A I KH L ++SDE+Y +Y +TS SL G+ +R + ++ SK +
Sbjct: 179 YTKEELEMLAEIAKKH-DLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRY 237
Query: 186 AMTGWRLGYIAGP-KHFVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243
+ G R+G + K +AA K+ Q++ + ++ Q A L ++ +
Sbjct: 238 SACGARIGCLISKNKELIAAAMKLCQARLS--PPTLEQIGAAALLDT---PESYFDEVRE 292
Query: 244 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL- 302
+++RRD L + ++ GV +P+GAFY+ ++++E ++LL
Sbjct: 293 EYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLP------------VDDAEDFAKWLLT 340
Query: 303 ----DKAQVALVPGDAF------GDDTCIRISYAASLTTLQAAVERIKKGL 343
+ V + P F G + IRI+Y + L+ A+E +K+ L
Sbjct: 341 DFNYNGETVMVAPASGFYATPGLGKNE-IRIAYVLNEEDLKRAMEILKEAL 390
|
Length = 397 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 6e-61
Identities = 102/318 (32%), Positives = 161/318 (50%), Gaps = 21/318 (6%)
Query: 31 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89
GL Y PD ++LV+ GA ++I AVL + PGDEV++ P++ SY + +A A V +P
Sbjct: 79 GLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPL 138
Query: 90 RISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 148
F LD L + +T ++R LI+ SP NPTG+V L IA + +H LLV++
Sbjct: 139 VPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHD-LLVIT 197
Query: 149 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 208
DE+YEH+++ A H A+LPGM ERT+T++ +K F +TGW++G+ GP +AA
Sbjct: 198 DEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRAA 257
Query: 209 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 268
+ T + Q A AL A V+ + + + +RD L E G ++ +
Sbjct: 258 KQYLTYVGGAPFQPAVAHALDHEDA---WVAALRDSLQAKRDRLAAGLAEA-GFEVHDSA 313
Query: 269 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT-----CIRI 323
G ++L D + F CR L ++ VA +P F D +R
Sbjct: 314 GTYFLCADPRPLGYDDGTEF---------CRALPERVGVAAIPMSVFYDPADAWNHLVRF 364
Query: 324 SYAASLTTLQAAVERIKK 341
++ TL A+ R++
Sbjct: 365 AFCKRDDTLDEAIRRLRA 382
|
Length = 387 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 1e-59
Identities = 103/318 (32%), Positives = 161/318 (50%), Gaps = 19/318 (5%)
Query: 31 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 90
G++ P++I V++ Q+++ A A+ PGDEV+ P W + +I A V +P
Sbjct: 79 GVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLD 138
Query: 91 ISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
+ LD L + +T ++R L + SP+NPTG ++ L I +H L +++D
Sbjct: 139 FGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRH-GLWIVAD 197
Query: 150 EIYEHIIYAP-ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 208
E+YE + YAP SF + +R + VN FSK +AMTGWRLG++ P K+
Sbjct: 198 EVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKL 257
Query: 209 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 268
TS + Q+A VAAL G + V+++V R RD LV + L GV++++P
Sbjct: 258 IEYNTSCVAQFVQRAAVAALD---EGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPD 314
Query: 269 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYA 326
GA Y F G +S +L + L+D+A + L PG AFG +R +A
Sbjct: 315 GAMYAFF--------RIPGV---TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFA 363
Query: 327 ASLTTLQAAVERIKKGLL 344
L AVER+++ L
Sbjct: 364 RDPARLDEAVERLRRFLA 381
|
Length = 382 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 6e-53
Identities = 94/320 (29%), Positives = 151/320 (47%), Gaps = 22/320 (6%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ G+ P++ILV+ G ++L A + PG ++ P + R+ + ++
Sbjct: 84 QRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLV 143
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV-AKHPRLLV 146
P + L P ++E + ++ SP+NPTG++ ++ L +++ + A+ L+V
Sbjct: 144 PVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVV 203
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
DEIY + Y AS+ + + +N FSK F MTGWRLG++ P V
Sbjct: 204 --DEIYHGLTYG----VDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELE 257
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
K+ AS+ +Q A +A ++ F RRDFL+ + EL E
Sbjct: 258 KLAQNLYISASTPAQHAALACFEP--ETLAILEARRAEFARRRDFLLPALRELGFGIAVE 315
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRI 323
PQGAFYL+ D S + G ++ + CR+ L+ VA PG FG +R
Sbjct: 316 PQGAFYLYADISAFGG----------DAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRF 365
Query: 324 SYAASLTTLQAAVERIKKGL 343
+Y SL LQ AVERI +GL
Sbjct: 366 AYTQSLPRLQEAVERIARGL 385
|
Length = 387 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 5e-49
Identities = 96/341 (28%), Positives = 166/341 (48%), Gaps = 25/341 (7%)
Query: 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 66
S+G ++R ++ ++NG+ TPD + V+ +++ A+ PGDE++IP
Sbjct: 69 SEGLPELREAIVKREK-----RKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIP 123
Query: 67 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 126
P + Y + + PV T E + D + K+TEK++ + + +P+NPTG++Y
Sbjct: 124 GPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALY 183
Query: 127 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 186
K L EI I +H L V+SDEIY+ + Y H S SL + +NG SK +
Sbjct: 184 EKKTLKEILDIAGEH-DLPVISDEIYDLMTYE-GKHVSPGSLTKD-VPVIVMNGLSKVYF 240
Query: 187 MTGWRLGYIA--GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244
TGWRLGYI P+ +A + + + A AA+ + + + +K
Sbjct: 241 ATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKK 300
Query: 245 FRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLL 302
+ERRD++ K E+ G+ ++PQGAFY+F I+ G ++ + +L
Sbjct: 301 LKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIE-----------EGPWKDDKEFVLDVL 349
Query: 303 DKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 341
+A V V G FG+ R+ + + L+ A++R ++
Sbjct: 350 HEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEE 390
|
Length = 398 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 5e-48
Identities = 94/334 (28%), Positives = 152/334 (45%), Gaps = 54/334 (16%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ G T D I+++ GA ++ A+ A+ +PGDEVI+ AP++V Y V++
Sbjct: 88 RRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVV 147
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------H 141
PT ++ F D LE+ +T K++ +I+ SP+NPTG VY + L +A ++ +
Sbjct: 148 PTD-TDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGR 206
Query: 142 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA----- 196
P + ++SDE Y I+Y A + ++ ++ V FSK+ ++ G R+GYIA
Sbjct: 207 P-IYLISDEPYREIVYDGAE---VPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEM 262
Query: 197 -GPKHFVAACNKIQSQFTSG------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 249
VAA F + A ++ Q+ L V V ++ R
Sbjct: 263 EDADDLVAALV-----FANRILGFVNAPALMQRVVAKCL------DATVD--VSIYKRNR 309
Query: 250 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK--IENSESLCRYLLDKAQV 307
D L EL G + +PQGAFYLF K E+ + C K +
Sbjct: 310 DLLYDGLTEL-GFECVKPQGAFYLFP--------------KSPEEDDVAFCE-KAKKHNL 353
Query: 308 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 341
LVPG FG R+SY T++ ++ +K
Sbjct: 354 LLVPGSGFGCPGYFRLSYCVDTETIERSLPAFEK 387
|
Length = 394 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 8e-48
Identities = 98/323 (30%), Positives = 172/323 (53%), Gaps = 22/323 (6%)
Query: 27 LKENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85
K+ GL P+ ++ V++G ++I +L + +PGDEVI+ APF+ SY +A A
Sbjct: 105 KKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIK 164
Query: 86 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 145
+ R +F + L++ T K+R +++ +P NPTG ++ + L+ IA + ++ +L
Sbjct: 165 TVTLR-PPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKEN-DVL 222
Query: 146 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 205
+DE+Y+ + + H S ASLPGM+ERT+T+N K F++TGW++G+ P H
Sbjct: 223 AFTDEVYDKLAFE-GDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV 281
Query: 206 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 265
+ S T ++ Q A VAAL A ++ + + ++D LV+ E+ G K+
Sbjct: 282 RQAHSFLTFATATPMQWAAVAAL---RAPESYYEELKRDYSAKKDILVEGLKEV-GFKVY 337
Query: 266 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD-----TC 320
G +++ +D + + GF EN + C YL+++ VA +P F +
Sbjct: 338 PSSGTYFVMVDHTPF------GF---ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNL 388
Query: 321 IRISYAASLTTLQAAVERIKKGL 343
+R ++ TL+AAVER+K L
Sbjct: 389 VRFAFCKDEETLRAAVERMKTKL 411
|
Length = 413 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 9e-48
Identities = 111/326 (34%), Positives = 168/326 (51%), Gaps = 40/326 (12%)
Query: 31 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARIADATPVIL 87
GL P++I+V+ GA ++L A LA+ GDEV++P P SYP A+ PV++
Sbjct: 85 GLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDP---SYPCNRHFVAAAEGRPVLV 141
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG-SVYPKNLLDEIARIVA--KHPRL 144
P+ +E F L +E+ E++R ++L SPSNPTG S+ P DE+ RIV +
Sbjct: 142 PSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAP----DELRRIVEAVRARGG 197
Query: 145 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 204
+ DEIY+ + Y A ++ + + + +T+N FSK F MTGWRLG++ P+ V
Sbjct: 198 FTIVDEIYQGLSYDAAPVSALS----LGDDVITINSFSKYFNMTGWRLGWLVVPEALVGT 253
Query: 205 CNKIQSQFTSGASSISQKAGVA-----ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 259
K+ AS+++Q A +A L + + F+ RRDF+V + L
Sbjct: 254 FEKLAQNLFICASALAQHAALACFEPDTL-------AIYERRRAEFKRRRDFIVPALESL 306
Query: 260 EGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 318
G K+ P GAFY++ D A S +L + +L A V LVPG FG
Sbjct: 307 -GFKVPVMPDGAFYVYADCRGVAHPAAGD------SAALTQAMLHDAGVVLVPGRDFGPH 359
Query: 319 TC---IRISYAASLTTLQAAVERIKK 341
IR+SYA S++ L+ AV R+ K
Sbjct: 360 APRDYIRLSYATSMSRLEEAVARLGK 385
|
Length = 388 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 2e-47
Identities = 85/300 (28%), Positives = 143/300 (47%), Gaps = 18/300 (6%)
Query: 44 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 103
G+K+ I LA +PGD V++P P + Y A P +P + FL D +
Sbjct: 99 GSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIP 158
Query: 104 SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163
+ +K++L+ + P+NPTG+V P E+ ++ ++V D Y I +
Sbjct: 159 EDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEY-NIIVCHDNAYSEITFDGYKAP 217
Query: 164 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKA 223
SF + G + + + SK + MTGWR+G G +A K+++ SG Q A
Sbjct: 218 SFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYA 277
Query: 224 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS 283
+AAL +VV ++ K ++ RRD L+++ ++ G+ + +P+ FY+++
Sbjct: 278 AIAALNG---PQDVVKEIRKIYQRRRDLLLEALKKI-GIDVEKPKATFYVWV-------P 326
Query: 284 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 341
EG+ S LL++ V + PG FG+ + IRIS L+ AV RIKK
Sbjct: 327 VPEGY----TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 9e-45
Identities = 86/314 (27%), Positives = 157/314 (50%), Gaps = 19/314 (6%)
Query: 31 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89
GL P+ +++V++GA +++ A+LA+ PGDEV++ P + +Y + R A P ++
Sbjct: 81 GLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRL 140
Query: 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
++ L L + + +++ ++L +P NP G V+P+ L +A +H + + D
Sbjct: 141 E-PPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRH-DAVAICD 198
Query: 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 209
E++EH+++ H +LPGM ERT+ + K F++TGW++G++ + K
Sbjct: 199 EVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAH 258
Query: 210 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 269
QF + + + +A V A GLG M RD L + G + QG
Sbjct: 259 -QFLTFTTPPNLQAAV-AYGLGKPDD-YFEGMRADLARSRDRLAAGLRRI-GFPVLPSQG 314
Query: 270 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD----TCIRISY 325
++L +D + G E+ + CR L+++A VA +P AF ++ + +R +
Sbjct: 315 TYFLTVDLA--------PLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCF 366
Query: 326 AASLTTLQAAVERI 339
A TL AVER+
Sbjct: 367 AKRDATLDEAVERL 380
|
Length = 387 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 2e-43
Identities = 95/314 (30%), Positives = 155/314 (49%), Gaps = 19/314 (6%)
Query: 31 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89
G+ P+ +++ G+K+ I LA +PGD V++P P + Y A P +P
Sbjct: 87 GVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPL 146
Query: 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
+ FL D + + +K++L+ + P+NPTG+V +E+ K+ ++V D
Sbjct: 147 KEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKY-DIIVCHD 205
Query: 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 209
Y I Y SF +PG + + + SK + MTGWR+G+ G +A K++
Sbjct: 206 AAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVK 265
Query: 210 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 269
S SG Q+AG+AAL EVV ++ K ++ERRD LV+ +L G+++ P+
Sbjct: 266 SNVDSGVFQAIQEAGIAALNG---PQEVVEELRKIYQERRDILVEGLRKL-GLEVEPPKA 321
Query: 270 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA 327
FY++ +G+ S LLDKA V + PG+ FG+ + RI+
Sbjct: 322 TFYVWAPVP-------KGY----TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV 370
Query: 328 SLTTLQAAVERIKK 341
++ AVERIKK
Sbjct: 371 PDERIEEAVERIKK 384
|
Length = 385 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 1e-40
Identities = 101/335 (30%), Positives = 160/335 (47%), Gaps = 47/335 (14%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARIADATPVILPTRI 91
D I + NG + I+ A+ A+ + GDEV++PAP YP ++ PV
Sbjct: 94 DVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAP---DYPLWTAAVSLSGGKPVHYLCDE 150
Query: 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151
+ D + SK+T +++ +++ +P+NPTG+VY K LL+EI I +H L++ +DEI
Sbjct: 151 EAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQH-NLIIFADEI 209
Query: 152 YEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKH----FVAA 204
Y+ I+Y A H S ASL P + +T NG SKA+ + G+R+G+ ++GPK ++
Sbjct: 210 YDKILYDGAVHISIASLAPDLL--CVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEG 267
Query: 205 CNKIQSQFTSGASSISQKAGVAALGLGYA--------GGEVVSKMVKAFRERRDFLVKSF 256
+ + + A+ +Q A ALG GY GG E+RD +
Sbjct: 268 LD-MLASMRLCANVPAQHAIQTALG-GYQSINELILPGGR--------LYEQRDRAWELL 317
Query: 257 GELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314
+ GV +P+GA Y F +D Y I + E LL + +V LV G
Sbjct: 318 NAIPGVSCVKPKGALYAFPKLDPKVY---------PIHDDEQFVLDLLLQEKVLLVQGTG 368
Query: 315 FG--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 347
F + RI + L+ A+ RI + L R
Sbjct: 369 FNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSGYR 403
|
Length = 404 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-40
Identities = 89/327 (27%), Positives = 152/327 (46%), Gaps = 36/327 (11%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-------PVILP 88
P+ I+ G I A+ A+ PGD V+I P YP P++
Sbjct: 83 PEWIVFVPGVVPGISLAIRALTKPGDGVVIQTP---VYPPFYNAIKLNGRKVIENPLVED 139
Query: 89 TRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
+ +D LE E+ +L ILC+P NPTG V+ K L +IA + +H + V+
Sbjct: 140 ---DGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRH-GVRVI 195
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAA 204
SDEI+ ++ H FASL + ++T+ SK F + G + Y I+ +
Sbjct: 196 SDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKF 255
Query: 205 CNKIQSQFTSGASSISQKAGVAALGLGYA-GGEVVSKMVKAFRERRDFLVKSFGE-LEGV 262
+++ G S++ A AA Y G + ++++ ++ RD++ + L GV
Sbjct: 256 LKRLKRNGLHGPSALGIIATEAA----YNQGEPWLDELLEYLKDNRDYVADFLNKHLPGV 311
Query: 263 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTC 320
K++EPQG + ++D + L +LL++A+VAL PG FG+
Sbjct: 312 KVTEPQGTYLAWLDCREL----------GLDDSELAEFLLEEAKVALSPGSTFGEEGSGF 361
Query: 321 IRISYAASLTTLQAAVERIKKGLLTLR 347
+R+++A L+ A+ER+K+ L R
Sbjct: 362 VRLNFACPRAILEEALERLKRALKKRR 388
|
Length = 388 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 2e-38
Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 29/290 (10%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
P+ +LV NG+ + I V A PGD V+IP P + Y A++A A V +P +
Sbjct: 74 DPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLK---E 130
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
F LD + + + +K++L+ LC+P+NPTG++ P+ L + + + L+V+ DE Y
Sbjct: 131 FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEG-GLVVI-DEAY-- 186
Query: 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 214
I ++P + P T FSKAF + G R+GY +AA NK++ F
Sbjct: 187 IEFSPESSLELLKYPPNLIVLRT---FSKAFGLAGLRVGYAIANPELIAALNKVRPPFN- 242
Query: 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 274
SS + A +AAL + + + V+ RE R+ L + L G+ P A ++
Sbjct: 243 -VSSPALAAAIAALRD----ADYLEESVERIREERERLYAALKAL-GLFGVFPSQANFVL 296
Query: 275 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324
+ + +L LL K + +RI+
Sbjct: 297 VRVPD------------AEAAALAEALLKKGILVRDCSSVGLLPGYLRIT 334
|
Length = 356 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 2e-38
Identities = 94/319 (29%), Positives = 161/319 (50%), Gaps = 31/319 (9%)
Query: 31 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89
G Y P ++ V A + + A+ A+ PGDEVI P + SY + R+ ATPV +
Sbjct: 84 GARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKL 143
Query: 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
E+F ++ + + +T ++R++I+ +P NP+ +V+ L +A++ ++ +++LSD
Sbjct: 144 SP-EDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLT-RNTDIVILSD 201
Query: 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 209
E+YEH+++ A H S A + ER++ V+ F K++ +TGWR+GY P + K+
Sbjct: 202 EVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVH 261
Query: 210 SQFTSGASSISQKAGVAALG--LGYAGGEVVSKMVKAFRER-RDFLVKSFGELEG--VKM 264
A + Q A AL Y G + AF +R RD L + EL G ++
Sbjct: 262 QFMVFSADTPMQHAFAEALAEPASYLG-------LGAFYQRKRDLLAR---ELAGSRFEL 311
Query: 265 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF---GDDT-C 320
+G+F++ F F +S+ + R + D A+VA +P AF G DT
Sbjct: 312 LPSEGSFFMLARFR--------HFSDESDSDFVLRLIRD-ARVATIPLSAFYTDGTDTGL 362
Query: 321 IRISYAASLTTLQAAVERI 339
IR+S++ TL R+
Sbjct: 363 IRLSFSKDDATLVEGARRL 381
|
Length = 384 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-37
Identities = 87/329 (26%), Positives = 152/329 (46%), Gaps = 46/329 (13%)
Query: 31 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89
G Y D +I V+ GA +++ A+LA+ PGDEVI+ P + SY +A V +
Sbjct: 85 GRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVAL 144
Query: 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
+ +F +D + + ++ ++RL+IL +P NP+G+V+ + + +++A + VLSD
Sbjct: 145 Q-PPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGT-DIYVLSD 202
Query: 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 209
E+YEHI++ A H S P + ER V+ F K + +TGW++GY P A K+
Sbjct: 203 EVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVH 262
Query: 210 SQFTSGASSISQKAGVAA---------LGLGYAGGEVVSKMVKAF-RERRDFLVKSFGEL 259
Q+ + + + +A L L AF + +RD + L
Sbjct: 263 -QYNTFTVNTPAQLALADYLRAEPEHYLELP------------AFYQAKRDRFRAA---L 306
Query: 260 EG--VKMSEPQGAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLDKAQVALVPGDAF- 315
K+ +G ++ +D+S + E C++L + VA +P F
Sbjct: 307 ANSRFKLLPCEGTYFQLVDYSAISDLDDVE----------FCQWLTREHGVAAIPLSVFY 356
Query: 316 ---GDDTCIRISYAASLTTLQAAVERIKK 341
+R+ +A TL AA ER+ +
Sbjct: 357 ADPFPHRLVRLCFAKQEETLDAAAERLCQ 385
|
Length = 386 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 4e-37
Identities = 86/316 (27%), Positives = 152/316 (48%), Gaps = 23/316 (7%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN- 94
P+ I+ G S+ AV A+ +PG+ VI+ P + + + V+ P ++
Sbjct: 83 PEWIVFLPGVVPSLFAAVRALTAPGEGVIVQTPVYPPFLSAVKSNGRELVLNPLKLDPGR 142
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
+ D + LE +TEK+RLL+LCSP NP G V+ + L +A + +H ++V+SDEI+
Sbjct: 143 YRFDLEDLEDAITEKARLLLLCSPHNPVGRVWTREELTRLAELCLRH-NVVVVSDEIHAD 201
Query: 155 IIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQ 211
++Y P H ASL P + ERT+T+ K F + G + + I P+ A Q
Sbjct: 202 LVYPPNKHIPLASLSPEIAERTVTLLSPGKTFNIAGLNISFAIIPNPELRRAFQEAAQRV 261
Query: 212 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKA-FRERRDFLVKSFGE-LEGVKMSEPQG 269
+ A AA Y GE + A R RD + + + L +++ P+
Sbjct: 262 HIQHGNLFGYVAFEAA----YREGEPWLDALLAYLRGNRDLVEEFIAKRLPQIRVRPPEA 317
Query: 270 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC--IRISYAA 327
+ ++D +A+ L + +++A + L PG +FGD +R+++
Sbjct: 318 TYLAWLDCRALGLDDAD----------LRAFFIEQAGLGLNPGISFGDGGSGFMRLNFGC 367
Query: 328 SLTTLQAAVERIKKGL 343
+TL+ A+ER+++ L
Sbjct: 368 PRSTLEQALERLRQAL 383
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 1e-36
Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 24/316 (7%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR---IADATPVILPTRI 91
T D +++++G Q+I + A+ +PG +++P P + Y A + +LP
Sbjct: 95 TADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLP--- 151
Query: 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151
+++ +D LES EK+ +++ +PSNP GSV+ ++ L +IA + K + +++DEI
Sbjct: 152 EKDWEIDLDGLESLADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKL-GIPIIADEI 210
Query: 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-------GPKHFVAA 204
Y H+++ A AS + L++ G SK + + GWRLG+I +
Sbjct: 211 YGHMVFGDAPFIPMASFASIVPV-LSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQG 269
Query: 205 CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 264
+ Q G ++I Q A L E + + + + ++ G+
Sbjct: 270 LKNL-LQRILGPATIVQGALPDI--LENTPQEFFDGKISVLKSNAELCYEELKDIPGLVC 326
Query: 265 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324
+P+GA YL + E E F +I++ C L + V +PG AFG +RI+
Sbjct: 327 PKPEGAMYLMV------KLELELFPEIKDDVDFCEKLAREESVICLPGSAFGLPNWVRIT 380
Query: 325 YAASLTTLQAAVERIK 340
+ L+ A RIK
Sbjct: 381 ITVPESMLEEACSRIK 396
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 8e-36
Identities = 89/309 (28%), Positives = 141/309 (45%), Gaps = 22/309 (7%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
+P+Q+ +++G Q+ A++ + GDEVI+P P++ ++ + PV LP
Sbjct: 89 SPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPG 148
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
L DP E+ +T ++R + L +P+NPTG VYP LL E+ + +H L+L DE Y
Sbjct: 149 LLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALIL-DETYRD 207
Query: 155 IIYAP-ATHTSFASLPGMWERTLT-VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 212
A H FA P W+ TL + FSK++A+TG R+G + +A K
Sbjct: 208 FDSGGGAPHDLFAD-PD-WDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDTV 265
Query: 213 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 272
A I Q A A GL + R RRD F L G ++ GA++
Sbjct: 266 AICAPRIGQIA--VAWGLPNLADWRAGNRAEIAR-RRDAFRAVFARLPGWEL-LASGAYF 321
Query: 273 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT--CIRISYA-ASL 329
++ F S + R L +A + +PG FG +R+++A A +
Sbjct: 322 AYV---------RHPFPDRP-SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADV 371
Query: 330 TTLQAAVER 338
+ VER
Sbjct: 372 AGIGELVER 380
|
Length = 386 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 1e-35
Identities = 73/313 (23%), Positives = 133/313 (42%), Gaps = 15/313 (4%)
Query: 33 SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS 92
D +++ +G +I + A+ + G +++P P + Y +A +
Sbjct: 92 PIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYRTLAESMGIEVKLYNLLPD 151
Query: 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152
+++ +D K LES + EK+ L++ +PSNP GSV+ + L+EI + + L +++DEIY
Sbjct: 152 KSWEIDLKQLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEILAVAERQ-CLPIIADEIY 210
Query: 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN-----K 207
++++ AT ASL L+ G +K + + GWRLG+I +
Sbjct: 211 GDMVFSGATFEPVASLSSNVPI-LSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLV 269
Query: 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
SQ G +I Q A + L E + + + G++ P
Sbjct: 270 KLSQRILGPCTIVQGALPSI--LLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLQPVMP 327
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 327
GA Y+ + G E E F + +N L+ + V +PG F R+
Sbjct: 328 SGAMYMMV------GIEMEHFPEFKNDVEFTERLIAEQSVFCLPGSCFEYPGFFRVVLTV 381
Query: 328 SLTTLQAAVERIK 340
+ ++ A RI+
Sbjct: 382 PVVMMEEACSRIQ 394
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-33
Identities = 88/318 (27%), Positives = 154/318 (48%), Gaps = 21/318 (6%)
Query: 28 KENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
+E G++ P+ ++ + G K +++ + +PGD +++P P + Y +A A
Sbjct: 85 REYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFET 144
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
+P NFL D + ++ EK++L+ L P+NPTG+V K +E KH + V
Sbjct: 145 MPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKH-NIGV 203
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+ D Y I + SF PG + + + SK F M GWR+ + G + + A N
Sbjct: 204 VHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAIN 263
Query: 207 KIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 265
+Q F S +I Q A + AL + V+++V + RR+ + + E+ G ++
Sbjct: 264 LLQDHLFVSLFGAI-QDAAIEAL---LSDQSCVAELVARYESRRNAFISACREI-GWEVD 318
Query: 266 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRI 323
P+G+F+ ++ +G+ SE LL+KA VA+ PG+ FG+ + +R+
Sbjct: 319 APKGSFFAWMPV-------PKGY----TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRV 367
Query: 324 SYAASLTTLQAAVERIKK 341
L+ AVERI K
Sbjct: 368 GLLTDEERLREAVERIGK 385
|
Length = 389 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-33
Identities = 84/317 (26%), Positives = 154/317 (48%), Gaps = 19/317 (5%)
Query: 31 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89
+ D ++L+ G++ ++ + +PGD +++P P + +Y ++A AT +P
Sbjct: 87 NVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPL 146
Query: 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
+ +FL D +++ ++ +K++++IL P NP ++ ++ E+ KH ++V+ D
Sbjct: 147 KKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKH-NIIVVHD 205
Query: 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 209
Y + SF S+PG E + +N SK++++ G R+GY+ G + V A + +
Sbjct: 206 FAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFK 265
Query: 210 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 269
S G QKA AAL G K ++ERRD LV F G + +P G
Sbjct: 266 SNTDYGVFLPIQKAACAAL---RNGAAFCEKNRGIYQERRDTLVDGFRTF-GWNVDKPAG 321
Query: 270 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA 327
+ +++ + +G+ S S L+D+A V + PG AFG + +RI+
Sbjct: 322 SMFVWAEIP-------KGW----TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ 370
Query: 328 SLTTLQAAVERIKKGLL 344
LQ AVE I+ +
Sbjct: 371 DEEVLQQAVENIRNSGI 387
|
Length = 399 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 4e-33
Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 28/290 (9%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
P+QIL+ NG+ + I + A PGD V++P P + Y A+I A V +P E+
Sbjct: 70 DPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLD--ED 127
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
LD + + + +K +L+ LCSP+NPTG++ ++ ++ + + LV+ DE Y
Sbjct: 128 GQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPE--DALVVVDEAY-- 183
Query: 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 214
++ S L + + + SKAF + G R+GY + A NK+++ F
Sbjct: 184 GEFSG--EPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAPF-- 239
Query: 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 274
S ++Q A +AAL + + K V+ R+ L +L G+++ F +
Sbjct: 240 NLSRLAQAAAIAAL----RDDDFIEKTVEEINAERERLYDGLKKLPGLEVYPSDANF-VL 294
Query: 275 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324
I F ++++L LL+K + G C+RI+
Sbjct: 295 IRFP-------------RDADALFEALLEKGIIVRDLNSYPGLPNCLRIT 331
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 1e-32
Identities = 82/345 (23%), Positives = 151/345 (43%), Gaps = 43/345 (12%)
Query: 16 LWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE 75
L + ++ L G+S P+QI++++GA+Q++ + + PGD V++ P +YP
Sbjct: 137 LREAIAAYL--LARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDP---TYPG 191
Query: 76 M---ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS--NPTGSVYP--- 127
A + +P + +DP+ LE L + + +P+ NPTG
Sbjct: 192 ALQALEALGARVIPVPV---DEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLER 248
Query: 128 -KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 186
K LL +A+ +L++ D+ Y + Y +L R + + FSK A
Sbjct: 249 RKALLA-----LAEKYDVLIIEDDYYGELRYDGPPPPPLKAL-DAPGRVIYLGSFSKTLA 302
Query: 187 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246
G RLGY+ P + +++ G SS+SQ A A L G+ + ++ + +
Sbjct: 303 -PGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYA 360
Query: 247 ERRDFLVKSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304
RRD L+++ E E + P+G +L+++ EG ++ L L+K
Sbjct: 361 RRRDALLEALAEYLPELATWTRPEGGLFLWLEL-------PEGI----DARELLAAALEK 409
Query: 305 AQVALVPGDAFGDDT----CIRISYA-ASLTTLQAAVERIKKGLL 344
V G AF D +R+S++ S ++ ++R+ L
Sbjct: 410 GVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLR 454
|
Length = 459 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 4e-32
Identities = 81/303 (26%), Positives = 146/303 (48%), Gaps = 24/303 (7%)
Query: 44 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR---IADATPVILPTRISENFLLDPK 100
G+K+ + LA +PGD V++P+P +YP R IA A + + ++L+D
Sbjct: 105 GSKEGLTHLALAYVNPGDVVLVPSP---AYPAHFRGPLIAGAQIYPIILKPENDWLIDLS 161
Query: 101 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160
+ ++ +++++L PSNPT + P+ +EI A+ ++++ D Y + +
Sbjct: 162 SIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAF-ARKYEIMLVHDLCYAELAFDGY 220
Query: 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSIS 220
TS +PG + + + SK + M GWR+G++ G +H + +++ G S
Sbjct: 221 QPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSAL 280
Query: 221 QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 280
QKA AL L + ++ + +R RRDFL++ GEL G + + YL++
Sbjct: 281 QKAAETALQL---PDSYLQQVQERYRTRRDFLIQGLGEL-GWNIPPTKATMYLWVPCPVG 336
Query: 281 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVER 338
G S +L K V + PG+AFG+ + +RIS A L A++R
Sbjct: 337 MG-----------STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDR 385
Query: 339 IKK 341
+K+
Sbjct: 386 LKQ 388
|
Length = 394 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 90/325 (27%), Positives = 156/325 (48%), Gaps = 47/325 (14%)
Query: 37 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 96
D I NG + I ++ A+ GDEV+IP+P + + +A T V +
Sbjct: 209 DDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWY 268
Query: 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 156
D + SK+T +++ +++ +P+NPTG++YP+ +L +I I +H +L++ SDEIY+ ++
Sbjct: 269 PDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREH-QLIIFSDEIYDRLV 327
Query: 157 YAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVA---------- 203
HTS ASL P ++ +T +G SK+ + G+R+G+ ++G K
Sbjct: 328 MDGLEHTSIASLAPDLF--CVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLA 385
Query: 204 ---ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR--ERRDFLVKSFGE 258
C+ + +Q SI Q ALG G+ V +V R E+R+ + +
Sbjct: 386 NMRLCSNVPAQ------SIVQ----TALG-GHQ--SVKDYLVPGGRVYEQRELVYNALNA 432
Query: 259 LEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316
+ G+ +P+ AFY+F ID + I + E LL +V +V G F
Sbjct: 433 IPGISAVKPKAAFYIFPKIDVKKF---------NIHDDEQFALDLLHDKKVLIVQGTGFN 483
Query: 317 DDTC--IRISYAASLTTLQAAVERI 339
D R+ Y L L+ A++R+
Sbjct: 484 WDKPDHFRVVYLPRLEDLEDAMDRL 508
|
Length = 517 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-30
Identities = 87/284 (30%), Positives = 135/284 (47%), Gaps = 21/284 (7%)
Query: 38 QILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA---DATPVILPTRIS 92
+++ S G+K ++ A+L C +PGD ++ P YP LP
Sbjct: 108 EVIHSIGSKPAL--AMLPSCFINPGDVTLMTVP---GYPVTGTHTKYYGGEVYNLPLLEE 162
Query: 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152
NFL D + + EK++LL L P+NPTG+V K +E+ AK ++V+ D Y
Sbjct: 163 NNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDF-AKENNIIVVQDAAY 221
Query: 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 212
+ + SF S+PG E + ++ SKA+ MTGWRL ++ G + V A ++
Sbjct: 222 AALTFD-GKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNN 280
Query: 213 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 272
SG QKAG+ AL E+ K+ + + R D LVK E+ G K P G FY
Sbjct: 281 DSGQFIAIQKAGIYAL----DHPEITEKIREKYSRRLDKLVKILNEV-GFKAEMPGGTFY 335
Query: 273 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316
L++ + K EN+E +YL+ + ++ VP D G
Sbjct: 336 LYVKAPK----GTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG 375
|
Length = 410 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 5e-30
Identities = 95/323 (29%), Positives = 152/323 (47%), Gaps = 30/323 (9%)
Query: 31 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA---RIADATPVI 86
G+ PD Q++ + G+K+ A+ +PGD ++ P P SYP A +A
Sbjct: 86 GVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNP---SYPIHAFGFIMAGGVIRS 142
Query: 87 LPTRISENFL--LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AKHP 142
+P E F L+ V S K LI+ PSNPT V LD +V AK
Sbjct: 143 VPAEPDEEFFPALERAVRHS--IPKPIALIVNYPSNPTAYVAD---LDFYKDVVAFAKKH 197
Query: 143 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 202
+++LSD Y I + S +PG + T+ SK F+M GWR+G+ G + +
Sbjct: 198 DIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLI 257
Query: 203 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 262
AA +++S GA + Q A AAL + +++M + +++RRD LV+SFG G
Sbjct: 258 AALTRVKSYLDYGAFTPIQVAATAALN---GPQDCIAEMRELYKKRRDVLVESFGR-AGW 313
Query: 263 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTC 320
+ P + + + + G +E S + L++KA VA+ PG FG+ D
Sbjct: 314 DIPPPAASMFAWAPIPEAF----RHLGSLEFS----KLLVEKADVAVAPGVGFGEHGDGY 365
Query: 321 IRISYAASLTTLQAAVERIKKGL 343
+RI+ + ++ A IK+ L
Sbjct: 366 VRIALVENEQRIRQAARNIKRFL 388
|
Length = 405 |
| >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 75/253 (29%), Positives = 115/253 (45%), Gaps = 38/253 (15%)
Query: 32 LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS---YPEMARIADATPVILP 88
L P+ + V G+ Q V A PGDEVI W S YP + ++A ATPV +P
Sbjct: 70 LGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFA---WRSFEAYPILVQVAGATPVQVP 126
Query: 89 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVL 147
LD + + +T+++RL+ +C+P+NPTG+V E+AR + P +LV+
Sbjct: 127 LTPDHTHDLD--AMAAAITDRTRLIFVCNPNNPTGTVVTP---AELARFLDAVPADVLVV 181
Query: 148 SDEIYEHIIYAPAT---------HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 198
DE Y + H + L RT FSKA+ + G R+GY G
Sbjct: 182 LDEAYVEYVRDDDVPDGLELVRDHPNVVVL-----RT-----FSKAYGLAGLRVGYAVGH 231
Query: 199 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 258
+AA K+ F +S++Q A +A+L A E++ + V A RD + +
Sbjct: 232 PEVIAALRKVAVPF--SVNSLAQAAAIASLA---AEDELLER-VDAVVAERDRVRAALRA 285
Query: 259 LEGVKMSEPQGAF 271
G + Q F
Sbjct: 286 -AGWTVPPSQANF 297
|
Length = 352 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 5e-27
Identities = 76/317 (23%), Positives = 147/317 (46%), Gaps = 27/317 (8%)
Query: 28 KENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDE---VIIPAPFWVSYPEMARIADAT 83
+ G+ PD Q+L S G+K++I L P ++ VI P + Y A A
Sbjct: 51 RRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGE 110
Query: 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 143
P + + + FLL + +E + E+++++ + P NPTG+ P++ L E + +H
Sbjct: 111 PTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHG- 169
Query: 144 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 203
+++ SDE Y I + H+ +L E L + SK MTG+R G++AG + ++
Sbjct: 170 IILCSDECYTEIYFGEPPHS---ALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKLIS 226
Query: 204 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 263
K+++ F + Q A AA ++ V + K F+ +RD ++ F + G++
Sbjct: 227 FLRKLRANFGVASPDFVQAAAKAA----WSDDNHVLERRKIFKRKRDLFIEFFNK-VGLE 281
Query: 264 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--GDDTCI 321
P FYL++ + +++ LL+ + + PG+ F G++ +
Sbjct: 282 YLYPDATFYLWVKVPSGI-----------DAKDYALRLLE-NGIVVAPGENFGSGEEGYV 329
Query: 322 RISYAASLTTLQAAVER 338
R++ +L + A+
Sbjct: 330 RVALVPTLEECEEALRL 346
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 4e-26
Identities = 79/309 (25%), Positives = 142/309 (45%), Gaps = 15/309 (4%)
Query: 37 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 96
D +++ +G +IL A+ A+C GD +++PAP + Y + + R +++
Sbjct: 105 DNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWE 164
Query: 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 156
D + + ++++ LI+ +PSNP GS + + +++I R + + RL ++SDEIY ++
Sbjct: 165 ADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIR-LCEELRLPLISDEIYAGMV 223
Query: 157 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAA----CNKIQSQ 211
+ AT TS A R + + G +K + GWRLG+ + H K
Sbjct: 224 FNGATFTSVADFDTTVPR-VILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGM 282
Query: 212 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 271
G S+ Q A A L E + ++V E L GE G+ + P+G+
Sbjct: 283 LVCGPCSVVQAALGEA--LLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSM 340
Query: 272 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTT 331
+L F I++ LL++ V ++PG+ F R++ + +
Sbjct: 341 FLMSRLDLEK------FRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEV 394
Query: 332 LQAAVERIK 340
L+ AVERIK
Sbjct: 395 LREAVERIK 403
|
Length = 412 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 6e-26
Identities = 70/304 (23%), Positives = 133/304 (43%), Gaps = 17/304 (5%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 95
++ ++G+ ++I + A+ PGDEV++ P + S +A P F
Sbjct: 69 AHVVMTTHGSSEAIYLVLTALLRPGDEVVVVDPAYHSLSHLAVATGCEVRPWPLLAVRGF 128
Query: 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155
D L + LT ++R +++ P NPTG+ LDE+ A+ +L+ D + +
Sbjct: 129 RPDLDALRALLTPRTRAVVVNFPHNPTGASVTPRELDELLERAARSGAVLLW-DNAFADL 187
Query: 156 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 215
++ +++R ++ SKAF + G R+G+ GP +A +++ T
Sbjct: 188 VH---DAPPLPDPSALYDRVISFGTLSKAFGLPGLRVGWCVGPADLLAELVRLRDYTTLS 244
Query: 216 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 275
S + + +A + + +A + ++ +A RR L + + V+ + P+G F
Sbjct: 245 LSPLVEL--LAEVAVEHADALIGPRLAEARANRRRLLDWAAAHPDVVRCTPPEGGVAAFP 302
Query: 276 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAA 335
F + LCR LL + V LVPG FG +R+ + S L+A
Sbjct: 303 RFP-----------GHADVTDLCRRLLARHGVLLVPGSCFGAADRMRLGFGGSSAELRAG 351
Query: 336 VERI 339
+ R+
Sbjct: 352 LARL 355
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-24
Identities = 66/254 (25%), Positives = 122/254 (48%), Gaps = 25/254 (9%)
Query: 34 YTPDQILVS-NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS 92
+ I+V +G + I + PGDEVIIP P + Y A+ A PV +
Sbjct: 84 VPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYA--KRE 141
Query: 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152
E+F LD + + +TEK++++ LC+P+NPTG++ P+ ++I +I+ L+ + DE Y
Sbjct: 142 EDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPE---EDIRKILESTDALVFV-DEAY 197
Query: 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 212
+ +A +T A ++ + FSK F + G R+GY P+ + + ++ F
Sbjct: 198 --VEFAEYDYTPLA---LEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTPF 252
Query: 213 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAF 271
+ + +SQ A +AAL + E + K ++ + R++L + P A
Sbjct: 253 S--LTRLSQAAAIAAL----SDKEYIEKSIEHGIKSREYL------YNELPFKVYPSEAN 300
Query: 272 YLFIDFSTYYGSEA 285
++ +D + E
Sbjct: 301 FVLVDVTPMTAKEF 314
|
Length = 361 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 84/312 (26%), Positives = 149/312 (47%), Gaps = 22/312 (7%)
Query: 36 PD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
P+ + +V+ G+K+ + +LA GD V++P P + + A IA A +P +
Sbjct: 90 PESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD 149
Query: 95 FLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151
F + LE + E K +++IL PSNPT +++ + ++ +LV+ D
Sbjct: 150 FFNE---LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRY-DVLVVHDLA 205
Query: 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 211
Y I+Y S +PG + + SK++ M GWR+G++ G V+A +I+S
Sbjct: 206 YADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSY 265
Query: 212 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 271
G + Q A +AAL + V + + ++ RRD LVK E G + P+ +
Sbjct: 266 HDYGTFTPLQVAAIAALE---GDQQCVRDIAEQYKRRRDVLVKGLHEA-GWMVEMPKASM 321
Query: 272 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASL 329
Y++ Y + G +E + + LL++A+V + PG FGD DT +R + +
Sbjct: 322 YVWAKIPEPYAA----MGSLEFA----KKLLNEAKVCVSPGIGFGDYGDTHVRFALIENR 373
Query: 330 TTLQAAVERIKK 341
++ A+ IK
Sbjct: 374 DRIRQAIRGIKA 385
|
Length = 395 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 5e-24
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 11/176 (6%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD---ATPVILPTRI 91
P+ IL +NGA + + A+ PGD VI P +Y ++ I + A +
Sbjct: 79 KPENILQTNGATGANFLVLYALVEPGDHVISVYP---TYQQLYDIPESLGAEVDYWQLKE 135
Query: 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151
+L D L + ++L+ + + +NPTG++ + L+EI I A+ VLSDE+
Sbjct: 136 ENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEI-ARSVDAYVLSDEV 194
Query: 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
Y + S S+ ++E+ ++ N SK +++ G R+G+IA + + K
Sbjct: 195 YRPL----DEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRK 246
|
Length = 373 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 6e-23
Identities = 87/321 (27%), Positives = 154/321 (47%), Gaps = 29/321 (9%)
Query: 36 PD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR---IADATPVILPTRI 91
P+ +++ + G+K+ + V A+ +PGD I+P P +YP ++ +A +P
Sbjct: 94 PETEVVATMGSKEGYVHLVQAITNPGDVAIVPDP---AYPIHSQAFILAGGNVHKMPLEY 150
Query: 92 SENFLLDP----KVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 144
+E+F LD + LE L E K + +++ P NPT + K+ + + + AK R
Sbjct: 151 NEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVAL-AKKERF 209
Query: 145 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 204
++SD Y I + S + G + + SK++ M GWR+G++ G K V A
Sbjct: 210 YIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGA 269
Query: 205 CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 264
KI+S G + Q A AL V ++ + +R+RRD L++SF G ++
Sbjct: 270 LKKIKSWLDYGMFTPIQVAATIALD---GDQSCVEEIRETYRKRRDVLIESFAN-AGWEL 325
Query: 265 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIR 322
+P+ + +++ G +E S + LL +A+VA+ PG FG+ D +R
Sbjct: 326 QKPRASMFVWAKIPEPARH----LGSLEFS----KQLLTEAKVAVSPGIGFGEYGDEYVR 377
Query: 323 ISYAASLTTLQAAVERIKKGL 343
I+ + ++ A IKK L
Sbjct: 378 IALIENENRIRQAARNIKKFL 398
|
Length = 403 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 2e-22
Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 19/242 (7%)
Query: 33 SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS 92
S P I V NG+ + I +LA + GD VI P P + Y ++IA A + P ++
Sbjct: 73 SVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEI--PVKLK 130
Query: 93 ENFLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151
E++ D ++ + +L+ LC+P+NPTGSV + ++I +I+ K ++V+ +
Sbjct: 131 EDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIER---EDIIKIIEKSRGIVVVDEAY 187
Query: 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 211
+E Y + + +E + + SKAF + G R+GY ++ + N ++S
Sbjct: 188 FE--FYG----NTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSP 241
Query: 212 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 271
+ +S+SQ + L G V+ + V R+ L+K ++ G+K+ + F
Sbjct: 242 YN--INSLSQVIALKVLRTG-----VLKERVNYILNERERLIKELSKIPGIKVYPSKTNF 294
Query: 272 YL 273
L
Sbjct: 295 IL 296
|
Length = 351 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 8e-22
Identities = 83/323 (25%), Positives = 140/323 (43%), Gaps = 28/323 (8%)
Query: 32 LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI 91
L D+ L++ GA +S+ + A SPGD + P P ++ A A + +P
Sbjct: 79 LGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYS 138
Query: 92 SE-NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150
E N+ L P++++ + E +RL+ L P NP GS Y + + E A I A+ +L D
Sbjct: 139 EECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEI-ARDNDAFLLHDC 197
Query: 151 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 210
Y +A + P E T+T FSK F M G R+G + + I
Sbjct: 198 TYRD--FAREHTLAAEYAP---EHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVI 252
Query: 211 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQG 269
G + I+Q+A +A L E + ++ + + + + ++ E+EGV + P
Sbjct: 253 N-DLGTNVIAQEAAIAGL---KVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSH 308
Query: 270 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG----DAFGDDTCIRISY 325
+ ID S G + E L YLL++ ++ + G FGD IR+S+
Sbjct: 309 GNMMVIDISEA------GI----DPEDLVEYLLER-KIFVRQGTYTSKRFGDRY-IRVSF 356
Query: 326 AASLTTLQAAVERIKKGLLTLRP 348
+ ++ E + TLR
Sbjct: 357 SIPREQVEVFCEEFPDVVETLRT 379
|
Length = 380 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 2e-20
Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 30/291 (10%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 95
P++I++ NG+ + + A PGDEVI + YP A+ A PV +P ++++
Sbjct: 84 PERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVP---AKDY 140
Query: 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIYE 153
D + + +T ++RL+ + +P+NPTG+ P +E+ R +A P L+VL DE Y
Sbjct: 141 GHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPA---EEVERFLAGVPPDVLVVL-DEAYA 196
Query: 154 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 213
+ L + + FSKA+ + G R+GY P + A N+++ F
Sbjct: 197 EYVRRKDYEDGLE-LVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQPFN 255
Query: 214 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 273
+S++ A VAAL V K E +L + EL G++ G F L
Sbjct: 256 --VNSLALAAAVAAL----DDDAFVEKSRALNAEGMAWLTEFLAEL-GLEYIPSVGNFIL 308
Query: 274 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324
F +++ + LL + V + P +G +RI+
Sbjct: 309 VD------------FDDGKDAAEAYQALLKRG-VIVRPVAGYGLPNALRIT 346
|
Length = 367 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 4e-20
Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 15/219 (6%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
+P+Q+ ++NG ++ A+ PGD V++P P + Y AR P +++
Sbjct: 81 SPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADD 140
Query: 95 FLLDP-KVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153
F VL++ E R++ L SP NPTGS P + ++ +A + LV+ DE Y
Sbjct: 141 FEQTADTVLDAYDGE--RIVYLTSPHNPTGSEIPLDEVEALAERTDEET--LVVVDEAYG 196
Query: 154 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 213
P S +L + + FSKA+ + G RLGY P+ + A ++ + F
Sbjct: 197 EFAERP----SAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVNTPFA 252
Query: 214 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252
AS ++ +AG+AAL E V + V+ R R+++
Sbjct: 253 --ASELACRAGLAALD----DDEHVERTVETARWAREYI 285
|
Length = 357 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 5e-20
Identities = 90/336 (26%), Positives = 136/336 (40%), Gaps = 54/336 (16%)
Query: 35 TPDQILVSNGAKQSI--LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI------ 86
P++I +S+GAK + LQ++ P + V + P + +Y + +A V+
Sbjct: 94 DPEEIFISDGAKCDVFRLQSLFG---PDNTVAVQDPVYPAYLDSNVMAGRAGVLDDDGRY 150
Query: 87 -----LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 141
LP NF+ P++ E + ++ LCSP+NPTG+V K L E+ +H
Sbjct: 151 SKITYLPCTAENNFI--PELPEEPHID---IIYLCSPNNPTGTVLTKEQLKELVDYANEH 205
Query: 142 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-- 199
L+L D Y I P+ S +PG + FSK TG RLG+ PK
Sbjct: 206 -GSLILFDAAYSAFISDPSLPHSIFEIPGARFCAIEFRSFSKTAGFTGVRLGWTVVPKEL 264
Query: 200 -----HFVAAC-NKIQSQFTSGASSISQKAGVAAL-GLG-YAGGEVVSKMVKAFRERRDF 251
H V + Q +GAS Q+A A G G E +S + E
Sbjct: 265 TYADGHSVIQDWERRQCTKFNGASYPVQRAAEAGYAGEGLQPILEAISY----YMENARI 320
Query: 252 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311
L K+ E G K+ + A YL++ + +S +LL + V P
Sbjct: 321 LRKAL-EAAGFKVYGGEHAPYLWVKTP-----------EGISSWDFFDFLLYEYHVVGTP 368
Query: 312 GDAFGDDTC----IRISYAASLTTLQAAVERIKKGL 343
G FG +R S + A ERIK+ L
Sbjct: 369 GSGFG--PSGEGFVRFSAFGKRENIIEACERIKEAL 402
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 2e-19
Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 17/248 (6%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILP-TRIS 92
P+Q+L+ G+ ++I V A+C PG D V++ P + Y AR+ +A V +P +
Sbjct: 75 APEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGA 134
Query: 93 ENFLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDE 150
+ F D P ++ + L ++L+ LCSPSNP GS LD+I R + A + LV+ DE
Sbjct: 135 DGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIA---LDQIERALQALQGKALVVVDE 191
Query: 151 IYEHIIYAPATHTSFASLPGMWE-RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 209
Y P+ A + RTL SKA A+ R+G + +A + Q
Sbjct: 192 AYGEFSDVPSAVGLLARYDNLAVLRTL-----SKAHALAAARIGSLIANAELIAVLRRCQ 246
Query: 210 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 269
+ + + +A L V ++ V R R+ L + +L GV+ P
Sbjct: 247 APYPVPTPCAA----LAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQ 302
Query: 270 AFYLFIDF 277
+L + F
Sbjct: 303 GNFLLVRF 310
|
Length = 364 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 4e-19
Identities = 77/311 (24%), Positives = 142/311 (45%), Gaps = 25/311 (8%)
Query: 37 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI----- 91
D+++++ G + ++ AV A + GD+V I P + + ++ + ++P ++
Sbjct: 103 DELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEG--EMVPVQLDYLSA 160
Query: 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151
+ LD LE R+ + +P+NP G VY + +IA + ++ V+ D++
Sbjct: 161 DKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRY-GATVIVDQL 219
Query: 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 211
Y ++Y ++T +LP E +T+ G SK +++G+RLG G + K+Q+
Sbjct: 220 YSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQAI 279
Query: 212 FTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 270
+ A+ SQ A L ++ + + + + RD L++ +EGV + PQ
Sbjct: 280 VSLRAAGYSQ----AVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAG 335
Query: 271 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT--CIRISYAAS 328
YLF S + F KI L +A V + PG F T IR++++
Sbjct: 336 SYLFPRLPRLAVSLHD-FVKI---------LRLQAGVIVTPGTEFSPHTADSIRLNFSQD 385
Query: 329 LTTLQAAVERI 339
AA ERI
Sbjct: 386 HAAAVAAAERI 396
|
Length = 405 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 1e-18
Identities = 77/323 (23%), Positives = 139/323 (43%), Gaps = 40/323 (12%)
Query: 37 DQILVSNGAKQSILQAVLAVCSPGDE--VIIPAPFWVSYPEMARIADATPVILPTRISEN 94
+L NG ++++ AV +PG V++P PF+ Y A +A A P L
Sbjct: 91 RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENG 150
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIY 152
FL D + + + +LL +CSP NPTG+V LD + +++ + ++ SDE Y
Sbjct: 151 FLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLS---LDTLKKLIELADQYGFIIASDECY 207
Query: 153 EHIIY----APATHTSFASLPGM--WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+ + PA A+ G + R L + SK + G R G++AG + A
Sbjct: 208 SELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFL 267
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
+ ++ +Q A +AA + + V + +RE+ +++ G++ +++
Sbjct: 268 RYRTYHGCAMPIPTQLASIAA----WNDEQHVRENRALYREKFAAVLEILGQVLDLEL-- 321
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT------- 319
P FYL+ + G + E+ R L ++ V ++PG +
Sbjct: 322 PDAGFYLWP--------KVPG-----DDEAFARALYEEENVTVLPGRFLAREAEGVNPGE 368
Query: 320 -CIRISYAASLTTLQAAVERIKK 341
+RI+ A L A ERI+
Sbjct: 369 GRVRIALVAPLEECVEAAERIRS 391
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (210), Expect = 3e-18
Identities = 69/325 (21%), Positives = 135/325 (41%), Gaps = 28/325 (8%)
Query: 30 NGLSY--TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV-- 85
N L Y +PD + ++ G K + + + P +++P P +P++ A +
Sbjct: 89 NDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRP---GFPDVETYAIFHHLEI 145
Query: 86 ----ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 141
+LP + E +D +E+ E + +++ +P NP GSVY L++IA A+
Sbjct: 146 RHFDLLPEKGWE---VDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAE-TARK 201
Query: 142 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI--AGPK 199
+LV++DE+Y HI++ L +T+ SK + + GW LG++ P
Sbjct: 202 LGILVIADEVYGHIVFGSKPFVPM-GLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPS 260
Query: 200 HFVAAC---NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 256
+ C + I+ + L + SK + R F
Sbjct: 261 GLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKL 320
Query: 257 GELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315
E+ + + +GAF+ + + + IE+ C L + + ++PG
Sbjct: 321 KEIPCIMCPQKAEGAFFALVKLNLLLLED------IEDDMEFCLKLAKEESLIILPGVTV 374
Query: 316 GDDTCIRISYAASLTTLQAAVERIK 340
G +RI++A ++L+ + R+K
Sbjct: 375 GLKNWLRITFAVEQSSLEDGLGRLK 399
|
Length = 409 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 4e-18
Identities = 57/243 (23%), Positives = 92/243 (37%), Gaps = 27/243 (11%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 95
+L NGA Q + + + +PG V++ AP + Y R A V LP
Sbjct: 64 AASVLPVNGA-QEAIYLLPRLLAPGR-VLVLAPTYSEYARAWRAAGHEVVELP------- 114
Query: 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155
D L + L E + LL++C+P+NPTG + P L +A + LV+ DE
Sbjct: 115 --DLDRLPAALEE-ADLLVVCNPNNPTGRLIPPETLLALAARLRARGGWLVV-DE----- 165
Query: 156 IYAPAT-HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 214
+ T S A + + + +K F + G RLG++ +A ++
Sbjct: 166 AFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALIAR---LREALGP 222
Query: 215 GA-SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 273
+ + AG AAL A + R L L G+++ F L
Sbjct: 223 WTVNGPALAAGRAAL----ADTAWQAATRARLAAERARLAALLARLGGLRVVGGTALFLL 278
Query: 274 FID 276
Sbjct: 279 VRT 281
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 1e-17
Identities = 81/331 (24%), Positives = 151/331 (45%), Gaps = 44/331 (13%)
Query: 32 LSYT--PDQILVSNGAKQSI--LQAVLAVCSPGDEVIIPAPFWVSYPEMA-------RIA 80
L Y D I ++ G Q+I + +VLA PG +++P P + Y A R
Sbjct: 111 LPYELSTDDIYLTAGCAQAIEIIMSVLA--QPGANILLPRPGYPLYEARAVFSGLEVRHF 168
Query: 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 140
D +LP R E +D + +E+ E + +++ +P+NP GSVY L +IA A+
Sbjct: 169 D----LLPERGWE---VDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAE-TAR 220
Query: 141 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT---LTVNGFSKAFAMTGWRLGYIA- 196
+LV++DE+Y+H+ + F + G++ LT+ SK + + GWRLG+IA
Sbjct: 221 KLGILVIADEVYDHLTFG---SKPFVPM-GVFGEVAPVLTLGSISKRWVVPGWRLGWIAT 276
Query: 197 -GPKHFVAACNKIQS-----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 250
P + + S ++ ++ Q A + + + E +K + +E D
Sbjct: 277 CDPNGILKETKVVDSIRNYLNISTDPATFVQGA-IPQI-IANTKEEFFTKTLGLLKETAD 334
Query: 251 FLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309
+ E++ + +P+G+ ++ + I++ C L + V +
Sbjct: 335 ICYEKIKEIKCITCPHKPEGSMFVMVKLDLSC------LSGIKDDMDFCCKLAKEESVVV 388
Query: 310 VPGDAFGDDTCIRISYAASLTTLQAAVERIK 340
+PG A G +RI++A +L+ +ER+K
Sbjct: 389 LPGSALGMKNWLRITFAIDPPSLEDGLERLK 419
|
Length = 430 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 67/296 (22%), Positives = 122/296 (41%), Gaps = 42/296 (14%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 95
+Q+L G + I A+ +PG ++ P + Y A I A +P + +
Sbjct: 81 EEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DG 137
Query: 96 LLDPKVLESKLTEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIY-E 153
D + + + E+++++ +C+P+NPTG+ V + LL + + +LV+ DE Y E
Sbjct: 138 GHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESV---PSHVLVVLDEAYYE 194
Query: 154 HIIYAPATHT-----SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 208
++ T + +L + RT FSKA+ + R+GY + + N
Sbjct: 195 YVTAEDYPDTLPLLEKYENL--IVLRT-----FSKAYGLAALRVGYGIASEELIEKLNIA 247
Query: 209 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 268
+ F + + I+Q A +AAL + + V+ E + E G+ Q
Sbjct: 248 RPPFNT--TRIAQYAAIAALE----DQAFLKECVEKNAEGLEQYYAFCKEY-GLFYYPSQ 300
Query: 269 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324
F +F+D ++ L LL K + G A G T +RI+
Sbjct: 301 TNF-IFVDTG-------------RDANELFEALLKKGYIVR-SGAALGFPTGVRIT 341
|
Length = 359 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-17
Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 21/252 (8%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 95
+ ILV GA + I + V PGD++I P + Y A + A + +P + +F
Sbjct: 103 SENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVP--RTPDF 160
Query: 96 LLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
LD P+++E+ T K +LL L SP+NP GS+ + L +I + P L+VL DE Y
Sbjct: 161 SLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILEL----PILVVL-DEAYIE 215
Query: 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 214
+T S ++ + + FSK + G R+GY A P + + + +
Sbjct: 216 F----STQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYN- 270
Query: 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 274
S ++ A AAL + + + A E R+ L FG L+ V EP + F
Sbjct: 271 -VSVAAEVAACAALS----NPKYLEDVKNALVEERERL---FGLLKEVPFLEPYPSDANF 322
Query: 275 IDFSTYYGSEAE 286
I G +A+
Sbjct: 323 ILCRVTSGRDAK 334
|
Length = 380 |
| >gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 9e-16
Identities = 86/347 (24%), Positives = 130/347 (37%), Gaps = 69/347 (19%)
Query: 31 GLSYTPDQILVSNGAK------QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 84
G + D+I +S+GAK I P + + + P + Y + +A T
Sbjct: 94 GCDISADEIFISDGAKCDTGNILDIF-------GPDNTIAVTDPVYPVYVDTNVMAGRTG 146
Query: 85 -----------VILPTRISENFLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 132
V LP NF+ + P+ EK ++ LC P+NPTG+V K +
Sbjct: 147 EANEDGRYSGIVYLPCTAENNFVPELPE-------EKVDIIYLCFPNNPTGTVLTK---E 196
Query: 133 EIARIV--AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 190
++ V AK L+L D YE I P+ S + G E + FSK TG
Sbjct: 197 QLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGT 256
Query: 191 RLGYIAGPKHFVAAC------------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 238
R Y PK N+ QS +G S I Q+A A G +
Sbjct: 257 RCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSP--EGKAQI 314
Query: 239 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLC 298
+++ + E + + G ++ A Y+++ S + F K
Sbjct: 315 KELIDYYMENAKIIREGLESA-GFEVYGGVNAPYIWVKTPDGMSSW-DFFDK-------- 364
Query: 299 RYLLDKAQVALVPGDAFGDDTC----IRISYAASLTTLQAAVERIKK 341
LL +A V PG FG R+S S + A+ERIKK
Sbjct: 365 --LLQEANVVGTPGSGFG--PSGEGYFRLSAFGSRENVLEAMERIKK 407
|
Length = 409 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 77.5 bits (190), Expect = 1e-15
Identities = 73/314 (23%), Positives = 134/314 (42%), Gaps = 18/314 (5%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
TP+ I ++ G Q I ++ P +++P P + Y A + +
Sbjct: 130 TPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKE 189
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
+ +D + +E+ E + +++ +P+NP G+VY + L ++A A+ ++V+SDE+Y+
Sbjct: 190 WEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAE-TARKLGIMVISDEVYDR 248
Query: 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA--GPKHFVAACNKIQS-- 210
I+ S + LT+ G SK + + GW++G+IA P+ +QS
Sbjct: 249 TIFGDNPFVSMGKFASIVP-VLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIK 307
Query: 211 ---QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SE 266
T ++I Q A A L A +K K + D + ++ V +
Sbjct: 308 QNLDVTPDPATIIQAALPAI--LEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKK 365
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
P+ YL E I++ C L + + +PGDA G +RI+
Sbjct: 366 PESCTYLLTKL------ELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIG 419
Query: 327 ASLTTLQAAVERIK 340
L+ A+ER+K
Sbjct: 420 VEAHMLEDALERLK 433
|
Length = 462 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 7e-15
Identities = 58/250 (23%), Positives = 112/250 (44%), Gaps = 28/250 (11%)
Query: 32 LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI-LPTR 90
+ I V NG+ + I + L G ++I P + Y A++ + PVI +P +
Sbjct: 68 YGLDAENIAVGNGSDELI--SYLVKLFEGKHIVITPPTFGMYSFYAKL-NGIPVIDVPLK 124
Query: 91 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150
E+F +D + + K + + + +CSP+NPTG++ P+ +EI +++ V+ DE
Sbjct: 125 --EDFTIDGERIAEK-AKNASAVFICSPNNPTGNLQPE---EEILKVL--ETGKPVVLDE 176
Query: 151 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 210
Y A + S L + + + FSKAF + G R GY + + A +I+
Sbjct: 177 AY-----AEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKP 231
Query: 211 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 270
F+ ++ K + L L + ++ + + + R+ + + GE + P A
Sbjct: 232 PFSLN--ILTMK--IVRLALDHYD--LIEERIDYIIKERERVRRELGE-----YAYPSDA 280
Query: 271 FYLFIDFSTY 280
+L + Y
Sbjct: 281 NFLLLKLDAY 290
|
Length = 337 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 9e-15
Identities = 75/323 (23%), Positives = 143/323 (44%), Gaps = 38/323 (11%)
Query: 31 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89
GL+ P+ ++L G+++ LAV +PGD ++ P + S+ +A +P
Sbjct: 86 GLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPL 145
Query: 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV--- 146
R +FL + +++ ++RL++L P NPT ++ P + E +H +LV
Sbjct: 146 RAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDF 205
Query: 147 -LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGPKHFVA 203
D +++ + P+ L E+++++ F SK++ M G+R+G+ G +
Sbjct: 206 PYVDLVFDGEVEPPSI------LQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQ 259
Query: 204 ACNKIQSQFTSGASSISQKAG-----VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 258
A ++++ +Q G +AAL V + V+ FR+RRD + + +
Sbjct: 260 ALRQVKA-----VVDFNQYRGILNGAIAALT---GPQATVQQTVQIFRQRRDAFINALHQ 311
Query: 259 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD- 317
+ G + P+ Y++ + NS C L+ + VA PG FG
Sbjct: 312 I-GWPVPLPEATMYVWAKLPEPWQG---------NSVEFCTQLVAQTGVAASPGSGFGKS 361
Query: 318 -DTCIRISYAASLTTLQAAVERI 339
+ +R + L+ AVERI
Sbjct: 362 GEGYVRFALVHDPDILEEAVERI 384
|
Length = 388 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 81/327 (24%), Positives = 149/327 (45%), Gaps = 34/327 (10%)
Query: 34 YTPDQILVSNGAKQS--ILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPV-ILPT 89
+ PD+I+++ GA + +L +LA PGD +++P P+ YP R + T V I+P
Sbjct: 118 FDPDRIVLTAGATAANELLTFILA--DPGDALLVPTPY---YPGFDRDLRWRTGVKIVPI 172
Query: 90 R--ISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 141
S NF + P+ LE+ E + R +++ +PSNP G+ +++L++I V +
Sbjct: 173 HCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRK 232
Query: 142 PRLLVLSDEIYEHIIYAPATHTSFASL------PGMWERTLTVNGFSKAFAMTGWRLGYI 195
LV SDEIY +++ + S A + G+ ER V SK + G+R+G I
Sbjct: 233 NIHLV-SDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTI 291
Query: 196 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 255
V + S FT SS +Q + L + + R+R + +V+
Sbjct: 292 YSYNDKVVTTARRMSSFTL-VSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQG 350
Query: 256 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA- 314
G++ + + +++ S + E +L +L + ++ + PG +
Sbjct: 351 LRR-AGIECLKGNAGLFCWMNLSPLLET-----PTREGELALWDSILREVKLNISPGSSC 404
Query: 315 -FGDDTCIRISYA-ASLTTLQAAVERI 339
+ R+ +A S TL+ A++RI
Sbjct: 405 HCSEPGWFRVCFANMSEDTLEVALKRI 431
|
Length = 447 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 6e-14
Identities = 81/356 (22%), Positives = 133/356 (37%), Gaps = 70/356 (19%)
Query: 35 TPDQILVSNGAKQSI---LQAVLAVCSPGDEVIIPAPFWVSYP-EMARIA--DATPVILP 88
P I +++GA I LQ ++ P D V+IP P YP A I V
Sbjct: 137 DPSDIFLTDGASSGIKLLLQLLIG--DPSDGVMIPIP---QYPLYSAAITLLGGKQVPYY 191
Query: 89 TRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 142
+ + LD + LE + R L++ +P NPTG V +++++EI + +
Sbjct: 192 LDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEK- 250
Query: 143 RLLVLSDEIYEHIIYAPATH-TSF----ASLPGMWERTLTVNGF---SKAF-AMTGWRLG 193
+++++DE+Y+ IY SF LP + + + F SK G R G
Sbjct: 251 GIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGG 310
Query: 194 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL--GYAGGEVVSKMVK-------- 243
Y I + Q +A++ L G + M
Sbjct: 311 YF--------ELTNIPPEVR------EQIYKLASINLCSNVVGQLMTGLMCNPPREGDAS 356
Query: 244 -------------AFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGF 288
+ + R + L ++EGV +GA Y F I+ EA+
Sbjct: 357 YPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKER 416
Query: 289 GKIENSESLCRYLLDKAQVALVPGDAFG--DDTC-IRISYAASLTTLQAAVERIKK 341
G C LL+ + +VPG FG T RI+ ++ V++IK+
Sbjct: 417 GL-APDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKE 471
|
Length = 481 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 26/169 (15%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISE 93
P+Q+LVS GA + I + A C PG D ++ P + Y A +PT +
Sbjct: 73 KPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL--D 130
Query: 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGS-VYPKNLLD--EIARIVAKHPRLLVLSDE 150
N+ LD + L + +++ +CSP+NPTG+ + P++L E+ R + +V++DE
Sbjct: 131 NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTR-----GKAIVVADE 184
Query: 151 IYEHIIYAPATHTSFASLPGMWE-----RTLTVNGFSKAFAMTGWRLGY 194
Y I + P S A + RTL SKAFA+ G R G+
Sbjct: 185 AY--IEFCP--QASLAGWLAEYPHLVILRTL-----SKAFALAGLRCGF 224
|
Length = 351 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-13
Identities = 76/321 (23%), Positives = 136/321 (42%), Gaps = 36/321 (11%)
Query: 37 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-------RIADATPVILPT 89
D + +++G Q+I A+ + PG +++P P + Y A R D +LP
Sbjct: 97 DDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVD----LLPE 152
Query: 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
+ E +D +E+ + + L++ +P NP G+VY L +IA A+ ++LV++D
Sbjct: 153 KGWE---VDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAE-TAEKLKILVIAD 208
Query: 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA---------GPKH 200
E+Y H+ + G LT+ SK + + GWRLG+ PK
Sbjct: 209 EVYGHLAFGSNPFVPMGVF-GSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPK- 266
Query: 201 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 260
V K A+ I +A V + L K + ++ D E+
Sbjct: 267 IVERIKKYFDILGGPATFI--QAAVPTI-LEQTDESFFKKTINILKQSSDICCDRIKEIP 323
Query: 261 GVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319
+ +P+G+ + + + I + C L + V ++PG A G
Sbjct: 324 CITCPHKPEGSMAVMVKLNLSL------LEDISDDIDFCFKLAREESVIILPGTAVGLKN 377
Query: 320 CIRISYAASLTTLQAAVERIK 340
+RI++AA ++L+ A+ RIK
Sbjct: 378 WLRITFAADPSSLEEALGRIK 398
|
Length = 409 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 34/250 (13%)
Query: 37 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 96
+ +++ NGA + I V P +V+I AP + Y + DA NF
Sbjct: 72 ENVILGNGATELIFNIVKVT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFA 129
Query: 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 156
+ VLE ++ E+ L+ LC+P+NPTG + K + +I + + ++ DE
Sbjct: 130 ANEIVLE-EIKEEIDLVFLCNPNNPTGQLISKEEMKKIL-DKCEKRNIYLIIDE------ 181
Query: 157 YAPATHTSFASLPGMWERTLTVN------------GFSKAFAMTGWRLGYIAGPKHFVAA 204
+F E +N F+K FA+ G RLGY +A
Sbjct: 182 -------AFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLA- 233
Query: 205 CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 264
K+ SI+ A +A L E + K ++ +E +DFL E +G+K+
Sbjct: 234 -EKLLQ--MREPWSINTFADLAGQTL-LDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKV 289
Query: 265 SEPQGAFYLF 274
+P F F
Sbjct: 290 YKPSVNFIFF 299
|
Length = 354 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-13
Identities = 71/263 (26%), Positives = 116/263 (44%), Gaps = 35/263 (13%)
Query: 37 DQILVSNGAKQSILQAVLAVCSPGDEVII--PA-PFWVSYPEM--ARIADATPVILPTRI 91
D+I++ NG++ I AV PGD V+ P+ P YP M AR + V
Sbjct: 89 DRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGAR-VERVTV------ 141
Query: 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDE 150
+ + D L + + R+L+ +PSNP GS D++AR++ A P L++ DE
Sbjct: 142 TPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTA---DQLARVLDATPPETLIVVDE 198
Query: 151 IYEHIIYAPATHTSFA-----SLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAA 204
Y ++ LP + RT FSKA+ + G R+GY + V
Sbjct: 199 AYAEYAAGDDYPSALTLLKARGLPWIVLRT-----FSKAYGLAGLRVGYGLVSDPELVGL 253
Query: 205 CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 264
+++++ F + +Q A +AAL + V+ + A RER +K G ++
Sbjct: 254 LDRVRTPFN--VNGAAQAAALAALDDEEHLAKGVA-LALAERER----LKKELAEMGYRI 306
Query: 265 SEPQGAFYLFIDFSTYYGSEAEG 287
+ P A +LF D + AE
Sbjct: 307 A-PSRANFLFFDARRPASAVAEA 328
|
Length = 371 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 3e-13
Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 15/207 (7%)
Query: 20 VQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79
+ F+ + +++ P+++++S GA + + + PGD +IP+P++ ++ R
Sbjct: 103 IAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRW 162
Query: 80 ADATPVI-LPTRISENFLLDPKVLE------SKLTEKSRLLILCSPSNPTGSVYPKNLLD 132
+I +P S+NF L + + +K + LIL +PSNP G++ K+ L
Sbjct: 163 RTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLT 222
Query: 133 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT-------VNGFSKAF 185
+ R V + LV+ DEIY ++A S A + + + V SK
Sbjct: 223 NLVRFVTRKNIHLVV-DEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM 281
Query: 186 AMTGWRLGYIAGPKHFVAACNKIQSQF 212
+ G+R+G + V +C + S F
Sbjct: 282 GLPGFRVGIVYSFNDSVVSCARKMSSF 308
|
Length = 496 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 84/317 (26%), Positives = 129/317 (40%), Gaps = 56/317 (17%)
Query: 7 SQGTLQMRVLWSFVQQFVINL--KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 64
++G L+ R +F+ L K G TPD I+ NG +I + + VI
Sbjct: 72 TKGVLETR-------EFLAELNNKRGGAQITPDDIIFFNGLGDAI-AKIYGLLRREARVI 123
Query: 65 IPAPFWVSYP-----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSR------LL 113
P+P +Y E A A PV N+ D LE+K+ K LL
Sbjct: 124 GPSP---AYSTHSSAEAAH-AGYPPVTYRLDPENNWYPDLDDLENKV--KYNPSIAGILL 177
Query: 114 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL----P 169
I +P NPTG+VYPK +L EI I A+ L ++ DEIY +I+Y + + P
Sbjct: 178 I--NPDNPTGAVYPKEILREIVDI-AREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVP 234
Query: 170 GMWERTLTVNGFSKAFAMTGWRLGYIA---GPK--HFVAACNKIQSQFTSGASSIS--QK 222
G+ + G SK G R G+I K F N I + S + Q
Sbjct: 235 GI-----ALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQM 289
Query: 223 AGVAALG----LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 278
A + Y + + K + +R + + ++ G+K++ GAFY+ + F
Sbjct: 290 AIPRIMSHPEYKNY-----LKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFE 344
Query: 279 TYYGSEAEGFGKIENSE 295
+ + IEN E
Sbjct: 345 DGVLNNKQSL-PIENPE 360
|
Length = 433 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEH 154
L DP + + L L +PSNP L++IA IV + P L++++D++Y
Sbjct: 237 LRDPSI---------KALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG- 286
Query: 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 196
+ + FA LP T+ V FSK F TGWRLG IA
Sbjct: 287 -TFVDDFRSLFAVLP---YNTILVYSFSKYFGATGWRLGVIA 324
|
Length = 527 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-12
Identities = 82/315 (26%), Positives = 128/315 (40%), Gaps = 47/315 (14%)
Query: 35 TPDQILVSNGAKQSI--LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS 92
P +L G K+ + L +L + PGD V+IP + +Y A +A ATPV
Sbjct: 79 DPTAVLPVIGTKELVAWLPTLLGL-GPGDTVVIPELAYPTYEVGALLAGATPV----AAD 133
Query: 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AKHPRLLVLSDE 150
+ LDP L+ L SP NPTG V +DE+ IV A+ +V SDE
Sbjct: 134 DPTELDP--------VGPDLIWLNSPGNPTGRVLS---VDELRAIVAWARERGAVVASDE 182
Query: 151 IYEHIIYAPAT----HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
Y + + G L V+ SK + G+R G++AG VA
Sbjct: 183 CYLELGWEGRPVSILDPRVCG--GDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELL 240
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
++ + Q A VAALG V++ + RR L + E G ++
Sbjct: 241 TVRKHAGLMVPAPVQAAMVAALG----DDGHVAEQKARYAARRAQLKPAL-EKAGFRIDH 295
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC--IRIS 324
+ YL ++T G E++ L + + + PGD +G +R++
Sbjct: 296 SEAGLYL---WAT------RG----EDAWDTVDRLAELG-ILVAPGDFYGPAGSQHVRVA 341
Query: 325 YAASLTTLQAAVERI 339
A+ + AAV R+
Sbjct: 342 LTATDERIAAAVARL 356
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|235115 PRK03317, PRK03317, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 70/251 (27%), Positives = 115/251 (45%), Gaps = 16/251 (6%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ G+ T + + +NG+ + + Q + A PG + P + +P +AR V
Sbjct: 80 AQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEG 139
Query: 88 PTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
P +F LD + + E + ++ L SP+NPTG+ P LD++ I+ P ++V
Sbjct: 140 PRA--ADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALP---LDDVEAILDAAPGIVV 194
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+ DE Y T ++ LP + R + SKAFA G RLGY+A V A
Sbjct: 195 V-DEAY-AEFRRSGTPSALTLLPE-YPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALR 251
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
++ + S+++Q A AAL + + V A R RD +V EL G++++
Sbjct: 252 LVRLPYH--LSAVTQAAARAAL----RHADELLASVAALRAERDRVVAWLREL-GLRVAP 304
Query: 267 PQGAFYLFIDF 277
F LF F
Sbjct: 305 SDANFVLFGRF 315
|
Length = 368 |
| >gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 63/237 (26%), Positives = 105/237 (44%), Gaps = 19/237 (8%)
Query: 39 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 98
+L+ NG+ + I LA PG V+ P P +V Y A++A V +P +F LD
Sbjct: 84 VLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLD 141
Query: 99 -PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 157
P +L + + L+ L P+NPTG+++ ++ RI+ P L+V+ DE Y
Sbjct: 142 LPAMLAAIAEHRPALVFLAYPNNPTGNLFDD---ADVERIIEAAPGLVVV-DEAY----Q 193
Query: 158 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 217
A S+ + L + SK + G RLGY+AG ++A +K++ + +
Sbjct: 194 PFAGD-SWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPPYN--VN 249
Query: 218 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 274
++Q + AL +V+ R R L + L GV + F L
Sbjct: 250 VLTQATALFAL----EHVDVLDAQAAQLRAERTRLAAALAALPGVTVFPSAANFILV 302
|
Length = 356 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-12
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 31/155 (20%)
Query: 59 PGDEVIIPAPFWVSYPEMARIAD---------ATPVILPTRISENF-------LLDPKVL 102
GD++ + P + Y E+ + A + + + L DP +
Sbjct: 183 KGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSI- 241
Query: 103 ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPAT 161
+ L + +PSNP +++I IVA P L++L+D++Y +
Sbjct: 242 --------KALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYG--TFVDDF 291
Query: 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 196
+ FA LP T+ V FSK F TGWRLG IA
Sbjct: 292 RSLFAELP---YNTIGVYSFSKYFGATGWRLGTIA 323
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 84/331 (25%), Positives = 131/331 (39%), Gaps = 59/331 (17%)
Query: 38 QILVSNGAKQ---SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
Q+L NG+++ + Q V+ PG V+ P PF+ Y A +A A P L + N
Sbjct: 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANN 151
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIY 152
F D + +++ +++LL +CSP NPTG+V P LD+ ++ A R ++ SDE Y
Sbjct: 152 FAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLP---LDDWKKLFALSDRYGFVIASDECY 208
Query: 153 EHIIYAPATHTSFASLP-------GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 205
I Y L ++R + + SK + G R G FVA
Sbjct: 209 SEI-YFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSG-------FVAGD 260
Query: 206 NKIQSQFT-------SGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFG 257
+ +F Q A +AA E V + +RE+ D +
Sbjct: 261 AALLKKFLLYRTYHGCAMPPAVQAASIAAWN-----DEAHVRENRALYREKFDAVTPILA 315
Query: 258 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG----- 312
+ V++ P FYL+ G + E R L V ++PG
Sbjct: 316 PVLDVQL--PDAGFYLWAKVP---GDDTE----------FARRLYADYNVTVLPGSYLAR 360
Query: 313 DAFGDDTC---IRISYAASLTTLQAAVERIK 340
+A G + +RI+ A L A ERI
Sbjct: 361 EAHGVNPGAGRVRIALVAPLAECVEAAERIV 391
|
Length = 396 |
| >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 22/166 (13%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT-RISE 93
P+QIL S GA ++I + A C PG + I A F +Y A A+ V + ++
Sbjct: 76 APEQILTSRGADEAIELLIRAFCEPGQDSI--ACFGPTYGMYAISAETFNVGVKALPLTA 133
Query: 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153
++ L +E + ++L+ +C+P+NPTG+V + +I +++ P +V+ DE Y
Sbjct: 134 DYQLPLDYIEQ--LDGAKLVFICNPNNPTGTVIDR---ADIEQLIEMTPDAIVVVDEAY- 187
Query: 154 HIIYAPATHTSFASLPGMWE-----RTLTVNGFSKAFAMTGWRLGY 194
I + P S A L + RTL SKAFA+ G R G+
Sbjct: 188 -IEFCPE--YSVADLLASYPNLVVLRTL-----SKAFALAGARCGF 225
|
Length = 354 |
| >gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 108 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHIIYAPATHTSF 165
E + L+ L +P NP GS +P +I + P LLVL DE Y APA +
Sbjct: 154 ENAPLVYLANPDNPMGSWHPA---ADIVAFIEALPETTLLVL-DEAYCET--APAG--AA 205
Query: 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGV 225
+ + + FSKA+ + G R+GY G + A +K+++ F G + I+Q A +
Sbjct: 206 PPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNHF--GMNRIAQAAAL 263
Query: 226 AALGLGYAGGEVVSKMVKAFRER 248
AAL EVV K + A R+R
Sbjct: 264 AALKDQAYLAEVVGK-IAAARDR 285
|
Length = 369 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 3e-10
Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 14/225 (6%)
Query: 30 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89
N L +Q+L +G + I AV GD ++ + Y A I +
Sbjct: 75 NKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVAL 134
Query: 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
N + D + S + ++++ +C+P+NPTG+ L + ++++ L+V+ +
Sbjct: 135 N---NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDE 190
Query: 150 EIYEHIIYAPATHTSFASLPGMWER---TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
YE++ T F + E+ L + FSKA+ + +R+GY G + + N
Sbjct: 191 AYYEYV-----TAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLN 245
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 251
++ F SS++QKA A G E+V + R+ F
Sbjct: 246 VVRLPFN--VSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESF 288
|
Length = 366 |
| >gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 33/256 (12%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRI 91
TP I V NG+ + I ++A C G+ I+ A S M I T PV+ R
Sbjct: 90 TPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFS---MYGILAQTLGIPVVRVGRD 146
Query: 92 SENFLLDPKVLESKLTEKS----RLLILCSPSNPTGSVYPKNLL--DEIARIVAKHPRLL 145
E F +D +S + + R++ + P++PTG N L E+ + + +L
Sbjct: 147 PETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTG-----NPLTAAELEWLRSLPEDIL 201
Query: 146 VLSDEIYEHIIYAPATHTSFASLPGMWERT--LTVNGFSKAFAMTGWRLGYIAGPKHFVA 203
V+ DE Y + + T + + + + + FSKAF + R+GY G +A
Sbjct: 202 VVIDEAY----FEFSQTTL---VGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIA 254
Query: 204 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 263
K++ + S SQ A AL E+++ + + +E RD L ++ EL ++
Sbjct: 255 VLEKVRLPYN--LPSFSQLAAQLALE---HRQELLAAIPEILQE-RDRLYQALQELPQLR 308
Query: 264 MSEPQGAFYLFIDFST 279
+ P A +L++ S
Sbjct: 309 VW-PSAANFLYLRLSQ 323
|
Length = 374 |
| >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-10
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV-I 86
+ GL D ++ G+ + + AVLA SP ++ P +Y R ADA +
Sbjct: 89 AQEGLP--ADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADP---TYEAGWRAADAQGAPV 143
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-RLL 145
+ + D K + + + L+ +C+P+NPTG+V P+ +I ++A P +
Sbjct: 144 AKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPR---ADIEWLLANKPAGSV 199
Query: 146 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 198
+L DE Y H AP S L + + + FSK + M G RLG A
Sbjct: 200 LLVDEAYIHFSDAP----SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAAR 248
|
Length = 370 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 83/326 (25%), Positives = 132/326 (40%), Gaps = 65/326 (19%)
Query: 35 TPDQILVSNGAKQSI-LQAVLAVCSPGDEVIIPAPFWVSYP--EM-ARIADATPVILPTR 90
P +L G+K+ + L PGD V+IP ++YP E+ AR+A AT V R
Sbjct: 85 DPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPE---LAYPTYEVGARLAGATVV----R 137
Query: 91 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AKHPRLLVLS 148
L P ++ L+ L SPSNPTG V +D + ++V A+ +V S
Sbjct: 138 ADSLTELGP--------QRPALIWLNSPSNPTGRVLG---VDHLRKVVAWARERGAVVAS 186
Query: 149 DEIYEHIIYAPAT----HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 204
DE Y + + G L V+ SK + G+R G++AG VA
Sbjct: 187 DECYLELGWDAEPVSILDPRVCG--GDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAE 244
Query: 205 CNKIQSQFTSGASSIS----QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 260
+++ A + Q A VAALG V + + + RR L + E
Sbjct: 245 LLEVRKH----AGMMVPAPVQAAMVAALG----DDAHVREQRERYARRRAVLRPAL-EAA 295
Query: 261 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-AQVALV--PGDAFGD 317
G ++ + YL + + E C + A+ ++ PGD +G
Sbjct: 296 GFRVDHSEAGLYL-------WATRGED----------CWDTVAWLAERGILVAPGDFYGP 338
Query: 318 DTC--IRISYAASLTTLQAAVERIKK 341
+R++ A+ + AAVER+
Sbjct: 339 AGAQHVRVALTATDERIAAAVERLAA 364
|
Length = 364 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 5e-09
Identities = 78/319 (24%), Positives = 136/319 (42%), Gaps = 40/319 (12%)
Query: 30 NGLSYTPDQILVSNGAKQSI-LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 88
+G P+ I +++GA ++ + L + S D ++ P P + Y A IA ++P
Sbjct: 185 DGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYS--ASIALHGGTLVP 242
Query: 89 TRISE--NFLLDPKVLESKLTEKS------RLLILCSPSNPTGSVYPKNLLDEIARIVAK 140
+ E + L+ L+ +L + R L++ +P NPTG V + +I K
Sbjct: 243 YYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEF-CK 301
Query: 141 HPRLLVLSDEIYEHIIYAP-ATHTSFASLP---GMWERTLTVNGF---SKAF-AMTGWRL 192
L++L+DE+Y+ +Y P SF + G E+ +++ F SK + G R
Sbjct: 302 QEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRG 361
Query: 193 GYIA----GPK-----HFVAA---CNKIQSQFTSGASSISQKAGVAALGLGYAGGE-VVS 239
GY+ + VA+ C+ I Q + K G + A + ++S
Sbjct: 362 GYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILS 421
Query: 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESL 297
+ + R L + LEGV ++ +GA YLF I AE ++
Sbjct: 422 SLAR----RAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDA-FY 476
Query: 298 CRYLLDKAQVALVPGDAFG 316
C+ LL+ + +VPG FG
Sbjct: 477 CKRLLNATGIVVVPGSGFG 495
|
Length = 534 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 60 GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 119
+VIIP + Y +AR A + P DP+ LE +L E++ ++ C+P+
Sbjct: 77 DRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLE-ELVERNSVVFFCNPN 127
Query: 120 NPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 178
NP G Y K L + + + L++ DE + I + S G E + +
Sbjct: 128 NPDGKFYNFKELKPLLDAVEDR--NALLILDEAF--IDFVK----KPESPEG--ENIIKL 177
Query: 179 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAAL 228
F+K++ + G R+GY+ G F A ++ ++ G++ G A L
Sbjct: 178 RTFTKSYGLPGIRVGYVKG---FEEAFRSVRMPWSIGST------GYAFL 218
|
Length = 311 |
| >gnl|CDD|173269 PRK14808, PRK14808, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 2e-08
Identities = 62/251 (24%), Positives = 111/251 (44%), Gaps = 36/251 (14%)
Query: 27 LKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
L +N +S V NGA + I +L D + P + Y A+ A +
Sbjct: 74 LSKNNVS-------VGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLE 122
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
+P D ++ E + E + I +P+NPTG V+ + +EI RI+ K +
Sbjct: 123 VP------LTKDLRIPEVNVGEGDVVFI-PNPNNPTGHVFER---EEIERIL-KTGAFVA 171
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
L + YE S+ L +E + FSKAF++ R+GY+ + F+ A N
Sbjct: 172 LDEAYYEF------HGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYN 225
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
+++ F S +SQ AL E+ + K E R+ + + E+ G ++++
Sbjct: 226 RVRLPFN--VSYVSQMFAKVAL----DHREIFEERTKFIVEERERMKSALREM-GYRITD 278
Query: 267 PQGAF-YLFID 276
+G F ++F++
Sbjct: 279 SRGNFVFIFME 289
|
Length = 335 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 20 VQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPEMAR 78
V +F+ + +G P+ I +++GA + ++Q + AV D V++P P + Y
Sbjct: 116 VAEFI--ERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATIS 173
Query: 79 IADATPVILPTRISENFLLDPKVLESKLTEKS------RLLILCSPSNPTGSVYPKNLLD 132
+ T V SEN+ LD L + + R +++ +P NPTG + L
Sbjct: 174 LLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 233
Query: 133 EIARIVAKHPRLLVLSDEIYEHIIY 157
EI + RL++L DE+Y+ IY
Sbjct: 234 EILKF-CYQERLVLLGDEVYQQNIY 257
|
Length = 407 |
| >gnl|CDD|235440 PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-07
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 114 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173
I +P+ PTG P L EI RI+A +P +V+ DE Y + + S L +
Sbjct: 149 IFPNPNAPTGIALP---LAEIERILAANPDSVVVIDEAY--VDFGGE---SAIPLIDRYP 200
Query: 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS-GASSISQKAGVAAL 228
L V FSK+ ++ G R+G+ G + A N++++ F S ++Q +AA+
Sbjct: 201 NLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAI 256
|
Length = 353 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 23/168 (13%)
Query: 37 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS-YPEMARIADATPVILPTRISENF 95
D+ + + A+LA+ PGDEVI+ A S Y A +A A PV +P +
Sbjct: 18 DKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYG 77
Query: 96 LLDPKVLE-SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
LD +LE K L+++ + G + P L EI +I ++ +L+L D
Sbjct: 78 GLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIAKEY-GILLLVD----- 128
Query: 155 IIYAPATHTSFAS----LPGMWERTLTVN-GFSKAFAMTGWRLGYIAG 197
A AS + V K + G G +
Sbjct: 129 -----AASAGGASPAPGVLIPEGGADVVTFSLHK--NLGGEGGGVVIV 169
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 73/286 (25%), Positives = 115/286 (40%), Gaps = 42/286 (14%)
Query: 66 PAPFWVSYPEMARIADATPVILPTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGS 124
P PF+ Y E A IA V+L EN F P + E +L E L+IL SP+NPTG
Sbjct: 115 PNPFYQIY-EGAAIASRAKVLLMPLTKENDF--TPSLNEKELQE-VDLVILNSPNNPTGR 170
Query: 125 VYPKNLLDEIARIVAKHPRLLVLSDE----IYEHIIYAPATHTSFASLPGMWERTLTVNG 180
L E ++ KH +L ++DE IYE+ S ++ L +N
Sbjct: 171 TLSLEELIEWVKLALKHDFIL-INDECYSEIYENTPPPSLLEASILVGNESFKNVLVINS 229
Query: 181 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240
SK + G R G+IAG + ++ + QKA A + E
Sbjct: 230 ISKRSSAPGLRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVA----WLDDE---- 281
Query: 241 MVKAFRE--RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLC 298
+ FR ++ K E+ G+ + P FY+++ ++N E
Sbjct: 282 HAEFFRNIYAKNL--KLAREILGITI--PPATFYVWL--------------PVDNDEEFT 323
Query: 299 RYLLDKAQVALVPGDAFGDDTC----IRISYAASLTTLQAAVERIK 340
+ L + ++PG G + +RI+ L+ A+E IK
Sbjct: 324 KKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIK 369
|
Length = 374 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 292 ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 343
SE C LL + V LVPG+ F + +RI Y TL+ ++++ + L
Sbjct: 317 MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFL 368
|
Length = 373 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-06
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 9/158 (5%)
Query: 39 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 98
IL NG +SI AV++ P +I+ P + Y + R ++ + L
Sbjct: 75 ILAGNGETESIF-AVVSGLKPRRAMIV-TPGFAEYRRALQQVGCEIRRYSLREADGWQLT 132
Query: 99 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158
+LE+ LT L LC+P+NPTG + + LL IA L+L + + I
Sbjct: 133 DAILEA-LTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDE 191
Query: 159 PATHTSFASLPGMWE-RTLTVNGFSKAFAMTGWRLGYI 195
A P +W R+LT K +A+ G RLGY+
Sbjct: 192 TGFIPQLADNPHLWVLRSLT-----KFYAIPGLRLGYL 224
|
Length = 356 |
| >gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 39 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 93
+ VS+G + L L PGDEVI+P+ +V+ + ATPV I P +
Sbjct: 37 VAVSSGT--AALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDP----D 90
Query: 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
+ +DP+++E+ +T +++ +I P + G+ +D I I +H L V+ D
Sbjct: 91 TYNIDPELIEAAITPRTKAII---PVHLYGNPAD---MDAIMAIAKRH-GLPVIED 139
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD. Length = 352 |
| >gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
P+ IL NGA + +L + V + P + Y R AT LP + +
Sbjct: 73 PPEWILPGNGAAE-LLTWAGRELAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQP 131
Query: 95 FLLDPKVLESKLTEKS--RLLILCSPSNPTGSVYPKN----LLDEIARIVAKHPRLLVLS 148
L++ + + L+L +P NPTG ++ + LL++ A +V + L
Sbjct: 132 SPGLTLRLQTLPPQLTPNDGLLLNNPHNPTGKLWSREAILPLLEQFALVVVDEAFMDFLP 191
Query: 149 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKH 200
+ + +I A + + L R+LT K +++ G RLGY IA P
Sbjct: 192 PDAEQSLIPCLAEYPNLIIL-----RSLT-----KFYSLPGLRLGYAIAHPDR 234
|
Length = 360 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 31/212 (14%)
Query: 22 QFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IA 80
+F+ ++ N +++ P++++++ GA + + + PGD ++P P+ YP R +
Sbjct: 97 EFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPY---YPGFDRDLK 153
Query: 81 DATPV-ILPT--------RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 131
T V I+P +I+E+ L + KL K + +++ +PSNP G+ + L
Sbjct: 154 WRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTEL 213
Query: 132 DE-IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-----------PGMWERTLTVN 179
+ + I AK+ L+ SDEIY ++ F S+ + R V
Sbjct: 214 NLLVDFITAKNIHLI--SDEIYSGTVFD---SPGFVSVMEVLKDRKLENTDVSNRVHIVY 268
Query: 180 GFSKAFAMTGWRLGYI-AGPKHFVAACNKIQS 210
SK + G+R+G I + + V+A K+ S
Sbjct: 269 SLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS 300
|
Length = 468 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 59 PGDEVII-PAPF-WVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 114
PGDE+++ P E+A+ A ++P + ++ LLD LE +T K++L+
Sbjct: 110 PGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIP--LDDDGLLDLDALEKLITPKTKLVA 167
Query: 115 LCSPSNPTGSVYPKNLLDEIARIVAKH 141
L SN TG+V P + EIA + +H
Sbjct: 168 LSHVSNVTGTVNP---VKEIAELAHEH 191
|
Length = 405 |
| >gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-RIA--DATPVILPTRI 91
TPD++L+ GA + A+LA P ++ F + PE A R A V+L
Sbjct: 74 TPDEVLLLAGAAEGF--ALLARLRPRRAAVVHPSF--TEPEAALRAAGIPVHRVVLD--- 126
Query: 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151
F LDP + + + + L+++ +P+NPT ++P L + R R+LV+ DE
Sbjct: 127 -PPFRLDP----AAVPDDADLVVIGNPTNPTSVLHPAEQLLALRR----PGRILVV-DEA 176
Query: 152 YEHIIYAPATHTSFA--SLPGMWE-RTLTVNGFSKAFAMTGWRLGYIAG 197
+ + P S A LPG+ R+LT K +++ G R+GY G
Sbjct: 177 FADAV--PGEPESLAGDDLPGVLVLRSLT-----KTWSLAGLRVGYALG 218
|
Length = 349 |
| >gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 30/122 (24%)
Query: 39 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 93
+ VS+G S L L PGDEVI+PA +V+ ATPV + P +
Sbjct: 43 LAVSSGT--SALHLALRALGIGPGDEVIVPAFTFVATANAVLQLGATPVFVDVDP----D 96
Query: 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL------LDEIARIVAKHPRLLVL 147
+ +DP +E+ +T +++ ++ P +L +D I I A+H L V+
Sbjct: 97 TYNIDPAAIEAAITPRTKAIM------------PVHLYGQPADMDAIRAIAAEH-GLPVI 143
Query: 148 SD 149
D
Sbjct: 144 ED 145
|
The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyzes the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin. Length = 362 |
| >gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
LP + N +P++L + L+ + SP NP G++ ++ L I+ I K LL
Sbjct: 106 LPFNLINN---NPEILNNY---NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLF 159
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 200
+ DE + I + P L + + +K + R+GYIA +
Sbjct: 160 I-DEAF--IDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDY 210
|
Length = 332 |
| >gnl|CDD|185378 PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 34 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 93
+I +++GA +I + + A PGD V + P ++S M R A + + +E
Sbjct: 139 PVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVD-AE 197
Query: 94 NFLLDPKVLESKLTEKSRLLILCSPS--NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151
+ P+ LE L + +R +IL +P NPTG + ++A++P++LV+ D+
Sbjct: 198 G--MQPEKLERALAQGARAVIL-TPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDH 254
Query: 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 184
+ + +P +P +R + SKA
Sbjct: 255 FALLSSSPYHSV----IPQTTQRWALIRSVSKA 283
|
Length = 431 |
| >gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 39 ILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 93
+ VS+G + L L + PGDEVI+P+ +V+ + A PV I P +
Sbjct: 53 VAVSSGT--AALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDP----D 106
Query: 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
+DP ++E+ +T +++ +I P + G +D I + +H L V+ D
Sbjct: 107 TLNIDPDLIEAAITPRTKAII---PVHLAGQPCD---MDAIMALAKRH-GLPVIED 155
|
Length = 374 |
| >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 59 PGDEVIIPAPFWVSYPEMARIA-DATPVILPTRISENFLLDPKVLESKLTEKSR----LL 113
GD V++P W +Y A V P E+ D L+ L ++
Sbjct: 92 QGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPI-FDEDGGFDTDALKEALQAAYNKGKVIV 150
Query: 114 ILCSPSNPTGSVYPKNLLDEIARIV----AKHPRLLVLSDEIYEHIIYAPATHTS-FASL 168
IL P+NPTG + I + +++ + D+ Y + Y + S FA+L
Sbjct: 151 ILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAAL 210
Query: 169 PGMWERTLTV--NGFSKAFAMTGWRLGYI 195
+ L V +G +K + G+R+G+I
Sbjct: 211 ANLHSNILAVKLDGATKEEFVWGFRVGFI 239
|
Length = 388 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 18/121 (14%)
Query: 36 PDQILVSNGAKQSI---LQAVLAVCSPGDEVII-----PAPF--WVSYPEMARIADATPV 85
++I+ ++G ++I ++ PGDE+++ A W E+A+ AT
Sbjct: 61 DEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQ---ELAKRTGATVR 117
Query: 86 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 145
++P + N LLD LE LT +++L+ + SN TG+V P ++EI ++ ++ L+
Sbjct: 118 VIP--VDPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNP---VEEIGKLAHEYGALV 172
Query: 146 V 146
V
Sbjct: 173 V 173
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 40 LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL-PTRISENFL-- 96
+ NG S +LAVC PGD+++I S ++ A PV L P R +
Sbjct: 79 FLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAG 138
Query: 97 -LDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150
+ P+ + L E ++ ++ +P G Y L +I A H L VL DE
Sbjct: 139 GIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVE-EAHHRGLPVLVDE 190
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294 |
| >gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 29/152 (19%)
Query: 41 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI--ADATPVILPTRISENFLL- 97
V NG + + AV +PGD+V++ + A ATPV L + + +
Sbjct: 91 VVNGTSTANKAVINAVLTPGDKVLVDRN--CHKSIHHGLILAGATPVYLEPSRNPLYGII 148
Query: 98 ---DPKVLESKLTEK---SRLLILCSPSNPT--GSVY-PKNLLDEIARIVAK------HP 142
+ + L +L ++ +NPT G Y + +++ + A HP
Sbjct: 149 GGIPLETFKEALLAHPDAEKLAVI---TNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHP 205
Query: 143 RLLVLSDEIYEH------IIYAPATHTSFASL 168
S + E +TH A+L
Sbjct: 206 AHFDFSPMLPESALNGGADFVTQSTHKLLAAL 237
|
Length = 557 |
| >gnl|CDD|183263 PRK11658, PRK11658, UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 44 GAKQSILQAVLAVCS---------------PGDEVIIPAPFWVSYPEMARIADATPVILP 88
G + +I AV S PGDEVI P+ WVS M + ATPV++
Sbjct: 47 GNQHAI-----AVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVD 101
Query: 89 TRISENFLLDPKVLESKLTEKSRLLI 114
+ ++ P+ +E+ +T +++ +I
Sbjct: 102 VD-RDTLMVTPEAIEAAITPRTKAII 126
|
Length = 379 |
| >gnl|CDD|201705 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 19/138 (13%)
Query: 41 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL-PTRISENFL--- 96
V NG + +AVC+PGD V+I S ++ ATPV L PTR + +
Sbjct: 87 VVNGTSGANKTVGMAVCTPGDTVLIDRNCHKSIHHALMMSGATPVYLEPTRNAYGIIGGI 146
Query: 97 ----LDPKVLESKLTE--KSRLLILCSPSNPT--GSVYPKNLLDEIARIVAKHPRLLVLS 148
+ ++ L E ++ L +N T G++Y EI H +L
Sbjct: 147 PLHEFQEETIKEALAEVPPAKGPRLAVITNGTYDGTIYN---AKEIVDT-LGHLSDYILF 202
Query: 149 DE---IYEHIIYAPATHT 163
D YE I A +
Sbjct: 203 DSAWVGYEQFIPIYADAS 220
|
Length = 417 |
| >gnl|CDD|215360 PLN02672, PLN02672, methionine S-methyltransferase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 53 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL 112
VL G + PA +Y A+ A +PT+ S+ F L K L S L +
Sbjct: 771 VLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKP 830
Query: 113 LILCS-PS-NPTGSVYPKNLLDEIARIVAK 140
+ S P+ NPTG +Y + ++EI + AK
Sbjct: 831 WVYISGPTINPTGLLYSNSEIEEILSVCAK 860
|
Length = 1082 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.98 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.97 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.97 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.97 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| PLN02721 | 353 | threonine aldolase | 99.97 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.97 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.97 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.97 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.97 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.97 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.97 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.97 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.97 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.97 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.97 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.97 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.97 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.97 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.97 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.97 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.97 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.97 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.97 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.97 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.97 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.97 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.96 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.96 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.96 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.96 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.96 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.96 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.96 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.96 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.96 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.96 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.96 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.96 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.96 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.96 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.96 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.95 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.95 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.95 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.95 | |
| PLN02651 | 364 | cysteine desulfurase | 99.95 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.95 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.95 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.95 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.95 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.95 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.95 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.95 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.95 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.95 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.95 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.95 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.95 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.94 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.94 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.94 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.94 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.94 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.94 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.94 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.94 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.94 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.94 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.94 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.94 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.94 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.94 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.94 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.94 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.94 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.94 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.94 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.94 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.93 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.93 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.93 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.93 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.93 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.93 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.93 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.93 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.93 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.93 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.93 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.93 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.93 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.92 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.92 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.92 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.92 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.92 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.92 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.92 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.92 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.92 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.91 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.91 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.91 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.91 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.91 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.91 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.91 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.91 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.91 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.91 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.91 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.91 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.91 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.91 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.9 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.9 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.9 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.9 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.9 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.9 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.9 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.9 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.89 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.89 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.89 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.89 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.89 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.89 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.89 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.89 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.89 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.88 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.88 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.88 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.88 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.88 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.88 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.88 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.88 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.88 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.87 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.87 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.87 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.87 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.87 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.87 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.87 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.86 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.86 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.86 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.86 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.86 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.86 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.86 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.86 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.86 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.86 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.86 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.85 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.85 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.85 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.85 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.85 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.85 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.84 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.84 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.84 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.84 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.84 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.84 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.84 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.84 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.84 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.84 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.84 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.84 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.84 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.84 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.83 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.83 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.83 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.83 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.83 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.83 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.83 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.83 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.83 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.83 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.82 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.82 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.82 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.82 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.82 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.82 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.82 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.82 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.82 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.81 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.81 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.81 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.81 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.81 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.8 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.8 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.8 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.8 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.8 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.8 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.79 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.79 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.79 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.78 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.78 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.78 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.78 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.78 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.77 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.76 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.76 | |
| PLN02263 | 470 | serine decarboxylase | 99.76 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.75 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.75 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.75 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.74 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.74 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.73 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.73 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.73 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.73 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.72 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.71 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.71 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.7 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.69 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.69 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.68 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.67 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.66 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.65 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.65 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.62 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.6 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.58 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.55 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.52 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.52 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.51 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 99.49 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.48 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.43 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.39 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.38 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.36 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.28 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.28 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.17 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 99.07 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 99.0 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.99 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.98 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.92 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 98.88 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.7 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 98.67 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.67 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.38 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.11 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.22 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 96.34 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 93.02 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 83.25 | |
| PRK10595 | 164 | SOS cell division inhibitor; Provisional | 82.8 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 80.35 |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-54 Score=388.91 Aligned_cols=325 Identities=40% Similarity=0.690 Sum_probs=300.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCc-EEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~-i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
+|++..|.++|| +++|+++. +++..+.+++ |++|+|+++|+..++.+++++||+|++++|.|..|....+..
T Consensus 60 ~Y~~~~G~~~LR------eaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~ 133 (393)
T COG0436 60 HYTPSAGIPELR------EAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLA 133 (393)
T ss_pred CCCCCCCCHHHH------HHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhc
Confidence 677999999999 99999999 8898888876 999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCC-CCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 81 DATPVILPTRIS-ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 81 g~~v~~i~~~~~-~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
|.+++.+++..+ .+|.+|+++|++++++++++|++++||||||.+++.+++++|+++|+++ |++||.||+|.++.|++
T Consensus 134 gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~-~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 134 GGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREH-DIIIISDEIYEELVYDG 212 (393)
T ss_pred CCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHc-CeEEEEehhhhhcccCC
Confidence 999999998655 4899999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 238 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (352)
..+.++.......++.+.+.|+||.++++|+|+||++++ +++++.+.+.+.....+++.+.|.++.++|+.... ....
T Consensus 213 ~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~ 291 (393)
T COG0436 213 AEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVV 291 (393)
T ss_pred CCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-hHHH
Confidence 766777776655688999999999999999999999999 88999988888888889999999999999998432 4577
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCceecC-CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC
Q 018665 239 SKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~ 317 (352)
+..++.+++|++.+.+.|.+++|+.+.. |.+++|+|++++... ++.+++++|++++||.+.||..|+.
T Consensus 292 ~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~~-----------d~~~f~~~Ll~~~gV~v~PG~~Fg~ 360 (393)
T COG0436 292 EEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELL-----------DSEEFAKKLLEEAGVAVVPGSGFGE 360 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCCC-----------CHHHHHHHHHHhCCEEEecccccCC
Confidence 8888999999999999999998899998 789999999998752 8999999999999999999999997
Q ss_pred C---CeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 318 D---TCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 318 ~---~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
+ +++|++++.++++++++++++++.++.+
T Consensus 361 ~~g~~~vRis~~~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 361 PPGEGYVRLSLATSEETLEEALRRLARFLAEY 392 (393)
T ss_pred CCCCCeEEEEEecCHHHHHHHHHHHHHHHHhc
Confidence 5 7999999998899999999999998764
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=363.56 Aligned_cols=326 Identities=23% Similarity=0.358 Sum_probs=287.6
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|++..|.+++| +.+++++. .+|+++++ ++|++|+|+++++..++.+++++||+|++++|+|..+...++.
T Consensus 72 ~~Y~~~~G~~~LR------~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~ 145 (405)
T PRK06207 72 QAYTEYRGDADIR------ELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEF 145 (405)
T ss_pred ccCCCCCCCHHHH------HHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHH
Confidence 3588889999999 99999999 77988888 8999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccC---CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc
Q 018665 80 ADATPVILPTRI---SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 156 (352)
Q Consensus 80 ~g~~v~~i~~~~---~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~ 156 (352)
.|.+++.++++. +.++.+|+++|+++++++++++++++||||||.+++.+++++|+++|+++ |++||+||+|+++.
T Consensus 146 ~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~-~~~iI~De~Y~~~~ 224 (405)
T PRK06207 146 FEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRY-GATVIVDQLYSRLL 224 (405)
T ss_pred cCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccccc
Confidence 999999999862 34678999999999988899999999999999999999999999999999 99999999999998
Q ss_pred cCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChH
Q 018665 157 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
+++....++..+..+++++++++|+||.++++|+|+||+++++++++.+......+..+.+.+.|.++..+++. ...
T Consensus 225 ~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~---~~~ 301 (405)
T PRK06207 225 YDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSE---PDG 301 (405)
T ss_pred cCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhC---cHH
Confidence 87754455555444468999999999999999999999999999999998887777777888999999999975 246
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
++++..+.++++++.+.+.|++++++.+..|++|+|+|++++... .+..++++.|++++||.+.||..|+
T Consensus 302 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~----------~~~~~~~~~l~~~~gV~v~pG~~F~ 371 (405)
T PRK06207 302 WMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLA----------VSLHDFVKILRLQAGVIVTPGTEFS 371 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccC----------CCHHHHHHHHHHhcCEEEeCchHhC
Confidence 677888888889999999998887888888899999999998521 1678899998866799999999886
Q ss_pred C--CCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 317 D--DTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 317 ~--~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
. ++++||+++.+.+++++++++|++++++++
T Consensus 372 ~~~~~~~Ris~~~~~~~l~~al~rl~~~l~~~~ 404 (405)
T PRK06207 372 PHTADSIRLNFSQDHAAAVAAAERIAQLIERYR 404 (405)
T ss_pred CCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 4 579999999988999999999999998764
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-49 Score=359.16 Aligned_cols=315 Identities=26% Similarity=0.498 Sum_probs=282.5
Q ss_pred CCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCe
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT 83 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~ 83 (352)
++.|..++| +++|++++ ++|+++++ ++|++|+|+++++..++.+++++||.|++++|+|..+...++..|.+
T Consensus 67 ~~~G~~~lr------~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~ 140 (399)
T PRK07681 67 TLSGIQEFH------EAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGAT 140 (399)
T ss_pred CCCCcHHHH------HHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCE
Confidence 358999999 99999999 88998898 89999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
++.+++++++++.+|++++++.+.++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++.+++....
T Consensus 141 ~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~ 219 (399)
T PRK07681 141 SYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKH-NIIVVHDFAYAEFYFDGNKPI 219 (399)
T ss_pred EEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHc-CeEEEEeccchhheeCCCCCC
Confidence 9999998766788999999998888899999999999999999999999999999999 999999999999888765555
Q ss_pred ccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
++..+...++++++++|+||.+|++|+|+||+++++++++.+.........+++.+.|.++..+++. ...++++.++
T Consensus 220 ~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~ 296 (399)
T PRK07681 220 SFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRN---GAAFCEKNRG 296 (399)
T ss_pred ChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---cHHHHHHHHH
Confidence 6666554457899999999999999999999999999999998876666677999999999999986 3577888889
Q ss_pred HHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--CCeE
Q 018665 244 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCI 321 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~~~i 321 (352)
.++++++.+.+.|++. |+.+..+.+|+|+|+++++.. ++.+++++|++++||.+.||..|+. ++++
T Consensus 297 ~~~~~~~~l~~~L~~~-g~~~~~p~~g~f~~~~l~~~~-----------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~i 364 (399)
T PRK07681 297 IYQERRDTLVDGFRTF-GWNVDKPAGSMFVWAEIPKGW-----------TSLSFAYALMDRANVVVTPGHAFGPHGEGFV 364 (399)
T ss_pred HHHHHHHHHHHHHHHC-CCcccCCCeeeEEEEECCCCC-----------CHHHHHHHHHHhCCEEEeCChhhCcCCCCeE
Confidence 9999999999999987 888878899999999998642 6788999998867999999988864 4799
Q ss_pred EEEeecCHHHHHHHHHHHHHH
Q 018665 322 RISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~ 342 (352)
||+++.+++++++++++|+++
T Consensus 365 Ris~~~~~~~~~~~l~~l~~~ 385 (399)
T PRK07681 365 RIALVQDEEVLQQAVENIRNS 385 (399)
T ss_pred EEEecCCHHHHHHHHHHHHHh
Confidence 999998889999999999883
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=356.06 Aligned_cols=320 Identities=32% Similarity=0.595 Sum_probs=284.0
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|+++.|.+++| +++|+++. ++++.+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..
T Consensus 60 ~~Y~~~~G~~~lr------~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~ 133 (384)
T PRK06348 60 TRYTDSGGDVELI------EEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMV 133 (384)
T ss_pred CCCCCCCCcHHHH------HHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHc
Confidence 4688999999999 99999998 8899899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.+++.+++++.+|++.+++.++++++++++++||||||.+++.+++++|+++|+++ +++||+||+|.++.+++.
T Consensus 134 g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~ 212 (384)
T PRK06348 134 GGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEY-DLFIISDEVYDGFSFYED 212 (384)
T ss_pred CCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHC-CeEEEEecccccceeCCC
Confidence 9999999886556778999999999988899999999999999999999999999999999 999999999999887642
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
..++..+....+++++++||||.+|++|+|+||+++++++++.+........++++.+.|.++..++.. .+.+.++
T Consensus 213 -~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~ 288 (384)
T PRK06348 213 -FVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKH---RDTIVPL 288 (384)
T ss_pred -ccchhhcCCCcCcEEEEecchhccCCccccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhC---cHHHHHH
Confidence 345555543357899999999999999999999999999999988877766677899999999999975 3677888
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--C
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D 318 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~ 318 (352)
+++.++++++.+.+.|++++++.+..+++|+++|++++... .+..++++.+++++||.+.||+.|+. +
T Consensus 289 ~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~~~~~~~~----------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~ 358 (384)
T PRK06348 289 IKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINIKKTG----------LSSVEFCEKLLKEAHVLVIPGKAFGESGE 358 (384)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEecccCC----------CCHHHHHHHHHHhCCEEEcCchhhccCCC
Confidence 99999999999999999887888888899999999997421 16788999888777999999998865 4
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHH
Q 018665 319 TCIRISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~ 342 (352)
+++||+++.+.+++++++++|++.
T Consensus 359 ~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 359 GYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred CeEEEEecCCHHHHHHHHHHHHhh
Confidence 799999988889999999998753
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-49 Score=357.77 Aligned_cols=321 Identities=23% Similarity=0.389 Sum_probs=277.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|+++.|..++| +++|+++. ++|+.++++ +|++|+|+++++..++.+++++||+|++++|+|..+...++..
T Consensus 63 ~Y~~~~G~~~lr------~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~ 136 (388)
T PRK07366 63 GYLLFHGTLDFR------EAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLA 136 (388)
T ss_pred CCCCCCCCHHHH------HHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc
Confidence 488889999999 99999999 789888998 6999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++.++++..|++++++.+.++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++.+++.
T Consensus 137 g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~ 215 (388)
T PRK07366 137 GGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQH-DLVLVHDFPYVDLVFDGE 215 (388)
T ss_pred CCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CeEEEEecchhhcccCCC
Confidence 9999999998666788899999888877889999999999999999999999999999999 999999999999988664
Q ss_pred C-ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 161 T-HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 161 ~-~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
. .+++..+....+++++++||||.+|++|+|+||+++++++++.+......+..+.++..+.++.+++.. .+++++
T Consensus 216 ~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~---~~~~l~ 292 (388)
T PRK07366 216 VEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTG---PQATVQ 292 (388)
T ss_pred CCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---cHHHHH
Confidence 3 445555544446789999999999999999999999999999998877665555544444455555543 268899
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
+.++.++++++.+.+.|+++ ++.+..|++|+|+|+++++..+ .+..++++.++++.||.+.||..|+.
T Consensus 293 ~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~~~~~~~---------~~~~~~~~~l~~~~gv~v~pg~~f~~~~ 362 (388)
T PRK07366 293 QTVQIFRQRRDAFINALHQI-GWPVPLPEATMYVWAKLPEPWQ---------GNSVEFCTQLVAQTGVAASPGSGFGKSG 362 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCcccCCCeeEEEEEECCcccC---------CCHHHHHHHHHHhCCEEEeCchHhCcCC
Confidence 99999999999999999988 7877788999999999986321 14678888887677999999998864
Q ss_pred CCeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 318 DTCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 318 ~~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
++++||+++.+++++++++++|++++
T Consensus 363 ~~~iRi~~~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 363 EGYVRFALVHDPDILEEAVERIAAFL 388 (388)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHhC
Confidence 47999999988899999999998753
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=356.09 Aligned_cols=319 Identities=27% Similarity=0.476 Sum_probs=279.8
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|+++.|..++| +++|+++. ++|.+++++ +|++|+|+++++..++.+++++||+|++++|+|..+...++.
T Consensus 64 ~~Y~~~~g~~~lr------~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~ 137 (389)
T PRK08068 64 HKYSPFRGYPFLK------EAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVAL 137 (389)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHh
Confidence 4688899999999 99999999 788888888 899999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.++++.+.++.+|++++++.++++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.++.+++
T Consensus 138 ~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~-~~~ii~Deay~~~~~~~ 216 (389)
T PRK08068 138 ARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKH-NIGVVHDFAYGAIGFDG 216 (389)
T ss_pred cCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHc-CeEEEEehhhhhhccCC
Confidence 99999999997656788899999999988899999999999999999999999999999999 99999999999887765
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....++.......++++++.|+||.+|++|+|+||+++++++++.+......+..+.+++.|.++..++.. ...+++
T Consensus 217 ~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~ 293 (389)
T PRK08068 217 QKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLS---DQSCVA 293 (389)
T ss_pred CCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhC---cHHHHH
Confidence 43444444333356889999999999999999999999999999998877666656666678888888764 357788
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
..++.++++++.+.+.|+++ |+.+..+.+|+|+|+++++.. ++.++.+.|++++||.+.||..|+.
T Consensus 294 ~~~~~~~~~r~~~~~~L~~~-g~~~~~~~g~~~~~v~~~~~~-----------~~~~~~~~l~~~~gi~v~pg~~f~~~~ 361 (389)
T PRK08068 294 ELVARYESRRNAFISACREI-GWEVDAPKGSFFAWMPVPKGY-----------TSEQFADLLLEKAHVAVAPGNGFGEHG 361 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCcccCCCeeEEEEEECCCCC-----------CHHHHHHHHHHhCCEEEecchHhCccC
Confidence 99999999999999999988 888888889999999998642 6889999998767999999988764
Q ss_pred CCeEEEEeecCHHHHHHHHHHHHHH
Q 018665 318 DTCIRISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 318 ~~~iRi~~~~~~~~l~~~~~~l~~~ 342 (352)
++++||+++.+++.+++++++|+++
T Consensus 362 ~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 362 EGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 5799999998888999999998764
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=356.56 Aligned_cols=321 Identities=30% Similarity=0.575 Sum_probs=284.9
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|+++.|.+++| ++++++++ +++++++++ +|++|+|+++++..++.+++++||+|++++|+|..+...++.
T Consensus 85 ~~Y~~~~G~~~Lr------~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~ 158 (413)
T PLN00175 85 NQYARGFGVPELN------SAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM 158 (413)
T ss_pred CCcCCCCCCHHHH------HHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHH
Confidence 4699999999999 99999999 789888887 799999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.++++.+ ++.+|+++|++.+.++++++++++||||||.+++.+++++|+++|+++ ++++|+||+|.++.+.+
T Consensus 159 ~g~~~~~v~~~~~-~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~l~~~~ 236 (413)
T PLN00175 159 AGAKIKTVTLRPP-DFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKEN-DVLAFTDEVYDKLAFEG 236 (413)
T ss_pred cCCEEEEEECCcc-cCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEecccCccccCC
Confidence 9999999999753 378999999999988899999999999999999999999999999999 99999999999988765
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
. +.++..+....+++++++||||.++++|+|+||+++++++++.+.........+++.+.|.++.++++. .+.+++
T Consensus 237 ~-~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~---~~~~~~ 312 (413)
T PLN00175 237 D-HISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRA---PESYYE 312 (413)
T ss_pred c-ccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC---CHHHHH
Confidence 3 345555554467899999999999999999999999999999998877666778999999999999976 357889
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
+.++.++++++.+.+.|++. |+.+..|++|+|+|++++... ..+..++++.|++++||.+.||..|+.
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~~f~~~~~~~~~---------~~~~~~~~~~ll~~~gV~v~pg~~F~~~~ 382 (413)
T PLN00175 313 ELKRDYSAKKDILVEGLKEV-GFKVYPSSGTYFVMVDHTPFG---------FENDIAFCEYLIEEVGVAAIPPSVFYLNP 382 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEeccccC---------CCCHHHHHHHHHHhCCEEEeCchHhCCCC
Confidence 99999999999999999987 888888999999999975310 014678999998777999999988742
Q ss_pred ---CCeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 318 ---DTCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 318 ---~~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
++++||+++.+++++++++++|+++++
T Consensus 383 ~~~~~~iRls~~~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 383 EDGKNLVRFAFCKDEETLRAAVERMKTKLK 412 (413)
T ss_pred CCCCCEEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999875
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-48 Score=352.09 Aligned_cols=318 Identities=29% Similarity=0.524 Sum_probs=281.8
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|+++.|..++| +.+|++++ +++++++++ +|++|+|+++++..++.+++++||.|++++|+|..+...++.
T Consensus 61 ~~Y~~~~G~~~lr------~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~ 134 (383)
T TIGR03540 61 HRYPSYEGMLAYR------QAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLF 134 (383)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHh
Confidence 4588889999999 99999999 778877776 699999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.++++.++++.+|++++++.+.++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|+++.+.+
T Consensus 135 ~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~l~~~~ 213 (383)
T TIGR03540 135 AGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEY-NIIVCHDNAYSEITFDG 213 (383)
T ss_pred cCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHc-CEEEEEecchhhhccCC
Confidence 99999999997666777899999999888899999999999999999999999999999999 99999999999988866
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....++..+....++++++.|+||.+|++|+|+||+++++++++.+.........+++.+.|.++..+++. ..++++
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~ 290 (383)
T TIGR03540 214 YKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNG---PQDVVK 290 (383)
T ss_pred CCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhC---CHHHHH
Confidence 55566666544346789999999999999999999999999999888776555567788899999999976 368888
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
++++.++++++.+.+.|++. |+.+..+.+|+++|+++++.. ++.++++.|++++||.+.||..|..
T Consensus 291 ~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~ll~~~gi~v~~g~~f~~~~ 358 (383)
T TIGR03540 291 EIRKIYQRRRDLLLEALKKI-GIDVEKPKATFYVWVPVPEGY-----------TSAEFAARLLEETGVVVTPGVGFGEYG 358 (383)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCEecCCCcceEEEEECCCCC-----------CHHHHHHHHHHHCCEEEecchhhCccC
Confidence 99999999999999999998 898888889999999998542 6788999987667999999988864
Q ss_pred CCeEEEEeecCHHHHHHHHHHHHH
Q 018665 318 DTCIRISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 318 ~~~iRi~~~~~~~~l~~~~~~l~~ 341 (352)
++++||+++.+++++++++++|++
T Consensus 359 ~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 359 EGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred CCeEEEEecCCHHHHHHHHHHHhh
Confidence 479999999888999999998865
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=353.17 Aligned_cols=323 Identities=43% Similarity=0.695 Sum_probs=283.7
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|++..|..++| +++|++++ ++|+.++++ +|++|+|+++++..++.+++++||+|++++|+|..+...++.
T Consensus 51 ~~Y~~~~g~~~lr------~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~ 124 (378)
T PRK07682 51 TSYTANAGLLELR------QEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTL 124 (378)
T ss_pred CCCCCCCCcHHHH------HHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHHHH
Confidence 3588889999999 99999999 778888775 899999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.++++.++++.+|+++++++++++++++++++||||||.+++.+++++|+++|+++ ++++|+||+|.++.+++
T Consensus 125 ~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~ 203 (378)
T PRK07682 125 AGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKH-DLIVLSDEIYAELTYDE 203 (378)
T ss_pred cCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHc-CcEEEEehhhhhcccCC
Confidence 99999999986555678999999999988899999999999999999999999999999999 99999999999988865
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
. ..++..+....++++++.|+||.+|++|+|+||+++++++++.+.........+++.+.|.++..+++. ...+++
T Consensus 204 ~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~ 279 (378)
T PRK07682 204 A-YTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRA---GNDDVI 279 (378)
T ss_pred C-CCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhC---ChHHHH
Confidence 3 334444444357899999999999999999999999999999988776555567889999999999976 245688
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
++++.++++++.+.+.|+++ |+.+..|++++++|+.++... .+..++++.|+++.||.+.||..|+.
T Consensus 280 ~~~~~~~~~~~~~~~~L~~~-~~~~~~p~g~~~~~~~~~~~~----------~~~~~~~~~ll~~~gv~v~pg~~f~~~~ 348 (378)
T PRK07682 280 RMRDSYRKRRNFFVTSFNEI-GLTCHVPGGAFYAFPSISSTG----------LSSEEFAEQLLLEEKVAVVPGSVFGESG 348 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCccCCCCeeEEEEEeccCCC----------CCHHHHHHHHHHhCCEEEcCchhhCcCC
Confidence 88999999999999999998 888888999999999875321 16788998887666999999988864
Q ss_pred CCeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 318 DTCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 318 ~~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
++++||+++.+++++++++++|+++++++
T Consensus 349 ~~~iRis~~~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 349 EGFIRCSYATSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 58999999998899999999999998765
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-48 Score=351.34 Aligned_cols=317 Identities=31% Similarity=0.564 Sum_probs=280.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|++..|.+++| ++++++++ ++|+.++++ +|++|+|+++++..++.+++++||+|++++|+|..+...++..
T Consensus 64 ~Y~~~~G~~~lr------~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~ 137 (385)
T PRK09276 64 QYPSYEGMLEFR------KAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFA 137 (385)
T ss_pred CCCCCCCcHHHH------HHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHc
Confidence 588888999999 99999999 778888776 5999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++.+.++.+|++++++.+.++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.++.+++.
T Consensus 138 g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~ 216 (385)
T PRK09276 138 GGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKY-DIIVCHDAAYSEIAYDGY 216 (385)
T ss_pred CCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC-CcEEEEecchhheecCCC
Confidence 9999999997666778899999998888899999999999999999999999999999999 999999999999887765
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
...++..++...+++++++|+||.+|++|+|+||+++++++++.+.+.......+.+.+.|.++..+++. ...++++
T Consensus 217 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~ 293 (385)
T PRK09276 217 KPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG---PQEVVEE 293 (385)
T ss_pred CCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcC---cHHHHHH
Confidence 5566666554457789999999999999999999999999999998876655566777889999999875 3678899
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--C
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D 318 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~ 318 (352)
.++.++++++.+.+.|+++ ++.+..+.+|+++|+++++.. ++.+++++|++++||.+.||..|+. +
T Consensus 294 ~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~v~~~~~~-----------~~~~l~~~ll~~~gi~v~~g~~f~~~~~ 361 (385)
T PRK09276 294 LRKIYQERRDILVEGLRKL-GLEVEPPKATFYVWAPVPKGY-----------TSAEFATLLLDKAGVVVTPGNGFGEYGE 361 (385)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEECCCCC-----------CHHHHHHHHHHhCCEEECCchhhCCCCC
Confidence 9999999999999999988 888888889999999998643 6788999988767999999988764 4
Q ss_pred CeEEEEeecCHHHHHHHHHHHHH
Q 018665 319 TCIRISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~ 341 (352)
+++||+++.+++++.+++++|++
T Consensus 362 ~~~Ris~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 362 GYFRIALTVPDERIEEAVERIKK 384 (385)
T ss_pred CeEEEEeCCCHHHHHHHHHHHhh
Confidence 79999999888999999998864
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=350.44 Aligned_cols=326 Identities=26% Similarity=0.457 Sum_probs=280.1
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|+++.|..++| +.+|+++. ++++.+.++ +|++|+|+++++..++.+++++||.|++++|+|..+...++.
T Consensus 65 ~~Y~~~~G~~~lR------~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~ 138 (403)
T PRK08636 65 HGYSVSKGIYKLR------LAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFIL 138 (403)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHh
Confidence 3588889999999 99999998 779888887 799999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHH----Hhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 80 ADATPVILPTRISENFLLDPKVL----ESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l----~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
.|.+++.++++.++++.+|++.+ +++++ .+++++++++||||||.++|.+++++|+++|+++ |++||+||+|
T Consensus 139 ~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y 217 (403)
T PRK08636 139 AGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKE-RFYIISDIAY 217 (403)
T ss_pred cCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEeccc
Confidence 99999999986555677887754 55553 4788999999999999999999999999999999 9999999999
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccC
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
+++.+++...+++..++...+++++++|+||.+|++|+|+||+++++++++.+.........+++++.|.++..+++.
T Consensus 218 ~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~-- 295 (403)
T PRK08636 218 ADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDG-- 295 (403)
T ss_pred hhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhC--
Confidence 998887655566666654346778899999999999999999999999999988776554566778888888777753
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
...+++++++.++++++.+.+.|++. ++.+..+.+|+|+|+++|+... ..+..++++.+++++||.+.||
T Consensus 296 -~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~g~~~~~~l~~~~~--------~~~~~~l~~~ll~~~gV~v~pg 365 (403)
T PRK08636 296 -DQSCVEEIRETYRKRRDVLIESFANA-GWELQKPRASMFVWAKIPEPAR--------HLGSLEFSKQLLTEAKVAVSPG 365 (403)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCcceEEEEECCCccC--------CCCHHHHHHHHHHhCCEEEecc
Confidence 26788899999999999999999987 7888889999999999986320 0146788888776679999999
Q ss_pred CCCCC--CCeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 313 DAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 313 ~~~~~--~~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
..|+. ++++||+++.+++++++++++|+++++.+
T Consensus 366 ~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~~l~~~ 401 (403)
T PRK08636 366 IGFGEYGDEYVRIALIENENRIRQAARNIKKFLKEL 401 (403)
T ss_pred hhhCcCCCCeEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 88864 47999999988899999999999999764
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=354.37 Aligned_cols=331 Identities=21% Similarity=0.371 Sum_probs=280.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|+++.|..++| +++|++++ ++++.+++++|++|+|+++++..++.+++++||+|++++|+|..|...++..|
T Consensus 103 ~Y~~~~G~~~lR------~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g 176 (462)
T PLN02187 103 SYGPGAGILPAR------RAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSG 176 (462)
T ss_pred CCCCCCChHHHH------HHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcC
Confidence 588999999999 99999999 88888999999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.+++.+++++.+|++.++++++++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++.|.+..
T Consensus 177 ~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~-~i~iI~DE~Y~~l~f~~~~ 255 (462)
T PLN02187 177 LEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKL-GIMVISDEVYDRTIFGDNP 255 (462)
T ss_pred CEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHC-CCEEEEeccccccccCCCC
Confidence 999999987667789999999999988899999999999999999999999999999999 9999999999998886654
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcC-hh----HHHHHHhhhhcccc--CCChHHHHHHHHHhcccCCC
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KH----FVAACNKIQSQFTS--GASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 234 (352)
..++..+.. ..++++++|+||.++++|+|+||++++ ++ +++.+......+.. +++.+.|.++.++++.. .
T Consensus 256 ~~s~~~~~~-~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~--~ 332 (462)
T PLN02187 256 FVSMGKFAS-IVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKA--D 332 (462)
T ss_pred ceeHHHhcc-CCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcC--c
Confidence 445555443 257899999999999999999999973 33 33455555544433 45899999999999742 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCce-ecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
.+++++.++.++++++.+.+.|+++++.. +..|++|+|+|++++.... .+ ..+..+++.+++++.||.+.||.
T Consensus 333 ~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~---~~---~~~~~~~~~~ll~~~gV~v~pG~ 406 (462)
T PLN02187 333 KNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLM---DN---IKDDIDFCVKLAREENLVFLPGD 406 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhC---CC---CCCHHHHHHHHHhhCCEEEECcc
Confidence 58899999999999999999999885544 3467889999998753100 00 01455777777667799999999
Q ss_pred CCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhCCC
Q 018665 314 AFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 314 ~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
.|+.++++||+++.+++++++++++|++++++....
T Consensus 407 ~fg~~~~iRis~~~~~e~l~~al~rL~~~l~~~~~~ 442 (462)
T PLN02187 407 ALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442 (462)
T ss_pred ccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhhhc
Confidence 998889999999999999999999999999877653
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=349.46 Aligned_cols=320 Identities=27% Similarity=0.488 Sum_probs=280.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|+++.|.+++| +++|++++ +++.+++++ +|++|+|+++++..++.+++++||+|++++|+|..+...++.
T Consensus 67 ~~Y~~~~G~~~lr------~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~ 140 (394)
T PRK05942 67 HGYPPFEGTASFR------QAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLI 140 (394)
T ss_pred ccCCCCCCCHHHH------HHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHH
Confidence 3588889999999 99999999 778888887 589999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.++++.++++.+|++++++.++++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.++.+++
T Consensus 141 ~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~ 219 (394)
T PRK05942 141 AGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKY-EIMLVHDLCYAELAFDG 219 (394)
T ss_pred cCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHc-CeEEEEeccchhhccCC
Confidence 99999999998666788999999999988999999999999999999999999999999999 99999999999988766
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....++..+....+++++++||||.+|++|+|+||+++++++++.+.........+++++.|.++..+++. ..++++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~ 296 (394)
T PRK05942 220 YQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQL---PDSYLQ 296 (394)
T ss_pred CCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---cHHHHH
Confidence 54455555543345679999999999999999999999999999998876655667888999999999974 367888
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
+.++.++++++.+.+.|++. ++.+..+++|+|+|++++... +..+++.++++++||.+.||..|+.
T Consensus 297 ~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~~~~~~~~-----------~~~~~~~~~l~~~gV~v~~g~~f~~~~ 364 (394)
T PRK05942 297 QVQERYRTRRDFLIQGLGEL-GWNIPPTKATMYLWVPCPVGM-----------GSTDFALNVLQKTGVVVTPGNAFGEGG 364 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCeecCCCeeeEEEEECCCCC-----------CHHHHHHHHHHHCCEEEeCChhhCcCC
Confidence 89999999999999999887 888888889999999998642 5677888777777999999988853
Q ss_pred CCeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 318 DTCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 318 ~~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
++++||+++.+.+.+.+++++|.++-
T Consensus 365 ~~~iRis~~~~~~~l~~~l~~l~~~~ 390 (394)
T PRK05942 365 EGYVRISLIADCDRLGEALDRLKQAG 390 (394)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHhh
Confidence 57999999887788999998887754
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=347.68 Aligned_cols=335 Identities=41% Similarity=0.716 Sum_probs=289.1
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|.++.|.+++| +.+++++. ++|..+.+++|++|+|+++++..++.+++++||.|++++|+|..|...+...
T Consensus 64 ~~Y~~~~G~~~lr------~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~ 137 (402)
T PRK06107 64 TKYTLVNGTPALR------KAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLAN 137 (402)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHc
Confidence 3588999999999 99999999 7788888999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
+..++.++++.++++.+|++++++.++++++++++++|+||||.+++.+++++|+++|++++++++|+||+|+++.+.+.
T Consensus 138 ~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~ 217 (402)
T PRK06107 138 DGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDE 217 (402)
T ss_pred CCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCC
Confidence 99998998875566789999999999888999999999999999999999999999999843899999999998877665
Q ss_pred CccccccCC-CCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 161 THTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 161 ~~~~~~~~~-~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
..+++.... ...+++++++|+||.+|++|+|+||+++++++++.+.........+++.+.|.++..+++. ...+++
T Consensus 218 ~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~ 294 (402)
T PRK06107 218 PTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNG---DQSFVT 294 (402)
T ss_pred CCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcC---ChHHHH
Confidence 445555543 2246899999999999999999999999999999999887777778999999999999975 257888
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCc-ccCCCCCCChHHHHHHHHHccCEEeccCCCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE-AEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 318 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~ 318 (352)
+.++.++++++.+.+.|++++|+++..+++|+++|++++...+.. ..+. ...+..++++.+++++||.+.||..|+.+
T Consensus 295 ~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~ 373 (402)
T PRK06107 295 ESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGK-VLETDQDVVLYLLDSAGVAVVQGTAYGLS 373 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEeeeccccccccccccc-CCCCHHHHHHHHHHhCCEEEeCccccCCC
Confidence 999999999999999999887889888999999999885321100 0000 00145678888887789999999999888
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 319 TCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
+++||+++.++|++++++++|++.++++
T Consensus 374 ~~iRis~~~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 374 PYFRLSIATSLETLEEACARIERAVAAL 401 (402)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998765
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=348.64 Aligned_cols=331 Identities=20% Similarity=0.345 Sum_probs=276.3
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|+++.|..++| +++|+++. ++|+.+++++|++|+|+++++..++.+++++||.|++++|+|..+...++..
T Consensus 68 ~~Y~~~~G~~~lr------~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~ 141 (409)
T PLN00143 68 NSYAPTGGILPAR------RAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFH 141 (409)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHc
Confidence 3588999999999 99999999 7888899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.+++..+.++.+|+++|+++++++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++.+++.
T Consensus 142 g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~ 220 (409)
T PLN00143 142 HLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKL-GILVIADEVYGHIVFGSK 220 (409)
T ss_pred CCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHc-CCeEEEEccccccccCCC
Confidence 9999999986556788999999999888899999999999999999999999999999999 999999999999888654
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcC-h-hHH------HHHHhhhhccccCCChHHHHHHHHHhcccC
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-K-HFV------AACNKIQSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
...++..+.. .+++++++|+||.++++|+|+||++++ + .++ +.+.+.... ...++.+.|.++.++++..
T Consensus 221 ~~~~~~~~~~-~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~- 297 (409)
T PLN00143 221 PFVPMGLFAS-IVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNP-APFPPTFIQAAIPEILEKT- 297 (409)
T ss_pred CCcchhhhcc-cCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhcC-
Confidence 3334443332 468999999999999999999999983 3 332 333333222 2235788999999998742
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCcee-cCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~ 311 (352)
...++++.++.++++++.+.+.|+++++... ..|++|+|+|++++.... .+ ..+..+++..++++.||.+.|
T Consensus 298 -~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~---~~---~~~~~~~~~~ll~~~gV~v~p 370 (409)
T PLN00143 298 -TEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLL---ED---IEDDMEFCLKLAKEESLIILP 370 (409)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhc---CC---CCCHHHHHHHHHHhCCEEEeC
Confidence 2578889999999999999999988754443 367899999999974200 00 014667777776667999999
Q ss_pred CCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhCCC
Q 018665 312 GDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 312 g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
|..|+.++++||+++.+++++++++++|+++++++.+.
T Consensus 371 g~~f~~~~~iRi~~~~~~~~l~~al~rl~~~l~~~~~~ 408 (409)
T PLN00143 371 GVTVGLKNWLRITFAVEQSSLEDGLGRLKSFCGRHAKK 408 (409)
T ss_pred ccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHhccC
Confidence 99998889999999998999999999999999877654
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=350.29 Aligned_cols=330 Identities=22% Similarity=0.399 Sum_probs=282.8
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++..|..++| ++++++++ +++..+++++|++|+|+++++..++.++.++||+|++++|+|..|...+...|
T Consensus 89 ~Y~~~~G~~~lr------~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g 162 (430)
T PLN00145 89 SYSTCVGLLPAR------RAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSG 162 (430)
T ss_pred CCCCCccCHHHH------HHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcC
Confidence 588889999999 99999999 88888999999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.+++..+.+|.+|++.+++.++++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.++.|++..
T Consensus 163 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~-~i~ii~De~Y~~~~~~~~~ 241 (430)
T PLN00145 163 LEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKL-GILVIADEVYDHLTFGSKP 241 (430)
T ss_pred CEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEeccchhhccCCCC
Confidence 999999987667889999999999988999999999999999999999999999999999 9999999999998886654
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEc--ChhHHH------HHHhhhhccccCCChHHHHHHHHHhcccCC
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--PKHFVA------ACNKIQSQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
..++..+.. .+++++++|+||.++++|+|+||+++ ++.+++ .+.... ....+++++.|.++..+++..
T Consensus 242 ~~~~~~~~~-~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~-- 317 (430)
T PLN00145 242 FVPMGVFGE-VAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYL-NISTDPATFVQGAIPQIIANT-- 317 (430)
T ss_pred ccchhhhcc-cCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHh-cccCCCCHHHHHHHHHHHhcC--
Confidence 455554443 56899999999999999999999996 334433 333332 223457889999999999752
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceec-CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
..+++++.++.++++++.+.+.|++++++.+. .|++++|+|++++...- .+ ..+..+++..|+++.||.+.||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~---~~---~~~~~~~~~~ll~~~gV~v~pG 391 (430)
T PLN00145 318 KEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCL---SG---IKDDMDFCCKLAKEESVVVLPG 391 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhc---CC---CCCHHHHHHHHHHhCCEEEeCc
Confidence 25788999999999999999999998888764 79999999999863100 00 0156678888887789999999
Q ss_pred CCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhCCC
Q 018665 313 DAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 313 ~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
..|+.++++||+++.+++++++++++|++++.+.+..
T Consensus 392 ~~fg~~~~lRis~~~~~~~l~~al~rl~~~~~~~~~~ 428 (430)
T PLN00145 392 SALGMKNWLRITFAIDPPSLEDGLERLKSFCLRHAKL 428 (430)
T ss_pred cccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhccc
Confidence 9999899999999998899999999999999887653
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-47 Score=347.32 Aligned_cols=326 Identities=26% Similarity=0.439 Sum_probs=280.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|+++.|..++| +++|++++ ++|+.++++ +|++|+|+++++..++.+++++||+|++++|+|..+...++..
T Consensus 63 ~Y~~~~G~~~lr------~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~ 136 (405)
T PRK09148 63 RYSASKGIPGLR------RAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMA 136 (405)
T ss_pred CCCCCCCCHHHH------HHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhc
Confidence 588889999999 99999999 779888887 8999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++.+..+..+++++.+...++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++.+++.
T Consensus 137 g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~~~~~~~ 215 (405)
T PRK09148 137 GGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKH-DIIILSDLAYSEIYFDGN 215 (405)
T ss_pred CCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEeccchhhhcCCC
Confidence 9999999987655554556665554556889999999999999999999999999999999 999999999999887664
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
...++..++...+++++++||||.+|++|+|+||+++++++++.+.+.......+++.+.|.++..+++. .+.++++
T Consensus 216 ~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~---~~~~~~~ 292 (405)
T PRK09148 216 PPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNG---PQDCIAE 292 (405)
T ss_pred CCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhC---cHHHHHH
Confidence 4455555544346788999999999999999999999999999998877766677889999999999975 2578889
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--C
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D 318 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~ 318 (352)
.++.++++++.+.+.|+++ ++.+..|++|+|+|+++|+... ..+..++.+.++++.||.+.||..|+. +
T Consensus 293 ~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~l~~~~~--------~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~ 363 (405)
T PRK09148 293 MRELYKKRRDVLVESFGRA-GWDIPPPAASMFAWAPIPEAFR--------HLGSLEFSKLLVEKADVAVAPGVGFGEHGD 363 (405)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCccCCCCeeEEEEEECCCccC--------CCCHHHHHHHHHHhCCEEEeCchhhCCCCC
Confidence 9999999999999999987 7877788999999999986321 014578888887666999999998864 4
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 319 TCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
+++||+++.+.+++++++++|++++....
T Consensus 364 ~~~Ri~~~~~~~~l~~al~~l~~~l~~~~ 392 (405)
T PRK09148 364 GYVRIALVENEQRIRQAARNIKRFLSSAD 392 (405)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 79999998888999999999999887653
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-47 Score=346.19 Aligned_cols=321 Identities=32% Similarity=0.552 Sum_probs=282.8
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|+++.|.+++| +.+++++. .+|..+++++|++|+|+++++..++.+++++||.|++++|+|..+...++..|
T Consensus 56 ~Y~~~~G~~~lr------~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g 129 (382)
T PRK06108 56 FYTHNLGIPELR------EALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILG 129 (382)
T ss_pred CCCCCCCCHHHH------HHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHCC
Confidence 588889999999 99999999 67888889999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCC-CCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC-C
Q 018665 82 ATPVILPTRIS-ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA-P 159 (352)
Q Consensus 82 ~~v~~i~~~~~-~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~-~ 159 (352)
.+++.++++.+ .++.+|++++++.++++++++++++|+||||.+++.+++++|+++|+++ |+++|+||+|+++.+. +
T Consensus 130 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~y~~~~~~~~ 208 (382)
T PRK06108 130 ARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRH-GLWIVADEVYERLYYAPG 208 (382)
T ss_pred CEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEehhhhhhccCCC
Confidence 99999999753 4577999999999988899999999999999999999999999999999 9999999999998876 3
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....++..+....++++++.|+||.+|++|+|+||+++++++++.+.........+++.+.|.++..++.. ...+++
T Consensus 209 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~ 285 (382)
T PRK06108 209 GRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDE---GEDFVA 285 (382)
T ss_pred CCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhC---ChHHHH
Confidence 33344444433347899999999999989999999999999999988766555567899999999999976 356788
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
+.+++++++++.+.+.|++++++.+..+++|+++|+++++.. +..+++++|++++||.+.||..|+.
T Consensus 286 ~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~~-----------~~~~~~~~ll~~~gV~v~pg~~f~~~~ 354 (382)
T PRK06108 286 ELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGVT-----------DSLALAKRLVDEAGLGLAPGTAFGPGG 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCCC-----------CHHHHHHHHHHhCCEEEeCchhhCCCC
Confidence 899999999999999999888899888899999999987642 6778999988777999999987753
Q ss_pred CCeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 318 DTCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 318 ~~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
++++|++++.+++++++++++|+++++
T Consensus 355 ~~~~Ris~~~~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 355 EGFLRWCFARDPARLDEAVERLRRFLA 381 (382)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 579999999988999999999999875
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=347.90 Aligned_cols=324 Identities=35% Similarity=0.598 Sum_probs=284.7
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|+++.|.+++| +.+|++++ .+|..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..
T Consensus 64 ~~Y~~~~g~~~lr------~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~ 137 (391)
T PRK08361 64 THYTPNAGIPELR------EAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIA 137 (391)
T ss_pred CCCCCCCCcHHHH------HHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHc
Confidence 3588899999999 99999999 6788888999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++.++++.+|++.+++.++++++++++++|+||||.++|.+++++|+++|+++ ++++|+||+|+++.+++.
T Consensus 138 g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~ 216 (391)
T PRK08361 138 EAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDY-NIYILSDEPYEHFLYEGA 216 (391)
T ss_pred CCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc-CeEEEEEcccccceeCCC
Confidence 9999999998766778999999999988899999999999999999999999999999999 999999999999877654
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
...++.... .+++++++|+||.+|++|+|+||+++++++++.+.........+.+.+.|.++..+++.+.. .+++++
T Consensus 217 ~~~~~~~~~--~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~ 293 (391)
T PRK08361 217 KHYPMIKYA--PDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEE 293 (391)
T ss_pred CCCCHhhcC--CCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHH
Confidence 444444332 46889999999999999999999999999999887766555567889999999999986432 356888
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--C
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D 318 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~ 318 (352)
.++.++++++.+.+.|++++++.+..+++|+++|+++++.. .+..++++.|++++||.+.||..|+. +
T Consensus 294 ~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~----------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~ 363 (391)
T PRK08361 294 MRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDETG----------MSSEDFAEWLLEKARVVVIPGTAFGKAGE 363 (391)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCCC----------CCHHHHHHHHHHhCCEEEcCchhhCCCCC
Confidence 99999999999999999888888888999999999997421 16788998888767999999998764 4
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 319 TCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
+++||+++.+++++++++++|++++++
T Consensus 364 ~~iRi~~~~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 364 GYIRISYATSKEKLIEAMERMEKALEE 390 (391)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 799999999888999999999998864
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=348.18 Aligned_cols=317 Identities=24% Similarity=0.387 Sum_probs=275.3
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCC-CCCC-cEEEeCChHHHHHHHHHHhcCC---CCEEEecCCCCCChHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLS-YTPD-QILVSNGAKQSILQAVLAVCSP---GDEVIIPAPFWVSYPE 75 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~-~~~~-~i~~~~g~~~a~~~~~~~l~~~---~~~vl~~~~~~~~~~~ 75 (352)
..|+++.|..++| +.+|+++. ++|+. ++++ +|++|+|+++++..++.+++++ ||.|++++|+|..+..
T Consensus 59 ~~Y~~~~G~~~lr------~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~ 132 (396)
T PRK09147 59 ASYPTTAGLPALR------EAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEG 132 (396)
T ss_pred cCCCCCCCCHHHH------HHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHH
Confidence 4588889999999 99999999 77987 8885 8999999999999999999998 8999999999999999
Q ss_pred HHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 76 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 76 ~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
.++..|.+++.+|++.+++|.+|++.+++.+.++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++
T Consensus 133 ~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~ 211 (396)
T PRK09147 133 AALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRY-GFVIASDECYSEI 211 (396)
T ss_pred HHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHc-CeEEEeecccccc
Confidence 999999999999998667788999999988877899999999999999999999999999999999 9999999999998
Q ss_pred ccCCC-Cccccc----cCC-CCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhc
Q 018665 156 IYAPA-THTSFA----SLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALG 229 (352)
Q Consensus 156 ~~~~~-~~~~~~----~~~-~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 229 (352)
.+++. ...+.. ... ..++++++++|+||.++++|+|+||+++++++++.+.......+.+++.+.|.++.+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~ 291 (396)
T PRK09147 212 YFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWN 291 (396)
T ss_pred ccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhc
Confidence 77653 111211 111 125799999999999999999999999999999998877665566788899998888886
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 230 LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
. .+++.+.++.++++++.+.+.|++. +.+..|++|+|+|+++| . +..++++.|+++.||.+
T Consensus 292 ~----~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~~g~f~~~~~~-~------------~~~~~~~~ll~~~gv~v 352 (396)
T PRK09147 292 D----EAHVRENRALYREKFDAVTPILAPV--LDVQLPDAGFYLWAKVP-G------------DDTEFARRLYADYNVTV 352 (396)
T ss_pred c----hhHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeeEEEEEECC-C------------CHHHHHHHHHHhCCEEE
Confidence 4 6788889999999999999999864 56667899999999998 2 66788888876679999
Q ss_pred ccCCCCCC--------CCeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 310 VPGDAFGD--------DTCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 310 ~~g~~~~~--------~~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
.||..|+. .+++||+++.+++++++++++|++++.
T Consensus 353 ~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 353 LPGSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCR 395 (396)
T ss_pred eCCccccccccCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence 99987752 469999999988999999999998874
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=344.55 Aligned_cols=315 Identities=23% Similarity=0.356 Sum_probs=280.8
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|++..|.+++| +.+|++++ .+++++|++|+|+++++..++.+++++||+|+++.|+|..+...++..|.
T Consensus 57 ~Y~~~~G~~~lr------~~ia~~~~----~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~ 126 (373)
T PRK07324 57 TYGWIEGSPEFK------EAVASLYQ----NVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYDIPESLGA 126 (373)
T ss_pred cCCCCCCCHHHH------HHHHHHhc----CCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCC
Confidence 588999999999 99999985 25679999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++.++++.+|++++++.++++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.++.+.+. .
T Consensus 127 ~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~-~~~ii~De~y~~l~~~~~-~ 204 (373)
T PRK07324 127 EVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSV-DAYVLSDEVYRPLDEDGS-T 204 (373)
T ss_pred EEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEccccccccCCC-C
Confidence 99999998767788999999999988999999999999999999999999999999999 999999999998877543 2
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
.++.. ..++++++.|+||.+|++|+|+||+++++++++.+.+.....+.+.+.+.+.++..+++. ....+++.+
T Consensus 205 ~s~~~---~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~---~~~~l~~~~ 278 (373)
T PRK07324 205 PSIAD---LYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEH---RDAILERNR 278 (373)
T ss_pred CChhh---ccCCEEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcC---HHHHHHHHH
Confidence 33333 246789999999999999999999999999999999888776777888999988888875 356788888
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEE
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 322 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iR 322 (352)
+.++++++.+.+.|++.+++.+..|.+|+++|+.++... +..+++++|++++||.+.||+.|+.++++|
T Consensus 279 ~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~~-----------~~~~~~~~ll~~~gv~v~pg~~F~~~~~iR 347 (373)
T PRK07324 279 KIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVDM-----------PSEDFCLKLLKETGVLLVPGNRFDLEGHVR 347 (373)
T ss_pred HHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCCC-----------CHHHHHHHHHHhcCEEEECccccCCCCeEE
Confidence 999999999999999877888888999998888887532 678899998877799999999998889999
Q ss_pred EEeecCHHHHHHHHHHHHHHHhhh
Q 018665 323 ISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 323 i~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
|+++.+++.+++++++|+++++++
T Consensus 348 is~~~~~~~l~~~l~rl~~~l~~~ 371 (373)
T PRK07324 348 IGYCCDTETLKKGLKKLSEFLREF 371 (373)
T ss_pred EEecCCHHHHHHHHHHHHHHHHhc
Confidence 999998899999999999999865
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-47 Score=346.53 Aligned_cols=325 Identities=27% Similarity=0.436 Sum_probs=281.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCC-CCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLS-YTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~-~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
.|+ +.|..++| +++|+++. ++|+. ++++ +|++|+|+++++..++.+++++||.|+++.|+|..+...++.
T Consensus 77 ~Y~-~~G~~~lr------~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~ 149 (410)
T PRK06290 77 GYA-DNGIQEFK------EAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKY 149 (410)
T ss_pred CCC-CCCcHHHH------HHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHH
Confidence 364 58999999 99999999 77887 8886 799999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.+++++++++.+|++++++.+.++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++.+++
T Consensus 150 ~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~-~~~iI~DEaY~~~~~~~ 228 (410)
T PRK06290 150 YGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKEN-NIIVVQDAAYAALTFDG 228 (410)
T ss_pred cCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEecchhhceeCC
Confidence 99999999998767788899999998888899999999999999999999999999999999 99999999999987765
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
. ..++..+....+++++++|+||.+|++|+|+||+++++++++.+......+..+.+.+.|.++..+++. .++++
T Consensus 229 ~-~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~----~~~~~ 303 (410)
T PRK06290 229 K-PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDH----PEITE 303 (410)
T ss_pred C-CcChhcCCCccccEEEEeechhhcCCchhheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhC----cHHHH
Confidence 2 345555544356789999999999999999999999999999998877666667778899999999986 46788
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
+.++.++++++.+.+.|++. |+.+..+++|+++|+++|+....... ..++.+++++|++++++.+.||+.+ ++
T Consensus 304 ~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~f~l~v~lp~~~~~~~~----~~~~~~~~~~Ll~~~~v~~~p~~~~--~~ 376 (410)
T PRK06290 304 KIREKYSRRLDKLVKILNEV-GFKAEMPGGTFYLYVKAPKGTKSGIK----FENAEEFSQYLIKEKLISTVPWDDA--GH 376 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCeecCCCeeeEEEEECCCccccCCC----CCCHHHHHHHHHHhCCEEEECCccc--cC
Confidence 89999999999999999998 88888889999999999864210000 0167899999998888888888755 47
Q ss_pred eEEEEeec---CHHHHHHHHHHHHHHHhhhC
Q 018665 320 CIRISYAA---SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 320 ~iRi~~~~---~~~~l~~~~~~l~~~~~~~~ 347 (352)
++||+++. ++++-+++++.|++.+.++.
T Consensus 377 ~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~~ 407 (410)
T PRK06290 377 FLRFSVTFEAKDEEEEDRILEEIKRRLSDVE 407 (410)
T ss_pred eEEEEEEcccccccchhHHHHHHHHHHhhcc
Confidence 99999995 77899999999999987653
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=347.92 Aligned_cols=329 Identities=24% Similarity=0.411 Sum_probs=281.6
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hc------CCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-EN------GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP 74 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~------~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~ 74 (352)
..|+++.|..++| +++|++++ ++ +..+++++|++|+|+++++..++.+++++||+|+++.|+|..+.
T Consensus 69 ~~Y~~~~G~~~Lr------~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~ 142 (412)
T PTZ00433 69 NGYPPTVGSPEAR------EAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYE 142 (412)
T ss_pred CCCCCCCCcHHHH------HHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHH
Confidence 4588888999999 99999998 44 46678999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 75 EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 75 ~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
..++..|.+++.++++.+.++.+|++++++.++++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.+
T Consensus 143 ~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~ 221 (412)
T PTZ00433 143 TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEEL-RLPLISDEIYAG 221 (412)
T ss_pred HHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CCeEEEeccccc
Confidence 9999999999999997666788999999999988899999999999999999999999999999999 999999999999
Q ss_pred cccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEc--C----hhHHHHHHhhhhccccCCChHHHHHHHHHh
Q 018665 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--P----KHFVAACNKIQSQFTSGASSISQKAGVAAL 228 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 228 (352)
+.+.+....++..+.. ..++++++||||.+|++|+|+||+++ + +++++.+..... ...+++++.|.++..++
T Consensus 222 ~~~~~~~~~~~~~~~~-~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l 299 (412)
T PTZ00433 222 MVFNGATFTSVADFDT-TVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGM-LVCGPCSVVQAALGEAL 299 (412)
T ss_pred cccCCCCccchhhccC-CCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhh-ccCCCChHHHHHHHHHH
Confidence 8876544445555543 23579999999999999999999996 2 356776666543 23568999999999999
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE
Q 018665 229 GLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308 (352)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 308 (352)
... ...++++.++.++++++.+.+.|+++.++.+..|++|+|+|++++...- .+ ..+..++++.|++++||.
T Consensus 300 ~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~---~~---~~~~~~~~~~ll~~~gV~ 371 (412)
T PTZ00433 300 LNT--PQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKF---RD---IKSDVEFYEKLLEEENVQ 371 (412)
T ss_pred hcC--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhhc---CC---CCCHHHHHHHHHHhcCEE
Confidence 752 2678999999999999999999998767888889999999999864100 00 014678999998767999
Q ss_pred eccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 309 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 309 i~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
+.||..|+.++++||+++.+++++++++++|.++++..+
T Consensus 372 v~pg~~f~~~~~iRis~~~~~e~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 372 VLPGEIFHMPGFTRLTISRPVEVLREAVERIKAFCERHK 410 (412)
T ss_pred EeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 999999988899999999988999999999999998765
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-47 Score=345.45 Aligned_cols=324 Identities=26% Similarity=0.497 Sum_probs=282.0
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|++..|.+++| ++++++++ .+|++++++ +|++|+|+++++..++.+++++||+|+++.|+|..+...++.
T Consensus 57 ~~Y~~~~G~~~lr------~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~ 130 (387)
T PRK08912 57 NQYPPMMGLPELR------QAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRR 130 (387)
T ss_pred CCCCCCCCcHHHH------HHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHH
Confidence 3588889999999 99999999 778888888 999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.++++. .++.+|++++++.++++++++++++||||||.++|.+++++|+++|+++ |+++|+||+|+++.+++
T Consensus 131 ~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~-~~~ii~De~y~~~~~~~ 208 (387)
T PRK08912 131 AGGVPRLVRLEP-PHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRH-DAVAICDEVWEHVVFDG 208 (387)
T ss_pred cCCEEEEEecCc-ccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CeEEEEhhhhhhcccCC
Confidence 999999999863 3567999999999988899999999999999999999999999999999 99999999999888766
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....++..+....+++++++|+||.+|++|+|+||+++++++++.+........++.++..+.++..++.. ..++++
T Consensus 209 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~ 285 (387)
T PRK08912 209 RRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGK---PDDYFE 285 (387)
T ss_pred CCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhC---CHHHHH
Confidence 44455555544357899999999999999999999999999999988776655566777788888888764 367788
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
+.++.++++++.+.+.|+.. |+.+..+.+++++|++++.... ..+..++++.|+++.||.+.||..|+.
T Consensus 286 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~g~~~l~~~l~~~~~--------~~~~~~~~~~l~~~~gV~v~pg~~f~~~~ 356 (387)
T PRK08912 286 GMRADLARSRDRLAAGLRRI-GFPVLPSQGTYFLTVDLAPLGL--------AEDDVAFCRRLVEEAGVAAIPVSAFYEED 356 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEecccccCC--------CCCHHHHHHHHHhcCCEEEecchhhCCCC
Confidence 99999999999999999988 8888888899999999975200 016778999988777999999988742
Q ss_pred --CCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 318 --DTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 318 --~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
.+++||+++.+++++++++++|++++++
T Consensus 357 ~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 357 PVTSVVRFCFAKRDATLDEAVERLAAARRR 386 (387)
T ss_pred CCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 4799999999889999999999998753
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=343.77 Aligned_cols=318 Identities=29% Similarity=0.522 Sum_probs=280.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|+++.|.+++| +.+|++++ ++|+.+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|
T Consensus 64 ~Y~~~~g~~~lr------~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g 137 (387)
T PRK08960 64 RYTAARGLPALR------EAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVE 137 (387)
T ss_pred ccCCCCCCHHHH------HHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcC
Confidence 588899999999 99999999 88988999999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++++.++++.+|++++++.++++++++++++||||||.++|.+++++|+++|+++ |+++|+||+|.++.+++.
T Consensus 138 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~Y~~~~~~~~- 215 (387)
T PRK08960 138 GAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRAR-GGHLVVDEIYHGLTYGVD- 215 (387)
T ss_pred CeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CCEEEEEccccccccCCC-
Confidence 999999997666788999999999988889999999999999999999999999999999 999999999998877543
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
..++... .+++++++|+||.+|++|+|+||+++++++++.+......+..++|.+.|.++.+++... ...++++.
T Consensus 216 ~~~~~~~---~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~--~~~~l~~~ 290 (387)
T PRK08960 216 AASVLEV---DDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPE--TLAILEAR 290 (387)
T ss_pred CCChhhc---cCCEEEEeecccccCCcccEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcC--cHHHHHHH
Confidence 2333332 468999999999999999999999999999999988777677778999999999998642 25788889
Q ss_pred HHHHHHHHHHHHHHhcccCCcee-cCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC---
Q 018665 242 VKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--- 317 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--- 317 (352)
++.++++++.+.+.|+++ ++.+ ..|.+|+|+|+++++.. .+..+++++|++++||.+.||..|+.
T Consensus 291 ~~~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~~~~~~~~----------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 359 (387)
T PRK08960 291 RAEFARRRDFLLPALREL-GFGIAVEPQGAFYLYADISAFG----------GDAFAFCRHFLETEHVAFTPGLDFGRHQA 359 (387)
T ss_pred HHHHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEEEeccccC----------CCHHHHHHHHHHhCCEEEcCchHhCCCCC
Confidence 999999999999999987 7665 46889999999998621 16788988888777999999998864
Q ss_pred CCeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 318 DTCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 318 ~~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
++++||+++.+.+.+++++++|+++++
T Consensus 360 ~~~iRi~~~~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 360 GQHVRFAYTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 369999999988999999999998775
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=344.73 Aligned_cols=330 Identities=22% Similarity=0.380 Sum_probs=280.7
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|+++.|.+++| ++++++++ ++|+.+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..
T Consensus 67 ~~Y~~~~G~~~lr------~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~ 140 (409)
T PLN02656 67 NGYAPTVGLPQAR------RAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFR 140 (409)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHc
Confidence 3588999999999 99999999 7888889999999999999999999999999999999999999999899999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.+++..++++.+|++.+++.++++++++++++|+||||.+++.+++++|+++|+++ |++||+||+|.++.+++.
T Consensus 141 g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~ 219 (409)
T PLN02656 141 HLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKL-KILVIADEVYGHLAFGSN 219 (409)
T ss_pred CCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEehhhhhcccCCC
Confidence 9999999997556788999999999988899999999999999999999999999999999 999999999999988765
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcC--------hhHHHHHHhhhhccccCCChHHHHHHHHHhcccC
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP--------KHFVAACNKIQSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
...++..+.. ..++++++||||.++++|+|+||++++ +++++.+...... ..+++.+.|.++..+++..
T Consensus 220 ~~~~~~~~~~-~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~- 296 (409)
T PLN02656 220 PFVPMGVFGS-IVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDI-LGGPATFIQAAVPTILEQT- 296 (409)
T ss_pred CcccHHHhcc-cCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHhcC-
Confidence 4445444432 468999999999999999999999983 5788887765443 2467899999999999752
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCcee-cCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~ 311 (352)
.+.++++.++.++++++.+.+.|+.++++.. ..|++|+|+|++++...- .+ ..+..+++..++++.||.+.|
T Consensus 297 -~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~---~~---~~~~~~~~~~~l~~~gV~v~p 369 (409)
T PLN02656 297 -DESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLL---ED---ISDDIDFCFKLAREESVIILP 369 (409)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhc---CC---CCCHHHHHHHHHHhCCEEEec
Confidence 2578899999999999999999998755543 478899999999863200 00 013445655555566999999
Q ss_pred CCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 312 GDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 312 g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
|+.|+.++++||+++.+++++++++++|++++...++
T Consensus 370 g~~fg~~~~iRi~~~~~~e~l~eal~rl~~~~~~~~~ 406 (409)
T PLN02656 370 GTAVGLKNWLRITFAADPSSLEEALGRIKSFYLRHSK 406 (409)
T ss_pred chhcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999888999999999999999999999999987664
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=342.07 Aligned_cols=318 Identities=26% Similarity=0.471 Sum_probs=274.7
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|+++.|..++| +.+++++. .+|....+ ++|++|+|+++++..++.+++++||+|+++.|+|..+...++.
T Consensus 60 ~~Y~~~~G~~~lr------~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~ 133 (384)
T PRK12414 60 NQYAPMAGIAALR------EALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRL 133 (384)
T ss_pred CCcCCCCCcHHHH------HHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHH
Confidence 4588999999999 99999998 77877665 6899999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.++++. +++.+|++.+++.++++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.++.+++
T Consensus 134 ~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~-~~~ii~De~Y~~~~~~~ 211 (384)
T PRK12414 134 QGATPVAIKLSP-EDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNT-DIVILSDEVYEHVVFDG 211 (384)
T ss_pred cCCEEEEEecCc-cccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHC-CeEEEEhhhhhhccCCC
Confidence 999999999864 4577999999999988899999999999999999999999999999999 99999999999988876
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....++..++...++++++.|+||.+|++|+|+||+++++++++.+.........+++.+.|.++..+++. .....
T Consensus 212 ~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~----~~~~~ 287 (384)
T PRK12414 212 ARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAE----PASYL 287 (384)
T ss_pred CCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcC----ChHHH
Confidence 54445555443356899999999999999999999999999999998877666678999999999999976 23344
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
+.++.++++++.+.+.|++. |+.+.++.+|+++|+++++... .+..+++..++++.||.+.||..|+.
T Consensus 288 ~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~~~~---------~~~~~~~~~~l~~~gV~v~pg~~f~~~~ 357 (384)
T PRK12414 288 GLGAFYQRKRDLLARELAGS-RFELLPSEGSFFMLARFRHFSD---------ESDSDFVLRLIRDARVATIPLSAFYTDG 357 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCeecCCCcceEEEEcccccCC---------CCHHHHHHHHHHhCCEEEecchhhcCCC
Confidence 67788999999999999987 8888888999999998865210 14566776666667999999998852
Q ss_pred --CCeEEEEeecCHHHHHHHHHHHHH
Q 018665 318 --DTCIRISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 318 --~~~iRi~~~~~~~~l~~~~~~l~~ 341 (352)
.+++||+++.+++++++++++|.+
T Consensus 358 ~~~~~iRis~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 358 TDTGLIRLSFSKDDATLVEGARRLCS 383 (384)
T ss_pred CCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 468999999998999999999875
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-47 Score=350.39 Aligned_cols=330 Identities=20% Similarity=0.340 Sum_probs=275.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCC--CCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH-
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGL--SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR- 78 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~--~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~- 78 (352)
.|++..|.+++| +++|++++ +++. ++++++|++|+|+++++..++.+++++||.|++++|+|..+...++
T Consensus 81 ~Y~~~~G~~~LR------~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~ 154 (468)
T PLN02450 81 LFQDYHGLPAFK------NALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKW 154 (468)
T ss_pred cCCCCCChHHHH------HHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhh
Confidence 488888999999 99999999 6664 4688999999999999999999999999999999999999988888
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
..|.+++.++++.++++.+|++++++++++ +++++++++||||||.+++.+++++|+++|+++ |++||+||+|
T Consensus 155 ~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~-~~~iI~DE~Y 233 (468)
T PLN02450 155 RTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAK-NIHLISDEIY 233 (468)
T ss_pred cCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEEccc
Confidence 589999999987667788899999988753 789999999999999999999999999999999 9999999999
Q ss_pred cccccCCCCccccccCC--------CCCCceEEEeccccccccccceeEEEEcChh-HHHHHHhhhhccccCCChHHHHH
Q 018665 153 EHIIYAPATHTSFASLP--------GMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQSQFTSGASSISQKA 223 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~--------~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 223 (352)
+++.|++....+..... ...+++++++||||.+|++|+|+||++++++ +++.+.+.... ...|.+.|.+
T Consensus 234 ~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~Q~a 311 (468)
T PLN02450 234 SGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSF--GLVSSQTQYL 311 (468)
T ss_pred cccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 98877654333433221 1357899999999999999999999999865 56655554322 3478899999
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 224 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
+..+++++.....++++.++.++++++.+.+.|+++ |+.+..+.+|+|+|++++...... . .....++.+.|++
T Consensus 312 ~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~~~~~g~flwi~l~~~~~~~--~---~~~~~~l~~~ll~ 385 (468)
T PLN02450 312 LSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIKCLKSNAGLFCWVDMRHLLKSN--T---FEAEMELWKKIVY 385 (468)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCceEEEEEEchHhcCcC--C---chHHHHHHHHHHH
Confidence 999998743323467888999999999999999998 888888999999999997542100 0 0123567888887
Q ss_pred ccCEEeccCCCCCC--CCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 304 KAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 304 ~~gi~i~~g~~~~~--~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
+.||.+.||+.|+. ++++||+++. +++++++++++|++++++.+
T Consensus 386 ~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 386 EVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred hCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHhcc
Confidence 77999999998864 6899999996 88999999999999998765
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=342.63 Aligned_cols=328 Identities=48% Similarity=0.787 Sum_probs=287.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++..|..++| +.++++++ +++..+++++|++|+|+++++..++.+++++||+|++++|+|..+..+++..|
T Consensus 63 ~Y~~~~g~~~lr------~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g 136 (393)
T PRK05764 63 KYTPAAGIPELR------EAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAG 136 (393)
T ss_pred CcCCCCChHHHH------HHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcC
Confidence 588899999999 99999998 77877888999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++++.++++.+|++++++.++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+.+.+.+..
T Consensus 137 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~ 215 (393)
T PRK05764 137 GVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEH-DIWVLSDEIYEKLVYDGAE 215 (393)
T ss_pred CEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEeccccceeeCCCC
Confidence 999999998666788999999999988899999999999999999999999999999999 9999999999988776544
Q ss_pred ccccccC-CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 162 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 162 ~~~~~~~-~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
..++..+ ....+++++++|+||.+|++|+|+||+++++++++.+.........+++.+.|.++..+++. ...++++
T Consensus 216 ~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~ 292 (393)
T PRK05764 216 FTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG---PQDEVEE 292 (393)
T ss_pred cccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcC---ChHHHHH
Confidence 4455444 23357899999999999999999999999999999998877666678899999999999973 2577888
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCe
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 320 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~ 320 (352)
.++.++++++.+.+.|++++++.+..+++++++|++++...... + .++.++.+.+++++||.+.||..|+.+++
T Consensus 293 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~~~--~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~ 366 (393)
T PRK05764 293 MRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLGKS--I----TDSLEFAEALLEEAGVAVVPGIAFGAPGY 366 (393)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccccc--c----CCHHHHHHHHHHhCCEEEccccccCCCCE
Confidence 89999999999999999988899888899999999987642100 0 03578888888777999999998877899
Q ss_pred EEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 321 IRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
+||+++.+++++++++++|++++++.
T Consensus 367 vRis~~~~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 367 VRLSYATSLEDLEEGLERIERFLESL 392 (393)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998754
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=348.47 Aligned_cols=332 Identities=22% Similarity=0.399 Sum_probs=278.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcC--CCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~--~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~ 78 (352)
++|.+..|..++| +++|++++ +++ .++++++|++|+|+++++..++.+++++||.|+++.|+|..+...+.
T Consensus 89 ~~y~~~~G~~~LR------~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~ 162 (447)
T PLN02607 89 ALFQDYHGLKSFR------QAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLR 162 (447)
T ss_pred hccCCCcchHHHH------HHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH
Confidence 4688889999999 99999999 555 35789999999999999999999999999999999999999988776
Q ss_pred -hcCCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 79 -IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 79 -~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
..|.+++.++++.++++.+|++.+++++++ +++++++++||||||.++|.+++++|+++|+++ |+.+|+||+
T Consensus 163 ~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~-~i~lI~DEi 241 (447)
T PLN02607 163 WRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRK-NIHLVSDEI 241 (447)
T ss_pred hcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CCEEEEecc
Confidence 689999999987666778999999998863 788999999999999999999999999999999 999999999
Q ss_pred ccccccCCCCccccccCC------CCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHH
Q 018665 152 YEHIIYAPATHTSFASLP------GMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAG 224 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~------~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (352)
|..+.|++....++..+. ...++++++.|+||.+|++|+|+||+++ ++.+++.+...... ..+|++.|.++
T Consensus 242 Ya~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~--~~~s~~~q~~~ 319 (447)
T PLN02607 242 YSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLVSSQTQHLL 319 (447)
T ss_pred ccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 998877654445544321 1146899999999999999999999998 66777776655332 24788899999
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 225 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
..++++....+.++++.+++++++++.+.+.|++. |+.+..+.+|+|+|+++++...... .....++.++++++
T Consensus 320 ~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~~~~~~ag~fvw~~L~~~~~~~~-----~~~e~~l~~~ll~~ 393 (447)
T PLN02607 320 ASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIECLKGNAGLFCWMNLSPLLETPT-----REGELALWDSILRE 393 (447)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccCCeeEEEEEEchHhhcCCC-----chhHHHHHHHHHHh
Confidence 99998743324667788889999999999999987 8888889999999999975421100 01245788888877
Q ss_pred cCEEeccCCCCCC--CCeEEEEeec-CHHHHHHHHHHHHHHHhhhCC
Q 018665 305 AQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 305 ~gi~i~~g~~~~~--~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.||.+.||..|+. ++|+||+++. +++++++++++|.+++++.+.
T Consensus 394 ~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~~ 440 (447)
T PLN02607 394 VKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDRRKT 440 (447)
T ss_pred CCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 7999999998864 7899999997 899999999999999987665
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=340.26 Aligned_cols=322 Identities=32% Similarity=0.603 Sum_probs=280.8
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCC-CCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYT-PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~-~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|++..|..++| +.+++++. ..|..++ +++|++|+|+++++..++.+++++||+|++++|+|..+...++..
T Consensus 60 ~Y~~~~G~~~lr------~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~ 133 (389)
T PRK05957 60 KYQAVQGIPPLL------EAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMA 133 (389)
T ss_pred CCCCCCCCHHHH------HHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhc
Confidence 488889999999 99999998 6787776 678999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++.+ .++.+|++++++.++++++++++++||||||.++|.+++++|+++|+++ |+++|+||+|.++.+++.
T Consensus 134 g~~~~~v~~~--~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~li~De~y~~~~~~~~ 210 (389)
T PRK05957 134 GCQPILVPTD--DNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEH-GIYHISDEAYEYFTYDGV 210 (389)
T ss_pred CCEEEEeecC--CCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEeccchhccCCCC
Confidence 9999999885 4567999999999988899999999999999999999999999999999 999999999999887653
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
...+...+....++++++.|+||.+|++|+|+||+++++++++++.........+++.+.|.++..+++. ...++++
T Consensus 211 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~ 287 (389)
T PRK05957 211 KHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQV---GKSYCQQ 287 (389)
T ss_pred CccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC---ChHHHHH
Confidence 3334444434457899999999999999999999999999999998877666667888999999999975 2467888
Q ss_pred HHHHHHHHHHHHHHHhcccCCc-eecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 241 MVKAFRERRDFLVKSFGELEGV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
.++.++++++.+.+.|++++++ .+..+.+|+++|++++... ++.+++++|++++||.+.||..|+.
T Consensus 288 ~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~~-----------~~~~~~~~l~~~~gv~v~pg~~f~~~~ 356 (389)
T PRK05957 288 HLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTDL-----------NDFELVKQLIREYRVAVIPGTTFGMKN 356 (389)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCCC-----------ChHHHHHHHHHHCCEEEccchhhCCCC
Confidence 8888999999999999987664 6777888999999987542 7889999998767999999998865
Q ss_pred CCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 318 DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 318 ~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
++++||+++. +.+++++++++|.+.++++.
T Consensus 357 ~~~iRis~~~~~~~~l~~~~~~l~~~~~~~~ 387 (389)
T PRK05957 357 GCYLRIAYGALQKATAKEGIERLVQGLKTIV 387 (389)
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHHHhhh
Confidence 4599999986 78999999999999887653
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=343.83 Aligned_cols=326 Identities=22% Similarity=0.358 Sum_probs=278.5
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+++.|..++| +++++++++.++.+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.
T Consensus 68 ~Y~~~~g~~~lr------~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~ 141 (401)
T TIGR01264 68 GYAPTVGALSAR------EAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESMGI 141 (401)
T ss_pred CCCCCCCCHHHH------HHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCC
Confidence 588999999999 99999999667778899999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++.+.++.+|++.+++.++++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.++.+++...
T Consensus 142 ~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~ 220 (401)
T TIGR01264 142 EVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQ-CLPIIADEIYGDMVFSGATF 220 (401)
T ss_pred EEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEhhhhhhccCCccc
Confidence 99999987666778999999999888889999999999999999999999999999999 99999999999988876544
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcCh------hHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK------HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
.++..+.. ..++++++||||.++++|+|+||+++++ ++++.+..... ...+++++.|.++..+++.. .++
T Consensus 221 ~~~~~~~~-~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~--~~~ 296 (401)
T TIGR01264 221 EPLASLSS-TVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRT--PQE 296 (401)
T ss_pred ccHHHcCC-CCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhC--cHH
Confidence 55555543 2468999999999999999999999864 34444444332 23567899999999999752 268
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
++++.++.++++++.+.+.|++++++.+..|++|+|+|++++...- . ...+..++++.+++++||.+.||+.|+
T Consensus 297 ~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~---~---~~~~~~~~~~~l~~~~gI~v~pg~~f~ 370 (401)
T TIGR01264 297 YFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHF---P---EFKNDVEFTERLVAEQSVFCLPGSCFE 370 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEeccccc---C---CCCCHHHHHHHHHHhCCEEEeCchhcC
Confidence 8999999999999999999998878887789999999999764100 0 001567888888766799999999888
Q ss_pred CCCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 317 DDTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 317 ~~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
.++++|++++.+++++++++++|.+++++
T Consensus 371 ~~~~iRis~~~~~~~l~~~l~rl~~~~~~ 399 (401)
T TIGR01264 371 YPGFFRVVLTVPVVMMEEACSRIQEFCER 399 (401)
T ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 88999999999889999999999998865
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=346.71 Aligned_cols=333 Identities=21% Similarity=0.340 Sum_probs=272.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH-HHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~-~~~~ 80 (352)
.|++..|.+++| +++|+++. ++|+.+++++|++|+|+++++..++. ++.+||.|++++|+|+.+... ....
T Consensus 68 ~Y~~~~G~~~LR------eaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~ 140 (433)
T PRK06855 68 GYCPTKGVLETR------EFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHA 140 (433)
T ss_pred CCCCCCCCHHHH------HHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhc
Confidence 589999999999 99999999 77999999999999999999998875 788999999999999987754 3456
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhcc--CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~--~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
|.+++.+++++++++.+|+++|+++++ ++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++.|.
T Consensus 141 g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l~~~ 219 (433)
T PRK06855 141 GYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREY-DLFIICDEIYNNIVYN 219 (433)
T ss_pred CCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccccccC
Confidence 889999998766778899999999986 3678899999999999999999999999999999 9999999999999887
Q ss_pred CCCccccccCCCCCCceEEEeccccccccccceeEEEEcC-----h---hHHHHHHhhhhccccCCChHHHHHHHHHhcc
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-----K---HFVAACNKIQSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
+....++..+..+ .++++++||||.++++|+|+||++++ + .+++.+..... ...+++.+.|.++.++++.
T Consensus 220 ~~~~~sl~~~~~~-~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~ 297 (433)
T PRK06855 220 GKKTVPLSEVIGD-VPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSH 297 (433)
T ss_pred CCCCCCHHHHcCc-CCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcC
Confidence 6555566655432 36799999999998899999999973 2 23333333222 2345788999999999986
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCC----------------CCCCh
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG----------------KIENS 294 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~----------------~~~~~ 294 (352)
+.. +.++++.++.++++++.+.+.|++++++.+..|++|+|+|+++|+.......+.. ...+.
T Consensus 298 ~~~-~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (433)
T PRK06855 298 PEY-KNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPD 376 (433)
T ss_pred CcH-HHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCch
Confidence 432 5788999999999999999999988788888899999999999864210000000 00135
Q ss_pred HHHHHHHHHccCEEeccCCCCCC-CCeEEEEeec-CHHHHHHHHHHHHHHHhhh
Q 018665 295 ESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAA-SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 295 ~~~~~~l~~~~gi~i~~g~~~~~-~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~ 346 (352)
.+++..++++.||.+.||..|+. ..++||+++. +++++++++++|+++++++
T Consensus 377 ~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~~~~~i~~~~~~l~~~~~~~ 430 (433)
T PRK06855 377 KRFVYYLLASTGICVVPLSSFCTELNGFRVTLLERDEEKFEWIYQTLAEKIEEY 430 (433)
T ss_pred HHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCCcHHHHHHHHHHHHHHHHHH
Confidence 67777777778999999999864 3479999997 8999999999999999764
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=349.75 Aligned_cols=332 Identities=21% Similarity=0.360 Sum_probs=274.0
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcC--CCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~--~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~ 78 (352)
..|++..|.+++| +++|++++ ++| +++++++|++|+|+++++..++.+++++||.|++++|+|..+...++
T Consensus 88 ~~y~~~~G~~~LR------~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~ 161 (496)
T PLN02376 88 ANFQDYHGLKKFR------QAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLR 161 (496)
T ss_pred hccCCCCCcHHHH------HHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHH
Confidence 3588899999999 99999999 777 66889999999999999999999999999999999999999998787
Q ss_pred -hcCCeEEEecccCCCCcccCHHHHHhhc------cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 79 -IADATPVILPTRISENFLLDPKVLESKL------TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 79 -~~g~~v~~i~~~~~~~~~~d~~~l~~~l------~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
..|.+++.++++.++++++|++.+++++ ..+++++++++||||||.+++.+++++|+++|+++ |++||+||+
T Consensus 162 ~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~-~i~lI~DEi 240 (496)
T PLN02376 162 WRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRK-NIHLVVDEI 240 (496)
T ss_pred hhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEcC
Confidence 6899999999976567789999987653 23788999999999999999999999999999999 999999999
Q ss_pred ccccccCCCCccccccCCC-------CCCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhhccccCCChHHHHH
Q 018665 152 YEHIIYAPATHTSFASLPG-------MWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKA 223 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (352)
|+.+.|.+....++..+.. +.++++++.|+||.+|++|+|+||++++ +.+.+.+...... ...+++.|.+
T Consensus 241 Y~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~--~~vs~~~Q~a 318 (496)
T PLN02376 241 YAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSF--GLVSSQTQLM 318 (496)
T ss_pred ccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 9998887655556554421 1235677999999999999999999985 5555555544433 2478899999
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 224 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
+..+++++...+.++++.++.++++++.+.+.|++. |+.+..+.+|+|+|++++...... . +.+...++++.+.+
T Consensus 319 ~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~aG~flwi~l~~~~~~~-~---~~~~e~~l~~~ll~ 393 (496)
T PLN02376 319 LASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-DIACLTSNAGLFAWMDLRHLLRDR-N---SFESEIELWHIIID 393 (496)
T ss_pred HHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCceEEEEEEchhhhccC-C---chhHHHHHHHHHHH
Confidence 999998633223456677888999999999999987 888888999999999997532100 0 00123678888888
Q ss_pred ccCEEeccCCCCCC--CCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 304 KAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 304 ~~gi~i~~g~~~~~--~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
+.||.+.||+.|+. ++++||+++. +++++++++++|++++.+.+
T Consensus 394 ~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~~ 440 (496)
T PLN02376 394 KVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVSKNK 440 (496)
T ss_pred cCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHhh
Confidence 78999999998863 6899999996 88999999999999997544
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=336.80 Aligned_cols=313 Identities=25% Similarity=0.457 Sum_probs=274.4
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCC---CEEEecCCCCCChHHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPG---DEVIIPAPFWVSYPEM 76 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~---~~vl~~~~~~~~~~~~ 76 (352)
..|.++.|..++| ++++++++ ++|++++++ +|++|+|+++++..++.+++++| |.|+++.|+|..+...
T Consensus 30 ~~Y~~~~G~~~lr------~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~ 103 (350)
T TIGR03537 30 SQYPSALGTKALR------EAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERG 103 (350)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHH
Confidence 4588889999999 99999999 779988887 99999999999999999998876 6999999999999999
Q ss_pred HHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc
Q 018665 77 ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 156 (352)
Q Consensus 77 ~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~ 156 (352)
++..|.+++.++++.+.++.+|+++++++++++++++++++|+||||.+++.+++++|+++|+++ |+++|+||+|..+.
T Consensus 104 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~ 182 (350)
T TIGR03537 104 ALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREH-GIILCSDECYTEIY 182 (350)
T ss_pred HHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHc-CcEEEEeccccccc
Confidence 99999999999997666778999999999988999999999999999999999999999999999 99999999999876
Q ss_pred cCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChH
Q 018665 157 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
+.+ ...++... +.++++++.|+||.+|++|+|+||+++++++++.+......++.+.+.+.+.++.+++.. ..
T Consensus 183 ~~~-~~~~~~~~--~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~ 255 (350)
T TIGR03537 183 FGE-PPHSALEV--GIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSD----DN 255 (350)
T ss_pred cCC-CCCchhhc--CcCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCC----cH
Confidence 543 23333333 247899999999999989999999999999999998877666666777788888777764 57
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
+.++.+..++++++.+.+.|++. |+++..+.+|+++|+++|+.. ++.++++.|.++ ||.+.||..|+
T Consensus 256 ~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~g~~~~~~~~~~~~-----------~~~~l~~~L~~~-gv~v~~g~~f~ 322 (350)
T TIGR03537 256 HVLERRKIFKRKRDLFIEFFNKV-GLEYLYPDATFYLWVKVPSGI-----------DAKDYALRLLEN-GIVVAPGENFG 322 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeEEEEEEECCCCC-----------CHHHHHHHHHHC-CEEEcCchhhC
Confidence 78888999999999999999987 888888889999999998642 678999999875 99999999886
Q ss_pred C--CCeEEEEeecCHHHHHHHHHHHHH
Q 018665 317 D--DTCIRISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 317 ~--~~~iRi~~~~~~~~l~~~~~~l~~ 341 (352)
. ++++||+++.+++++++++++|++
T Consensus 323 ~~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 323 SGEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 4 579999998788999999999875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=345.75 Aligned_cols=321 Identities=24% Similarity=0.420 Sum_probs=291.1
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|+++.|..++| +.+++++. ..|+.+.+++|++|+|+++|++.+.+.++++||.|++++|+|.+...+++..
T Consensus 126 ~~y~~~~G~~~LR------~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~ 199 (459)
T COG1167 126 LQYGPTAGLPELR------EAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEAL 199 (459)
T ss_pred hcCCCCCCcHHHH------HHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHc
Confidence 4688889999999 99999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccC-CeeEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p-~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
|.++..||++++ ++|+|.|++.++. ++++++++.. |||||.++|.++.++|+++|++| |++||+||.|+++.++
T Consensus 200 g~~~~~vp~d~~---G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~-~~~IIEDD~y~el~~~ 275 (459)
T COG1167 200 GARVIPVPVDED---GIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKY-DVLIIEDDYYGELRYD 275 (459)
T ss_pred CCcEEecCCCCC---CCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHc-CCeEEeeCcchhhhcC
Confidence 999999999743 3899999999975 6787776443 89999999999999999999999 9999999999999998
Q ss_pred CCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHH
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 238 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (352)
+...+++..+.. .+++++++||||.+. ||+|+||+++++++++.+.........+++.+.|.+++..+..+.. .+++
T Consensus 276 ~~p~~~l~~ld~-~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~-~~hl 352 (459)
T COG1167 276 GPPPPPLKALDA-PGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHL 352 (459)
T ss_pred CCCCCChHhhCC-CCCEEEEeeehhhcc-cccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCH-HHHH
Confidence 877777777765 689999999999997 9999999999999999999988888899999999999999996554 7889
Q ss_pred HHHHHHHHHHHHHHHHHhccc-C-CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc-CCCC
Q 018665 239 SKMVKAFRERRDFLVKSFGEL-E-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAF 315 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~-~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~-g~~~ 315 (352)
++++..++++++.+.+.|+++ + ++++..|.+|+|+|+++|+.. +..++.+.+.++ |+.+.| |..|
T Consensus 353 ~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~-----------~~~~l~~~a~~~-gv~i~~~g~~f 420 (459)
T COG1167 353 RRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGI-----------DARELLAAALEK-GVVVTPLGSAF 420 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCC-----------CHHHHHHHHHHC-CCEEEcCCccc
Confidence 999999999999999999987 3 688889999999999999875 788999888876 888888 8777
Q ss_pred CCC----CeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 316 GDD----TCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 316 ~~~----~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
... +++|++++. ++++++++++.|.+++++..
T Consensus 421 ~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 421 SADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 643 489999999 88999999999999998754
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-46 Score=337.59 Aligned_cols=320 Identities=36% Similarity=0.627 Sum_probs=279.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|++..|..++| +.+|++++ ++|+.++++ +|++|+|+++++..++.+++++||+|++++|+|..+...++..
T Consensus 60 ~Y~~~~g~~~lr------~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~ 133 (387)
T PRK07683 60 SYTHNAGLLELR------KAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLC 133 (387)
T ss_pred CCCCCCCCHHHH------HHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHc
Confidence 588889999999 99999999 779888888 9999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++. +++.+|.+++++.++++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|+.+.+.+.
T Consensus 134 g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~ 211 (387)
T PRK07683 134 GAKPVFIDTRS-TGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDK-NIFVLSDEIYSELVYEQP 211 (387)
T ss_pred CCEEEEeecCc-ccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEecccccceeCCC
Confidence 99999999874 5677899999999988899999999999999999999999999999999 999999999999877543
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
..++.......+++++++|+||.+|++|+|+||+++++++++.+.........+++.+.|.++..+++. ...+.++
T Consensus 212 -~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~ 287 (387)
T PRK07683 212 -HTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTA---GKDDAKM 287 (387)
T ss_pred -cCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhC---ChHHHHH
Confidence 345555533457899999999999999999999999999999988765444456788899999999976 2456788
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--C
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D 318 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~ 318 (352)
.++.++++++.+.+.|++. ++.+..+++|+++|+.++... .+..+++..+++++||.+.||..|+. +
T Consensus 288 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ll~~~gI~v~pg~~f~~~~~ 356 (387)
T PRK07683 288 MRHQYKKRRDYVYNRLISM-GLDVEKPTGAFYLFPSIGHFT----------MSSFDFALDLVEEAGLAVVPGSAFSEYGE 356 (387)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCcccCCCeeEEEEEecccCC----------CCHHHHHHHHHHhCCEEEcCchhhCCCCC
Confidence 8889999999999999987 888888999999999887521 15677887877777999999998864 4
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 319 TCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
+++||+++.+++++++++++|.+++++
T Consensus 357 ~~~Ri~~~~~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 357 GYVRLSYAYSIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 799999999889999999999998864
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=340.86 Aligned_cols=319 Identities=27% Similarity=0.474 Sum_probs=281.4
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|.+..|.+++| +.+++++. .++...+++ +|++|+|+++++..++.+++++||+|+++.|+|..+...++.
T Consensus 61 ~~Y~~~~G~~~lr------~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~ 134 (386)
T PRK09082 61 NQYPPMTGVAALR------EAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIEL 134 (386)
T ss_pred CCCCCCCCcHHHH------HHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHH
Confidence 3588889999999 99999999 678777665 899999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.++++. .++.+|++++++.++++++++++++|+||||.+++.+++++|+++|+++ |+++|+||+|.++.+++
T Consensus 135 ~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~-~i~li~De~y~~~~~~~ 212 (386)
T PRK09082 135 AGGRAVRVALQP-PDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGT-DIYVLSDEVYEHIVFDG 212 (386)
T ss_pred cCCEEEEEecCc-ccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHC-CEEEEEehhhhhhccCC
Confidence 999999999964 3578999999999988899999999999999999999999999999999 99999999999988876
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....++..+....+++++++|+||.+|++|+|+||+++++++++.+........++++.+.|.++..+++. .+.+.+
T Consensus 213 ~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~ 289 (386)
T PRK09082 213 AGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRA---EPEHYL 289 (386)
T ss_pred CCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---ChHHHH
Confidence 55566666655467999999999999999999999999999999998877666677999999999999874 267788
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
++++.++++++.+.+.|++. ++.+..+.+|+++|+++|+..+ .+..++++.|++++||.+.||+.|+.
T Consensus 290 ~~~~~~~~~~~~~~~~L~~~-~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~v~v~pg~~f~~~~ 359 (386)
T PRK09082 290 ELPAFYQAKRDRFRAALANS-RFKLLPCEGTYFQLVDYSAISD---------LDDVEFCQWLTREHGVAAIPLSVFYADP 359 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcccCCCeeEEEEEeccccCC---------CCHHHHHHHHHHhCCEEEeCcHHhCCCC
Confidence 88999999999999999986 8888888999999999874200 16889999987778999999987742
Q ss_pred --CCeEEEEeecCHHHHHHHHHHHHH
Q 018665 318 --DTCIRISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 318 --~~~iRi~~~~~~~~l~~~~~~l~~ 341 (352)
.+++||+++.+++++++++++|++
T Consensus 360 ~~~~~~Ri~~~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 360 FPHRLVRLCFAKQEETLDAAAERLCQ 385 (386)
T ss_pred CCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 468999999988999999999875
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=348.58 Aligned_cols=337 Identities=22% Similarity=0.358 Sum_probs=275.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|+++.|.+++| +++|+++. ++|+++++++|++|+|+++++..++.+++ ++||.|+++.|+|..+...++..
T Consensus 110 ~Y~~~~G~~~LR------~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~ 183 (481)
T PTZ00377 110 AYTDSAGYPFVR------KAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLL 183 (481)
T ss_pred CcCcccCCHHHH------HHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHc
Confidence 489999999999 99999999 88999999999999999999999999998 79999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
|.+++.++++++++|.+|+++|++.+++ +++++++++||||||.+++.+++++|+++|+++ |++||+||+|.+
T Consensus 184 g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~-~~~iI~De~Y~~ 262 (481)
T PTZ00377 184 GGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEK-GIVLMADEVYQE 262 (481)
T ss_pred CCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEehhhHh
Confidence 9999999998777888999999999864 789999999999999999999999999999999 999999999999
Q ss_pred cccCC-CCcccccc----CCCC---CCceEEEeccccc-cccccceeEEEEc---ChhHHHHHHhhhhccccCCChHHHH
Q 018665 155 IIYAP-ATHTSFAS----LPGM---WERTLTVNGFSKA-FAMTGWRLGYIAG---PKHFVAACNKIQSQFTSGASSISQK 222 (352)
Q Consensus 155 ~~~~~-~~~~~~~~----~~~~---~~~~i~~~s~sK~-~g~~g~~~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (352)
+.|++ ....++.. +... ..+++++.|+||. ++++|+|+||+++ ++++++.+.+... ...+++.+.|.
T Consensus 263 l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~-~~~~~~~~~Q~ 341 (481)
T PTZ00377 263 NIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLAS-INLCSNVVGQL 341 (481)
T ss_pred hccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhh-eecCCChHHHH
Confidence 88853 23334332 2221 1368999999997 5889999999986 8899999888664 33468999999
Q ss_pred HHHHHhcccCCC----hHH---HHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecC--CccCCcccCCCCCCC
Q 018665 223 AGVAALGLGYAG----GEV---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS--TYYGSEAEGFGKIEN 293 (352)
Q Consensus 223 ~~~~~l~~~~~~----~~~---~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~ 293 (352)
++..+++..... ..+ +.++.+.++++++.+.+.|++++|+.+..|++|+|+|++++ ........+. +..+
T Consensus 342 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~-~~~~ 420 (481)
T PTZ00377 342 MTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKER-GLAP 420 (481)
T ss_pred HHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhc-CCCc
Confidence 999999642111 123 33444567899999999999988999999999999997653 2110000000 0012
Q ss_pred hHHHHHHHHHccCEEeccCCCCCC---CCeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 294 SESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 294 ~~~~~~~l~~~~gi~i~~g~~~~~---~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
...++..++++.||.+.||+.|+. .+++||+++.+++++++++++|+++++++..
T Consensus 421 ~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~~~~~~~ 478 (481)
T PTZ00377 421 DVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHESFMK 478 (481)
T ss_pred HHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777999999999973 3599999998888999999999999987643
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=338.53 Aligned_cols=322 Identities=32% Similarity=0.559 Sum_probs=280.1
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|+++.|..++| +.+++++. ++|++..++ +|++|+|+++++..++.+++++||+|+++.|+|..+...++.
T Consensus 55 ~~Y~~~~g~~~lr------~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~ 128 (387)
T PRK07777 55 NQYPPGPGIPELR------AAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAM 128 (387)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHH
Confidence 4588889999999 99999998 788887776 799999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCC-CCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 80 ADATPVILPTRIS-ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 80 ~g~~v~~i~~~~~-~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
.|.+++.++++++ .++.+|++++++.++++++++++++||||||.+++.+++++|+++|+++ ++++|+||+|+++.+.
T Consensus 129 ~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~y~~~~~~ 207 (387)
T PRK07777 129 AGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEH-DLLVITDEVYEHLVFD 207 (387)
T ss_pred CCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhc-CcEEEEeccchhcccC
Confidence 9999999998765 3677999999999988899999999999999999999999999999999 9999999999998876
Q ss_pred CCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHH
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 238 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (352)
+..+.++..++...++++++.|+||.+|++|+|+||+++++++++.+...........+.+.|.++..++.. ...++
T Consensus 208 ~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~ 284 (387)
T PRK07777 208 GARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDH---EDAWV 284 (387)
T ss_pred CCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhC---CcHHH
Confidence 654445555443357899999999999999999999999999999888776655666788888888888875 25778
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC-
Q 018665 239 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD- 317 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~- 317 (352)
+++++.++++++.+.+.|++. ++++..+++++++|++++... ..++.++++.|++++||.+.||..|+.
T Consensus 285 ~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~l~~~~gv~v~pg~~f~~~ 354 (387)
T PRK07777 285 AALRDSLQAKRDRLAAGLAEA-GFEVHDSAGTYFLCADPRPLG---------YDDGTEFCRALPERVGVAAIPMSVFYDP 354 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCccCCCcceEEEecccccC---------CCCHHHHHHHHHHhCCEEEeCchHhCCC
Confidence 888999999999999999987 888888899999999876311 016789999998777999999987753
Q ss_pred ----CCeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 318 ----DTCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 318 ----~~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
++++||+++.+++++++++++|+++.
T Consensus 355 ~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 355 ADAWNHLVRFAFCKRDDTLDEAIRRLRALR 384 (387)
T ss_pred CcCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 35899999998999999999998865
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=337.48 Aligned_cols=323 Identities=34% Similarity=0.601 Sum_probs=277.7
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|.+..|.+++| ++++++++ ++++.+.+ ++|++|+|+++++..++.+++++||+|++++|+|..+...++.
T Consensus 61 ~~Y~~~~g~~~lr------~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~ 134 (391)
T PRK07309 61 SHYTGMAGLLELR------QAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNL 134 (391)
T ss_pred CCCCCCCCcHHHH------HHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHH
Confidence 4688899999999 99999999 78887764 7999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 156 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~ 156 (352)
.|.+++.++.+. .++.+|++.++++++. +++++++++|+||||.+++.+++++|+++|+++ |+++|+|++|+++.
T Consensus 135 ~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~-~~~ii~D~~y~~~~ 212 (391)
T PRK07309 135 VGAEIVEIDTTE-NDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKY-DIFVISDEVYSELT 212 (391)
T ss_pred cCCEEEEEecCC-cCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEEcccccee
Confidence 999999999863 4567899999998863 688999999999999999999999999999999 99999999999988
Q ss_pred cCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChH
Q 018665 157 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
+++....++.... .+++++++|+||.+|++|+|+||+++++++++.+.........+++.+.|.++..+++++ ..
T Consensus 213 ~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~ 287 (391)
T PRK07309 213 YTGEPHVSIAEYL--PDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNG---KD 287 (391)
T ss_pred eCCCCCCCHHHhc--cCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCC---hh
Confidence 8654444544432 478999999999999999999999999999999887654444578899999999999762 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
+....++.++++++.+.+.|++. ++.+..+.+|+++|+++|+... .++.++++.++++.||.+.||..|+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~~~~~~l~~~~~---------~~~~~~~~~l~~~~gv~v~pg~~f~ 357 (391)
T PRK07309 288 DALPMKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYIFAKIPAGYN---------QDSFKFLQDFARKKAVAFIPGAAFG 357 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEECCCCCC---------CCHHHHHHHHHHhCCEEEeCchhhC
Confidence 45567788889999999999987 8888889999999999876421 1467788887766799999999876
Q ss_pred C--CCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 317 D--DTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 317 ~--~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
. ++++||+++.+.+++++++++|++++++..
T Consensus 358 ~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 358 PYGEGYVRLSYAASMETIKEAMKRLKEYMEEHA 390 (391)
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHHHHHhhc
Confidence 5 579999999888999999999999997653
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=350.22 Aligned_cols=328 Identities=25% Similarity=0.415 Sum_probs=271.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++..|..++| +++|+++. +.+..+++++|++|+|+++++..++.+++++||+|+++.|+|..|...++..|
T Consensus 180 ~Y~~~~G~~~lR------eaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g 253 (517)
T PRK13355 180 GYSDSKGLFSAR------KAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAG 253 (517)
T ss_pred CCCCCcChHHHH------HHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCC
Confidence 588999999999 99999999 55546889999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++++++++|.+|+++++++++++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++.+++..
T Consensus 254 ~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~-~~~ii~DE~Y~~~~~~~~~ 332 (517)
T PRK13355 254 GTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREH-QLIIFSDEIYDRLVMDGLE 332 (517)
T ss_pred CEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEehhhhhhcCCCCC
Confidence 999999998777899999999999988999999999999999999999999999999999 9999999999999887755
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEc--ChhH----HHHHHhhhhccccCCChHHHHHHHHHhcccCCCh
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--PKHF----VAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
+.++..+.. ...++++.||||.++++|+|+||+++ ++++ ++.+... .....+.+.+.|.++..++.......
T Consensus 333 ~~s~~~~~~-~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~ 410 (517)
T PRK13355 333 HTSIASLAP-DLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVK 410 (517)
T ss_pred cccHHHhCC-CCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHH
Confidence 566665532 23467789999999999999999995 3443 3334322 22335688899999999996421113
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
+++.+.. ++.++++.+.+.|++++|+++..|+++||+|++++...- ...+..+++..++++.||.+.||+.|
T Consensus 411 ~~~~~~~-~~~~~r~~l~~~L~~~~g~~~~~p~g~fy~~~~l~~~~~-------~~~~~~~~~~~ll~~~gV~v~pg~~F 482 (517)
T PRK13355 411 DYLVPGG-RVYEQRELVYNALNAIPGISAVKPKAAFYIFPKIDVKKF-------NIHDDEQFALDLLHDKKVLIVQGTGF 482 (517)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhcCCCcccCCCCeeeEEEeecCcccC-------CCCCHHHHHHHHHHhCCEEEeCcchh
Confidence 4555543 344567899999999889999999999999998864210 00145567777676779999999988
Q ss_pred C--CCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 316 G--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 316 ~--~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
+ .++++||+++.+++++++++++|+++++.++
T Consensus 483 ~~~~~~~~Ris~~~~~~~l~~a~~rl~~~~~~~~ 516 (517)
T PRK13355 483 NWDKPDHFRVVYLPRLEDLEDAMDRLADFFSYYR 516 (517)
T ss_pred CCCCcCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence 6 4689999998899999999999999997653
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-47 Score=324.91 Aligned_cols=332 Identities=39% Similarity=0.667 Sum_probs=292.1
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
+-|+...|.++++ +.+++.++ .+|....+ ++|++|.|+.+++..++..++++||+|++..|.|..|....+.
T Consensus 63 ~qYt~~~G~p~L~------~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~m 136 (420)
T KOG0257|consen 63 NQYTRGYGLPQLR------KALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVM 136 (420)
T ss_pred ccccccCCchHHH------HHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhh
Confidence 3588999999999 99999999 56666655 6799999999999999999999999999999999999999999
Q ss_pred cCCeEEEeccc------CCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc
Q 018665 80 ADATPVILPTR------ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153 (352)
Q Consensus 80 ~g~~v~~i~~~------~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~ 153 (352)
.|..++.++.. ...+|.+|+++++.++.+++++|++++||||||.+++.+++++|+++|++| |+++|.||+|.
T Consensus 137 aG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~-~~lvisDevYe 215 (420)
T KOG0257|consen 137 AGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKH-GLLVISDEVYE 215 (420)
T ss_pred cCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CEEEEEhhHhH
Confidence 99999999998 456788999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCC
Q 018665 154 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
.+.+++..+..+..+++.+++.+-++|++|++|+.|+|+||+++++.++..+...+....+..+++.|.|.++++..+..
T Consensus 216 ~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~ 295 (420)
T KOG0257|consen 216 WLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELA 295 (420)
T ss_pred HHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhh
Confidence 99999998899999999999999999999999999999999999999999999998888899999999999999987542
Q ss_pred C-----hHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccC-CcccCCCCCCChHHHHHHHHHccCE
Q 018665 234 G-----GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 234 ~-----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
+ ..+..++.+.++++|+.+.+.|+++ |++++.|++++|+|.+++.... .-.++....-+.-.+..++.++.|+
T Consensus 296 ~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv 374 (420)
T KOG0257|consen 296 CLQPGGSYFITELVKEYKEKRDILAKALEEL-GLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGV 374 (420)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcE
Confidence 1 1455668999999999999999999 9999999999999999982110 1111111111455788999999999
Q ss_pred EeccCCCCCCCC-------eEEEEeecCHHHHHHHHHHHHH
Q 018665 308 ALVPGDAFGDDT-------CIRISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 308 ~i~~g~~~~~~~-------~iRi~~~~~~~~l~~~~~~l~~ 341 (352)
.+.|++.|+.++ .+|+++..+++.++++.++|++
T Consensus 375 ~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 375 VVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIERLKK 415 (420)
T ss_pred EEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 999999998754 5777777788999999999883
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=337.59 Aligned_cols=319 Identities=24% Similarity=0.430 Sum_probs=277.7
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|+++.|.+++| +.++++++ .+|..+.+++|++|+|+++++..++.+++++||+|+++.|+|..+...++..
T Consensus 61 ~~Y~~~~G~~~lr------~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~ 134 (386)
T PRK07550 61 HLYGPVEGLPELR------EAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDML 134 (386)
T ss_pred cCCCCCCCCHHHH------HHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhc
Confidence 3588899999999 99999999 8898889999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++++.++.+|++++++.++++++++++++||||||.++|.+++++|+++|+++ |+++|+||+|+++.+.+.
T Consensus 135 g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~-~~~iI~Dd~y~~~~~~~~ 213 (386)
T PRK07550 135 GIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRH-GIALILDETYRDFDSGGG 213 (386)
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CeEEEEeccchhhccCCC
Confidence 9999999997656777899999999988899999999999999999999999999999999 999999999998765433
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
...++.......++++++.|+||.+|++|+|+||+++++++++.+.......+.+++.+.|.++..+++. .+++.++
T Consensus 214 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~ 290 (386)
T PRK07550 214 APHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN---LADWRAG 290 (386)
T ss_pred CCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc---HHHHHHH
Confidence 2233332222246889999999999999999999999999999988877766777899999999999875 3678888
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCC-ccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST-YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
.++.++++++.+.+.|++++++.+ .+.+|+++|++++. .. ++.++++.|++++||.+.||..|+.
T Consensus 291 ~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~~~~~~~~~~~~-----------~~~~l~~~l~~~~gv~v~pg~~f~~~~ 358 (386)
T PRK07550 291 NRAEIARRRDAFRAVFARLPGWEL-LASGAYFAYVRHPFPDR-----------PSREVARRLAKEAGILCLPGTMFGPGQ 358 (386)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcee-CCCceEEEEecCCCCCC-----------CHHHHHHHHHHhcCEEEeCchhhCCCC
Confidence 889999999999999988756654 46788999999875 32 7889999988777999999988863
Q ss_pred CCeEEEEeec-CHHHHHHHHHHHHHH
Q 018665 318 DTCIRISYAA-SLTTLQAAVERIKKG 342 (352)
Q Consensus 318 ~~~iRi~~~~-~~~~l~~~~~~l~~~ 342 (352)
++++||+++. +++++++++++|+++
T Consensus 359 ~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 359 EGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred CCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 5799999997 789999999999875
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=337.89 Aligned_cols=322 Identities=33% Similarity=0.546 Sum_probs=277.3
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|++..|.+++| +++|++++ ++|+.+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..
T Consensus 61 ~~Y~~~~g~~~lr------~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~ 134 (388)
T PRK07337 61 TQYTSALGLAPLR------EAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAA 134 (388)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc
Confidence 3588888999999 99999999 7898889999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++.+.++.+|++++++.++++++++++++||||||.+++.+++++|+++|+++ ++++|+||+|.++.+.+.
T Consensus 135 g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~ 213 (388)
T PRK07337 135 EGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRAR-GGFTIVDEIYQGLSYDAA 213 (388)
T ss_pred CCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHC-CCEEEEeccccccccCCC
Confidence 9999999997666778999999999988999999999999999999999999999999999 999999999998877553
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
..+.... .++++++.|+||.+|++|+|+||+++++++++.+.........+.+.+.|.++..++..+. ..+..+
T Consensus 214 -~~~~~~~---~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~--~~~~~~ 287 (388)
T PRK07337 214 -PVSALSL---GDDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDT--LAIYER 287 (388)
T ss_pred -CcChhhc---cCCEEEEEechhhcCCchhheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCc--hHHHHH
Confidence 2233222 4678999999999999999999999999999999887766666789999999999987532 245677
Q ss_pred HHHHHHHHHHHHHHHhcccCCcee-cCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
.++.++++++.+.+.|++. ++.+ ..|++|+|+|++++.... .. ..++.++++++++++||.+.||..|+.
T Consensus 288 ~~~~~~~~r~~~~~~L~~~-~~~~~~~p~~g~f~~~~~~~~~~--~~----~~~~~~~~~~ll~~~gv~v~pg~~f~~~~ 360 (388)
T PRK07337 288 RRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVAH--PA----AGDSAALTQAMLHDAGVVLVPGRDFGPHA 360 (388)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCccccCCCeeEEEEEecccccC--CC----CCCHHHHHHHHHHhCCEEEeCchhhCCCC
Confidence 8889999999999999987 7665 468899999999975210 00 016778888877777999999998864
Q ss_pred -CCeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 318 -DTCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 318 -~~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
++++||+++.+++++++++++|.+++
T Consensus 361 ~~~~~Ri~~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 361 PRDYIRLSYATSMSRLEEAVARLGKLF 387 (388)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 47999999998899999999998865
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-46 Score=338.63 Aligned_cols=315 Identities=25% Similarity=0.444 Sum_probs=271.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCC--CCCC-cEEEeCChHHHHHHHHHHhcCCCCE--EEecCCCCCChHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLS--YTPD-QILVSNGAKQSILQAVLAVCSPGDE--VIIPAPFWVSYPE 75 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~--~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~--vl~~~~~~~~~~~ 75 (352)
..|+++.|.+++| +++|+++. +++++ ++++ +|++|+|+++++..++.+++++||+ |+++.|+|..+..
T Consensus 58 ~~Y~~~~G~~~lr------~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~ 131 (393)
T TIGR03538 58 STYPTTKGLPELR------QAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEG 131 (393)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHH
Confidence 4688899999999 99999998 76776 5774 8999999999999999999999986 9999999999999
Q ss_pred HHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 76 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 76 ~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
.++..|.+++.+++++++++.+|++++++++.++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++
T Consensus 132 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~ 210 (393)
T TIGR03538 132 AALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQY-GFIIASDECYSEL 210 (393)
T ss_pred HHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CEEEEECcchhhc
Confidence 999999999999997666788999999998877899999999999999999999999999999999 9999999999988
Q ss_pred ccCCC-Cccccc----cCC-CCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhc
Q 018665 156 IYAPA-THTSFA----SLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALG 229 (352)
Q Consensus 156 ~~~~~-~~~~~~----~~~-~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 229 (352)
.+.+. ...++. ... ..+++++++.|+||.++++|+|+||+++++++++.+.........+++.+.|.++.+.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 290 (393)
T TIGR03538 211 YFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWN 290 (393)
T ss_pred ccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhc
Confidence 77542 222211 111 135789999999999989999999999999999998877665566788899998888886
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 230 LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
. .+++++.++.++++++.+.+.|++. +.+..|++|+|+|+++| . +..++++.|++++||.+
T Consensus 291 ~----~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~gg~f~~~~~~-~------------~~~~~~~~l~~~~gV~v 351 (393)
T TIGR03538 291 D----EQHVRENRALYREKFAAVLEILGQV--LDLELPDAGFYLWPKVP-G------------DDEAFARALYEEENVTV 351 (393)
T ss_pred C----hHHHHHHHHHHHHHHHHHHHHHHhh--CcccCCCeeEEEEEECC-C------------CHHHHHHHHHHHCCEEE
Confidence 4 5778889999999999999999864 45567899999999998 2 66788888877679999
Q ss_pred ccCCCCCC--------CCeEEEEeecCHHHHHHHHHHHHHH
Q 018665 310 VPGDAFGD--------DTCIRISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 310 ~~g~~~~~--------~~~iRi~~~~~~~~l~~~~~~l~~~ 342 (352)
.||+.|+. .+++||+++.+++++++++++|+++
T Consensus 352 ~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 352 LPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERIRSF 392 (393)
T ss_pred eCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHHHHh
Confidence 99998742 4699999998889999999999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=337.93 Aligned_cols=327 Identities=24% Similarity=0.410 Sum_probs=279.6
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|++..|..++| +.++++++ +.++.+++++|++|+|+++++..++.+++++||+|+++.|+|..+...++..
T Consensus 67 ~~Y~~~~g~~~lr------~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~ 140 (403)
T TIGR01265 67 NGYAPSVGALAAR------EAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFS 140 (403)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc
Confidence 3588899999999 99999999 7788888999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++.+.++.+|++.+++.++++++++++++|+||||.+++.+++++|+++|+++ |+++|+|++|+++.+++.
T Consensus 141 g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~ 219 (403)
T TIGR01265 141 GLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKL-GIPIIADEIYGHMVFGDA 219 (403)
T ss_pred CCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEccccccccCCC
Confidence 9999999986656778999999999988899999999999999999999999999999999 999999999999887765
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcC-h-h-----HHHHHHhhhhccccCCChHHHHHHHHHhcccCC
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-K-H-----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
...++..+.. ..++++++|+||.++++|+|+||++++ + + +++.+..... ...+++.+.|.++..+++..
T Consensus 220 ~~~~~~~~~~-~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~-- 295 (403)
T TIGR01265 220 PFIPMASFAS-IVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILENT-- 295 (403)
T ss_pred Cccchhhhcc-CCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHhC--
Confidence 4455555543 357999999999998899999999974 2 2 3344444322 23568999999999999752
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
...++++.++.++++++.+.+.|+.++++.+..|.+|+|+|++++.... . +..+..++++.++++.||.+.||.
T Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~---~---~~~~~~~~~~~l~~~~gv~v~pg~ 369 (403)
T TIGR01265 296 PQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELF---P---EIKDDVDFCEKLVREESVICLPGS 369 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEecccccc---C---CCCCHHHHHHHHHHhCCEEEeCcc
Confidence 2578899999999999999999998878887789999999999875310 0 001567888887777799999999
Q ss_pred CCCCCCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 314 AFGDDTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 314 ~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
.|+.++++||+++.+++++++++++|++++.+
T Consensus 370 ~f~~~~~iRis~~~~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 370 AFGLPNWVRITITVPESMLEEACSRIKEFCER 401 (403)
T ss_pred ccCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 99888999999999889999999999998865
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=335.98 Aligned_cols=323 Identities=31% Similarity=0.569 Sum_probs=280.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|++..|..++| +.+++++.++++.+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.
T Consensus 61 ~Y~~~~g~~~lr------~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~ 134 (397)
T PRK07568 61 AYSHSQGIPELR------EAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGV 134 (397)
T ss_pred CcCCCCCCHHHH------HHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCC
Confidence 588889999999 99999999778888899999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCccc-CHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 83 TPVILPTRISENFLL-DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~-d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+++.++++.+.++.. ++++++++++++++++++++|+||||.+++.+++++|+++|+++ |+++|+|++|.++.+++..
T Consensus 135 ~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~-~~~ii~De~y~~~~~~~~~ 213 (397)
T PRK07568 135 KIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKH-DLFLISDEVYREFVYDGLK 213 (397)
T ss_pred EEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHC-CcEEEEeccchhcccCCCC
Confidence 999999864445443 67999999988899999999999999999999999999999999 9999999999998877654
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
..++..+...+++++++.|+||.+|++|+|+||++++ +++++.+...... .++++.+.|.++..+++. .+.++++
T Consensus 214 ~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~---~~~~~~~ 289 (397)
T PRK07568 214 YTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQA-RLSPPTLEQIGAAALLDT---PESYFDE 289 (397)
T ss_pred ccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhhC---CHHHHHH
Confidence 5566665544678999999999999899999999984 6788877654432 457899999999999975 3678889
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc-----cCEEeccCCCC
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-----AQVALVPGDAF 315 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~gi~i~~g~~~ 315 (352)
+++.++++++.+.+.|++++++.+..|.+|+++|++++.. +..++.++|.++ .||.+.||..|
T Consensus 290 ~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~------------~~~~~~~~l~~~~~~~~~gv~v~pg~~f 357 (397)
T PRK07568 290 VREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLPVD------------DAEDFAKWLLTDFNYNGETVMVAPASGF 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEecCCC------------CHHHHHHHHHhhcccccceEEEeCchHh
Confidence 9999999999999999988788888889999999999853 677888888763 58999999877
Q ss_pred CC-----CCeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 316 GD-----DTCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 316 ~~-----~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+. ++++||+++.+++++++++++|+++++++..
T Consensus 358 ~~~~~~~~~~iRls~~~~~~~~~~~~~~l~~~l~~~~~ 395 (397)
T PRK07568 358 YATPGLGKNEIRIAYVLNEEDLKRAMEILKEALEKYNK 395 (397)
T ss_pred cCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence 31 3699999988889999999999999987654
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-46 Score=345.64 Aligned_cols=336 Identities=21% Similarity=0.324 Sum_probs=274.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC-CCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS-PGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|+++.|.+++| +.+|+++. ++|+++++++|++|+|+++++..++.+++. +||.|+++.|+|..|...++..
T Consensus 163 ~Y~~s~G~~~lR------eaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~ 236 (534)
T PLN02231 163 AYSHSQGIKGLR------DAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALH 236 (534)
T ss_pred CcCCCCCcHHHH------HHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHc
Confidence 499999999999 99999999 789999999999999999999999999984 7999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
|.+++.++++++++|.+|+++|++++++ +++++++++||||||.+++.+++++|+++|+++ |++||+||+|.+
T Consensus 237 g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~-~l~lI~DEvY~~ 315 (534)
T PLN02231 237 GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQE-GLVLLADEVYQE 315 (534)
T ss_pred CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEccchh
Confidence 9999999998777789999999998864 688999999999999999999999999999999 999999999999
Q ss_pred cccC-CCCccccccCCC------CCCceEEEecccccc-ccccceeEEEEc---ChhHHHHHHhhhhccccCCChHHHHH
Q 018665 155 IIYA-PATHTSFASLPG------MWERTLTVNGFSKAF-AMTGWRLGYIAG---PKHFVAACNKIQSQFTSGASSISQKA 223 (352)
Q Consensus 155 ~~~~-~~~~~~~~~~~~------~~~~~i~~~s~sK~~-g~~g~~~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (352)
+.|+ +....++..+.. ...++++++|+||.+ |++|+|+||+++ ++++++.+.+... ...+++.+.|.+
T Consensus 316 l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~ 394 (534)
T PLN02231 316 NVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVAS-VNLCSNISGQIL 394 (534)
T ss_pred cccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHh-hhcCCChHHHHH
Confidence 9885 334445544321 123689999999976 889999999986 6888888877654 345677888888
Q ss_pred HHHHhcccCC----ChH---HHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeec--CCccCCcccCCCCCCCh
Q 018665 224 GVAALGLGYA----GGE---VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF--STYYGSEAEGFGKIENS 294 (352)
Q Consensus 224 ~~~~l~~~~~----~~~---~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~ 294 (352)
+..+++.... .+. +.+.+++.++++++.+.+.|++++|+.+..|++|+|+|.++ |...-...+.. +....
T Consensus 395 ~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~-~~~~d 473 (534)
T PLN02231 395 ASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAA-KTAPD 473 (534)
T ss_pred HHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhc-CCCcH
Confidence 8888864210 022 23456788999999999999998899999999999999554 43100000000 00123
Q ss_pred HHHHHHHHHccCEEeccCCCCCC---CCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 295 ESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 295 ~~~~~~l~~~~gi~i~~g~~~~~---~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
..++.+|+++.||.+.||+.|+. ..++|+++..+++++++++++|+++++++.
T Consensus 474 ~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~eal~RL~~~~~~~~ 529 (534)
T PLN02231 474 AFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEFHKSFM 529 (534)
T ss_pred HHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 45677788778999999999974 236999998899999999999999887653
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=338.38 Aligned_cols=313 Identities=27% Similarity=0.391 Sum_probs=263.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|+++.|.+++| +++|+++. ++|+++++++|++|+|+++++..+. .++++||+|++++|+|..+...++..|
T Consensus 71 ~Y~~~~G~~~LR------~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~g 143 (409)
T PRK07590 71 GYGPEQGYDFLR------EKIAENDYQARGCDISADEIFISDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVMAG 143 (409)
T ss_pred CCCCCCCCHHHH------HHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHcC
Confidence 588999999999 99999988 8889999999999999999999764 556899999999999999999999999
Q ss_pred Ce-----------EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecc
Q 018665 82 AT-----------PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150 (352)
Q Consensus 82 ~~-----------v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~ 150 (352)
.+ ++.++++.++++..|.++ ++++++++++||||||.+++.+++++|+++|+++ |++||+||
T Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De 216 (409)
T PRK07590 144 RTGEANEDGRYSGIVYLPCTAENNFVPELPE------EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKEN-GSLILFDA 216 (409)
T ss_pred CcccccccccccceeEeecccccCCcccCcc------cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHc-CeEEEEEc
Confidence 87 889998755555555332 5789999999999999999999999999999999 99999999
Q ss_pred cccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHH------------HhhhhccccCCCh
Q 018665 151 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC------------NKIQSQFTSGASS 218 (352)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~------------~~~~~~~~~~~~~ 218 (352)
+|+++.+++....++..++...+++++++||||.+|++|+|+||+++++++++.+ .........+++.
T Consensus 217 ~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 296 (409)
T PRK07590 217 AYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSY 296 (409)
T ss_pred cchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCH
Confidence 9999887664445555554434678999999999999999999999999988732 1111111235788
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHH
Q 018665 219 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLC 298 (352)
Q Consensus 219 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
+.|.++..++... ...++++.++.++++++.+.+.|++. ++.+..+.+|+|+|+++++.. ++.+++
T Consensus 297 ~~q~a~~~~l~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~g~~f~wi~~~~~~-----------~~~~~~ 362 (409)
T PRK07590 297 IVQRAAEAVYSPE--GKAQIKELIDYYMENAKIIREGLESA-GFEVYGGVNAPYIWVKTPDGM-----------SSWDFF 362 (409)
T ss_pred HHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCcceEEEEECCCCC-----------CHHHHH
Confidence 9999998888742 25788889999999999999999987 788888889999999998642 677888
Q ss_pred HHHHHccCEEeccCCCCCC--CCeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 299 RYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 299 ~~l~~~~gi~i~~g~~~~~--~~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
+.+++++||.+.||+.|+. .+++||++..+++++++++++|++++
T Consensus 363 ~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~ 409 (409)
T PRK07590 363 DKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMERIKKAL 409 (409)
T ss_pred HHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHHHHHHHHHHHHhhC
Confidence 8888777999999998864 46999998678899999999998753
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=334.02 Aligned_cols=324 Identities=30% Similarity=0.508 Sum_probs=274.0
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|+++.|..++| +.++++++ ++|+.+++++|++|+|+++++..++.+++++||.|++++|+|..+...++..
T Consensus 64 ~~Y~~~~g~~~lr------~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~ 137 (398)
T PRK08363 64 NYYGPSEGLPELR------EAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFY 137 (398)
T ss_pred CCCCCCCCcHHHH------HHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc
Confidence 3588899999999 99999999 7798899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|..++.++..+++++.+|++++++.++++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.++.+++.
T Consensus 138 g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~li~Deay~~~~~~~~ 216 (398)
T PRK08363 138 GGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEH-DLPVISDEIYDLMTYEGK 216 (398)
T ss_pred CCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CeEEEEhhhhhhhccCCc
Confidence 9998888432235667899999999988899999999999999999999999999999999 999999999998877553
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEc--ChhHHHHHHhhhh---ccccCCChHHHHHHHHHhcccCCCh
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--PKHFVAACNKIQS---QFTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
..++..+.. ..+++++.||||.++++|+|+||+++ ++++++.+..... ....++|.+.|.++.+++.. ..
T Consensus 217 -~~~~~~~~~-~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~ 291 (398)
T PRK08363 217 -HVSPGSLTK-DVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG---PM 291 (398)
T ss_pred -ccCHHHcCc-CCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC---Ch
Confidence 234444443 46799999999999889999999997 6777766654322 12356899999999999975 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
+++++.++.++++++.+.+.|++++++.+..+.+|+++|+++++... .+..+++..++++.||.+.||+.|
T Consensus 292 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~---------~~~~~~~~~~l~~~gV~v~~g~~f 362 (398)
T PRK08363 292 DYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEEGPW---------KDDKEFVLDVLHEAHVLFVHGSGF 362 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEEEEEEEeccCCC---------CCHHHHHHHHHHhCCEEEeCchhh
Confidence 88889999999999999999998878888888999999998875200 045566666655679999999988
Q ss_pred CC--CCeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 316 GD--DTCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 316 ~~--~~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
+. ++++||+++.+++++++++++|++++++.
T Consensus 363 ~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~~~ 395 (398)
T PRK08363 363 GEYGAGHFRLVFLPPVEILEEAMDRFEEFMRER 395 (398)
T ss_pred CCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 64 47999999888899999999999988763
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=309.98 Aligned_cols=322 Identities=27% Similarity=0.480 Sum_probs=287.8
Q ss_pred CCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCe
Q 018665 5 RVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT 83 (352)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~ 83 (352)
|-+.+..++. ++++.++. ++++.++++.|.+++|..-++..+++.|.++||.|++.+|.|+++....+..|.+
T Consensus 57 GY~~~~~~~~------~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~ 130 (388)
T COG1168 57 GYPYGSDELY------AAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRK 130 (388)
T ss_pred CCCCCCHHHH------HHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhcCcE
Confidence 3345555666 99999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccC-CCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 84 PVILPTRI-SENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 84 v~~i~~~~-~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+...|+.+ ++.|.+|.++|++++.+ ++++.++||||||+|.+++.+++.+|.++|.+| |+++|.||.|+++.+.|+.
T Consensus 131 ~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh-~v~VISDEIHaDlv~~g~~ 209 (388)
T COG1168 131 VIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRH-GVRVISDEIHADLVLGGHK 209 (388)
T ss_pred EEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHc-CCEEEeecccccccccCCC
Confidence 99999984 45688899999999975 469999999999999999999999999999999 9999999999999999988
Q ss_pred ccccccCCCC-CCceEEEeccccccccccceeEEEEcCh-hHHHHH-HhhhhccccCCChHHHHHHHHHhcccCCChHHH
Q 018665 162 HTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAAC-NKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 238 (352)
Q Consensus 162 ~~~~~~~~~~-~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (352)
+.++..+... .++.+.+.|.||+|+++|+.+++++.+. ++.+++ +++......++|.++..|..++++. +..|+
T Consensus 210 h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~---G~~WL 286 (388)
T COG1168 210 HIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQ---GEPWL 286 (388)
T ss_pred ccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh---chHHH
Confidence 8887776543 4788999999999999999999998755 443433 4445556678999999999999998 68999
Q ss_pred HHHHHHHHHHHHHHHHHhccc-CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC
Q 018665 239 SKMVKAFRERRDFLVKSFGEL-EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~ 317 (352)
+++...++.+++++.+.+++. |++++..|++.+.+|+++.+.. .+..++.+.++++.+|.+.+|..|+.
T Consensus 287 d~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~----------l~d~~l~~~ll~~akVal~~G~~FG~ 356 (388)
T COG1168 287 DELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELG----------LDDSELAEFLLEEAKVALSPGSTFGE 356 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeeccccC----------CChHHHHHHHHHhhcEeccCCCccCc
Confidence 999999999999999999975 9999999999999999998763 26679999999999999999999986
Q ss_pred --CCeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 318 --DTCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 318 --~~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
.+++|++++++.+-+++++++|+.+++..
T Consensus 357 ~g~gf~RlN~acpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 357 EGSGFVRLNFACPRAILEEALERLKRALKKR 387 (388)
T ss_pred CCCceEEEecCCCHHHHHHHHHHHHHHHhcc
Confidence 46999999999999999999999988754
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=334.11 Aligned_cols=324 Identities=26% Similarity=0.421 Sum_probs=279.3
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|+++.|.+++| ++++++++ ++|+.++++ +|++|+|+++++..++..++++||+|++++|+|..+...++.
T Consensus 61 ~~Y~~~~G~~~lr------~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~ 134 (395)
T PRK08175 61 HGYSTSRGIPRLR------RAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVI 134 (395)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHH
Confidence 3588899999999 99999999 779888886 899999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 156 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~ 156 (352)
.|.+++.++++++++ +.+.++++++ ++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|+++.
T Consensus 135 ~g~~~~~v~~~~~~~---~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~-~i~ii~De~y~~l~ 210 (395)
T PRK08175 135 AGAQVRSVPLVEGVD---FFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRY-DVLVVHDLAYADIV 210 (395)
T ss_pred cCCeEEEEecccCCC---cHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEecchHhhc
Confidence 999999999875443 4677777775 4788999999999999999999999999999999 99999999999988
Q ss_pred cCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChH
Q 018665 157 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
+++....++..++...++++++.|+||.+|++|+|+||+++++++++.+.+.......+++++.|.++..++.. ...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~ 287 (395)
T PRK08175 211 YDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG---DQQ 287 (395)
T ss_pred cCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC---cHH
Confidence 86655556555543346788999999999999999999999999999998877666677888889988888865 256
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
+++.++..++++++.+.+.|+++ ++.+..+++|+|+|+++++... ..++.++++.++++.||.+.||..|+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~~g~~i~i~l~~~~~--------~~~~~~~~~~l~~~~gv~v~p~~~f~ 358 (395)
T PRK08175 288 CVRDIAEQYKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEPYA--------AMGSLEFAKKLLNEAKVCVSPGIGFG 358 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCEEEEEEEECCcccC--------CCCHHHHHHHHHHhCCEEEeCchhhC
Confidence 78888999999999999999988 8888788899999999986421 01467888888877799999998875
Q ss_pred C--CCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 317 D--DTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 317 ~--~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
. ++++||+++.+++.+++++++|+++++++.
T Consensus 359 ~~~~~~lRis~~~~~~~~~~al~~l~~~l~~~~ 391 (395)
T PRK08175 359 DYGDTHVRFALIENRDRIRQAIRGIKAMFRADG 391 (395)
T ss_pred cCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 4 469999998888999999999999998654
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=329.53 Aligned_cols=308 Identities=22% Similarity=0.335 Sum_probs=260.8
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~ 78 (352)
..|+++.|..++| +++|+++. ++|+++++++|++|+|+++++..++.+++ ++||.|+++.|+|..+...++
T Consensus 54 ~~Y~~~~G~~~lr------~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~ 127 (374)
T PRK05839 54 NKYPKSAGEESLR------EAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAI 127 (374)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHH
Confidence 5688889999999 99999999 77988999999999999999998888764 578999999999999999999
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
..|++++.++++.++++.+|+++.+ + ++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++.+.
T Consensus 128 ~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~-~~~ii~DE~Y~~~~~~ 203 (374)
T PRK05839 128 ASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKH-DFILINDECYSEIYEN 203 (374)
T ss_pred hcCCEEEEeecccccCCcCCcchhh--h-ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHc-CCEEEeccchhhcccC
Confidence 9999999999976666777765432 2 4689999999999999999999999999999999 9999999999987543
Q ss_pred CCCccccccC-----CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCC
Q 018665 159 PATHTSFASL-----PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 159 ~~~~~~~~~~-----~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
+ ..+++... ...++++++++||||.+|++|+|+||+++++++++.+.........+.+.+.|.++..++..
T Consensus 204 ~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--- 279 (374)
T PRK05839 204 T-PPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLD--- 279 (374)
T ss_pred C-CCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc---
Confidence 3 22333221 12357999999999999999999999999999999988776555567888889888888864
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
.+++++.++.++++++.+.+.|. +. .|++|+|+|++++ +..+++++|++++||.+.||.
T Consensus 280 -~~~~~~~~~~~~~~~~~~~~~l~----~~--~p~gg~fi~~~~~--------------~~~~~~~~l~~~~gi~v~pg~ 338 (374)
T PRK05839 280 -DEHAEFFRNIYAKNLKLAREILG----IT--IPPATFYVWLPVD--------------NDEEFTKKLYQNEGIKVLPGS 338 (374)
T ss_pred -chHHHHHHHHHHHHHHHHHHhcC----CC--CCCeeEEEEEeCC--------------ChHHHHHHHHHHCCEEEeCch
Confidence 67788889999999988888763 33 6789999999986 456888888876799999998
Q ss_pred CCCC----CCeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 314 AFGD----DTCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 314 ~~~~----~~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
.|+. ++++||+++.+++++++++++|+++++
T Consensus 339 ~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 339 FLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred hhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence 7764 489999998888999999999999875
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=304.85 Aligned_cols=329 Identities=23% Similarity=0.390 Sum_probs=291.9
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
+.|+|..|....| +++|+|+. +...++.+++|++|+|.++|++.++.+|.++|.+||+|.|+|+.|...++..
T Consensus 97 N~Yaps~G~~~AR------~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~ 170 (447)
T KOG0259|consen 97 NGYAPSVGILPAR------RAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYS 170 (447)
T ss_pred CCcCCccccHHHH------HHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhc
Confidence 5699999999999 99999988 7777889999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+|+++++-++.+|++|++.++..+++++.++++.||+||+|.+++.+-+++|++.|+++ ++++|.||+|.++.|.+.
T Consensus 171 ~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~kl-gi~vIaDEVY~~~vfg~~ 249 (447)
T KOG0259|consen 171 GLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKL-GIMVIADEVYGHTVFGDK 249 (447)
T ss_pred CceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHh-CCeEEehhhcceeecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999988
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcCh--------hHHHHHHhhhhccccCCChHHHHHHHHHhcccC
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--------HFVAACNKIQSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
...++.++... --++.++++||-+=.||||+||++.+. ..+..+..... -+.+++++.|.|+-..|+.-
T Consensus 250 pfvpmg~fssi-VPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~-~~~~p~TiiQ~AlP~IL~kT- 326 (447)
T KOG0259|consen 250 PFVPMGKFSSI-VPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLD-IIPGPATIIQGALPDILEKT- 326 (447)
T ss_pred Cccchhhcccc-CceEeecccccccccCCceeeeEEEecccccccchHHHHHHHHHHh-ccCCccHhHHHHhHHHHHhC-
Confidence 88787777652 456889999999988999999998643 23444554433 34689999999999999873
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCce-ecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~ 311 (352)
..+++....+.++.+.+.-.+.|+.+|++. ...|++.+|+|+.+.-. ... ...+..+++..|.++..+.+.|
T Consensus 327 -p~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s---~~~---~~~dD~dFc~kL~~Eesv~~LP 399 (447)
T KOG0259|consen 327 -PEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLS---LFP---DIEDDVDFCQKLAREESVICLP 399 (447)
T ss_pred -hHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchh---hhc---cccccHHHHHHHhhhcceEEec
Confidence 368889999999999999999999999999 66899999999876421 011 1137889999999888999999
Q ss_pred CCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 312 GDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 312 g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
|..|+.++|+|+++..+.+.+++++++|+++..+-.
T Consensus 400 G~af~~~nw~Ri~i~~~~~~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 400 GQAFGLKNWLRIVITVEEEMLEEAFSRIKEFCDRHS 435 (447)
T ss_pred cccccCCCeEEEEEccChHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999987654
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=335.32 Aligned_cols=311 Identities=20% Similarity=0.263 Sum_probs=267.3
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
..|+++.|..++| +.+++++++.. ..+++|++|+|+++++..++.+++++||.|++++|+|..+...++..|
T Consensus 115 ~~Y~~~~g~~~lr------~~ia~~~~~~~--~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g 186 (431)
T PRK15481 115 RLYGDAPVSPELH------AWAARWLRDDC--PVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAG 186 (431)
T ss_pred hhcCCcCCCHHHH------HHHHHHHhhcc--CCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC
Confidence 3588899999999 99999998321 135699999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEc-CCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILC-SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~-~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
.+++.++++++ ++|+++|++++++++++++++ +||||||.+++.+++++|+++|+++++++||+||+|.++.+.+.
T Consensus 187 ~~~~~v~~~~~---g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~ 263 (431)
T PRK15481 187 FSASPVSVDAE---GMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY 263 (431)
T ss_pred CeEEeeccCCC---CCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC
Confidence 99999998632 379999999998788888886 99999999999999999999999876899999999999875432
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
.+... .+.+++++++||||.+| +|+|+||+++++++++.+.........+.|.+.|.++..+++++.. .+++++
T Consensus 264 --~~~~~--~~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~l~~ 337 (431)
T PRK15481 264 --HSVIP--QTTQRWALIRSVSKALG-PDLRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEY-QARLAQ 337 (431)
T ss_pred --CCCCc--CCCCCEEEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccH-HHHHHH
Confidence 22222 23468999999999999 9999999999999999987665555556899999999999987432 466888
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC---
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--- 317 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--- 317 (352)
.++.++++++.+.+.|++. ++.+..|++|+|+|++++. +..++++.|.+ .||.+.||..|+.
T Consensus 338 ~~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~~-------------~~~~~~~~l~~-~gV~v~pg~~f~~~~~ 402 (431)
T PRK15481 338 ARLFYAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLDT-------------DSQATALTLAK-SGWLVREGEAFGVSAP 402 (431)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCccccCCCeEEEEEECCC-------------CHHHHHHHHHH-CCcEEecCCccccCCC
Confidence 9999999999999999987 8888789999999999974 46788888876 5999999998864
Q ss_pred CCeEEEEeec-CHHHHHHHHHHHHHHHh
Q 018665 318 DTCIRISYAA-SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 318 ~~~iRi~~~~-~~~~l~~~~~~l~~~~~ 344 (352)
.+++||+++. +++++++++++|++++.
T Consensus 403 ~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 403 SHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 3589999998 88999999999999874
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=325.64 Aligned_cols=329 Identities=29% Similarity=0.439 Sum_probs=265.2
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|+++.|.+++| +++|+++. +....+++++|++++|+++++..++.+++++||+|++++|+|..+...++..
T Consensus 66 ~~Y~~~~G~~~lr------~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~ 139 (404)
T PRK09265 66 QGYSDSKGLFSAR------KAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLS 139 (404)
T ss_pred CCCCCCCCcHHHH------HHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHc
Confidence 3588899999999 99999998 4444688999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++.+.++++.+|++++++.++++++++++++|+||||.+++.+++++|+++|+++ |+++|+||+|.++.+++.
T Consensus 140 g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~ 218 (404)
T PRK09265 140 GGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQH-NLIIFADEIYDKILYDGA 218 (404)
T ss_pred CCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEehhhhhccCCCC
Confidence 9999999876556677999999999988899999999999999999999999999999999 999999999999888765
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEc--Chh----HHHHHHhhhhccccCCChHHHHHHHHHhcccCCC
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
...++..+.. ..+++++.|+||.+|++|+|+||+++ ++. +++.+... .....++|.+.|.++.+++.....
T Consensus 219 ~~~~~~~~~~-~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~- 295 (404)
T PRK09265 219 VHISIASLAP-DLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQS- 295 (404)
T ss_pred CcCCHHHcCC-CceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchh-
Confidence 5556555543 24689999999999889999999995 444 33333322 223456889999999999964110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~ 314 (352)
.....+..+.+.++++.+.+.|++++++.+..|.+|+|+|++++.... . ..+..+....++++.||.+.||..
T Consensus 296 ~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~---~----~~~~~~~~~~~l~~~gv~v~pg~~ 368 (404)
T PRK09265 296 INELILPGGRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVY---P----IHDDEQFVLDLLLQEKVLLVQGTG 368 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEeccccc---C----CCCHHHHHHHHHHhCCEEEECchh
Confidence 111222234677788899999988888888889999999999875210 0 003344444455566999999998
Q ss_pred CC--CCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 315 FG--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 315 ~~--~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
|+ .++++|++++.+++++++++++|+++++.+.
T Consensus 369 F~~~~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~~~ 403 (404)
T PRK09265 369 FNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSGYR 403 (404)
T ss_pred hCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhc
Confidence 85 3579999997799999999999999987653
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=322.51 Aligned_cols=312 Identities=27% Similarity=0.387 Sum_probs=254.8
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+|+.|.+++| +++|+++.+.+ +++++|++|+|+++++..+ ..++.+||+|++++|+|..+...++..|.
T Consensus 70 ~Y~p~~g~~~lr------~aia~~~~~~~--~~~d~I~it~Ga~~al~~l-~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~ 140 (402)
T TIGR03542 70 GYGPEQGYPFLR------EAIAENDYRGR--IDPEEIFISDGAKCDVFRL-QSLFGSDNTVAVQDPVYPAYVDSNVMAGR 140 (402)
T ss_pred CCCCCCCCHHHH------HHHHHHHHhcC--CCHHHEEECCCcHHHHHHH-HHhcCCCCEEEEeCCCCcchHHHHHHcCC
Confidence 488999999999 99999875322 6889999999999999976 45568899999999999999999999999
Q ss_pred -----------eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 83 -----------TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 83 -----------~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
+++.++.+.++++..|.++ .++++++++++||||||.+++.+++++|+++|+++ |++||+||+
T Consensus 141 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~ 214 (402)
T TIGR03542 141 AGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEH-GSLILFDAA 214 (402)
T ss_pred ccccccccccceEEEeecchhhCCCCCccc-----cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CeEEEEEch
Confidence 9999988655555555432 14789999999999999999999999999999999 999999999
Q ss_pred ccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHH--------HHHHhhhhccccCCChHHHHH
Q 018665 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV--------AACNKIQSQFTSGASSISQKA 223 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 223 (352)
|.++.+++..+.++..++...+++++++||||.+|++|+|+||++++++++ ..+.........+++.+.|.+
T Consensus 215 y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~ 294 (402)
T TIGR03542 215 YSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRA 294 (402)
T ss_pred hhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHH
Confidence 999877654344444554434688999999999999999999999998876 222221212233578899998
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 224 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
+..++.... ..+..+.++.++++++.+.+.|++. ++.+..+.+|+|+|+++++.. ++.++++.|++
T Consensus 295 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~v~l~~~~-----------~~~~l~~~l~~ 360 (402)
T TIGR03542 295 AEAAYAGEG--LQPILEAISYYMENARILRKALEAA-GFKVYGGEHAPYLWVKTPEGI-----------SSWDFFDFLLY 360 (402)
T ss_pred HHHHHcCcc--hhHHHHHHHHHHHHHHHHHHHHHhc-CceecCCCceeEEEEECCCCC-----------CHHHHHHHHHH
Confidence 888887532 2456677788999999999999987 788877788999999998642 67789999887
Q ss_pred ccCEEeccCCCCCC--CCeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 304 KAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 304 ~~gi~i~~g~~~~~--~~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
+.||.+.||..|+. ++++||++..+++++++++++|++++
T Consensus 361 ~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~ 402 (402)
T TIGR03542 361 QYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVEACERIKEAL 402 (402)
T ss_pred hCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHhhC
Confidence 77999999998764 47999998778899999999998763
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=318.39 Aligned_cols=313 Identities=28% Similarity=0.465 Sum_probs=266.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|++..|..++| +.++++++ .++..+++++|++++|+++++..++.+++++||.|++++|+|..+...++..
T Consensus 67 ~~y~~~~g~~~lr------~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~ 140 (394)
T PRK06836 67 HGYMPNAGYPEVR------EAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNH 140 (394)
T ss_pred ccCCCCCCCHHHH------HHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc
Confidence 3588889999999 99999999 7788889999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh------CCCEEEEecccccc
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEH 154 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~------~~~~~livD~~~~~ 154 (352)
|.+++.++++++ ++.+|+++++++++++++++++++|+||||.++|.+++++|+++|++ + |+++|+||+|.+
T Consensus 141 g~~v~~v~~~~~-~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~-~~~ii~De~y~~ 218 (394)
T PRK06836 141 GGKLVVVPTDTD-TFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGR-PIYLISDEPYRE 218 (394)
T ss_pred CCEEEEEecCCc-cCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCC-CeEEEEeccccc
Confidence 999999998753 46799999999998899999999999999999999999999999999 9 999999999999
Q ss_pred cccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHH---HHh---hhhc-cccCCChHHHHHHHHH
Q 018665 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA---CNK---IQSQ-FTSGASSISQKAGVAA 227 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~---~~~---~~~~-~~~~~~~~~~~~~~~~ 227 (352)
+.+.+....++.. ..+++++++|+||.+|++|+|+||+++++++.+. ... .... ....++.+.|.++...
T Consensus 219 ~~~~~~~~~~~~~---~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 295 (394)
T PRK06836 219 IVYDGAEVPYIFK---YYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKC 295 (394)
T ss_pred cccCCCCCCChHH---ccCcEEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHH
Confidence 8776543333322 2468999999999999999999999998876332 111 1111 1135778889888888
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
+.. .. .+..++++++.+.+.|+++ |+.+..+.+|+++|+.+|.. +..++++.|.+ +||
T Consensus 296 l~~----~~----~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~~------------~~~~~~~~l~~-~gv 353 (394)
T PRK06836 296 LDA----TV----DVSIYKRNRDLLYDGLTEL-GFECVKPQGAFYLFPKSPEE------------DDVAFCEKAKK-HNL 353 (394)
T ss_pred hCC----hH----HHHHHHHHHHHHHHHHHhC-CCEeecCCceEEEEEeCCCC------------CHHHHHHHHHh-CCE
Confidence 874 11 2456788889999999988 88888889999999998763 67788877765 599
Q ss_pred EeccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 308 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
.+.||..|+.++++||+++.+++++++++++|+++++++.
T Consensus 354 ~v~~g~~f~~~~~iRi~~~~~~~~~~~~i~~l~~~l~~~~ 393 (394)
T PRK06836 354 LLVPGSGFGCPGYFRLSYCVDTETIERSLPAFEKLAKEYK 393 (394)
T ss_pred EEECchhcCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999887899999999899999999999999998764
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=324.88 Aligned_cols=329 Identities=23% Similarity=0.331 Sum_probs=260.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hc-CCCC-C--CCcEEEeCChHHHHHHHHHH-----hcCCCCEEEecCCCCCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-EN-GLSY-T--PDQILVSNGAKQSILQAVLA-----VCSPGDEVIIPAPFWVS 72 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~-~~~~-~--~~~i~~~~g~~~a~~~~~~~-----l~~~~~~vl~~~~~~~~ 72 (352)
+|+++.|..++| +++++++. +. +... . .++|++|+|+++++..++.+ ++++||+|++++|+|..
T Consensus 129 ~Y~~~~g~~~lr------eaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~ 202 (527)
T PRK09275 129 NYPVPDRMLKHT------EKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTP 202 (527)
T ss_pred CCCCCCCCHHHH------HHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHH
Confidence 599999999999 99999665 42 3222 2 34999999999999999886 68999999999999999
Q ss_pred hHHHHHhcC--CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHH--hCCCEEEEe
Q 018665 73 YPEMARIAD--ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA--KHPRLLVLS 148 (352)
Q Consensus 73 ~~~~~~~~g--~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~--~~~~~~liv 148 (352)
|...++..| .+++.++.+++++|.+|+++++++++++++++++++||||||.+++.+++++|+++|+ ++ |++||+
T Consensus 203 Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~-~l~II~ 281 (527)
T PRK09275 203 YLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRP-DLMIIT 281 (527)
T ss_pred HHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCC-CcEEEE
Confidence 999888775 5555555555567999999999999889999999999999999999999999999995 45 899999
Q ss_pred cccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChh-----HHHHH------------------
Q 018665 149 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-----FVAAC------------------ 205 (352)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-----~~~~~------------------ 205 (352)
||+|..+.+ ...++... ..++++++.|+||.+|++|+|+||++++++ +++.+
T Consensus 282 DEvY~~f~~---~~~s~~~~--~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~ 356 (527)
T PRK09275 282 DDVYGTFVD---DFRSLFAV--LPYNTILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTD 356 (527)
T ss_pred CCCChhhcc---cccCHHHh--CCCCEEEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCC
Confidence 999998764 12343332 246899999999999999999999999876 33322
Q ss_pred --------------HhhhhccccCCChHHHHHH-----HHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC
Q 018665 206 --------------NKIQSQFTSGASSISQKAG-----VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266 (352)
Q Consensus 206 --------------~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~ 266 (352)
+......+.+.+++.|.++ .++++. .+.+.++.++.+++|++.+.+.|. . ++...+
T Consensus 357 p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~---~~~~~~~~~~~~~~Rr~~l~~~Lg-~-~~~~~~ 431 (527)
T PRK09275 357 PEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDE---EDAYKKAMKDIIRRRYKALYEGLG-L-PEPEDP 431 (527)
T ss_pred cchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---chHHHHHHHHHHHHHHHHHHHHcC-C-CCcCCC
Confidence 4555566778888888862 344553 357788899999999999999883 2 344457
Q ss_pred CCCceEEEeecCCcc----CCcccCCC-CCCChHHHHHHHHHccCEEeccCCCCCC-CCeEEEEeec-CHHHHHHHHHHH
Q 018665 267 PQGAFYLFIDFSTYY----GSEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAA-SLTTLQAAVERI 339 (352)
Q Consensus 267 ~~~g~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~l~~~~gi~i~~g~~~~~-~~~iRi~~~~-~~~~l~~~~~~l 339 (352)
+.+++|+|++++... +..+..+- ...+..+++.+|+++.||.+.||+.|+. ++++|+|++. +++++.++.++|
T Consensus 432 p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~~~~~~~~~~~~rl 511 (527)
T PRK09275 432 NNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLANLNEEDYAKIGKAI 511 (527)
T ss_pred CCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEecCCHHHHHHHHHHH
Confidence 899999999987531 11110000 0015789999999999999999999975 5789999996 889999999999
Q ss_pred HHHHhhhCC
Q 018665 340 KKGLLTLRP 348 (352)
Q Consensus 340 ~~~~~~~~~ 348 (352)
++++.++..
T Consensus 512 ~~~l~~y~~ 520 (527)
T PRK09275 512 RKLLDEYYE 520 (527)
T ss_pred HHHHHHHHH
Confidence 999987754
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=315.94 Aligned_cols=300 Identities=26% Similarity=0.376 Sum_probs=255.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCC-CCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLS-YTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~-~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
.|+++.|.+++| +++++++. ++|++ +++++|++|+|+++++..+...+ +++||.|++++|+|..+...++.
T Consensus 57 ~Y~~~~G~~~lr------~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~ 130 (364)
T PRK07865 57 GYPTTAGTPELR------EAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARL 130 (364)
T ss_pred CCCCccCCHHHH------HHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHh
Confidence 588889999999 99999999 77886 88999999999999999888887 78999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.++. ++++.. ++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.++.+++
T Consensus 131 ~g~~~~~~~~---------~~~l~~---~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~ 197 (364)
T PRK07865 131 AGATVVRADS---------LTELGP---QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARER-GAVVASDECYLELGWDA 197 (364)
T ss_pred cCCEEEecCC---------hhhCCc---ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhhhccCC
Confidence 9999888752 233322 5789999999999999999999999999999999 99999999999887755
Q ss_pred CCccccccC--CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHH
Q 018665 160 ATHTSFASL--PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 160 ~~~~~~~~~--~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
.....+... +...+++++++|+||.+|++|+|+||+++++++++.+.........+++++.|.++..++.. .++
T Consensus 198 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~ 273 (364)
T PRK07865 198 EPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGD----DAH 273 (364)
T ss_pred CCCccccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC----HHH
Confidence 321111111 12357899999999999989999999999999999988776666677899999999999875 677
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-
Q 018665 238 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG- 316 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~- 316 (352)
.++.++.++++++.+.+.|++. |+.+..+++|+++|+.++. +..++.+.|.+ .||.+.||..|+
T Consensus 274 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~-~gv~v~pg~~f~~ 338 (364)
T PRK07865 274 VREQRERYARRRAVLRPALEAA-GFRVDHSEAGLYLWATRGE-------------DCWDTVAWLAE-RGILVAPGDFYGP 338 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCcccCCCccEEEEEeCCC-------------CHHHHHHHHHH-CCEEEeCccccCc
Confidence 8888999999999999999987 8888888899999998743 56677777765 499999998775
Q ss_pred -CCCeEEEEeecCHHHHHHHHHHHH
Q 018665 317 -DDTCIRISYAASLTTLQAAVERIK 340 (352)
Q Consensus 317 -~~~~iRi~~~~~~~~l~~~~~~l~ 340 (352)
.++++||+++.+++++++++++|+
T Consensus 339 ~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 339 AGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred CCCCEEEEEecCCHHHHHHHHHHhh
Confidence 357999999888899999999885
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=326.97 Aligned_cols=315 Identities=30% Similarity=0.521 Sum_probs=275.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~ 78 (352)
..|++..|.+++| +++|++++ +.+++.+++ +|++++|+++++..+...+ .+++++|++++|+|..+...++
T Consensus 38 ~~Y~~~~g~~~lr------~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~ 111 (363)
T PF00155_consen 38 LGYPPPQGYPELR------EAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAAR 111 (363)
T ss_dssp TSSTCTTHHHHHH------HHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHH
T ss_pred ccCCCchhhHHHH------HHHHHHhhhccCcccccceEEEEecccccchhhhhhcccccccccceecCCcccccccccc
Confidence 4689999999999 99999999 899999999 9999999999999999999 7899999999999999999999
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
..|.+++.+++..+.++.+|+++|++.+++ +++++++++|+||||..++.+++++|+++|+++ |+++|+||+|
T Consensus 112 ~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~-~~~ii~De~y 190 (363)
T PF00155_consen 112 LLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREY-NIIIIVDEAY 190 (363)
T ss_dssp HTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHT-TSEEEEEETT
T ss_pred ccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhccc-ccceeeeece
Confidence 999999999988778888999999999976 578999999999999999999999999999999 9999999999
Q ss_pred cccccCCCCccc-cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhccc
Q 018665 153 EHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 153 ~~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 231 (352)
+++.+......+ ...... ..+++++.|+||.+|++|+|+||+++++++++.++.....+.. +.+.+.++..++...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~ 267 (363)
T PF00155_consen 191 SDLIFGDPDFGPIRSLLDE-DDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQRSGLS--SSPMQAAAAAALSDP 267 (363)
T ss_dssp TTGBSSSSHTHHHHGHHTT-TSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHH
T ss_pred eccccCCCccCcccccccc-cccceeeeeccccccccccccccccchhhhhhhhhhccccccc--cchhhHHHHHhhhcc
Confidence 998876542222 222222 4568999999999999999999999999999999988776653 888888888888873
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc
Q 018665 232 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~ 311 (352)
....++++++++.++++++.+.+.|++. ++.+..+++|+++|+.++.. ++.+++++|+++.||.+.|
T Consensus 268 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~~~~gi~v~p 334 (363)
T PF00155_consen 268 ELVEKWLEELRERLRENRDLLREALEEI-GITVLPPEAGFFLWVRLDPN------------DAEELAQELLEEYGILVRP 334 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHSBSSEEEEEESHH------------HHHHHHHHHHHHHTEEEEE
T ss_pred cccccccccchhhHHHHHHHHHHHHHHh-hhheeeccCccEEEEEcccc------------hHHHHHHHHHHhCCEEEEe
Confidence 2112388899999999999999999988 99999889999999998753 5789999999887999999
Q ss_pred CCCCCCCCeEEEEe-ecCHHHHHHHHHHH
Q 018665 312 GDAFGDDTCIRISY-AASLTTLQAAVERI 339 (352)
Q Consensus 312 g~~~~~~~~iRi~~-~~~~~~l~~~~~~l 339 (352)
|..|+.++++|+++ ..+++++++++++|
T Consensus 335 g~~~~~~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 335 GSYFGVPGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp GGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence 99998899999999 44999999999886
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=310.43 Aligned_cols=299 Identities=26% Similarity=0.375 Sum_probs=253.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCC-CCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLS-YTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~-~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
.|.++.|..++| +++++++. +++++ +++++|++|+|+++++..++..+ .++||.|++++|+|..+...++.
T Consensus 51 ~Y~~~~G~~~lr------~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~ 124 (357)
T TIGR03539 51 GYPQTWGTPELR------EAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALL 124 (357)
T ss_pred CCCcccCCHHHH------HHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHh
Confidence 588889999999 99999999 77886 89999999999999999988887 79999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.++ +++++. .++++++++++|+||||.+++.+++++|+++|+++ |+++|+||+|.++.+.+
T Consensus 125 ~g~~~~~v~---------~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~ 191 (357)
T TIGR03539 125 AGATPVAAD---------DPTELD---PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARER-GAVVASDECYLELGWEG 191 (357)
T ss_pred cCCEEeccC---------ChhhcC---ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHc-CeEEEEecchhhhccCC
Confidence 999988774 223332 24789999999999999999999999999999999 99999999999887755
Q ss_pred CCcccccc--CCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHH
Q 018665 160 ATHTSFAS--LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 160 ~~~~~~~~--~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
.....+.. .+...+++++++|+||.+|++|+|+||+++++++++.+.+.......+++.+.|.++.++++. ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~ 267 (357)
T TIGR03539 192 RPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGD----DGH 267 (357)
T ss_pred CCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCC----HHH
Confidence 32111111 122356899999999999889999999999999999988776655677899999999999874 567
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC
Q 018665 238 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~ 317 (352)
.++.+..++++++.+.+.|++. |+.+..+.+|+++|++++. +..++.+.|.+ .||.+.||..|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~L~~~-g~~~~~p~~~~~~~~~~~~-------------~~~~~~~~l~~-~gV~v~pg~~f~~ 332 (357)
T TIGR03539 268 VAEQKARYAARRAQLKPALEKA-GFRIDHSEAGLYLWATRGE-------------DAWDTVDRLAE-LGILVAPGDFYGP 332 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCCcCCCccEEEEEECCC-------------CHHHHHHHHHh-CCEEECCccccCC
Confidence 7888889999999999999986 8888888999999998753 56678888765 5999999987753
Q ss_pred --CCeEEEEeecCHHHHHHHHHHH
Q 018665 318 --DTCIRISYAASLTTLQAAVERI 339 (352)
Q Consensus 318 --~~~iRi~~~~~~~~l~~~~~~l 339 (352)
++++||+++.+++++++++++|
T Consensus 333 ~~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 333 AGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred CCCCeEEEEecCCHHHHHHHHHhh
Confidence 4799999999889999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=319.11 Aligned_cols=313 Identities=16% Similarity=0.149 Sum_probs=253.0
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEE--EeCChHHHHHHHHH---HhcCCCCEEEecCCCCCChHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQIL--VSNGAKQSILQAVL---AVCSPGDEVIIPAPFWVSYPE 75 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~--~~~g~~~a~~~~~~---~l~~~~~~vl~~~~~~~~~~~ 75 (352)
..|+++.|.+++| +++++++. +.+..+++++|. .|.|+++++..++. +++++||+|++++|+|+.|..
T Consensus 66 ~~Y~~~~G~~~lR------~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~ 139 (404)
T PTZ00376 66 KEYLPIEGLQSFI------EAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVN 139 (404)
T ss_pred CCCCCCCCCHHHH------HHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHH
Confidence 4699999999999 99999997 555567888998 58999999987765 568999999999999999999
Q ss_pred HHHhcCCeEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 76 MARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 76 ~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
.++..|.+++.+++.+++++++|++.+++.++ ++++++++++||||||.+++.+++++|+++|++| +++||+||+|
T Consensus 140 ~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y 218 (404)
T PTZ00376 140 IFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRK-NLIPFFDMAY 218 (404)
T ss_pred HHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEehhh
Confidence 99999999999999544567899999999885 3456777899999999999999999999999999 9999999999
Q ss_pred cccccCCC--CccccccCCCCCCceEEEeccccccccccceeEEE---EcChhHHHHH----HhhhhccccCCChHHHHH
Q 018665 153 EHIIYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI---AGPKHFVAAC----NKIQSQFTSGASSISQKA 223 (352)
Q Consensus 153 ~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 223 (352)
.++.+.+. ...++..+....++++++.||||.++++|+|+||+ ++++++++.+ .+.......+.+.+.|.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~ 298 (404)
T PTZ00376 219 QGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARI 298 (404)
T ss_pred cCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHH
Confidence 99887541 12233333333468999999999999999999998 5787755544 333333334567789999
Q ss_pred HHHHhcccCCCh---HHHHHHHHHHHHHHHHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHH
Q 018665 224 GVAALGLGYAGG---EVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL 297 (352)
Q Consensus 224 ~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (352)
+..+++++...+ +.+++.+++++++++.+.+.|+++. ++.+..+++|+|+|++++ .++
T Consensus 299 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~----------------~~~ 362 (404)
T PTZ00376 299 ADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLT----------------KEQ 362 (404)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCC----------------HHH
Confidence 999997621111 2355667788999999999998862 355667899999999753 467
Q ss_pred HHHHHHccCEEeccCCCCCCCCeEEEEee-cCHHHHHHHHHHHHHHHhh
Q 018665 298 CRYLLDKAQVALVPGDAFGDDTCIRISYA-ASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 298 ~~~l~~~~gi~i~~g~~~~~~~~iRi~~~-~~~~~l~~~~~~l~~~~~~ 345 (352)
+++|.+++||.+.||+ |++++ .+.+++++++++|++++..
T Consensus 363 ~~~L~~~~~v~v~p~~--------Ris~~~~~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 363 VERLIEKYHIYLLDNG--------RISVAGLTSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred HHHHHHhCCEeecCCC--------eEEEeccCHHhHHHHHHHHHHHHhc
Confidence 8889988899999972 99998 4889999999999998753
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=315.67 Aligned_cols=330 Identities=23% Similarity=0.343 Sum_probs=255.1
Q ss_pred ccCCCCCChhhhccchhhHHHHH-HHH-hcCCC-CCCC--cEEEeCChHHHHHHHHHH-----hcCCCCEEEecCCCCCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVI-NLK-ENGLS-YTPD--QILVSNGAKQSILQAVLA-----VCSPGDEVIIPAPFWVS 72 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~-~~~-~~~~~-~~~~--~i~~~~g~~~a~~~~~~~-----l~~~~~~vl~~~~~~~~ 72 (352)
+|+++.+..+++ +++++ ++. +++.. ..++ +|++|+|+++++..++.+ ++++||+|++++|+|..
T Consensus 123 ~Y~~p~g~~~~~------e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~ 196 (521)
T TIGR03801 123 NYPVPDRMLPHS------EKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTP 196 (521)
T ss_pred CCCCCCCCHHHH------HHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHH
Confidence 577778888888 77774 656 44433 3334 899999999999998887 68999999999999999
Q ss_pred hHHHHHhc--CCeEEEecccCCCC-----cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-CCE
Q 018665 73 YPEMARIA--DATPVILPTRISEN-----FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRL 144 (352)
Q Consensus 73 ~~~~~~~~--g~~v~~i~~~~~~~-----~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~ 144 (352)
|...++.. |.+++.++.+.+.+ |.+|+++++++++++++++++++||||||.+++.+++++|+++|+++ +|+
T Consensus 197 y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l 276 (521)
T TIGR03801 197 YLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDL 276 (521)
T ss_pred HHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCe
Confidence 99987765 67777777764333 88999999998888999999999999999999999999999999874 389
Q ss_pred EEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChh-----HHHH---------------
Q 018665 145 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-----FVAA--------------- 204 (352)
Q Consensus 145 ~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-----~~~~--------------- 204 (352)
+||+||+|+.+.+ ...++... ..++++++.|+||.+|++|+|+||++++++ +++.
T Consensus 277 ~II~DEvY~~f~~---~~~sl~~~--~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~ 351 (521)
T TIGR03801 277 MILTDDVYGTFVD---DFRSLFAE--LPYNTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSS 351 (521)
T ss_pred EEEECCCchhhcc---cccchhhh--CCCCEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhcc
Confidence 9999999998764 22344333 246899999999999999999999998764 2211
Q ss_pred -----------------HHhhhhccccCCChHHHH-----HHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCc
Q 018665 205 -----------------CNKIQSQFTSGASSISQK-----AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 262 (352)
Q Consensus 205 -----------------~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~ 262 (352)
.+......+.+.+++.|. ++.++++. ...+.++.++.+++|++.+.+.| .. .+
T Consensus 352 ~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~---~~~y~~~~~~~~~~R~~~l~~~L-g~-~~ 426 (521)
T TIGR03801 352 LTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDK---ENAYKAETKDICRRREKLLFRGL-GL-PL 426 (521)
T ss_pred ccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHhc-CC-CC
Confidence 133444555677777776 34445543 35788889999999999999998 22 23
Q ss_pred eecCCCCceEEEeecCCcc----CCcccCCC-CCCChHHHHHHHHHccCEEeccCCCCCC-CCeEEEEeec-CHHHHHHH
Q 018665 263 KMSEPQGAFYLFIDFSTYY----GSEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAA-SLTTLQAA 335 (352)
Q Consensus 263 ~~~~~~~g~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~l~~~~gi~i~~g~~~~~-~~~iRi~~~~-~~~~l~~~ 335 (352)
...++.+++|+|+++++.. +..+..+- .-.+..+++.+|+++.||.+.||..|+. .+++|+|++. ++++++++
T Consensus 427 ~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~l~~~~~~~~ 506 (521)
T TIGR03801 427 QEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLANLNEYDYAEI 506 (521)
T ss_pred cCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecCCCHHHHHHH
Confidence 3456889999999997521 00000000 0015678999999999999999999986 4579999995 88999999
Q ss_pred HHHHHHHHhhhCC
Q 018665 336 VERIKKGLLTLRP 348 (352)
Q Consensus 336 ~~~l~~~~~~~~~ 348 (352)
.++|+++++++..
T Consensus 507 ~~rl~~~~~~~~~ 519 (521)
T TIGR03801 507 GRAIRKILDEYYE 519 (521)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=313.89 Aligned_cols=300 Identities=19% Similarity=0.313 Sum_probs=255.6
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCe
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT 83 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~ 83 (352)
|+|+.|..++| +.+|++++ +++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+
T Consensus 60 ~Yp~~g~~~Lr------~aia~~~~-----~~~~~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~ 128 (366)
T PRK01533 60 LYPDGGATTLR------QTIANKLH-----VKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCE 128 (366)
T ss_pred cCCCCCHHHHH------HHHHHHhC-----CCcceEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCE
Confidence 34788999999 99999996 78999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
++.++++ ++.+|++++++.++++++++++++||||||.+++.+++++|+++|+++ ++ +|+||+|.++.+.+...
T Consensus 129 v~~v~~~---~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~-~~-~iiDe~y~~~~~~~~~~- 202 (366)
T PRK01533 129 VKEVALN---NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISEN-TL-IVIDEAYYEYVTAKDFP- 202 (366)
T ss_pred EEEeecC---CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCC-CE-EEEEccHHHhhccccCc-
Confidence 9999985 335899999999988899999999999999999999999999999887 74 66799999876543222
Q ss_pred ccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
+.......++++++++||||.+|++|+|+||+++++++++.+.+... .+++|.+.|.++.++++. .++.++.++
T Consensus 203 ~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~~--~~~~~~~~q~aa~~~l~~----~~~~~~~~~ 276 (366)
T PRK01533 203 ETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRL--PFNVSSLAQKAATIAFGD----DEFIEEIVR 276 (366)
T ss_pred chhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhcC--CCCcCHHHHHHHHHHhCC----HHHHHHHHH
Confidence 22222223579999999999999999999999999999999987653 467999999999999975 678888888
Q ss_pred HHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEE
Q 018665 244 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 323 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi 323 (352)
..+++++++.+.++.+ |+.+..+ .|+|+|++++ ++.++.+.|.++ ||.|++ | ++++||
T Consensus 277 ~~~~~r~~~~~~l~~~-g~~~~~~-~~nf~~~~~~--------------~~~~~~~~l~~~-GI~Vr~---~--~~~iRi 334 (366)
T PRK01533 277 VNTEGLRQYESFCKEN-EIPFYQS-QTNFIFLPVE--------------NGGEIYEACAHA-GFIIRP---F--PNGVRI 334 (366)
T ss_pred HHHHHHHHHHHHHHhC-CCccCCC-cCcEEEEeCC--------------CHHHHHHHHHHC-CcEEcc---C--CCceEE
Confidence 8888999999999887 8887765 5667888875 456788888865 999987 3 689999
Q ss_pred EeecCHHHHHHHHHHHHHHHhhhCCC
Q 018665 324 SYAASLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 324 ~~~~~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
+++.+ ++.+++++.|+++++..+++
T Consensus 335 s~~~~-~~~~~l~~al~~~~~~~~~~ 359 (366)
T PRK01533 335 TVGTR-EQNEGVISVLQQHFENKKRK 359 (366)
T ss_pred eCCCH-HHHHHHHHHHHHHHHhcccc
Confidence 98875 78899999999998877664
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=315.45 Aligned_cols=321 Identities=17% Similarity=0.303 Sum_probs=255.0
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC-----CCCEEEe-cCCCCCChH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS-----PGDEVII-PAPFWVSYP 74 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-----~~~~vl~-~~~~~~~~~ 74 (352)
..|+++.|..++| +++|+++. ++|+.+++++|++|+|+++++..++.++++ +||.|++ ++|+|+.|.
T Consensus 68 ~~Y~~~~G~~~LR------~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~ 141 (416)
T PRK09440 68 GNYDGPQGKDELI------EALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYA 141 (416)
T ss_pred ccCCCCCCCHHHH------HHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhH
Confidence 3688899999999 99999998 789999999999999999999999999985 5789999 699999998
Q ss_pred HHHHhcCC----eEEEecccCCC-CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEec
Q 018665 75 EMARIADA----TPVILPTRISE-NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 75 ~~~~~~g~----~v~~i~~~~~~-~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD 149 (352)
..+...+. ....++++.+. ++.+|+++|+ +.++++++++++||||||.+++.+++++|+++|+++ |++||+|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~D 218 (416)
T PRK09440 142 DAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQH-NIPLLID 218 (416)
T ss_pred HHhhccCceeecccccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHc-CCcEEEe
Confidence 76654332 22233333211 4678999987 456788999999999999999999999999999999 9999999
Q ss_pred ccccccccCCCCccccccC-CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHh
Q 018665 150 EIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAAL 228 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 228 (352)
|+|+.+.. . ..+... +...+++++++|+||. +++|+|+||+++++++++.+.........++|.+.|.++..++
T Consensus 219 e~Y~~~~~-~---~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l 293 (416)
T PRK09440 219 NAYGPPFP-G---IIFSEATPLWNPNIILCMSLSKL-GLPGVRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMI 293 (416)
T ss_pred CCccccCC-C---cchhhcCccccCCeEEEeccccc-CCCcceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 99975321 0 111111 1114789999999996 8899999999999999999988777667789999999999999
Q ss_pred cccCCChHHHHH-HHHHHHHHHHHHHHHhccc-C--CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 229 GLGYAGGEVVSK-MVKAFRERRDFLVKSFGEL-E--GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 229 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
+.+.. ..+..+ ++..++++++.+.+.|++. + ++.+..|++|+|+|+++++.. .+..++.+.|.+
T Consensus 294 ~~~~~-~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~~----------~~~~~~~~~l~~- 361 (416)
T PRK09440 294 ESGDL-LRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDLP----------ITTEELYQRLKA- 361 (416)
T ss_pred ccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCCCC----------CCHHHHHHHHHH-
Confidence 87432 233333 5677788888888887653 3 356668889999999998621 166788888765
Q ss_pred cCEEeccCCCCCC---------CCeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 305 AQVALVPGDAFGD---------DTCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 305 ~gi~i~~g~~~~~---------~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.||.+.||+.|+. .+++||+++.+++++++++++|++++++...
T Consensus 362 ~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~~~~~~ 414 (416)
T PRK09440 362 RGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEEVEKAYA 414 (416)
T ss_pred CCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 5999999988743 2589999988889999999999999987554
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=309.03 Aligned_cols=301 Identities=21% Similarity=0.376 Sum_probs=252.8
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
+| |+.+..++| +++|++++ +++++|++|+|+++++..++.++ .+ ++|+++.|+|..+...++..|.
T Consensus 50 ~Y-~~~~~~~lr------~~ia~~~~-----~~~~~i~it~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~~~~~g~ 115 (354)
T PRK06358 50 EY-PDPDYLELR------KRIASFEQ-----LDLENVILGNGATELIFNIVKVT-KP-KKVLILAPTFAEYERALKAFDA 115 (354)
T ss_pred cC-CCccHHHHH------HHHHHHhC-----CChhhEEECCCHHHHHHHHHHHh-CC-CcEEEecCChHHHHHHHHHcCC
Confidence 46 456788999 99999996 78999999999999999999887 43 6899999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++.++++.+| +++.+.+.++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.++.+++...
T Consensus 116 ~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~ 193 (354)
T PRK06358 116 EIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKR-NIYLIIDEAFMDFLEENETI 193 (354)
T ss_pred eeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhc-CCEEEEeCcccccCCCccch
Confidence 9999998766677888 666666666889999999999999999999999999999999 99999999999988765432
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
..+..+. ..+++++++|+||.+|++|+|+||++++ +.+++.+..... .++.+.+.|.++..+++. .+++++.
T Consensus 194 ~~~~~~~-~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~----~~~~~~~ 266 (354)
T PRK06358 194 SMINYLE-NFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMRE--PWSINTFADLAGQTLLDD----KEYIKKT 266 (354)
T ss_pred hHHHhcc-CCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCC--CCcchHHHHHHHHHHhcc----HHHHHHH
Confidence 2233332 3579999999999999999999999985 678888877654 356899999999999974 5677888
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--CC
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DT 319 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~~ 319 (352)
++.++++++.+.+.|++++++.+..+.+ .|+|++++ +..++++.|.++ ||.+.+|..|.. ++
T Consensus 267 ~~~~~~~r~~l~~~L~~~~~~~~~~~~g-~f~~~~~~--------------~~~~~~~~l~~~-gI~v~~~~~f~~~~~~ 330 (354)
T PRK06358 267 IQWIKEEKDFLYNGLSEFKGIKVYKPSV-NFIFFKLE--------------KPIDLRKELLKK-GILIRSCSNYRGLDEN 330 (354)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEcCCcc-eEEEEEcC--------------chHHHHHHHHHC-CeEEEECCCCCCCCCC
Confidence 9999999999999999887888777655 57888886 346888888875 999999998843 47
Q ss_pred eEEEEeecCHHHHHHHHHHHHHHH
Q 018665 320 CIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 320 ~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
++||++..+ ++.+++++.|++++
T Consensus 331 ~iRls~~~~-~~~~~l~~~l~~~~ 353 (354)
T PRK06358 331 YYRVAVKSR-EDNKKLLKALEVIL 353 (354)
T ss_pred EEEEEeCCH-HHHHHHHHHHHHHh
Confidence 899998874 67788888887765
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=312.33 Aligned_cols=299 Identities=22% Similarity=0.321 Sum_probs=255.5
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCe
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT 83 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~ 83 (352)
|+|+.|..++| +.+|++++ +++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+
T Consensus 60 ~~p~~g~~~lr------~~ia~~~~-----~~~~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~ 128 (359)
T PRK03158 60 LYPDGYAPELR------TKVAKHLG-----VDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIEGAE 128 (359)
T ss_pred cCCCCcHHHHH------HHHHHHhC-----CCHHHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHcCCe
Confidence 56778999999 99999996 67899999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
+..++++ ++.+|++.+++.++++++++++++||||||.++|.+++.++++.| ++ |+++|+||+|.++.+.+....
T Consensus 129 ~~~~~~~---~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~-~~-~~~ii~De~y~~~~~~~~~~~ 203 (359)
T PRK03158 129 VREVPLK---DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESV-PS-HVLVVLDEAYYEYVTAEDYPD 203 (359)
T ss_pred EEEEecC---CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CC-CcEEEEECchHhhcCCccccc
Confidence 9999986 345899999999888899999999999999999988888887766 37 999999999998876543222
Q ss_pred ccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
.+... ...++++++.|+||.+|++|+|+||+++++++++.+...... +++|.+.|.++.++++. .++.++.++
T Consensus 204 ~~~~~-~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~----~~~~~~~~~ 276 (359)
T PRK03158 204 TLPLL-EKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARPP--FNTTRIAQYAAIAALED----QAFLKECVE 276 (359)
T ss_pred HHHHH-HhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcCC--CCCCHHHHHHHHHHhcC----HHHHHHHHH
Confidence 22222 235789999999999999999999999999999998876543 56899999999999975 677888888
Q ss_pred HHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEE
Q 018665 244 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 323 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi 323 (352)
.++++++.+.+.|++. ++.+. +..|+|+|++++. +..++++.|.++ ||.+.||..|+.++++||
T Consensus 277 ~~~~~~~~~~~~l~~~-~~~~~-~~~g~~i~~~~~~-------------~~~~~~~~l~~~-gv~v~~g~~f~~~~~iRi 340 (359)
T PRK03158 277 KNAEGLEQYYAFCKEY-GLFYY-PSQTNFIFVDTGR-------------DANELFEALLKK-GYIVRSGAALGFPTGVRI 340 (359)
T ss_pred HHHHHHHHHHHHHHHC-CCeeC-CCcCcEEEEECCC-------------CHHHHHHHHHHC-CeEEeeCCCCCCCCeEEE
Confidence 8899999999999887 77775 4567789998752 677899998865 999999998887899999
Q ss_pred EeecCHHHHHHHHHHHHHH
Q 018665 324 SYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 324 ~~~~~~~~l~~~~~~l~~~ 342 (352)
+++. .++.+++++.|+++
T Consensus 341 ~~~~-~~~~~~l~~al~~~ 358 (359)
T PRK03158 341 TIGL-KEQNDKIIELLKEL 358 (359)
T ss_pred ecCC-HHHHHHHHHHHHHh
Confidence 9885 68889999998875
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=308.34 Aligned_cols=304 Identities=23% Similarity=0.336 Sum_probs=249.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hc--CCCCCCCcEEEeCChHHHHHHHHHHhcCCCC-EEEecCCCCCChHHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-EN--GLSYTPDQILVSNGAKQSILQAVLAVCSPGD-EVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~--~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~-~vl~~~~~~~~~~~~~~ 78 (352)
.| ++.|..++| +++|++++ ++ ++.+++++|++|+|+++++..++.+++.+++ .|+++.|+|..+...++
T Consensus 62 ~Y-~~~G~~~Lr------~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~ 134 (374)
T PRK02610 62 RY-PDGGHEALK------QAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQ 134 (374)
T ss_pred CC-CCCchHHHH------HHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHH
Confidence 46 568999999 99999999 54 5778899999999999999988888777775 89999999999999999
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhcc----CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~----~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
..|.+++.++++. +++++|+++|+++++ ++++++++++||||||.+++.++++++.++| + |++||+||+|.+
T Consensus 135 ~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~--~-~~~iI~De~Y~~ 210 (374)
T PRK02610 135 TLGIPVVRVGRDP-ETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLP--E-DILVVIDEAYFE 210 (374)
T ss_pred HcCCEEEEecCCc-ccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhcc--C-CcEEEEeccccc
Confidence 9999999999863 457899999999886 4789999999999999999999999998875 6 899999999998
Q ss_pred cccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCC
Q 018665 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
+.+. ..+..+. ..+++++++||||.+|++|+|+||+++++++++.+...... ++.+.+.|.++..+++. .
T Consensus 211 ~~~~----~~~~~~~-~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~~~--~~~~~~~q~a~~~~l~~---~ 280 (374)
T PRK02610 211 FSQT----TLVGELA-QHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRLP--YNLPSFSQLAAQLALEH---R 280 (374)
T ss_pred cCcc----chHHHHh-cCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhcCC--CCCCHHHHHHHHHHhcC---H
Confidence 7532 1222222 24678999999999999999999999999999998876533 45788999999988875 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~ 314 (352)
+.+.+.++..++ .++.+.+.|++++++.+ .|++|+|+|++++... +..++++.|.+ .||.+.++
T Consensus 281 ~~~~~~~~~~~~-~r~~l~~~L~~~~~~~~-~p~~g~f~~~~l~~~~-----------~~~~~~~~l~~-~gi~v~~~-- 344 (374)
T PRK02610 281 QELLAAIPEILQ-ERDRLYQALQELPQLRV-WPSAANFLYLRLSQDA-----------ALAALHQALKA-QGTLVRHT-- 344 (374)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhCCCcEe-CCCcceEEEEeCCCCC-----------CHHHHHHHHHH-CCEEEEeC--
Confidence 445555555444 46778888888777775 4788999999998642 67888888765 49999763
Q ss_pred CCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 315 FGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 315 ~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
++++||+++.+ +++++++++|+++++.+.
T Consensus 345 ---~~~lRls~~~~-~~~~~~l~~l~~~l~~~~ 373 (374)
T PRK02610 345 ---GGGLRITIGTP-EENQRTLERLQAALTQLE 373 (374)
T ss_pred ---CCeEEEeCCCH-HHHHHHHHHHHHHHhhcC
Confidence 57899999864 678999999999987653
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=305.90 Aligned_cols=315 Identities=25% Similarity=0.401 Sum_probs=264.2
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
..|+++.|..++| +.+|++++ +++++|++++|+++++..++.+++++||.|++++|+|..+...++..|
T Consensus 60 ~~y~~~~g~~~lr------~~ia~~l~-----~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g 128 (380)
T PRK06225 60 CKYPPPEGFPELR------ELILKDLG-----LDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFG 128 (380)
T ss_pred CCCCCCcchHHHH------HHHHHhcC-----CCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHhC
Confidence 3577788999999 99999986 678899999999999999999999999999999999999989999999
Q ss_pred CeEEEecccC-CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 82 ATPVILPTRI-SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 82 ~~v~~i~~~~-~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
.+++.++++. +.++.+|++.+++.++++++++++++|+||||.+++.+++++|+++|+++ |+++|+||+|.++... .
T Consensus 129 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~-~ 206 (380)
T PRK06225 129 AEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDN-DAFLLHDCTYRDFARE-H 206 (380)
T ss_pred ceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHC-CcEEEEehhHHHHhcc-C
Confidence 9999999753 34578999999999988899999999999999999999999999999999 9999999999876432 1
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
.+...+ ..++++++.|+||.+|++|+|+||+++++++++.+..... ...+.+.+.+.++.++++. ..++.++
T Consensus 207 --~~~~~~--~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~l~~---~~~~~~~ 278 (380)
T PRK06225 207 --TLAAEY--APEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVI-NDLGTNVIAQEAAIAGLKV---KDEWIDR 278 (380)
T ss_pred --Cchhhc--CCCCEEEEeechhhcCCccceeEEEecCHHHHHHHHHHHh-cccCCCHHHHHHHHHHHhc---chHHHHH
Confidence 222222 2468899999999999899999999999999998876542 3466888899888888875 2567778
Q ss_pred HHHHHHHHHHHHHHHhcccCCcee-cCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
+++.++++++.+.+.|++++++.+ ..+..|+++|++++... .+..++.+.|.++ ||.+.||..|+.
T Consensus 279 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~l~~~l~~~-gi~v~~g~~~~~~~ 347 (380)
T PRK06225 279 IRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAG----------IDPEDLVEYLLER-KIFVRQGTYTSKRF 347 (380)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEccccc----------CCHHHHHHHHHHC-CEEEcCCcccCcCC
Confidence 888888888889999988767543 24567778899886421 1678899998855 999999876542
Q ss_pred -CCeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 318 -DTCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 318 -~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
++++|++++.+++++++++++|++++++++.
T Consensus 348 ~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 348 GDRYIRVSFSIPREQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHHHhhc
Confidence 4699999999999999999999999988764
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=307.46 Aligned_cols=297 Identities=23% Similarity=0.376 Sum_probs=251.2
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
..| ++.+..++| +++|++++ +++++|++|+|+++++..++.+++++||.|++++|+|..+...++..|
T Consensus 60 ~~Y-~~~~~~~lr------~~ia~~~~-----~~~~~I~it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g 127 (357)
T PRK14809 60 HSY-PKASHADLT------AALADRWD-----VSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHH 127 (357)
T ss_pred hcC-CCCCHHHHH------HHHHHHhC-----CCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcC
Confidence 346 467889999 99999986 789999999999999999999999999999999999998888889999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
..++.++++.++++.++.+++++.. ++++++++++||||||.++|.+++++|+++|+ . +++||+||+|.++.+.+.
T Consensus 128 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~-~-~~~iI~De~y~~~~~~~~- 203 (357)
T PRK14809 128 GEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLDEVEALAERTD-E-ETLVVVDEAYGEFAERPS- 203 (357)
T ss_pred CeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCc-c-CcEEEEechhhhccCCch-
Confidence 9999999976567778888887765 36789999999999999999999999999886 4 678999999998865331
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
..... ...+++++++||||.+|++|+|+||+++++++++.+.+... .++++.+.+.++.++++. .+++++.
T Consensus 204 --~~~~~-~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~l~~----~~~~~~~ 274 (357)
T PRK14809 204 --AVALV-EERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVNT--PFAASELACRAGLAALDD----DEHVERT 274 (357)
T ss_pred --hHHHH-hhCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHHhCC--CCCCCHHHHHHHHHHhCC----HHHHHHH
Confidence 11112 22578999999999999999999999999999999887643 456889999999998874 6788888
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
++.++++++.+.+.|+.. . .+.+|+|+|++++ +..++.+.|.+ .||.+.||..|+.++++
T Consensus 275 ~~~~~~~r~~l~~~L~~~-~----~~~~g~f~~~~~~--------------~~~~~~~~l~~-~gv~v~~g~~f~~~~~i 334 (357)
T PRK14809 275 VETARWAREYIREELDAP-T----WESAGNFVLAEVG--------------DASAVAEAAQE-RGVIVRDCTSFGLPECI 334 (357)
T ss_pred HHHHHHHHHHHHHHhcCc-c----CCCCCCEEEEECC--------------CHHHHHHHHHH-CCEEEEECccCCCCCeE
Confidence 999999999999998753 2 2577888999874 46688888765 59999999999888999
Q ss_pred EEEeecCHHHHHHHHHHHHHHHh
Q 018665 322 RISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~~~ 344 (352)
||+++. .+++++++++|+++++
T Consensus 335 Rls~~~-~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 335 RITCGT-REETERAVEVLNEVLA 356 (357)
T ss_pred EEecCC-HHHHHHHHHHHHHHhc
Confidence 999874 6899999999999875
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=311.70 Aligned_cols=310 Identities=16% Similarity=0.157 Sum_probs=248.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcE--EEeCChHHHHHHHHHHh--cCCCCEEEecCCCCCChHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQI--LVSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i--~~~~g~~~a~~~~~~~l--~~~~~~vl~~~~~~~~~~~~~ 77 (352)
.|++..|.+++| +++++++. +.+..+++++| ++|+|+++++..++.++ +++||+|++++|+|..+...+
T Consensus 64 ~Y~~~~G~~~lR------~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~ 137 (396)
T PRK09257 64 NYLPIEGLAAYR------QAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIF 137 (396)
T ss_pred CcCCCCCCHHHH------HHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHH
Confidence 599999999999 99999998 44444578877 99999999999998765 589999999999999999999
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+..|.+++.+++...+++++|++.+++.++ .+..++++++||||||.+++.+++++|+++|+++ |+++|+||+|.+
T Consensus 138 ~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~ 216 (396)
T PRK09257 138 EAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKER-GLIPFLDIAYQG 216 (396)
T ss_pred HHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEeccccc
Confidence 999999999998433457899999999875 2345666799999999999999999999999999 999999999999
Q ss_pred cccCC-CCccccccCCCCCCceEEEeccccccccccceeEEEEc---ChhH----HHHHHhhhhccccCCChHHHHHHHH
Q 018665 155 IIYAP-ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKHF----VAACNKIQSQFTSGASSISQKAGVA 226 (352)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (352)
+.++. ....++..+....+++++++||||.++++|+|+||+++ +++. +..+.........+++.+.|.++..
T Consensus 217 l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 296 (396)
T PRK09257 217 FGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVAT 296 (396)
T ss_pred cccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHH
Confidence 87642 22334444433346899999999999988999999973 4443 3444343333344578889999999
Q ss_pred HhcccCC---ChHHHHHHHHHHHHHHHHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHH
Q 018665 227 ALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 227 ~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
++..+.. ..+++++.++.++++++.+.+.|++.. ++.+..+++|+|+|++++ . +++++
T Consensus 297 ~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~---------------~-~~~~~ 360 (396)
T PRK09257 297 ILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLT---------------P-EQVDR 360 (396)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCC---------------H-HHHHH
Confidence 9876321 135577788999999999999999862 377778999999999864 2 45566
Q ss_pred HHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHH
Q 018665 301 LLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGL 343 (352)
Q Consensus 301 l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~ 343 (352)
|+++.||.+.|. + ||+++. +++++++++++|++++
T Consensus 361 l~~~~~V~~~p~------~--ri~~~~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 361 LREEFGVYAVGS------G--RINVAGLNESNIDYVAEAIAAVL 396 (396)
T ss_pred HHHcCCEEEcCC------C--eEEEeeCCHHHHHHHHHHHHhhC
Confidence 777789999873 2 999985 9999999999998753
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=304.21 Aligned_cols=321 Identities=19% Similarity=0.253 Sum_probs=253.6
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCC---CCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYT---PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~---~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~ 78 (352)
..|+++.|.+++| +.+++++.+...... .++|++|+|+++++..++.+++++||.|++++|+|..+...+.
T Consensus 38 ~~Y~~~~G~~~lr------~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~ 111 (388)
T PRK08637 38 FPYAPPQGIPELR------DLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFN 111 (388)
T ss_pred cCCCCCCCCHHHH------HHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH
Confidence 3589999999999 999999873332232 2689999999999999999999999999999999999998765
Q ss_pred -hcCCeEEEecccCCCCcccCHHHHHhhcc----CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh-----CCCEEEEe
Q 018665 79 -IADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK-----HPRLLVLS 148 (352)
Q Consensus 79 -~~g~~v~~i~~~~~~~~~~d~~~l~~~l~----~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~-----~~~~~liv 148 (352)
..|.+++.+++.. +++++|++.+++.++ +...++++++||||||.+++.+++++|+++|++ + +++||+
T Consensus 112 ~~~g~~vv~v~~~~-~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~-~~~iI~ 189 (388)
T PRK08637 112 TRRGAEIVTYPIFD-EDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGT-KVVAVV 189 (388)
T ss_pred HhcCCEEEEecccC-CCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEe
Confidence 6899999999842 223589999998876 445567788999999999999999999999875 9 999999
Q ss_pred cccccccccCCCCcccc-ccCCCCCCce--EEEeccccccccccceeEEEEcC------hhHHHHHHhhh----hccccC
Q 018665 149 DEIYEHIIYAPATHTSF-ASLPGMWERT--LTVNGFSKAFAMTGWRLGYIAGP------KHFVAACNKIQ----SQFTSG 215 (352)
Q Consensus 149 D~~~~~~~~~~~~~~~~-~~~~~~~~~~--i~~~s~sK~~g~~g~~~g~l~~~------~~~~~~~~~~~----~~~~~~ 215 (352)
||+|.++.+++....++ ..+....+++ +.+.|+||.++++|+|+||++++ +++++.+.... .....+
T Consensus 190 De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (388)
T PRK08637 190 DDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISN 269 (388)
T ss_pred cccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCC
Confidence 99999998877544443 2222334565 44569999998999999999854 57777765421 112346
Q ss_pred CChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCC
Q 018665 216 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 292 (352)
Q Consensus 216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 292 (352)
+|.+.|.++..+++.+.. ....++.+..++++++.+.+.|+.. +++.+.++++|+++|++++..
T Consensus 270 ~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~------------ 336 (388)
T PRK08637 270 GPHPSQSAVLRALNSPEF-DKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKGV------------ 336 (388)
T ss_pred CCcHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCChH------------
Confidence 899999999999976322 2334556667888888888888654 367888889999999999742
Q ss_pred ChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 293 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 293 ~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
++.++++.|.+++||.+.+. .++++||+++. +++++++++++|++++++++
T Consensus 337 ~~~~l~~~l~~~~gv~~~~~----~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (388)
T PRK08637 337 DAEELRVHLLEKYGIGTIAL----NETDLRIAFSCVEEEDIPELFDSIYKAIKDLR 388 (388)
T ss_pred HHHHHHHHHhhhcceEEEec----cCCceEEEeecCCHHHHHHHHHHHHHHHHhcC
Confidence 67889999876669988642 36789999998 88999999999999998653
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=307.19 Aligned_cols=269 Identities=23% Similarity=0.359 Sum_probs=232.4
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|++..|..++| +++|+++. ++|+.+++++|++|+|+++++..++.+++ ++||.|++++|+|..|...++.
T Consensus 101 ~~Y~~~~G~~~LR------~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~ 174 (407)
T PLN02368 101 GAYSDSRGLPGVR------KEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISL 174 (407)
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHH
Confidence 4699999999999 99999999 77988899999999999999999999987 6899999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~ 153 (352)
.|.+++.++++.+.+|.+|++.|++.+++ +++++++++||||||.+++.+++++|+++|+++ |++||+||+|.
T Consensus 175 ~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~-~~~II~DE~Y~ 253 (407)
T PLN02368 175 LGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQE-RLVLLGDEVYQ 253 (407)
T ss_pred cCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEcccc
Confidence 99999999998777789999999998863 689999999999999999999999999999999 99999999999
Q ss_pred ccccCCC-CccccccC----C---CCCCceEEEecccccc-ccccceeEEEE---cChhHHHHHHhhhhccccCCChHHH
Q 018665 154 HIIYAPA-THTSFASL----P---GMWERTLTVNGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQSQFTSGASSISQ 221 (352)
Q Consensus 154 ~~~~~~~-~~~~~~~~----~---~~~~~~i~~~s~sK~~-g~~g~~~g~l~---~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
++.|++. .+.++..+ . ...++++++.||||.+ |++|+|+||++ +++++++.+.+... ..+++|.+.|
T Consensus 254 ~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~-~~~~~~~~~Q 332 (407)
T PLN02368 254 QNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVAS-IALSPNVSGQ 332 (407)
T ss_pred ccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhc-ccCCCCcHHH
Confidence 9988764 33444332 1 1135899999999998 89999999999 48899999888643 3567899999
Q ss_pred HHHHHHhcccCCC----hHHH---HHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecC
Q 018665 222 KAGVAALGLGYAG----GEVV---SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 278 (352)
Q Consensus 222 ~~~~~~l~~~~~~----~~~~---~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~ 278 (352)
.++.+++...... ..+. +++.+.++++++.+.+.|++++|+.+..|+++||+|++++
T Consensus 333 ~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~ 396 (407)
T PLN02368 333 IFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIK 396 (407)
T ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCC
Confidence 9999999753210 1233 4567889999999999999999999999999999997654
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=305.96 Aligned_cols=302 Identities=24% Similarity=0.327 Sum_probs=249.3
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
..|++..| .++| +.+|++++ +++++|++|+|+++++..++.+++++||+|+++.|+|..+...++..|
T Consensus 66 ~~Y~~~~g-~~lr------~~ia~~~~-----~~~~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~g 133 (371)
T PRK05166 66 RLYPDPQG-RALR------EAIAARTG-----VPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMG 133 (371)
T ss_pred hcCCCCcH-HHHH------HHHHHHhC-----cCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcC
Confidence 35776677 4899 99999986 678999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++++. ++.+|++++++.++++++++++++||||||.++|.+++++|+++|+ . ++++|+||+|.++.+++.
T Consensus 134 ~~~~~v~~~~--~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~-~-~~~ii~De~y~~~~~~~~- 208 (371)
T PRK05166 134 ARVERVTVTP--DLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATP-P-ETLIVVDEAYAEYAAGDD- 208 (371)
T ss_pred CeEEEeecCC--CCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-C-CcEEEEECcHHHhcCCcC-
Confidence 9999999863 4568999999999888899999999999999999999999999885 5 788999999998875432
Q ss_pred cccccc-CCCCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 162 HTSFAS-LPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 162 ~~~~~~-~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
.++... .....+++++++||||.+|++|+|+||+++ ++++++.+.+... .+++|.+.|.++.+++.. .++++
T Consensus 209 ~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~--~~~~~~~~q~~~~~~l~~----~~~~~ 282 (371)
T PRK05166 209 YPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRT--PFNVNGAAQAAALAALDD----EEHLA 282 (371)
T ss_pred cccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhcc--CCCCCHHHHHHHHHHhcC----HHHHH
Confidence 223222 222246899999999999999999999875 6788888876543 345889999888888875 67888
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
+.++.++++++.+.+.|++. |+.+ .+.+|+|+|++++. +..++.+.|.++ ||.+.||..++.++
T Consensus 283 ~~~~~~~~~r~~l~~~L~~~-g~~~-~p~~g~fl~~~~~~-------------~~~~l~~~l~~~-gi~v~p~~~~~~~~ 346 (371)
T PRK05166 283 KGVALALAERERLKKELAEM-GYRI-APSRANFLFFDARR-------------PASAVAEALLRQ-GVIVKPWKQPGFET 346 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHC-cCee-CCCcCCEEEEeCCC-------------CHHHHHHHHHHC-CeEEecCCCCCCCC
Confidence 88899999999999999987 7775 45668889998753 577899998876 99999998766789
Q ss_pred eEEEEeecCHHHHHHHHHHHHHHH
Q 018665 320 CIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 320 ~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
++||+++.+ ++.+++.+.|+.++
T Consensus 347 ~iRi~~~~~-~~~~~l~~~l~~i~ 369 (371)
T PRK05166 347 FIRVSIGSP-EENDHFVAALDKVL 369 (371)
T ss_pred eEEEEcCCH-HHHHHHHHHHHHHh
Confidence 999999973 44555555555443
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=299.47 Aligned_cols=295 Identities=17% Similarity=0.257 Sum_probs=238.8
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
+.| |++...++| +++|++++ +.+++|++|+|+++++..++. +.+++ .|++++|+|..|...++..|
T Consensus 35 ~~Y-p~~~~~~lr------~~ia~~~~-----~~~~~I~it~Gs~~~l~~~~~-~~~~~-~vv~~~P~y~~y~~~~~~~G 100 (332)
T PRK06425 35 SIY-PEISYTDIE------DQIKIYTQ-----GLKIKVLIGPGLTHFIYRLLS-YINVG-NIIIVEPNFNEYKGYAFTHG 100 (332)
T ss_pred ccC-cCcCHHHHH------HHHHHHhC-----CCcceEEECCCHHHHHHHHHH-HhCCC-cEEEeCCChHHHHHHHHHcC
Confidence 345 677789999 99999998 788999999999999998887 45665 68888999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.+|++. +..|.+.+++ .+++++++++||||||.+++.+++++|+++|+++ +++||+||+|.++.+++
T Consensus 101 ~~v~~vp~~~---~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~DE~Y~~~~~~~-- 171 (332)
T PRK06425 101 IRISALPFNL---INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKK-GALLFIDEAFIDFVPNR-- 171 (332)
T ss_pred CeEEEEeCCc---ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHc-CCEEEEecchhcccccc--
Confidence 9999999863 2346555543 3788999999999999999999999999999999 99999999999987643
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
..+.......++++++++||||.+|++|+|+||+++++++++.+.+....+ ..+.+.+.+ +.... ...+.++.
T Consensus 172 ~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~~~--~~~~~~~~~----l~~~~-~~~~~~~~ 244 (332)
T PRK06425 172 AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKITEPW--SVCDPAIDF----IRSID-LDYVAKHS 244 (332)
T ss_pred chhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHcCCCC--ccCHHHHHH----HHHhh-hHHHHHHH
Confidence 223334433457999999999999999999999999999999988765433 244443322 22211 14556778
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--CC
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DT 319 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~~ 319 (352)
++.++++++.+.+.|+++ |+.+..+..|+|+|++++ ++.++.+.|.++ ||.+.||..|+. ++
T Consensus 245 ~~~~~~~r~~l~~~L~~~-g~~~~~~~~g~f~~~~~~--------------~~~~~~~~l~~~-gi~v~~~~~f~~~~~~ 308 (332)
T PRK06425 245 LDIMENERSYLINNLEAM-GFRAAGDPSANFITFMIP--------------DAHDFYSYLLKN-GILVRLLDDYECLGEQ 308 (332)
T ss_pred HHHHHHHHHHHHHHHHHC-CCEECCCCCceEEEEEcC--------------CHHHHHHHHHHC-CeEEEECCCCCCCCCC
Confidence 889999999999999988 888765567788999875 467888998875 999999988853 47
Q ss_pred eEEEEeecCHHHHHHHHHHHHHHH
Q 018665 320 CIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 320 ~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
++||+++.+ ++.+++++.|++++
T Consensus 309 ~iRis~~~~-~~~~~l~~al~~~~ 331 (332)
T PRK06425 309 YIRIAIRRR-SFNIKLVNALRNFL 331 (332)
T ss_pred EEEEEeCCH-HHHHHHHHHHHHHh
Confidence 999999974 68899999998765
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=303.88 Aligned_cols=297 Identities=23% Similarity=0.276 Sum_probs=247.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
+| |+.+..++| +++|++++ +++++|++|+|+++++..++.+++++||+|++++|+|..|...++..|.
T Consensus 82 ~Y-p~~~~~~lr------~~ia~~~~-----~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~ 149 (380)
T PLN03026 82 VY-PDPESRRLR------AALAEDSG-----LESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGA 149 (380)
T ss_pred cC-CCCCHHHHH------HHHHHHhC-----cChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCC
Confidence 35 566788999 99999997 7889999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhc-cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 83 TPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l-~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+++.++.+ .++.+|++++++.+ +++++++++++||||||.+++.+++++|++ . .+++|+||+|.++.+.+..
T Consensus 150 ~~~~v~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~----~-~~~vi~DeaY~~~~~~~~~ 222 (380)
T PLN03026 150 EVIKVPRT--PDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILE----L-PILVVLDEAYIEFSTQESR 222 (380)
T ss_pred EEEEeecC--CCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHh----c-CCEEEEECcchhhcCCcch
Confidence 99999885 45678999999998 678999999999999999999666655553 3 3799999999987654321
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
......++++++++||||.+|++|+|+||+++++++++.+.+.... ++.+.+.|.++.++++. .+++++.
T Consensus 223 ----~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~~--~~~~~~~q~aa~~aL~~----~~~~~~~ 292 (380)
T PLN03026 223 ----MKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP--YNVSVAAEVAACAALSN----PKYLEDV 292 (380)
T ss_pred ----HHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhcCC--CCCCHHHHHHHHHHhhC----HHHHHHH
Confidence 1111235789999999999999999999999999999998876654 45889999999999975 6788889
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
++.++++++.+.+.|++++++.+ .+.+++|+|++++... ++.++++.|.++ ||.+.++...+.++++
T Consensus 293 ~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~~~~~~~~-----------~~~~~~~~l~~~-gI~v~~~~~~~~~~~l 359 (380)
T PLN03026 293 KNALVEERERLFGLLKEVPFLEP-YPSDANFILCRVTSGR-----------DAKKLKEDLAKM-GVMVRHYNSKELKGYI 359 (380)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEEEECCCCC-----------CHHHHHHHHHHC-CeEEEECCCCCCCCEE
Confidence 99999999999999998844554 5778889999987531 678899998854 9999998765567899
Q ss_pred EEEeecCHHHHHHHHHHHHHH
Q 018665 322 RISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~ 342 (352)
||+++. .++.+++++.|++.
T Consensus 360 Ris~~~-~~~~~~l~~al~~~ 379 (380)
T PLN03026 360 RVSVGK-PEHTDALMEALKQL 379 (380)
T ss_pred EEecCC-HHHHHHHHHHHHHh
Confidence 999995 46777777777653
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=325.27 Aligned_cols=328 Identities=20% Similarity=0.245 Sum_probs=261.5
Q ss_pred CCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEE
Q 018665 8 QGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~ 85 (352)
.+.++++ +++++++. ++|++.++ ++|++++|+++++..++.+++++||.|+++.|+|..|...++..|.+++
T Consensus 730 ~g~pdlr------~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv 803 (1082)
T PLN02672 730 ESETDPR------PSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFR 803 (1082)
T ss_pred CCChHHH------HHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEE
Confidence 4566778 99999999 78988765 6899999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCcccCHHHHHhhccC-CeeEEEEcCCC-CCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc-
Q 018665 86 ILPTRISENFLLDPKVLESKLTE-KSRLLILCSPS-NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH- 162 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~-nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~- 162 (352)
.++++.++++.+|++++++++++ ..+++++++|+ ||||.+++.+++++|+++|+++ |++||+||+|+++.|++...
T Consensus 804 ~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~-di~VIsDEaYsdL~Fd~~~~s 882 (1082)
T PLN02672 804 RIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKY-GARVIIDTSFSGLEYDTSGWG 882 (1082)
T ss_pred EEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHc-CCEEEEeCCCCccccCCCCCc
Confidence 99997667889999999999975 45688999997 9999999999999999999999 99999999999888865421
Q ss_pred -cccc----cCCC--CCCceEEEeccccccccccceeEEEEcCh-hHHHHHHhhhhccccCCChHHHHHHHHHhc---c-
Q 018665 163 -TSFA----SLPG--MWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALG---L- 230 (352)
Q Consensus 163 -~~~~----~~~~--~~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~- 230 (352)
.++. .... ..+++++++|+||.++++|+|+||+++++ .+++.+....... .++...+.++.+++. .
T Consensus 883 ~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s--~~~~~~q~Aaaaalall~~~ 960 (1082)
T PLN02672 883 GWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLS--RPHSTLKYTIKKLLGLKNQK 960 (1082)
T ss_pred ccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhc--CCCcHHHHHHHHHHHHHhcc
Confidence 1111 1111 12478999999999999999999999865 4888887653322 233344444444442 1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcc--cCC---C-CCCChHHHHHHHHHc
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA--EGF---G-KIENSESLCRYLLDK 304 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--~~~---~-~~~~~~~~~~~l~~~ 304 (352)
......++.+.++.++++++++.+.|++. |+.+..|++|+++|++++...+... +.. . -..+..+++++|+++
T Consensus 961 ~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee 1039 (1082)
T PLN02672 961 SSDLLDGVAEQKKILKSRAERLKETLEAC-GWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKS 1039 (1082)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHc
Confidence 11013456777888999999999999998 8999999999999998753221000 000 0 002678899999988
Q ss_pred cCEEeccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 305 AQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 305 ~gi~i~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
.||.+.||..|+.++++||+++.+++++++++++|+++.+-
T Consensus 1040 ~GVaV~PGs~FG~~g~~RIsfa~~~e~LeeALerL~kf~~~ 1080 (1082)
T PLN02672 1040 TGLCINSSSWTGIPGYCRFSFALEDSEFDRALKAIARFKEL 1080 (1082)
T ss_pred CCEEEecCcccCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 89999999988888999999999989999999999997653
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=301.58 Aligned_cols=304 Identities=22% Similarity=0.352 Sum_probs=248.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCC-CEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~-~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|+ +++..++| +++|++++ +++++|++++|+++++..++.+++.+| +.|++++|+|..+...++..|
T Consensus 55 ~Y~-~~~~~~lr------~~ia~~~~-----~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~g 122 (364)
T PRK04781 55 RYP-DPQPPGLR------SALAALYG-----CAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQN 122 (364)
T ss_pred cCC-CCCHHHHH------HHHHHHhC-----cChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcC
Confidence 453 44578899 99999996 788999999999999999999998888 799999999998888889999
Q ss_pred CeEEEecccC-CCCcccCHHHHHhhc-cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 82 ATPVILPTRI-SENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 82 ~~v~~i~~~~-~~~~~~d~~~l~~~l-~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.+++.++++. ++++.+|++++++.+ .++++++++++||||||.+++.+++++++++|+ . ++++|+||+|.++.+..
T Consensus 123 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~-~~~iI~Deay~~f~~~~ 200 (364)
T PRK04781 123 APLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQ-G-KALVVVDEAYGEFSDVP 200 (364)
T ss_pred CEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-C-CcEEEEeCcchhhcCCc
Confidence 9999999853 345678999886654 568899999999999999999999999998874 5 78999999999876422
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
+........+++++++||||.+|++|+|+||+++++++++.+.+.... ++.+.+.|.++..+++++. ..+..
T Consensus 201 ----~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~--~~~~~~~~~~a~~~l~~~~--~~~~~ 272 (364)
T PRK04781 201 ----SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQAP--YPVPTPCAALAEQALSAPA--LAVTA 272 (364)
T ss_pred ----chHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhccCC--CCCCHHHHHHHHHHHhccc--HHHHH
Confidence 222222335789999999999999999999999999999999887654 4588888998888887621 24566
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC-CCC
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GDD 318 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~-~~~ 318 (352)
+..+.++++++.+.+.|+.++++....|++|+|+|++++ +..++.+.|.++ ||.+.+|..| +.+
T Consensus 273 ~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~--------------~~~~~~~~l~~~-gI~v~~~~~~~~~~ 337 (364)
T PRK04781 273 RRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD--------------DAEAAFQALLAA-GVVVRDQRAAPRLS 337 (364)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--------------CHHHHHHHHHHC-CeEEeeCCCCCCCC
Confidence 666778999999999999887775456788999999986 456788887754 9999998764 346
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 319 TCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
+++||+++. .++.+++++.|++...
T Consensus 338 ~~~Ris~~~-~~~~~~l~~al~~~~~ 362 (364)
T PRK04781 338 DALRITLGT-PEQNDRVLAALQRTQA 362 (364)
T ss_pred CeEEEeCCC-HHHHHHHHHHHHHHHh
Confidence 799999987 4677788888876543
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=303.01 Aligned_cols=303 Identities=25% Similarity=0.361 Sum_probs=250.0
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..| |+.|..++| +.+|+++. ++|+++++++|++|+|+++++..++.+++++||.|+++.|+|..+...++..
T Consensus 60 ~~Y-~~~g~~~lr------~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~ 132 (368)
T PRK03317 60 NRY-PDRDAVALR------ADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGT 132 (368)
T ss_pred ccC-CCCchHHHH------HHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHhc
Confidence 346 567889999 99999999 7788899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
|.+++.++.. .++++|++.++++++ ++++++++++|+||||.+++.+ ++.++++.+ ++++|+||+|+++.+.+
T Consensus 133 g~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~---~l~~l~~~~-~~~lI~DE~y~~~~~~~ 206 (368)
T PRK03317 133 HTEWVEGPRA--ADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLD---DVEAILDAA-PGIVVVDEAYAEFRRSG 206 (368)
T ss_pred CCeeEEcccC--CCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHH---HHHHHHHHC-CceEEEeCCchhhcccC
Confidence 9998888764 456799999999986 4788899999999999999955 555555566 78999999999987655
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
. .+........+++++++||||.+|++|+|+||+++++++++.+..... .++.|++.+.++.++++. .+...
T Consensus 207 ~--~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~--~~~~s~~~~~a~~~~l~~----~~~~~ 278 (368)
T PRK03317 207 T--PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRL--PYHLSAVTQAAARAALRH----ADELL 278 (368)
T ss_pred C--cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcCC--CCCCCHHHHHHHHHHhhC----HHHHH
Confidence 3 222222222468899999999999899999999999999999886653 456889999999999975 34455
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
+.+++++++++.+.+.|++. |+.+..+.+++++|.+++ +...+.+.|.++ ||.+.+. +.++
T Consensus 279 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~-Gv~v~~~---~~~~ 339 (368)
T PRK03317 279 ASVAALRAERDRVVAWLREL-GLRVAPSDANFVLFGRFA--------------DRHAVWQGLLDR-GVLIRDV---GIPG 339 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCEeCCCCCcEEEEeccC--------------CHHHHHHHHHHC-CEEEEeC---CCCC
Confidence 56677888899999999987 888888888887776553 567888888865 9999864 3478
Q ss_pred eEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 320 CIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 320 ~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
++|++++. .++++++++.|++++..
T Consensus 340 ~iRi~~~~-~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 340 WLRVTIGT-PEENDAFLAALAEVLAT 364 (368)
T ss_pred eEEEecCC-HHHHHHHHHHHHHHHHH
Confidence 99999874 57899999999988754
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=304.95 Aligned_cols=295 Identities=22% Similarity=0.381 Sum_probs=246.5
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCC-CEEEecCCCCCChHHHHHhcCCeE
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATP 84 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~-~~vl~~~~~~~~~~~~~~~~g~~v 84 (352)
|+....+++ +.++++++ +++++|++|+|+++++..++.+++++| ++|+++.|+|..|...++..|.++
T Consensus 55 p~~~~~~l~------~~~a~~~g-----~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~ 123 (351)
T PRK01688 55 PECQPKAVI------ENYAAYAG-----VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEI 123 (351)
T ss_pred CCCChHHHH------HHHHHHhC-----CCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEE
Confidence 666667888 99999987 789999999999999999999998886 899999999999999999999999
Q ss_pred EEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 85 VILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 85 ~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
+.++++ .++.+|++++++++ ++++++++++||||||..++.+++++|++.|++ ++++|+||+|.+|... .+
T Consensus 124 ~~v~~~--~~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~--~~~vivDEay~~f~~~----~s 194 (351)
T PRK01688 124 RTVPTL--DNWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRG--KAIVVADEAYIEFCPQ----AS 194 (351)
T ss_pred EEeecC--CCCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEECchhhcCCC----CC
Confidence 999986 35779999999988 588999999999999999999999999988864 5689999999987522 23
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
...+...++++++++||||.+|++|+|+||+++++++++.+.+....+ +.+.+.+.++.++++.. ..+++++.++.
T Consensus 195 ~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~--~v~~~~~~~a~~~L~~~--~~~~~~~~~~~ 270 (351)
T PRK01688 195 LAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLKVIAPY--PLSTPVADIAAQALSPQ--GIAAMRERVAE 270 (351)
T ss_pred hHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhccCCC--CCCHHHHHHHHHHHhcc--hHHHHHHHHHH
Confidence 223223367999999999999999999999999999999988765544 47778888888888741 13577888888
Q ss_pred HHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC-CCCCeEEE
Q 018665 245 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GDDTCIRI 323 (352)
Q Consensus 245 ~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~-~~~~~iRi 323 (352)
++++++++.+.|++++++..+.++.++|+|++++ ++.++.+.|.++ ||.++++..+ +.++++||
T Consensus 271 ~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~--------------~~~~l~~~L~~~-gi~vr~~~~~~~~~~~iRi 335 (351)
T PRK01688 271 INANRQWLIAALKEIPCVEQVFDSETNYILARFT--------------ASSAVFKSLWDQ-GIILRDQNKQPGLSNCLRI 335 (351)
T ss_pred HHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--------------CHHHHHHHHHHC-CeEEEECCCcCCCCCeEEE
Confidence 8999999999999887776555778888998875 567888998865 9999877654 45789999
Q ss_pred EeecCHHHHHHHHHHHH
Q 018665 324 SYAASLTTLQAAVERIK 340 (352)
Q Consensus 324 ~~~~~~~~l~~~~~~l~ 340 (352)
+++. .++.+++++.|+
T Consensus 336 s~~~-~~e~~~l~~al~ 351 (351)
T PRK01688 336 TIGT-REECQRVIDALR 351 (351)
T ss_pred eCCC-HHHHHHHHHhhC
Confidence 9985 688899988763
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=294.83 Aligned_cols=301 Identities=26% Similarity=0.394 Sum_probs=258.5
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCe
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT 83 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~ 83 (352)
.+|++...+++ ++++++++ ..++++|++++|+++.+..++++++.+||+|+++.|+|..|...++..|.+
T Consensus 53 rYPd~~~~~l~------~a~a~~~~----~~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~ 122 (356)
T COG0079 53 RYPDPDYRELR------AALAEYYG----VVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAE 122 (356)
T ss_pred cCCCCcHHHHH------HHHHHHhC----CCCcceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHHhcCCe
Confidence 34677888999 99999986 145689999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
++.++..+ +..|++.+.+.+++++++|++||||||||..++.++++++++.+.+ +.++|+||+|.+|.- .
T Consensus 123 ~~~v~~~~---~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvDEAY~eF~~-----~ 192 (356)
T COG0079 123 VVKVPLKE---FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVIDEAYIEFSP-----E 192 (356)
T ss_pred EEEecccc---cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEeCchhhcCC-----c
Confidence 99999874 7799999999998899999999999999999998888888876654 589999999999753 2
Q ss_pred ccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
+...+...++|++++.||||++|++|+|+||+++++++++.+++....|+ .|.+++.++.+++++ .+++++...
T Consensus 193 ~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p~~--v~~~a~~aa~aal~~----~~~~~~~~~ 266 (356)
T COG0079 193 SSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFN--VSSPALAAAIAALRD----ADYLEESVE 266 (356)
T ss_pred hhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcCCCC--CCHHHHHHHHHHccc----HHHHHHHHH
Confidence 22222224678999999999999999999999999999999999887765 999999999999997 688999999
Q ss_pred HHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC-CCCCeEE
Q 018665 244 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GDDTCIR 322 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~-~~~~~iR 322 (352)
.++..++++.+.|+++ ++..+.|+.++|++++++.. .+..+.+.|.++ ||.++..... ..++++|
T Consensus 267 ~~~~~r~rl~~~l~~~-~~~~v~pS~aNFvlv~~~~~------------~~~~l~~~L~~~-giivR~~~~~~~~~~~lR 332 (356)
T COG0079 267 RIREERERLYAALKAL-GLFGVFPSQANFVLVRVPDA------------EAAALAEALLKK-GILVRDCSSVGLLPGYLR 332 (356)
T ss_pred HHHHHHHHHHHHHHhC-CCCeecCCCCcEEEEECCCc------------cHHHHHHHHHHC-CEEEEeCCCCCCCCCeEE
Confidence 9999999999999998 45534566688899998752 355788998877 9999998652 2467999
Q ss_pred EEeecCHHHHHHHHHHHHHHHhh
Q 018665 323 ISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 323 i~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
|++...+|. +++++.|++++..
T Consensus 333 itvgt~een-~~ll~AL~~~~~~ 354 (356)
T COG0079 333 ITVGTPEEN-DRLLAALREVLKG 354 (356)
T ss_pred EEeCCHHHH-HHHHHHHHHHHhc
Confidence 999997666 9999999988764
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=299.73 Aligned_cols=297 Identities=20% Similarity=0.284 Sum_probs=239.8
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
..|++ .+..++| +++|++++ +++++|++|+|+++++..++.++. +++.|++++|+|..+...++..|
T Consensus 52 ~~Y~~-~~~~~Lr------~aia~~~~-----v~~~~I~it~G~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~~~g 118 (360)
T PRK07392 52 RHYPD-PDYRELR------LALAQHHQ-----LPPEWILPGNGAAELLTWAGRELA-QLRAVYLITPAFGDYRRALRAFG 118 (360)
T ss_pred hcCCC-cCHHHHH------HHHHHHhC-----cChhhEEECCCHHHHHHHHHHHhC-CCCeEEEECCCcHHHHHHHHHcC
Confidence 34754 4567899 99999995 788999999999999999998875 57899999999999999999999
Q ss_pred CeEEEecccCCCCc---ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 82 ATPVILPTRISENF---LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 82 ~~v~~i~~~~~~~~---~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
.+++.++++.++++ ..+++++++.. ++++++++++||||||.+++ .++|.++++++ ++ +|+||+|.++.++
T Consensus 119 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~---~~~l~~l~~~~-~~-~IiDE~y~~~~~~ 192 (360)
T PRK07392 119 ATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWS---REAILPLLEQF-AL-VVVDEAFMDFLPP 192 (360)
T ss_pred CeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcC---HHHHHHHHHHC-CE-EEEECchhhhccC
Confidence 99999999765543 35677776654 36789999999999999999 55666677789 86 5569999998776
Q ss_pred CCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHH
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 238 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (352)
+. ..++.......+++++++||||.+|++|+|+||+++++++++.+..... .+++|.+.|.++.++++. ..+.
T Consensus 193 ~~-~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~----~~~~ 265 (360)
T PRK07392 193 DA-EQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWRD--PWPVNGLAAAAAIAALAD----RDFQ 265 (360)
T ss_pred cc-ccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhCC--CCCCCHHHHHHHHHHhcc----HHHH
Confidence 53 2333222233578999999999999999999999999999988876543 356899999999999975 5677
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC-
Q 018665 239 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD- 317 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~- 317 (352)
+..++.++++++.+.+.|++++++.+. +.+++|+|++++. ++.++++.+++++||.+.||..|+.
T Consensus 266 ~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~fl~~~~~~-------------~~~~l~~~ll~~~gv~v~pg~~f~~~ 331 (360)
T PRK07392 266 QQTWAWLPPAREALFQGLASLPGLTPL-PSAANFLLVQSQG-------------SALQLQEKLLQQHRILIRDCLSFPEL 331 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCCEEEEEcCC-------------CHHHHHHHHHhhCCEEEEeCCCCCCC
Confidence 777788899999999999988888775 4778899998763 5678888877667999999998864
Q ss_pred -CCeEEEEeecCH--HHHHHHHHH
Q 018665 318 -DTCIRISYAASL--TTLQAAVER 338 (352)
Q Consensus 318 -~~~iRi~~~~~~--~~l~~~~~~ 338 (352)
++++||+++.++ +.+.+++++
T Consensus 332 ~~~~iRi~~~~~~~~~~l~~al~~ 355 (360)
T PRK07392 332 GDRYFRVAVRTEAENQRLLEALAA 355 (360)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 579999999843 455555544
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=299.70 Aligned_cols=304 Identities=22% Similarity=0.283 Sum_probs=254.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+++ +..++| +++|++++ +++++|++++|+++++..++.+++++||.|+++.|+|+.+...++..|.
T Consensus 63 ~Y~~~-~~~~Lr------~~ia~~~~-----~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~ 130 (369)
T PRK08153 63 KYGDP-ENHDLR------HALAAHHG-----VAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVAGFGG 130 (369)
T ss_pred cCCCC-ccHHHH------HHHHHHhC-----CCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHHHHcCC
Confidence 46544 588999 99999986 7889999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 83 TPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+++.+|.+.+ ..|++++.+.+. ++++++++++|+||||.++|.+++++|+++|+ + ++++|+||+|..+.+.+..
T Consensus 131 ~~~~vp~~~~---~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~-~-~~~lI~DE~y~~~~~~~~~ 205 (369)
T PRK08153 131 RLVTVPYRDD---REDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALP-E-TTLLVLDEAYCETAPAGAA 205 (369)
T ss_pred eEEEeeCCCC---CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCC-C-CcEEEEeCchhhhcCcccc
Confidence 9999998533 378999887764 67899999999999999999999999999876 6 8899999999988765421
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
.++ ....+++++++||||.+|++|+|+||+++++++++.+...... +++|++.|.++.+++++ .+++++.
T Consensus 206 -~~~---~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~~--~~~s~~~q~~~~~~l~~----~~~~~~~ 275 (369)
T PRK08153 206 -PPI---DTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNH--FGMNRIAQAAALAALKD----QAYLAEV 275 (369)
T ss_pred -hhh---hhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhcC--CCCCHHHHHHHHHHhcC----HHHHHHH
Confidence 222 2235689999999999999999999999999999988876644 56899999999999974 6788889
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec-cCCCCCCCCe
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAFGDDTC 320 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~-~g~~~~~~~~ 320 (352)
++.++++++.+.+.|++. |+.+. +.+++|+|++++... ..+.++.++|.++ ||.+. |+.. ..+++
T Consensus 276 ~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~~----------~~a~~l~~~l~~~-Gi~v~~p~~~-~~~~~ 341 (369)
T PRK08153 276 VGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRDG----------AFARAVLDGLIAR-DIFVRMPGVA-PLDRC 341 (369)
T ss_pred HHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCCc----------ccHHHHHHHHHHC-CeEEeeCCCC-CCCCe
Confidence 999999999999999876 77654 678888999875310 1577888888875 99995 6542 23579
Q ss_pred EEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 321 IRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+||+++ ++++++++++.|++++...++
T Consensus 342 iRis~~-~~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 342 IRVSCG-PDEELDLFAEALPEALEAARK 368 (369)
T ss_pred EEEecC-CHHHHHHHHHHHHHHHHHhhc
Confidence 999999 578999999999999987655
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=301.01 Aligned_cols=305 Identities=23% Similarity=0.385 Sum_probs=255.9
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
..|++ ....++| +.+|++++ +++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|
T Consensus 62 ~~y~~-~~~~~lr------~~ia~~~~-----~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g 129 (367)
T PRK02731 62 HRYPD-GSGFELK------AALAEKFG-----VDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAVG 129 (367)
T ss_pred cCCCC-CcHHHHH------HHHHHHhC-----cCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHHHcC
Confidence 34643 3457899 99999996 678899999999999999999999999999999999998888889999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++.+ ++.+|++.+++.+++++++|++++|+||||.++|.++++++++.|+ + |+++|+||+|.++.+.+..
T Consensus 130 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~-~~~li~De~y~~~~~~~~~ 204 (367)
T PRK02731 130 AKPVEVPAK---DYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVP-P-DVLVVLDEAYAEYVRRKDY 204 (367)
T ss_pred CeEEEeccc---CCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCC-C-CcEEEEECcHHHhccCcCc
Confidence 999999873 4568999999999888999999999999999999888888888774 7 8999999999987765433
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
..++... ...+++++++|+||.+|++|+|+||+++++++++.+.+.... +..+.+.|.++.++++. .++.++.
T Consensus 205 ~~~~~~~-~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~~--~~~~~~~~~~a~~~l~~----~~~~~~~ 277 (367)
T PRK02731 205 EDGLELV-AKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQP--FNVNSLALAAAVAALDD----DAFVEKS 277 (367)
T ss_pred ccHHHHH-hhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHccCC--CCCCHHHHHHHHHHhCC----HHHHHHH
Confidence 3333222 224788999999999998999999999999999988876543 45788999999999975 6778888
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
++.++++++.+.+.|++. |+.+. +..|+++|++++... ++.++++.|.++ ||.+.++..|+.++++
T Consensus 278 ~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~i~~~~~~-----------~~~~~~~~L~~~-gI~v~~~~~~~~~~~i 343 (367)
T PRK02731 278 RALNAEGMAWLTEFLAEL-GLEYI-PSVGNFILVDFDDGK-----------DAAEAYQALLKR-GVIVRPVAGYGLPNAL 343 (367)
T ss_pred HHHHHHHHHHHHHHHHHC-CCccC-CCCceEEEEECCCCC-----------CHHHHHHHHHHC-CEEEEeCCCCCCCCeE
Confidence 999999999999999988 87776 456788999986532 788999998865 9999999877667899
Q ss_pred EEEeecCHHHHHHHHHHHHHHHhh
Q 018665 322 RISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
|++++. .++++++++.|+++++.
T Consensus 344 Ris~~~-~~e~~~l~~aL~~~~~~ 366 (367)
T PRK02731 344 RITIGT-EEENRRFLAALKEFLAA 366 (367)
T ss_pred EEecCC-HHHHHHHHHHHHHHHhc
Confidence 999984 68899999999988753
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=280.70 Aligned_cols=331 Identities=23% Similarity=0.364 Sum_probs=283.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH--hcC-CCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH-
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK--ENG-LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR- 78 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~--~~~-~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~- 78 (352)
-|..-+|.+.+| +++|+++. +.+ ...+++++.+++|+|++++.+...|+++|+.-|+|.|.|+++..-++
T Consensus 116 ~fqdy~Gl~~fr------qa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~ 189 (471)
T KOG0256|consen 116 MFQDYHGLPSFR------QAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRW 189 (471)
T ss_pred hcccccCchHHH------HHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCccccccee
Confidence 366778999999 99999999 333 34688999999999999999999999999999999999999986555
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhcc------CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLT------EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~------~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
+.|++++++.....++++++.+.||+++. .+++.++++||+||-|..++++++..++++|.++ |+-+|+||+|
T Consensus 190 rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k-niHvI~DEIy 268 (471)
T KOG0256|consen 190 RTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRK-NIHVISDEIY 268 (471)
T ss_pred ccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc-ceEEEeehhh
Confidence 78999999999988899999999999884 3788999999999999999999999999999999 9999999999
Q ss_pred cccccCCCCccccccCCC----CCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHH
Q 018665 153 EHIIYAPATHTSFASLPG----MWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAA 227 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~----~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
++..|+.....|+.++.. +.+++-++.|+||.+|+||+|+|.+.. ++.++....++..+. ..|+..|..++..
T Consensus 269 a~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~--~vSs~tQ~~la~L 346 (471)
T KOG0256|consen 269 AGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFG--LVSSQTQYLLASL 346 (471)
T ss_pred cccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhcc--CCcHHHHHHHHHH
Confidence 998888776666665432 357889999999999999999999985 566777777776654 4899999999999
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
|++.+..+.++++..++++.+.+++.+.|+++ |+.++...+|.|+|+++.....+... +...++.+.+.++-++
T Consensus 347 LSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl~s~AGlF~wvDlr~lL~s~tf-----e~El~Lw~~i~~~vkl 420 (471)
T KOG0256|consen 347 LSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-GIPCLKSNAGLFCWVDLRKLLTSLTF-----EGELELWERILDNVKL 420 (471)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCceeecCCeeEEEEEhHHhcCcCCh-----HHHHHHHHHHHHhhcc
Confidence 99866557778899999999999999999999 99999999999999998765432211 1345788888887789
Q ss_pred EeccCCCCC--CCCeEEEEeec-CHHHHHHHHHHHHHHHhhhCC
Q 018665 308 ALVPGDAFG--DDTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 308 ~i~~g~~~~--~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+.||+.|. .+||+|++++. .++.++-++++|+..+.....
T Consensus 421 nlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~~~~ 464 (471)
T KOG0256|consen 421 NLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLDSQVQ 464 (471)
T ss_pred ccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHHhhhc
Confidence 999999875 58999999999 656666699999999975443
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=303.53 Aligned_cols=310 Identities=16% Similarity=0.141 Sum_probs=240.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEE--eCChHHH--HHHHHHHhcCCCCEEEecCCCCCChHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILV--SNGAKQS--ILQAVLAVCSPGDEVIIPAPFWVSYPEMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~--~~g~~~a--~~~~~~~l~~~~~~vl~~~~~~~~~~~~~ 77 (352)
.|++..|.+++| +++++++. +......+++|.. +.+++++ +...+..++.+||+|++++|+|..|...+
T Consensus 86 ~Y~~~~G~~~LR------~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~ 159 (423)
T PLN02397 86 EYLPIEGLAEFN------KLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIF 159 (423)
T ss_pred CCCCcCCCHHHH------HHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHH
Confidence 599999999999 99999997 4332333334321 2333333 43444455569999999999999999999
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+..|.+++.+++...+++.+|++.+++.++ ++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.+
T Consensus 160 ~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~-~~~vI~De~Y~~ 238 (423)
T PLN02397 160 RDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSK-NHLPFFDSAYQG 238 (423)
T ss_pred HHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEecccCC
Confidence 999999999998433457799998887774 4678888899999999999999999999999999 999999999999
Q ss_pred cccCCC--CccccccCCCCCCceEEEeccccccccccceeEEEE--c-ChhHHHH----HHhhhhccccCCChHHHHHHH
Q 018665 155 IIYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA--G-PKHFVAA----CNKIQSQFTSGASSISQKAGV 225 (352)
Q Consensus 155 ~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~--~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 225 (352)
+.+++. ...+........++++++.||||.++++|+|+||++ + ++++++. +.........+++.+.|.++.
T Consensus 239 l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 318 (423)
T PLN02397 239 FASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVA 318 (423)
T ss_pred ccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHH
Confidence 987541 223333333223579999999999999999999985 4 5555443 334443444567888999988
Q ss_pred HHhcccCCChHH---HHHHHHHHHHHHHHHHHHhcccCC----ceecCCCCceEEEeecCCccCCcccCCCCCCChHHHH
Q 018665 226 AALGLGYAGGEV---VSKMVKAFRERRDFLVKSFGELEG----VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLC 298 (352)
Q Consensus 226 ~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
.+++.+.....+ +++.++.++++++.+.+.|+++ + +.+..|++|+|+|++++ .+++
T Consensus 319 ~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~-~~~~~~~~~~p~gg~fl~~~l~----------------~~~~ 381 (423)
T PLN02397 319 TILGDPELFSEWTKELKGMADRIISMRQKLYDALEAR-GSPGDWSHITKQIGMFSFTGLN----------------KEQV 381 (423)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcccCCceEEEecCCC----------------HHHH
Confidence 888762111133 6778889999999999999987 5 77788999999999863 3588
Q ss_pred HHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHh
Q 018665 299 RYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 299 ~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~ 344 (352)
++|++++||.+.++ + |++++. +.+.+++++++|+++++
T Consensus 382 ~~Ll~~~~V~v~~~------~--Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 382 DRMTKEYHIYMTRD------G--RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred HHHHHhCCEEECCC------C--eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 99998999999743 2 999984 88999999999999985
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=295.50 Aligned_cols=301 Identities=19% Similarity=0.247 Sum_probs=246.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.| ++.+..++| +.+|++++ +++++|++|+|+++++..++.++ .+++ +++++|+|..+...++..|.
T Consensus 51 ~y-~~~~~~~lr------~~ia~~~~-----~~~~~i~it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~~~g~ 116 (356)
T PRK08056 51 RY-PDVEYRHLH------QALARHHQ-----VPASWILAGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYRRALQQVGC 116 (356)
T ss_pred cC-cCccHHHHH------HHHHHHhC-----cChhhEEECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHHHHHHHcCC
Confidence 45 445688999 99999986 78899999999999999998887 5564 78889999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++.+.++.+| +++++.++++++++++++||||||..++.+++++|+++|+++ ++++|+||+|.++.+.+...
T Consensus 117 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~ 194 (356)
T PRK08056 117 EIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSL-NIALILDEAFIDFIPDETGF 194 (356)
T ss_pred eEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhc-CCEEEEecchhccCCcchHH
Confidence 9999998765666666 455566677899999999999999999999999999999999 99999999999887644222
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
.+. +. ..++++++.|+||.+|++|+|+||+++ ++++++.+..... .++++.+.+.++..+++. ..+.++.
T Consensus 195 ~~~--~~-~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~--~~~~~~~~~~~a~~~l~~----~~~~~~~ 265 (356)
T PRK08056 195 IPQ--LA-DNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQM--PWSINAFAALAGEVILQD----RAYQQAT 265 (356)
T ss_pred HHH--hc-cCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCC--CCchhHHHHHHHHHHhCC----HHHHHHH
Confidence 222 11 246889999999999999999999998 4677777766443 345788888888888864 6778888
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--CC
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DT 319 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~~ 319 (352)
++.++++++.+.+.|++++++.+.+ ..++|+|++++. +..++++.|.++ ||.+.+|..|.. ++
T Consensus 266 ~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~-------------~~~~~~~~l~~~-gI~v~~~~~f~~~~~~ 330 (356)
T PRK08056 266 WQWLAEEGARFYQALCALPLLTVWP-GRANYLFLRCER-------------PDIDLQRALLTQ-RILIRSCANYPGLDSR 330 (356)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEcC-CCCcEEEEEcCC-------------ChHHHHHHHHHC-CeEEEECCCCCCCCCC
Confidence 8999999999999999887877654 467889998874 456888888864 999999998743 46
Q ss_pred eEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 320 CIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 320 ~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
++||+++. .++.+++++.|+++++
T Consensus 331 ~iRis~~~-~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 331 YYRVAIRS-AAENERLLAALRNVLT 354 (356)
T ss_pred EEEEEEcC-HHHHHHHHHHHHHHHc
Confidence 99999986 4677788888877653
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=296.84 Aligned_cols=294 Identities=20% Similarity=0.281 Sum_probs=245.8
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|++ .+..++| +.++++++ +++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.
T Consensus 74 ~Y~~-~~~~~Lr------~aia~~~~-----v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~ 141 (370)
T PRK09105 74 RYDL-ELEDDLR------TLFAAQEG-----LPADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAADAQGA 141 (370)
T ss_pred CCCC-chHHHHH------HHHHHHhC-----cChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCC
Confidence 4644 4488899 99999986 7899999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++.+. ++.+|++++++. .++++++++++||||||.+++.++++++++.+ ++ ++++|+||+|.++.. .
T Consensus 142 ~~~~v~~~~--~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~-~~-~~~lIvDEaY~~f~~--~-- 212 (370)
T PRK09105 142 PVAKVPLRA--DGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLLANK-PA-GSVLLVDEAYIHFSD--A-- 212 (370)
T ss_pred eEEEecCCC--CCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhC-CC-CcEEEEECchHHhcc--C--
Confidence 999999863 467899999877 45788999999999999999999999998865 57 899999999987642 1
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
.+...+...+++++++.|+||.+|++|+|+||+++++++++.+... . ...++.+.+.++.+++.. .+++++.+
T Consensus 213 ~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~-~--~~~~~~~~~~aa~~~L~~----~~~~~~~~ 285 (370)
T PRK09105 213 PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF-G--HNPLPVPAAAAGLASLRD----PKLVPQRR 285 (370)
T ss_pred cchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc-C--CCCcCHHHHHHHHHHHhC----HHHHHHHH
Confidence 2333333335789999999999999999999999999999988775 2 334888888888888875 67888999
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-CCCeE
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-DDTCI 321 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-~~~~i 321 (352)
+.++++++.+.+.|++. |+.+..+.++++ +++++. +..++++.|.++ ||.+ +..|. .++++
T Consensus 286 ~~~~~~r~~l~~~L~~~-g~~~~~~~~~f~-~~~~~~-------------~~~~l~~~L~~~-gI~v--~~~~~~~~~~~ 347 (370)
T PRK09105 286 AENAAVREDTIAWLKKK-GYKCTPSQANCF-MVDVKR-------------PAKAVADAMAKQ-GVFI--GRSWPIWPNWV 347 (370)
T ss_pred HHHHHHHHHHHHHHHHC-CCCcCCCCCcEE-EEeCCC-------------CHHHHHHHHHHC-CcEE--ecCCCCCCCeE
Confidence 99999999999999987 888887777775 567652 678899999977 9988 33343 36899
Q ss_pred EEEeecCHHHHHHHHHHHHHHH
Q 018665 322 RISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~~ 343 (352)
||+++. +++++++++.|++++
T Consensus 348 Ris~~~-~~~~~~l~~al~~~~ 368 (370)
T PRK09105 348 RVTVGS-EEEMAAFRSAFAKVM 368 (370)
T ss_pred EEEcCC-HHHHHHHHHHHHHHh
Confidence 999985 577889988888765
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=295.65 Aligned_cols=296 Identities=20% Similarity=0.318 Sum_probs=244.5
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.| ++.+..++| +++|++++ +++++|++|+|+++++..++.+++++||.|++++|+|..+...++..|.
T Consensus 56 ~y-~~~~~~~lr------~aia~~~~-----~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~ 123 (353)
T PRK05387 56 LY-PDPNADALR------QAIAAYYG-----LDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPVYAGLYGI 123 (353)
T ss_pred cC-CCCcHHHHH------HHHHHHhC-----CCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHHHcCC
Confidence 46 455779999 99999996 7889999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++ .++.+|++.+++ ..+++++++||||||.++|.+++++|++++ + ++++|+||+|.++. +...
T Consensus 124 ~~~~v~~~--~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~--~-~~~livDe~y~~~~--~~~~ 192 (353)
T PRK05387 124 PYEEIPLD--DDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERILAAN--P-DSVVVIDEAYVDFG--GESA 192 (353)
T ss_pred EEEEeecC--CCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhC--C-CcEEEEeCcccccC--Ccch
Confidence 99999985 456789999874 457889999999999999988888877643 4 89999999998753 2211
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcc-ccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
.++ ....+++++++|+||.+|++|+|+||+++++++++.+....... .++.+.+.|.++.+++.. .+++++.
T Consensus 193 ~~~---~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~ 265 (353)
T PRK05387 193 IPL---IDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIED----EAYFEET 265 (353)
T ss_pred HHH---HhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcC----HHHHHHH
Confidence 222 12246889999999999999999999999999999988765443 456889999999898874 6778888
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
+++++++++.+.+.|+++ |+.+. +.+++++|+++++. ++.++++.|.++ ||.+.+......++++
T Consensus 266 ~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~------------~~~~~~~~l~~~-gi~v~~~~~~~~~~~i 330 (353)
T PRK05387 266 RAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHPSH------------DAAELAAKLRER-GIIVRHFNKPRIDQFL 330 (353)
T ss_pred HHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECCCC------------CHHHHHHHHHHC-CEEEEECCCCCCCCeE
Confidence 999999999999999988 77764 56677889988753 778999998765 9999754333346799
Q ss_pred EEEeecCHHHHHHHHHHHHHHHh
Q 018665 322 RISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~~~ 344 (352)
|++++ +.++++++++.|++++.
T Consensus 331 Ris~~-~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 331 RITIG-TDEEMEALVDALKEILA 352 (353)
T ss_pred EEEeC-CHHHHHHHHHHHHHHhh
Confidence 99998 56899999999998764
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=290.43 Aligned_cols=294 Identities=24% Similarity=0.420 Sum_probs=239.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+ +.+..++| +.+|++++ +++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.
T Consensus 55 ~y~-~~~~~~lr------~~ia~~~~-----~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~ 122 (351)
T PRK14807 55 IYP-DPTAEKLR------EELARYCS-----VVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGA 122 (351)
T ss_pred CCC-CccHHHHH------HHHHHHhC-----CCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCC
Confidence 354 44568899 99999986 7789999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+++.++++ .++.+|++.+++++++ +++++++++|+||||.+++ .+++.++|+++ +.++|+||+|.++. +..
T Consensus 123 ~~~~v~~~--~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~---~~~l~~l~~~~-~~~~ivDe~y~~~~--~~~ 194 (351)
T PRK14807 123 VEIPVKLK--EDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIE---REDIIKIIEKS-RGIVVVDEAYFEFY--GNT 194 (351)
T ss_pred eEEEeecC--CCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCC---HHHHHHHHHhC-CCEEEEeCcchhhc--ccc
Confidence 99999986 3466899999999974 8999999999999999999 55555556677 77899999998763 222
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
..+. ....+++++++|+||.+|++|+|+||+++++++++.+...... +..+.+.|.++..+++. .++++.
T Consensus 195 ~~~~---~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~-----~~~~~~ 264 (351)
T PRK14807 195 IVDV---INEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSP--YNINSLSQVIALKVLRT-----GVLKER 264 (351)
T ss_pred hHHH---hhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccCC--CCcCHHHHHHHHHHHhH-----HHHHHH
Confidence 2222 1224789999999999999999999999999999998876543 45788999999999873 456777
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC-CCCCCe
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA-FGDDTC 320 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~-~~~~~~ 320 (352)
.+.++++++.+.+.|++++|+.+. +.+|+|+|++++ +..++.+.|.++ ||.+.++.. ++.+++
T Consensus 265 ~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~--------------~~~~~~~~l~~~-gV~v~~~~~~~~~~~~ 328 (351)
T PRK14807 265 VNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFK--------------DADYVYQGLLER-GILVRDFSKVEGLEGA 328 (351)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcC--------------CHHHHHHHHHHC-CEEEEECCCCCCCCCe
Confidence 778888899999999887788775 456778998885 566788888865 999987653 345689
Q ss_pred EEEEeecCHHHHHHHHHHHHHHH
Q 018665 321 IRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
+||+++.+ ++.+++++.|++++
T Consensus 329 iRis~~~~-~~~~~l~~~l~~~~ 350 (351)
T PRK14807 329 LRITVSSC-EANDYLINGLKELL 350 (351)
T ss_pred EEEEcCCH-HHHHHHHHHHHHhh
Confidence 99999874 66778888877653
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=292.99 Aligned_cols=297 Identities=21% Similarity=0.328 Sum_probs=240.1
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCC-CEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~-~~vl~~~~~~~~~~~~~~~~ 80 (352)
+.| |+.+..++| +++|++++ +++++|++|+|+++++..++.+++++| |+|+++.|+|..|...++..
T Consensus 55 ~~Y-p~~~~~~Lr------~aia~~~~-----~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~ 122 (354)
T PRK04635 55 NRY-PECQPPELI------NAYSAYAG-----VAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAETF 122 (354)
T ss_pred ccC-CCCCHHHHH------HHHHHHhC-----cCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHc
Confidence 345 445689999 99999987 889999999999999999999999888 89999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.+|++. ++.+|++.++. + +++++|++++||||||.++|.+++++|++.|+ ++++|+||+|.++...
T Consensus 123 g~~v~~v~~~~--~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~---~~~vivDeay~~~~~~-- 193 (354)
T PRK04635 123 NVGVKALPLTA--DYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTP---DAIVVVDEAYIEFCPE-- 193 (354)
T ss_pred CCEEEEEecCC--CCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCC---CcEEEEeCchHhhccC--
Confidence 99999999863 46689888873 4 58899999999999999999777777766543 6899999999886522
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
.+...+...++++++++|+||.+|++|+|+||+++++++++.+..... .++.+.+.+.++.+++.+. ..+++++
T Consensus 194 --~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~~--~~~~~~~~~~~a~~~l~~~--~~~~~~~ 267 (354)
T PRK04635 194 --YSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRVIA--PYPVPLPVSEIATQALSEA--GLARMKF 267 (354)
T ss_pred --cchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhcc--cHHHHHH
Confidence 233333334578999999999999999999999999999998876543 3457778888888888642 1355677
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCe
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 320 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~ 320 (352)
.++.++++++.+.+.|++++++.+.++ .|.|+|++++ +..++.+.|.+ .||.+..++....+++
T Consensus 268 ~~~~~~~~r~~l~~~L~~~~~~~~~~~-~g~f~~~~~~--------------~~~~~~~~l~~-~gv~v~~~~~~~~~~~ 331 (354)
T PRK04635 268 QVLDLNAQGARLQAALSMYGGAKVLEG-NGNYVLAKFD--------------DVDAVFKALWD-AGIVARAYKDPRLANC 331 (354)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceECCC-CCcEEEEECC--------------CHHHHHHHHHH-CCEEEEECCCCCCCCe
Confidence 778889999999999998866777655 4667888875 45677777765 5999987654445789
Q ss_pred EEEEeecCHHHHHHHHHHHHHH
Q 018665 321 IRISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~ 342 (352)
+||+++. .++++++++.|++.
T Consensus 332 lRis~~~-~e~~~~l~~al~~~ 352 (354)
T PRK04635 332 IRFSFSN-RAETDKLIGLIRNQ 352 (354)
T ss_pred EEEEeCC-HHHHHHHHHHHHHh
Confidence 9999874 68999999998764
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=285.07 Aligned_cols=285 Identities=16% Similarity=0.154 Sum_probs=234.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCC-CCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYT-PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.| |++. .+|| +.+|++++ +. +++|++|+|+++++..+.. ++++|+ |+++.|+|..|...++..|
T Consensus 50 ~Y-p~~~-~~L~------~~ia~~~~-----~~~~~~I~i~~Gs~e~i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~~~g 114 (339)
T PRK06959 50 RL-PEDD-DGLA------ACAARYYG-----APDAAHVLPVAGSQAAIRALPA-LLPRGR-VGIAPLAYSEYAPAFARHG 114 (339)
T ss_pred hC-CCch-HHHH------HHHHHHhC-----CCCcccEEECcCHHHHHHHHHH-hcCCCe-EEEcCCCcHHHHHHHHHCC
Confidence 35 4444 8899 99999997 54 5899999999999986654 567665 8999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++.+. +.+ .+..+++++++||||||.+++.+++++|++.|+++ +.++|+||+|.++...
T Consensus 115 ~~~~~v~~~~--------~~~----~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~-~~~vI~DEay~~~~~~--- 178 (339)
T PRK06959 115 HRVVPLDEAA--------DTL----PAALTHLIVVNPNNPTAERLPAARLLRWHAQLAAR-GGTLIVDEAFADTLPA--- 178 (339)
T ss_pred CEEEeecccc--------hhc----cccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEECCCccCCCc---
Confidence 9999887642 222 22456899999999999999999999999999998 8999999999987532
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
.++..+. ..+++++++||||.+|++|+|+||+++++++++.+.+.... ++.|.+.|.++.+++++ .++.++.
T Consensus 179 -~s~~~~~-~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~~~~~--~~vs~~~q~a~~~~L~~----~~~~~~~ 250 (339)
T PRK06959 179 -ASLAAHT-DRPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAALRDALGA--WTVSGPARHAVRAAFAD----AAWQAAM 250 (339)
T ss_pred -ccchhcc-CCCCEEEEecChhhcCCcchheEEEecCHHHHHHHHHhcCC--CCCcHHHHHHHHHHhCc----HHHHHHH
Confidence 3444433 25789999999999999999999999999999999887654 44789999999999985 6778888
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
++.++++++.+.+.|+++ |+.+. ..++|+|++++ ++.++.+.|.++ ||.+.. |+..+++
T Consensus 251 ~~~~~~~r~~l~~~L~~~-g~~~~--~~~~f~~~~~~--------------~~~~l~~~l~~~-GI~vr~---~~~~~~l 309 (339)
T PRK06959 251 RERLAADGARLAALLRAH-GFAVH--ATPLFSWTDDP--------------RAAALHAALARR-GIWTRY---FAPPPSV 309 (339)
T ss_pred HHHHHHHHHHHHHHHHHC-CCCcc--CcceEEEEeCC--------------CHHHHHHHHHhC-CeEEEE---CCCCCeE
Confidence 999999999999999988 77664 35788898865 466888888876 999974 4456799
Q ss_pred EEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 322 RISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
||++..+.++.+++++.|+++++.+.
T Consensus 310 Risi~~~~~e~~~l~~al~~~~~~~~ 335 (339)
T PRK06959 310 RFGLPADEAEWQRLEDALAECVPTLA 335 (339)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHh
Confidence 99997777899999999998887654
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=289.83 Aligned_cols=293 Identities=22% Similarity=0.363 Sum_probs=242.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
+|++ .+..++| +.+|++++ ... ++|++++|+++++..++.+++++||+|++++|+|..+...++..|
T Consensus 59 ~Y~~-~~~~~lr------~~ia~~~~-----~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g 126 (356)
T PRK04870 59 RYPD-PRAAALK------AALRAAMG-----VPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLAG 126 (356)
T ss_pred cCCC-CCHHHHH------HHHHHHhC-----cCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHHcC
Confidence 4654 6789999 99999996 333 589999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
.+++.++++ .++.+|++++++.++ .+++++++++||||||.+++.+++++|+++| ++++|+||+|..+....
T Consensus 127 ~~~~~i~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~----~~~ii~De~y~~~~~~~- 199 (356)
T PRK04870 127 LEFVGVPLT--ADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAA----PGLVVVDEAYQPFAGDS- 199 (356)
T ss_pred CEEEEecCC--CCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHC----CCEEEEECCchhhcCcc-
Confidence 999999986 346799999999986 4889999999999999999988888888776 45788899998865321
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
..+ .+ ...++++++.|+|| ++++|+|+||+++++++++.+...... ++.+.+.|.++..+++. .+.+++
T Consensus 200 -~~~--~~-~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~~~--~~~~~~~q~~a~~~l~~----~~~~~~ 268 (356)
T PRK04870 200 -WLP--RL-ARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPP--YNVNVLTQATALFALEH----VDVLDA 268 (356)
T ss_pred -hHH--HH-hhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHccCC--CcCCHHHHHHHHHHHhC----HHHHHH
Confidence 111 11 22468999999999 788999999999999999988776533 45888889888888874 456788
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--C
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D 318 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~ 318 (352)
.++.++++++.+.+.|++++++.+. +.+|+|+|++++ +..++.+.|.+ +||.+.++..|+. +
T Consensus 269 ~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~--------------~~~~~~~~l~~-~gI~v~~~~~f~~~~~ 332 (356)
T PRK04870 269 QAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVP--------------DAAAVFDGLKT-RGVLVKNLSGMHPLLA 332 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--------------CHHHHHHHHHH-CCEEEEECCCCCCCCC
Confidence 8889999999999999988888664 566778999876 35677777765 5999999987753 6
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHH
Q 018665 319 TCIRISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~ 342 (352)
+++||+++. .++.+++++.|+++
T Consensus 333 ~~iRis~~~-~~~~~~l~~al~~~ 355 (356)
T PRK04870 333 NCLRVTVGT-PEENAQFLAALKAA 355 (356)
T ss_pred CeEEEeCCC-HHHHHHHHHHHHHh
Confidence 799999996 57888888888775
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=289.17 Aligned_cols=295 Identities=25% Similarity=0.434 Sum_probs=247.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+++.+ +++| +.+|++++ +++++|++++|+++++..++.+++++||+|++++|+|..+...++..|.
T Consensus 50 ~y~~~~~-~~lr------~~ia~~~~-----~~~~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~ 117 (346)
T TIGR01141 50 RYPDPDP-AELK------QALADYYG-----VDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGA 117 (346)
T ss_pred cCCCCCH-HHHH------HHHHHHhC-----cChHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHHcCC
Confidence 4654444 8899 99999997 6788999999999999999999999999999999999988888999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++.+ +.+|++++++.++++++++++++|+||||..+|.++++++++.++ + |+++|+|++|+.+...+. .
T Consensus 118 ~~~~~~~~~~--~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~-~-~~~ii~D~~y~~~~~~~~-~ 192 (346)
T TIGR01141 118 EVVKVPLDED--GQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTP-E-DALVVVDEAYGEFSGEPS-T 192 (346)
T ss_pred eEEEeccCCC--CCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-C-CcEEEEECchhhhcCCcc-H
Confidence 9999998743 568999999988888999999999999999999999999999887 8 999999999997654321 1
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
.... ...+++++++|+||.+|++|+|+||+++++++++.+...... ++.+++.|.++.++++. ..+..+.+
T Consensus 193 ~~~~---~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~----~~~~~~~~ 263 (346)
T TIGR01141 193 LPLL---AEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAP--FNLSRLAQAAAIAALRD----DDFIEKTV 263 (346)
T ss_pred HHHH---hhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccCC--CCCCHHHHHHHHHHhCC----HHHHHHHH
Confidence 1111 123578999999999988999999999999999988776443 45788999999888875 45788889
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC-CCeE
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCI 321 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-~~~i 321 (352)
++++++++.+.+.|++++|+++. +..|+++|++++. +++++.++|.++ ||.+.||..|+. ++++
T Consensus 264 ~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~-------------~~~~~~~~L~~~-gI~v~~g~~f~~~~~~i 328 (346)
T TIGR01141 264 EEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPR-------------DADALFEALLEK-GIIVRDLNSYPGLPNCL 328 (346)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCC-------------CHHHHHHHHHHC-CeEEEeCCCcCCCCCeE
Confidence 99999999999999988888864 4567889998864 467888888875 999999987643 7899
Q ss_pred EEEeecCHHHHHHHHHHH
Q 018665 322 RISYAASLTTLQAAVERI 339 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l 339 (352)
|++++ ++++++++++.|
T Consensus 329 Rls~~-~~~~i~~~~~~l 345 (346)
T TIGR01141 329 RITVG-TREENDRFLAAL 345 (346)
T ss_pred EEecC-CHHHHHHHHHHh
Confidence 99987 678999998876
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=285.75 Aligned_cols=292 Identities=26% Similarity=0.452 Sum_probs=241.2
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEE-eCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILV-SNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~-~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
|+ +....++| +.+|++++ +++++|++ ++|+++++..++.+++++||+|++++|+|..+...++..|.
T Consensus 66 y~-~~~~~~lr------~~ia~~~~-----~~~~~i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~ 133 (361)
T PRK00950 66 YP-EPDAPELR------EALSKYTG-----VPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGA 133 (361)
T ss_pred CC-CCCHHHHH------HHHHHHhC-----CCHHHEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCC
Confidence 43 34458899 99999986 77899999 78889999999999989999999999999999989999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++.+ .++.+|++.+++.++++++++++++|+||||..+| .+++.++|+++ |+++|+||+|.++. +...
T Consensus 134 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~---~~~l~~l~~~~-~~~li~De~y~~~~--~~~~ 205 (361)
T PRK00950 134 KPVYAKRE--EDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIP---EEDIRKILEST-DALVFVDEAYVEFA--EYDY 205 (361)
T ss_pred EEEEeecC--CCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcC---HHHHHHHHHHC-CcEEEEECchhhhC--ccch
Confidence 99999854 45678999999999888899999999999999999 66677777899 99999999998764 2111
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
.++ ....+++++++|+||.+|++|+|+||+++++++++.+.+....+ +.+.+.+.++..+++. .+++++..
T Consensus 206 ~~~---~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~l~~----~~~~~~~~ 276 (361)
T PRK00950 206 TPL---ALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTPF--SLTRLSQAAAIAALSD----KEYIEKSI 276 (361)
T ss_pred HHH---HHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcC----HHHHHHHH
Confidence 222 12246889999999999999999999999999999888765543 4788899888888874 57788888
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--CCe
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTC 320 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~~~ 320 (352)
+.++++++.+.+.|+ +.+ .+.+++++|++++.. ++.++++.|.++ ||.+.||..|.. +++
T Consensus 277 ~~~~~~r~~l~~~l~----~~~-~~~~~~~i~~~~~~~------------~~~~~~~~l~~~-gv~v~~~~~f~~~~~~~ 338 (361)
T PRK00950 277 EHGIKSREYLYNELP----FKV-YPSEANFVLVDVTPM------------TAKEFCEELLKR-GVIVRDCTSFRGLGDYY 338 (361)
T ss_pred HHHHHHHHHHHhhcC----eeE-CCCcceEEEEECCCC------------CHHHHHHHHHHC-CEEEeeCCccCCCCCCe
Confidence 888888888888876 343 356788899988432 788999999875 999999887743 569
Q ss_pred EEEEeecCHHHHHHHHHHHHHHH
Q 018665 321 IRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
+|++++ +.++++++++.|++++
T Consensus 339 lRis~~-~~~~~~~l~~~L~~il 360 (361)
T PRK00950 339 IRVSIG-TFEENERFLEILKEIV 360 (361)
T ss_pred EEEECC-CHHHHHHHHHHHHHHh
Confidence 999998 4678999999999876
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=278.53 Aligned_cols=278 Identities=15% Similarity=0.164 Sum_probs=227.5
Q ss_pred ChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecc
Q 018665 10 TLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~ 89 (352)
..+|| +++|++++ .++|++|+|+++++..+. .+.+||+|++++|+|..+...++..|.+++.+++
T Consensus 51 ~~~Lr------~~ia~~~~-------~~~I~it~Gs~~al~~~~--~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~ 115 (330)
T PRK05664 51 DDGLE------AAARAYYG-------APQLLPVAGSQAAIQALP--RLRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDE 115 (330)
T ss_pred hHHHH------HHHHHHhC-------CCCEEECcCHHHHHHHHH--HccCCCEEEEcCCChHHHHHHHHHcCCeEEEech
Confidence 37888 99999984 579999999999998775 3578999999999999999999999999999875
Q ss_pred cCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCC
Q 018665 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 169 (352)
Q Consensus 90 ~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~ 169 (352)
+ ++++.++ +++++++++||||||.+++.+++++|+++|+++ +++||+||+|.++. ...++..+.
T Consensus 116 ~----------~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~-~~~iI~DE~y~~~~----~~~s~~~~~ 179 (330)
T PRK05664 116 A----------EVEAALD-SLDVLVVVNPNNPTGRRFDPARLLAWHARLAAR-GGWLVVDEAFMDNT----PQHSLAACA 179 (330)
T ss_pred h----------hHhhhhc-CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhc-CCEEEEECCcccCC----Ccccccccc
Confidence 3 2444443 677889999999999999999999999999999 99999999997653 123455554
Q ss_pred CCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Q 018665 170 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 249 (352)
Q Consensus 170 ~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (352)
. .+++++++||||.+|++|+|+||+++++++++.+...... ++.+.+.+.++.++++. ..+.++.++.+++++
T Consensus 180 ~-~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~r 252 (330)
T PRK05664 180 H-RPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAELLGP--WTVSGPTRWLAQAALAD----TPWQRRQRERLLAAS 252 (330)
T ss_pred c-CCCEEEEeeccccccCCCcceEEEEeCHHHHHHHHHhcCC--CCCCHHHHHHHHHHHhC----hHHHHHHHHHHHHHH
Confidence 3 5789999999999999999999999999999998876543 45788899999999975 466678888999999
Q ss_pred HHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeecCH
Q 018665 250 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASL 329 (352)
Q Consensus 250 ~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~~~ 329 (352)
+.+.+.|+++ ++... +..++|+|++++ ++.++.+.|.++ ||.+.. |+.++++||+++.+.
T Consensus 253 ~~l~~~L~~~-~~~~~-~~~~~f~~~~~~--------------~~~~~~~~l~~~-gi~v~~---f~~~~~iRis~~~~~ 312 (330)
T PRK05664 253 QRLAALLRRH-GLTPA-GGCALFQWVRTE--------------DAAALHEFLARR-GILTRL---FEQPASLRFGLPADE 312 (330)
T ss_pred HHHHHHHHHC-CCccc-CCcceEEEEecC--------------CHHHHHHHHHHC-CeEEEE---CCCCCeEEEECCCCH
Confidence 9999999987 65421 222367777754 567888888765 999974 446789999999766
Q ss_pred HHHHHHHHHHHHHHhh
Q 018665 330 TTLQAAVERIKKGLLT 345 (352)
Q Consensus 330 ~~l~~~~~~l~~~~~~ 345 (352)
++.+++.+.|++..++
T Consensus 313 ~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 313 ADWARLDQALLAYRKE 328 (330)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7788888888777654
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=281.61 Aligned_cols=285 Identities=21% Similarity=0.306 Sum_probs=238.5
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+++. .+++| +.++++++ +++++|++|+|+++++..+... +.+| +|++++|+|..+...++..|.
T Consensus 43 ~y~~~~-~~~lr------~~la~~~~-----~~~~~i~~t~G~~~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~~~g~ 108 (330)
T TIGR01140 43 RYPDPE-YDELR------AAAAAYYG-----LPAASVLPVNGAQEAIYLLPRL-LAPG-RVLVLAPTYSEYARAWRAAGH 108 (330)
T ss_pred hCCCcc-HHHHH------HHHHHHhC-----CChhhEEECCCHHHHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHHHcCC
Confidence 465555 49999 99999986 6789999999999999987665 4566 799999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++ |++++++.++ +++++++++|+||||.+++.+++++|+++|+++ |+++|+||+|.++...
T Consensus 109 ~~~~~~---------d~~~l~~~~~-~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~---- 173 (330)
T TIGR01140 109 EVVELP---------DLDRLPAALE-ELDVLVLCNPNNPTGRLIPPETLLALAARLRAR-GGWLVVDEAFIDFTPD---- 173 (330)
T ss_pred EEEEeC---------CHHHHHhhcc-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhc-CCEEEEECcccccCCc----
Confidence 998886 7888888884 677899999999999999999999999999999 9999999999887643
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
.++.......+++++++|+||.+|++|+|+||+++++++++.+...... +++|++.|.++..+++. .++.+..+
T Consensus 174 ~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~~--~~~s~~~q~~~~~~l~~----~~~~~~~~ 247 (330)
T TIGR01140 174 ASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLREALGP--WTVNGPARAAGRAALAD----TAWQAATR 247 (330)
T ss_pred cchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHhcCCC--CCchHHHHHHHHHHHhc----hHHHHHHH
Confidence 2332222235789999999999999999999999999999998876543 45788999999999985 56777888
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC--CCCe
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTC 320 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~--~~~~ 320 (352)
+.++++++.+.+.|++++.+++. +.+|+|+|++++ +..+++++|.++ ||.+.||..|. ..++
T Consensus 248 ~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~--------------~~~~l~~~l~~~-gi~v~pg~~f~~~~~~~ 311 (330)
T TIGR01140 248 ARLAAERARLAALLARLGGLEVV-GGTALFLLVRTP--------------DAAALHEALARR-GILIRDFDNFPGLDPRY 311 (330)
T ss_pred HHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcC--------------CHHHHHHHHHHC-CEEEEECCCCCCCCCCE
Confidence 99999999999999998546554 567889999876 456899999875 99999999884 3479
Q ss_pred EEEEeecCHHHHHHHHHHH
Q 018665 321 IRISYAASLTTLQAAVERI 339 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l 339 (352)
+||+++.+.++ ++++..|
T Consensus 312 iRi~~~~~~~~-~~~~~~l 329 (330)
T TIGR01140 312 LRFALPTDEEN-DRLEEAL 329 (330)
T ss_pred EEEEecCHHHH-HHHHHhh
Confidence 99999986566 7777665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=280.60 Aligned_cols=292 Identities=17% Similarity=0.281 Sum_probs=237.1
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+++.|..++| +++|++++ +++++|++|+|+++++..++. + ++ +.++++.|+|..+...++..|.
T Consensus 53 ~Y~~~~g~~~lr------~aia~~~~-----~~~~~I~it~Ga~~al~~~~~-l-~~-~~viv~~P~y~~~~~~~~~~G~ 118 (349)
T PRK07908 53 AYPSTEDERRAR------AAVAARHG-----RTPDEVLLLAGAAEGFALLAR-L-RP-RRAAVVHPSFTEPEAALRAAGI 118 (349)
T ss_pred cCCCccchHHHH------HHHHHHhC-----cChhhEEECCCHHHHHHHHHh-c-CC-CeEEEeCCCChHHHHHHHHcCC
Confidence 477778999999 99999986 788999999999999998887 4 55 5678899999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++.+ +.+|++.+ +++++++++++||||||.++|.+ +|.++|+ + +.++|+||+|+++.. +. .
T Consensus 119 ~i~~v~~~~~--~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~---~l~~l~~-~-~~~iIvDe~y~~~~~-~~-~ 185 (349)
T PRK07908 119 PVHRVVLDPP--FRLDPAAV----PDDADLVVIGNPTNPTSVLHPAE---QLLALRR-P-GRILVVDEAFADAVP-GE-P 185 (349)
T ss_pred EEEeeccCcc--cCcChhHh----ccCCCEEEEcCCCCCCCCCcCHH---HHHHHHh-c-CCEEEEECcchhhcc-CC-c
Confidence 9999998743 66888755 34788999999999999999954 5566665 4 667888999998743 32 3
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
.++... +.+++++++|+||.+|++|+|+||+++++++++.+...... +..+++.+.++..+++.. ...++++.+
T Consensus 186 ~~l~~~--~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~--~~~~~~~~~ 259 (349)
T PRK07908 186 ESLAGD--DLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAH--WPVGTLQLEAIAACCAPR--AVAEAAADA 259 (349)
T ss_pred cccccc--cCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCCC--CCccHHHHHHHHHHhccc--chHHHHHHH
Confidence 444432 24689999999999999999999999999999998876544 446777777777776631 246778889
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--CCe
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTC 320 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~~~ 320 (352)
+.++++++.+.+.|+++ ++.+..+++|+|+|++++ +...+.+.|.+ +||.+.||..|.. +++
T Consensus 260 ~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~--------------~~~~~~~~l~~-~gI~v~~g~~f~~~~~~~ 323 (349)
T PRK07908 260 ARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVP--------------DAELLRKRLRE-RGIAVRRGDTFPGLDPDY 323 (349)
T ss_pred HHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECC--------------cHHHHHHHHHh-CCEEEEECCCCCCCCCCe
Confidence 99999999999999988 888888889999999986 34567776654 5999999988753 689
Q ss_pred EEEEeecCHHHHHHHHHHHHHHHh
Q 018665 321 IRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
+||+++. +++++++++.|++++.
T Consensus 324 vRis~~~-~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 324 LRLAVRP-RAEVPVLVQALAEILK 346 (349)
T ss_pred EEEEeCC-CccHHHHHHHHHHHHh
Confidence 9999964 5788999999988765
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=285.03 Aligned_cols=299 Identities=24% Similarity=0.396 Sum_probs=243.0
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.+| ++.|..++| +.+|++++ +++++|++++|+++++..++..++++||+|+++.|+|..+...++..|
T Consensus 52 ~~y-~~~g~~~lr------~~ia~~~~-----~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g 119 (352)
T PRK03321 52 NRY-PDMGAVELR------AALAEHLG-----VPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQVAG 119 (352)
T ss_pred CcC-CCCcHHHHH------HHHHHHhC-----cCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHHcC
Confidence 346 567899999 99999996 678899999999999999999999999999999999998888999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++++++ +.+|++.+++.++++++++++++|+||||.++|.+++.++++.+ ++ ++++|+||+|.++.+.+..
T Consensus 120 ~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~-~~-~~~ii~De~y~~~~~~~~~ 195 (352)
T PRK03321 120 ATPVQVPLTPD--HTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLDAV-PA-DVLVVLDEAYVEYVRDDDV 195 (352)
T ss_pred CEEEEccCCCC--CCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CC-CeEEEEechHHHhccCcCC
Confidence 99999998633 56899999999988999999999999999999977777776654 47 9999999999998776543
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
..++.... ..+++++++|+||.+|++|+|+||+++++++++.+.+.. ..++.|.+.|.++.+++.. .+...+.
T Consensus 196 ~~~~~~~~-~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~--~~~~~s~~~q~~a~~~l~~----~~~~~~~ 268 (352)
T PRK03321 196 PDGLELVR-DHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVA--VPFSVNSLAQAAAIASLAA----EDELLER 268 (352)
T ss_pred CcHHHHHh-hCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcC----HHHHHHH
Confidence 33333232 247899999999999999999999999999999988764 3456899999988888874 3334444
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
.+.+.++++.+.+.|++. ++.+. +.+|+|+|++++. +..++.+.|.+ .||.+.+ | .+.++
T Consensus 269 ~~~~~~~r~~~~~~L~~~-~~~~~-~~~g~~i~i~l~~-------------~~~~~~~~l~~-~gI~v~~---~-~~~~i 328 (352)
T PRK03321 269 VDAVVAERDRVRAALRAA-GWTVP-PSQANFVWLPLGE-------------RTADFAAAAAE-AGVVVRP---F-AGEGV 328 (352)
T ss_pred HHHHHHHHHHHHHHHHHC-CCccC-CCCCCEEEEeCCC-------------CHHHHHHHHHH-CCEEEEc---c-CCCcE
Confidence 555566677888999886 77654 4567889998853 57789998875 5999987 3 24579
Q ss_pred EEEeecCHHHHHHHHHHHHHHHh
Q 018665 322 RISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~~~ 344 (352)
||+++. .++.++++++|++++.
T Consensus 329 Ri~~~~-~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 329 RVTIGA-PEENDAFLRAARAWRA 350 (352)
T ss_pred EEeeCC-HHHHHHHHHHHHHHhc
Confidence 999865 5888999999988764
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=261.67 Aligned_cols=329 Identities=21% Similarity=0.265 Sum_probs=265.1
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH--hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK--ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~--~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
-|++..|.+++. .-+.++.+ .+......-+|++|+|.|.++..+++++++.||.|++..++|.+.....+..
T Consensus 95 QYg~s~G~peLl------~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~ 168 (472)
T KOG0634|consen 95 QYGQSSGIPELL------LFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEAL 168 (472)
T ss_pred ccccccCcHHHH------HHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhcccc
Confidence 489999999999 88888665 2333334459999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccC---------CeeEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecc
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTE---------KSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~---------~~~~i~i-~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~ 150 (352)
|+.++.|+++.+ ++++|.|++.+.. ++++++. .+-+||||..++.++.++|.++|++| |++||+||
T Consensus 169 gv~~ipv~md~~---Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKy-DfLIVeDd 244 (472)
T KOG0634|consen 169 GVKIIPVKMDQD---GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKY-DFLIVEDD 244 (472)
T ss_pred CceEEeccccCC---CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHc-CEEEEecC
Confidence 999999998643 3799999988742 3555553 44489999999999999999999999 99999999
Q ss_pred cccccccCC---C-----C-----------ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhc
Q 018665 151 IYEHIIYAP---A-----T-----------HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 211 (352)
Q Consensus 151 ~~~~~~~~~---~-----~-----------~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~ 211 (352)
.|..+-+.. . . .+++.+++. .+|+|-+.||||.++ ||+|+||+.+++.+++++-+....
T Consensus 245 pYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDt-dGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~ 322 (472)
T KOG0634|consen 245 PYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDT-DGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEV 322 (472)
T ss_pred ccceeeccccCCCccccCccccHHHHHHhhcCCcccccc-cccEEeccchhhhhc-CcceeEEeecCHHHHHHHhhhcce
Confidence 999876652 1 0 233444444 589999999999998 999999999999999999888888
Q ss_pred cccCCChHHHHHHHHHhcccCC--ChHHHHHHHHHHHHHHHHHHHHhccc-CC--ceecCCCCceEEEeecCCccCCcc-
Q 018665 212 FTSGASSISQKAGVAALGLGYA--GGEVVSKMVKAFRERRDFLVKSFGEL-EG--VKMSEPQGAFYLFIDFSTYYGSEA- 285 (352)
Q Consensus 212 ~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~-~g--~~~~~~~~g~~~~~~~~~~~~~~~- 285 (352)
.+.++|.+.|..+.+++..... ..+|+.+++..|..|+..+...|.+. |. .++.+|.+|+|+|++++- ..+..
T Consensus 323 ~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~-~~~~~~ 401 (472)
T KOG0634|consen 323 ATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPY-INFDTK 401 (472)
T ss_pred eecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecc-cccccc
Confidence 8888999999999998886221 02778899999999999999999874 44 577799999999999971 11100
Q ss_pred cCCCCCCChHHHHHHHHHccCEEeccCCCCCC------CC-eEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 286 EGFGKIENSESLCRYLLDKAQVALVPGDAFGD------DT-CIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~------~~-~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
+.. ...+++....+.++||.+.+|+.|.. .. ++|++++. +.|+++++++++..++++.-
T Consensus 402 ~~i---~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~f 468 (472)
T KOG0634|consen 402 KSI---NQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEHF 468 (472)
T ss_pred cch---HHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHHh
Confidence 000 02445555556667999999998852 23 89999999 77999999999999988753
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=268.40 Aligned_cols=316 Identities=35% Similarity=0.601 Sum_probs=263.1
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|.++.+..+++ +.++++++ .++.+...+++++++|+++++..++.++.++|++|+++.++|.++..+++..|
T Consensus 31 ~~~~~~~~~~l~------~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~ 104 (350)
T cd00609 31 GYYPDPGLPELR------EAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAG 104 (350)
T ss_pred CCCCCCCcHHHH------HHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCC
Confidence 578899999999 99999999 77766668899999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++.+.......+.+.++...+++++++++++++||+|..+|.+++++|+++|+++ |+++|+|++++++.+.+..
T Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~-~~~~ivD~a~~~~~~~~~~ 183 (350)
T cd00609 105 AEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKH-GILIISDEAYAELVYDGEP 183 (350)
T ss_pred CEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhC-CeEEEEecchhhceeCCcc
Confidence 999999987554432333667777778999999999999999999999999999999999 9999999999987765543
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcCh-hHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
...+. .....+.++++.|++|.++.+|.++|++++++ ++++.+.......+.+++...+.++..+++.. .++.++
T Consensus 184 ~~~~~-~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~ 259 (350)
T cd00609 184 PPALA-LLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDG---EEHLEE 259 (350)
T ss_pred ccccc-CcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCc---HHHHHH
Confidence 32112 22335678999999999988899999999999 79999888777666789999999999999862 267888
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC--CC
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DD 318 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~--~~ 318 (352)
..+.++++++++.+.|++.+...+..+..|+++|+.++... +...+.+ +++++||.+.++..+. .+
T Consensus 260 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~-~l~~~gi~i~~~~~~~~~~~ 327 (350)
T cd00609 260 LRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGD-----------DEEFLER-LLLEAGVVVRPGSAFGEGGE 327 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCC-----------hHHHHHH-HHHhCCEEEecccccccCCC
Confidence 89999999999999999885544356778899999887541 3444544 4545699999988776 67
Q ss_pred CeEEEEeecCHHHHHHHHHHHHH
Q 018665 319 TCIRISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~ 341 (352)
.++|++++...+|+++++++|++
T Consensus 328 ~~iRi~~~~~~~~i~~~~~al~~ 350 (350)
T cd00609 328 GFVRLSFATPEEELEEALERLAE 350 (350)
T ss_pred CeEEEEeeCCHHHHHHHHHHhhC
Confidence 89999999988999999998863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=270.45 Aligned_cols=281 Identities=21% Similarity=0.337 Sum_probs=225.4
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEE
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~ 85 (352)
++.+..++| +++++++++.+ +++++|++|+|+++++..++.++ ++|++++|+|..+...++..|.+++
T Consensus 54 ~~~~~~~Lr------~aia~~~~~~~--~~~~~i~it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~ 121 (335)
T PRK14808 54 YDSPDEELI------EKILSYLDTDF--LSKNNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFL 121 (335)
T ss_pred CCCChHHHH------HHHHHHhCCCC--CCcceEEEcCCHHHHHHHHHHHh----CcEEECCCCHHHHHHHHHHcCCeEE
Confidence 455899999 99999998444 57899999999999999999887 5799999999999999999999999
Q ss_pred EecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 86 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
.++++.+ +.++... + ..++++++++||||||.+++.+++++|+ ++ +++||+||+|.++. +....+.
T Consensus 122 ~v~~~~~--~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~~~l~~l~----~~-~~~ii~DE~Y~~f~--~~~~~~~ 187 (335)
T PRK14808 122 EVPLTKD--LRIPEVN----V-GEGDVVFIPNPNNPTGHVFEREEIERIL----KT-GAFVALDEAYYEFH--GESYVDL 187 (335)
T ss_pred EecCCCc--CCCChhH----c-cCCCEEEEeCCCCCCCCCcCHHHHHHHH----hc-CCEEEEECchhhhc--CCchHHH
Confidence 9998643 3344322 2 2568899999999999999977776665 57 99999999999863 2211121
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 245 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (352)
....+++++++|+||.+|++|+|+||+++++++++.+.+.... ++.+.+.+.++.++++. .++..+..+.+
T Consensus 188 ---~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~~--~~~~~~~q~a~~~~l~~----~~~~~~~~~~~ 258 (335)
T PRK14808 188 ---LKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRLP--FNVSYVSQMFAKVALDH----REIFEERTKFI 258 (335)
T ss_pred ---HHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhcCC--CCCCHHHHHHHHHHHhC----HHHHHHHHHHH
Confidence 1224689999999999999999999999999999998776533 55788999998888874 45677777888
Q ss_pred HHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEe
Q 018665 246 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 325 (352)
Q Consensus 246 ~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~ 325 (352)
.++++.+.+.|++. |+++..+ .|.|+|+.++.. +..++.+.|.++ ||.+.. | ..++||++
T Consensus 259 ~~~r~~l~~~L~~~-g~~~~~~-~g~f~~~~l~~~------------~~~~~~~~l~~~-Gi~V~~---~--~~~~Risi 318 (335)
T PRK14808 259 VEERERMKSALREM-GYRITDS-RGNFVFIFMEKE------------EKERLLEHLRAK-NIAVRS---F--REGVRITI 318 (335)
T ss_pred HHHHHHHHHHHHHC-CCEECCC-CCeEEEEeCCCc------------cHHHHHHHHHHC-CeEEEE---C--CCCeEEec
Confidence 88889999999987 7887766 456689998743 567888888865 999984 2 47899998
Q ss_pred ecCHHHHHHHHHHHHHH
Q 018665 326 AASLTTLQAAVERIKKG 342 (352)
Q Consensus 326 ~~~~~~l~~~~~~l~~~ 342 (352)
+.+ ++.+++++.|+++
T Consensus 319 ~~~-~~~~~~~~~l~~~ 334 (335)
T PRK14808 319 GKR-EENDMILKELEVF 334 (335)
T ss_pred CCH-HHHHHHHHHHHhh
Confidence 874 7778888887653
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=270.77 Aligned_cols=286 Identities=21% Similarity=0.338 Sum_probs=228.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.| ++.|..++| ++++++++ +++++|++|+|+++++..++..+ +||+|+++.|+|..+...++..|.
T Consensus 51 ~Y-~~~g~~~lr------~~ia~~~~-----~~~~~I~~t~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~~~~~~~g~ 116 (337)
T PRK03967 51 RY-PHITSDPLR------EAIAEFYG-----LDAENIAVGNGSDELISYLVKLF--EGKHIVITPPTFGMYSFYAKLNGI 116 (337)
T ss_pred cC-CCCCHHHHH------HHHHHHhC-----cCcceEEEcCCHHHHHHHHHHHh--CCCeEEEeCCChHHHHHHHHHcCC
Confidence 46 467899999 99999997 78899999999999999888776 689999999999999888999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++ .++.+|++.+++.+ ++++++++++||||||.+++.+ +|.+++ ++ ++++|+||+|.++.. .
T Consensus 117 ~~~~v~~~--~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~---~l~~i~-~~-~~~ii~De~y~~~~~--~-- 184 (337)
T PRK03967 117 PVIDVPLK--EDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEE---EILKVL-ET-GKPVVLDEAYAEFSG--K-- 184 (337)
T ss_pred eEEEeecC--CCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHH---HHHHHH-hc-CCEEEEECchhhhcc--c--
Confidence 99999986 34678999998865 4778889999999999999955 455555 57 999999999998642 1
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
+........+++++++|+||.+|++|+|+||+++++++++.+.+.... ++.+.+.|.++..+++. .++..+.+
T Consensus 185 -~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~~--~~~~~~~q~~~~~~l~~----~~~~~~~~ 257 (337)
T PRK03967 185 -SLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKPP--FSLNILTMKIVRLALDH----YDLIEERI 257 (337)
T ss_pred -chHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhC----HHHHHHHH
Confidence 111111224689999999999999999999999999999998877654 45789999999999975 55666666
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEE
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 322 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iR 322 (352)
+.+.++++.+.+.|.+. ..+.+++|+|++++ +.+.|.++ ||.+.++.. ..++++|
T Consensus 258 ~~~~~~r~~l~~~L~~~-----~~~~~~~~~~~~~~------------------~~~~l~~~-gi~v~~~~~-~~~~~~R 312 (337)
T PRK03967 258 DYIIKERERVRRELGEY-----AYPSDANFLLLKLD------------------AYDYLLEN-GIVVRKLSG-RLEGHIR 312 (337)
T ss_pred HHHHHHHHHHHHHhccC-----cCCCCCcEEEEhHH------------------HHHHHHHC-CEEEEeCCC-CCCCeEE
Confidence 77777788888888764 23678888997642 55777765 999987643 3467999
Q ss_pred EEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 323 ISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 323 i~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
|+++. .++.+++++.|+++.+.++
T Consensus 313 i~~~~-~~~~~~l~~~l~~~~~~~~ 336 (337)
T PRK03967 313 VTVGK-REENDEFIKALKEIKEGYG 336 (337)
T ss_pred EecCC-HHHHHHHHHHHHHHHHhcC
Confidence 99887 3566777888877776654
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=244.42 Aligned_cols=322 Identities=18% Similarity=0.311 Sum_probs=256.6
Q ss_pred CCccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCC---C--CEEEec-CCCCCCh
Q 018665 1 MQFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSP---G--DEVIIP-APFWVSY 73 (352)
Q Consensus 1 ~~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~---~--~~vl~~-~~~~~~~ 73 (352)
|++|+.+.|...+. +++++.+. ++||.+.+.+|.+|+|++++...++..+..+ | .+|++| .|.|.+|
T Consensus 67 ~cnY~~pQG~~~li------~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY 140 (417)
T COG3977 67 LCNYDGPQGKAVLI------DALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGY 140 (417)
T ss_pred HhcCCCCcchhHHH------HHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccc
Confidence 57899999999999 99999999 9999999999999999999999999887532 2 467777 7999999
Q ss_pred HHHHHhcCCeEEEec---ccCC--CCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEe
Q 018665 74 PEMARIADATPVILP---TRIS--ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 148 (352)
Q Consensus 74 ~~~~~~~g~~v~~i~---~~~~--~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~liv 148 (352)
.++.-.-..-|..-| +.++ -.+.+|.++|. +.+++.+|+++-|.||||.++.++++.+|.++|++| |+++|+
T Consensus 141 ~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~-giPliI 217 (417)
T COG3977 141 ADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQH-GIPLII 217 (417)
T ss_pred cccccCccceeeccCCcccccccceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhc-CCcEEE
Confidence 866543332222211 1112 23557888775 357889999999999999999999999999999999 999999
Q ss_pred cccccccccCCCCccccccCC-CCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHH
Q 018665 149 DEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 227 (352)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
|.+|+. +.....+.... ...+|.+.+.|+||. |+||.|+|.++++++++..+..+....+..++.++++.++.+
T Consensus 218 DnAYg~----PFP~iifsd~~~~w~~NiilC~SLSK~-GLPG~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~m 292 (417)
T COG3977 218 DNAYGV----PFPGIIFSDATPLWNENIILCMSLSKL-GLPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEM 292 (417)
T ss_pred ecccCC----CCCceecccccccCCCCEEEEeehhhc-CCCCcceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHH
Confidence 999974 11112222221 124789999999998 899999999999999999999998888899999999999999
Q ss_pred hcccCCChHHHHHH-HHHHHHHHHHHHHHhccc-C--CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 228 LGLGYAGGEVVSKM-VKAFRERRDFLVKSFGEL-E--GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 228 l~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~-~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
++.+.+ ....+++ +-.++.+.+...+.|++. | .+.+..|++..|+|+.+.+.+- ++.++.++|.+
T Consensus 293 ie~gdl-~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPI----------tt~~LYq~LKa 361 (417)
T COG3977 293 IESGDL-LRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPI----------TTEELYQRLKA 361 (417)
T ss_pred hhcchH-HHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCC----------CHHHHHHHHHh
Confidence 998654 2333333 345677776666666653 2 4667789999999999877642 78999999998
Q ss_pred ccCEEeccCCCCCC---------CCeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 304 KAQVALVPGDAFGD---------DTCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 304 ~~gi~i~~g~~~~~---------~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+ |+.+.||..|.. .+|+|++...+++++++++.+|.+.+++.-.
T Consensus 362 ~-Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~ve~~yq 414 (417)
T COG3977 362 R-GVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAEEVERAYQ 414 (417)
T ss_pred C-eEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 7 999999987753 3699999999999999999999999887543
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=258.84 Aligned_cols=267 Identities=19% Similarity=0.342 Sum_probs=203.3
Q ss_pred ChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecc
Q 018665 10 TLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~ 89 (352)
...+| +.++++++ ++|++|+|+++++..++..+ .+||+|++++|+|..+...++..|.+++.++
T Consensus 42 ~~~l~------~~ia~~~~--------~~I~vt~G~~~al~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~- 105 (311)
T PRK08354 42 YEWLE------EEFSKLFG--------EPIVITAGITEALYLIGILA-LRDRKVIIPRHTYGEYERVARFFAARIIKGP- 105 (311)
T ss_pred hHHHH------HHHHHHHC--------CCEEECCCHHHHHHHHHHhh-CCCCeEEEeCCCcHHHHHHHHHcCCEEeecC-
Confidence 46677 88888874 47999999999999877544 4899999999999999999999999997653
Q ss_pred cCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCC
Q 018665 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 169 (352)
Q Consensus 90 ~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~ 169 (352)
+|++.+++.++ +++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.++.+++. + .
T Consensus 106 -------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~-~~~li~De~y~~f~~~~~---~---~- 169 (311)
T PRK08354 106 -------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDR-NALLILDEAFIDFVKKPE---S---P- 169 (311)
T ss_pred -------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhc-CcEEEEeCcchhcccccc---c---c-
Confidence 47888888876 567899999999999999999999999999999 999999999999877542 1 1
Q ss_pred CCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Q 018665 170 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 249 (352)
Q Consensus 170 ~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (352)
.++++++++||||.+|++|+|+||+++ +.+.++..... +..+...+.++..+++. ..+++.+.++.+++.+
T Consensus 170 -~~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 240 (311)
T PRK08354 170 -EGENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVRMP--WSIGSTGYAFLEFLIED---DFEHLRKTMPLIWREK 240 (311)
T ss_pred -CCCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcCCC--ccCCHHHHHHHHHHHHh---HHHHHHHHHHHHHHHH
Confidence 157899999999999999999999998 55566555433 34566666666666653 1234444444444444
Q ss_pred HHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeecCH
Q 018665 250 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASL 329 (352)
Q Consensus 250 ~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~~~ 329 (352)
+.+.+.+ ...+.+++++ ++++ ++.++++.|.++ ||.+.||..|+.++++||+++.+
T Consensus 241 ~~l~~~l-------~~~~~~~~~~-~~~~--------------~~~~~~~~l~~~-gv~v~~g~~f~~~~~iRi~~~~~- 296 (311)
T PRK08354 241 ERFEKAL-------YVKSDANFFI-KDVG--------------DAEKFVEFLKRN-GILVRDCTSFGLPGYIRFSVRDR- 296 (311)
T ss_pred HHHHHhc-------CCCCCCcEEE-EECC--------------CHHHHHHHHHHC-CeEEEecccCCCCCeEEEEeCCH-
Confidence 4444333 2245555544 5543 567888888765 99999999998789999999984
Q ss_pred HHHHHHHHHHHH
Q 018665 330 TTLQAAVERIKK 341 (352)
Q Consensus 330 ~~l~~~~~~l~~ 341 (352)
++.+++++.|++
T Consensus 297 ~~~~~l~~al~~ 308 (311)
T PRK08354 297 EENEKLIRALRE 308 (311)
T ss_pred HHHHHHHHHHHH
Confidence 344555555554
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=254.47 Aligned_cols=290 Identities=20% Similarity=0.228 Sum_probs=227.3
Q ss_pred HHHHHHHHhcCCCC-CCCcEEEeCChHHHHHHHHHHh----cCCCCEEEecCCCCCC----hHHHHHhcCCeEEEecccC
Q 018665 21 QQFVINLKENGLSY-TPDQILVSNGAKQSILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRI 91 (352)
Q Consensus 21 ~~ia~~~~~~~~~~-~~~~i~~~~g~~~a~~~~~~~l----~~~~~~vl~~~~~~~~----~~~~~~~~g~~v~~i~~~~ 91 (352)
+.++++++ . ++++|++++|+|++++.++.++ .++||+|+++++.|++ +...++..|.+++.++++.
T Consensus 70 ~~la~~~g-----~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~ 144 (401)
T PRK10874 70 EQVAQLLN-----APDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA 144 (401)
T ss_pred HHHHHHcC-----CCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC
Confidence 88888886 5 6789999999999999999987 3688999999999876 4456678899999999863
Q ss_pred CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
++.+|++++++.++++++++++++|+||||.++| +++|.++|+++ |+++|+|++|+... .+..+..
T Consensus 145 --~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~-g~~~ivD~a~~~g~----~~~~~~~---- 210 (401)
T PRK10874 145 --DRLPDVDLLPELITPRTRILALGQMSNVTGGCPD---LARAITLAHQA-GMVVMVDGAQGAVH----FPADVQA---- 210 (401)
T ss_pred --CCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCC---HHHHHHHHHHc-CCEEEEECCccccc----ccCCchh----
Confidence 4568999999999999999999999999999999 89999999999 99999999986421 1222221
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHHHHHhhh---------------------hccccCCChHHHHHHHHHhcc
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~ 230 (352)
.+.++++.|++|.+|.+| +|+++.++++++.+.... ....++++...+.++.++++.
T Consensus 211 ~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~ 288 (401)
T PRK10874 211 LDIDFYAFSGHKLYGPTG--IGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEW 288 (401)
T ss_pred cCCCEEEEecccccCCCc--cEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHH
Confidence 234588899999887555 699999998887654221 111235666677777777754
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 310 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~ 310 (352)
. .+....+..++.++.++++.+.|++++|+.+..+..+.++++.+++. +..++.+.|.+ .||.+.
T Consensus 289 l--~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~------------~~~~~~~~L~~-~gI~v~ 353 (401)
T PRK10874 289 L--ADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV------------HHSDLVTLLAE-YGIALR 353 (401)
T ss_pred H--HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc------------CHHHHHHHHHH-CCcEEe
Confidence 1 12334556778888899999999988898877655555566676643 67888888876 499999
Q ss_pred cCCCCC--------CCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 311 PGDAFG--------DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 311 ~g~~~~--------~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+|..|. ..+++|+|++. +++|++++++.|+++++.+
T Consensus 354 ~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 354 AGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred ccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 987653 35899999997 8999999999999988754
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=251.73 Aligned_cols=290 Identities=21% Similarity=0.222 Sum_probs=226.4
Q ss_pred HHHHHHHHhcCCCC-CCCcEEEeCChHHHHHHHHHHh----cCCCCEEEecCCCCCC----hHHHHHhcCCeEEEecccC
Q 018665 21 QQFVINLKENGLSY-TPDQILVSNGAKQSILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRI 91 (352)
Q Consensus 21 ~~ia~~~~~~~~~~-~~~~i~~~~g~~~a~~~~~~~l----~~~~~~vl~~~~~~~~----~~~~~~~~g~~v~~i~~~~ 91 (352)
+.++++++ . ++++|++|+|+|++++.++.++ +++||+|+++++.|++ +...++..|.+++.++++.
T Consensus 67 ~~la~~~g-----~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~ 141 (398)
T TIGR03392 67 QQVARFLN-----APDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA 141 (398)
T ss_pred HHHHHHhC-----CCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC
Confidence 88999887 5 3689999999999999999887 4788999999999976 4456788999999999863
Q ss_pred CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
++.+|+++++++++++++++++++|+||||..+| +++|.++|+++ |+++++|++|+... .+..+..
T Consensus 142 --~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~---~~~i~~~~~~~-~~~~ivD~a~~~~~----~~~~~~~---- 207 (398)
T TIGR03392 142 --DLLPDIRQLPELLTPRTRILALGQMSNVTGGCPD---LARAITLAHQY-GAVVVVDGAQGVVH----GPPDVQA---- 207 (398)
T ss_pred --CCCcCHHHHHHHhccCceEEEEECccccccccCC---HHHHHHHHHHc-CCEEEEEhhhhcCC----CCCChhh----
Confidence 3458999999999989999999999999999999 88999999999 99999999997522 1222221
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHHHHHhhh---------------------hccccCCChHHHHHHHHHhcc
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~ 230 (352)
.+.++++.|.+|.+|.+| +|+++.++++++.+.... ....++++.....++.++++.
T Consensus 208 ~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~ 285 (398)
T TIGR03392 208 LDIDFYAFSGHKLYGPTG--IGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEW 285 (398)
T ss_pred cCCCEEEEecccccCCCc--eEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHH
Confidence 234588899999887444 899999998887764221 111235666677777777754
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 310 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~ 310 (352)
- .....+++.++.++.++++.+.|++++++.+..+..+.++++.+++. ++.++.+.|.++ ||.+.
T Consensus 286 l--~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~------------~~~~l~~~L~~~-gI~v~ 350 (398)
T TIGR03392 286 L--TDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV------------HHSDLAALLAES-GIALR 350 (398)
T ss_pred H--HHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc------------CHHHHHHHHHhC-CEEEe
Confidence 1 12335567788888999999999988888877544555566666643 678898888764 99999
Q ss_pred cCCCCC--------CCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 311 PGDAFG--------DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 311 ~g~~~~--------~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+|..|. .++++|+|++. +++|++++++.|+++++.+
T Consensus 351 ~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 351 AGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred cCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 988663 35799999987 8899999999999988753
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=237.83 Aligned_cols=278 Identities=21% Similarity=0.233 Sum_probs=214.4
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEec---CCCCCChHHHHHhcCCeEEEecccCCCCccc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP---APFWVSYPEMARIADATPVILPTRISENFLL 97 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~---~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~ 97 (352)
+.+|++++ .+++++++++|+++++..++.++.++||.|+++ .|+|.++...++..|.++..+ .
T Consensus 61 ~~lA~~~g-----~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~---------~ 126 (346)
T TIGR03576 61 ELGREHLG-----GPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLAGAEYFES---------D 126 (346)
T ss_pred HHHHHHcC-----CCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHcCCEEecc---------C
Confidence 88888886 677999999999999999999999999999975 479999999999999876332 1
Q ss_pred CHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEE
Q 018665 98 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 177 (352)
Q Consensus 98 d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (352)
++++++. . +++++|+++ +++++|.+++.+.+++|+++|+++ |+++++||+|+.+........+.... +..++
T Consensus 127 ~l~~l~~-~-~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~-~~~livDEAy~~~~~~~~~~~~~~~~----~~div 198 (346)
T TIGR03576 127 ELSELKK-I-DGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSK-EAIVLVDDASGARVRRLYGQPPALDL----GADLV 198 (346)
T ss_pred CHHHHhh-C-cCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHc-CCEEEEECCccccccccCCCCCHHHc----CCcEE
Confidence 4555433 2 456777774 568999999999999999999999 99999999998754221111122111 23377
Q ss_pred EeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhc
Q 018665 178 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 257 (352)
Q Consensus 178 ~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 257 (352)
+.|+||. ++|+|+||+++++++++.+......+.++.+++.+.++.++|+. .. .+.+++.++++++.+.+.++
T Consensus 199 v~s~SKa--laG~r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~----~~-~~~~~~~l~~r~~~~~~~l~ 271 (346)
T TIGR03576 199 VTSTDKL--MDGPRGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEE----FE-LSRIRDAFKRKEEVYLRLFD 271 (346)
T ss_pred Eeccchh--ccccceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhh----cc-HHHHHHHHHHHHHHHHHHHH
Confidence 8899994 57899999999999999999888777777888899999999975 12 34567778888888888887
Q ss_pred ccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-CCCeEEEEeecCHH---HHH
Q 018665 258 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-DDTCIRISYAASLT---TLQ 333 (352)
Q Consensus 258 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-~~~~iRi~~~~~~~---~l~ 333 (352)
+ +.+.++..+ |+|++++.. +..+++.++++++||.+.|+..|. .++++||+++.+++ +.+
T Consensus 272 ~---~~~~~~~~~-f~~~~~~~~------------~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~ 335 (346)
T TIGR03576 272 K---LNVERTPTG-FVIKGVEEE------------KLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDD 335 (346)
T ss_pred h---CCCCcCCCe-EEEEeCCCC------------CHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHH
Confidence 4 444443444 688888642 455666777777899999998773 47899999999765 899
Q ss_pred HHHHHHHHHH
Q 018665 334 AAVERIKKGL 343 (352)
Q Consensus 334 ~~~~~l~~~~ 343 (352)
++++.|++.+
T Consensus 336 ~~~~al~~~~ 345 (346)
T TIGR03576 336 YLVEAVKDSL 345 (346)
T ss_pred HHHHHHHhcc
Confidence 9999998765
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-31 Score=237.19 Aligned_cols=290 Identities=16% Similarity=0.191 Sum_probs=223.1
Q ss_pred HHHHHHHHhcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC--hHHHHHhcCCeEEEecccCCCCccc
Q 018665 21 QQFVINLKENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFLL 97 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~--~~~~~~~~g~~v~~i~~~~~~~~~~ 97 (352)
+.++++++ .++ +.+++++|+++++..++.++.++|++|+++.++|++ +...++..|.+++.++.++ ++.+
T Consensus 39 ~~la~~~g-----~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~ 111 (356)
T cd06451 39 EGLRYVFQ-----TENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPW--GEAV 111 (356)
T ss_pred HHHHHHhc-----CCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCC--CCCC
Confidence 88888886 434 457889999999999999999999999999988876 4577888999999999864 3568
Q ss_pred CHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 98 DPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 98 d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
|++++++.+++ +++++++++++||+|...| +++|.++|+++ |+++++|++++. |..+.++.. .+..+
T Consensus 112 ~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~-~~~li~D~~~~~----g~~~~~~~~----~~~d~ 179 (356)
T cd06451 112 SPEEIAEALEQHDIKAVTLTHNETSTGVLNP---LEGIGALAKKH-DALLIVDAVSSL----GGEPFRMDE----WGVDV 179 (356)
T ss_pred CHHHHHHHHhccCCCEEEEeccCCCcccccC---HHHHHHHHHhc-CCEEEEeeehhc----cCccccccc----cCccE
Confidence 99999999986 8999999999999999999 88899999999 999999999863 222222222 23347
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHh---hhh----------------ccccCCChHHHHHHHHHhcccCCChHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNK---IQS----------------QFTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~---~~~----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
++.|.+|+++ .+.++|+++.++++++.+.. ... ....+++...+.++.++++.. ....
T Consensus 180 ~~~s~~K~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l--~~~~ 256 (356)
T cd06451 180 AYTGSQKALG-APPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLI--LEEG 256 (356)
T ss_pred EEecCchhcc-CCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHH--HHhh
Confidence 7889999997 44578999999998887753 000 122345555556666666541 1345
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCceecCCC---CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC
Q 018665 238 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~ 314 (352)
++++.++.+++++++.+.|++. |+++..+. .+.++++.+++.. +..++++.|.+++||.+.+|..
T Consensus 257 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~~gI~~~~g~~ 324 (356)
T cd06451 257 LENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEGV-----------DGDEVVRRLMKRYNIEIAGGLG 324 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCCC-----------CHHHHHHHHHHhCCEEEecccc
Confidence 6777888899999999999987 87776432 3445567766432 6789999998776999999876
Q ss_pred CCCCCeEEEEeec--CHHHHHHHHHHHHHHHh
Q 018665 315 FGDDTCIRISYAA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 315 ~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~ 344 (352)
+..++++|++++. +++|++++++.|+++++
T Consensus 325 ~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 325 PTAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred cccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 5556799999986 88999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=245.41 Aligned_cols=317 Identities=21% Similarity=0.265 Sum_probs=234.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
+|++..++.+++ +++|++++ .++.|++++|.+ ++..++.++++++|.|++....|.++...++..+.
T Consensus 149 ~yg~~~~~~~Le------e~La~~~~------~~~~i~~s~G~~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~ 215 (481)
T PLN02822 149 FYGTIDVHLDCE------TKIAKFLG------TPDSILYSYGLS-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRS 215 (481)
T ss_pred cccCHHHHHHHH------HHHHHHhC------CCCEEEECCHHH-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCC
Confidence 567777788999 99999996 567888888776 57889999999999999998888888888888999
Q ss_pred eEEEecccCCCCcccCHHHHHhhc--cCCe-eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 83 TPVILPTRISENFLLDPKVLESKL--TEKS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l--~~~~-~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
+++.++.++.+++..+++++++.. ++++ ++|+++.+++++|.+.| +++|.++|++| |+++|+||+|+...++.
T Consensus 216 ~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~-~~~LIvDEa~s~gvlG~ 291 (481)
T PLN02822 216 TIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP---LDEIVRLKEKY-RFRVLLDESNSFGVLGK 291 (481)
T ss_pred eEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHc-CCEEEEECCccccccCC
Confidence 999998653333333333333322 1234 68888888999999999 99999999999 99999999999655542
Q ss_pred CCcc--ccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCC--hHHHHHHHHHhcccCCCh
Q 018665 160 ATHT--SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS--SISQKAGVAALGLGYAGG 235 (352)
Q Consensus 160 ~~~~--~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 235 (352)
.... ....+.. .+.+++++|+||.+|+.| ||+++++++++.++.....++++.+ ++.+.++.++++. .
T Consensus 292 ~G~G~~e~~~v~~-~~~dii~~s~sKalg~~G---G~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~----l 363 (481)
T PLN02822 292 SGRGLSEHFGVPI-EKIDIITAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV----L 363 (481)
T ss_pred CCCChHHHcCCCC-CCCeEEEecchhhhhhCC---eEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHH----H
Confidence 2111 1111111 245689999999998777 9999999999988755544455444 6677777788864 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC-
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA- 314 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~- 314 (352)
+...+++++++++++++.+.|++.+|+.+..+..++++++.+++..+..... .....+++++|++++||.+.++..
T Consensus 364 ~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~---~~~~~~~~~~Ll~e~GV~v~~~~~~ 440 (481)
T PLN02822 364 EDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKED---LSLLEHIADRMLKEDSVLVVVSKRS 440 (481)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCcccccch---HHHHHHHHHHHHhcCCEEEEeeCCC
Confidence 2235778899999999999999877888877788888888886421100000 001367899998666999997632
Q ss_pred -CC---CCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 315 -FG---DDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 315 -~~---~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
+. .+.++|++++. +++||++++++|++++.++.
T Consensus 441 ~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~ 479 (481)
T PLN02822 441 TLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVL 479 (481)
T ss_pred CcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHh
Confidence 22 14579998774 99999999999999988754
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=240.26 Aligned_cols=290 Identities=19% Similarity=0.222 Sum_probs=222.5
Q ss_pred HHHHHHHHhcCCCCC-CCcEEEeCChHHHHHHHHHHh----cCCCCEEEecCCCCCChH----HHHHhcCCeEEEecccC
Q 018665 21 QQFVINLKENGLSYT-PDQILVSNGAKQSILQAVLAV----CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRI 91 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l----~~~~~~vl~~~~~~~~~~----~~~~~~g~~v~~i~~~~ 91 (352)
+.++++++ .+ +++|++++|+++++..++.++ .++|++|+++++.|.+.. ..++..|.+++.++++
T Consensus 69 ~~ia~~~~-----~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~- 142 (403)
T TIGR01979 69 EKVAKFIN-----AASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD- 142 (403)
T ss_pred HHHHHHhC-----cCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC-
Confidence 88888886 44 579999999999999888875 578999999999887644 4566789999999987
Q ss_pred CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
.++.+|++++++.++++++++++++++||||..+| +++|.++|+++ |+++++|++++.. ..+..+..
T Consensus 143 -~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~-~~~~ivD~a~~~g----~~~~~~~~---- 209 (403)
T TIGR01979 143 -DDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNP---VEEIAKLAHQV-GAKVLVDGAQAVP----HMPVDVQA---- 209 (403)
T ss_pred -CCCCCCHHHHHHHhccCCeEEEEEcccccccccCC---HHHHHHHHHHc-CCEEEEEchhhcC----ccccCccc----
Confidence 34558999999999999999999999999999999 89999999999 9999999998752 22222221
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHHHHHhhh---------------------hccccCCChHHHHHHHHHhcc
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~ 230 (352)
.+.++++.|++|.+|.+| +|++++++++++.+.... .....+++.....++.++++.
T Consensus 210 ~~~d~~~~s~~K~~gp~G--~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~ 287 (403)
T TIGR01979 210 LDCDFYVFSGHKMYGPTG--IGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDY 287 (403)
T ss_pred cCCCEEEEecccccCCCC--ceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHH
Confidence 245699999999887444 899999988777653211 111234566666677776654
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccC
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 306 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 306 (352)
. .....+.+.++..++++.+.+.|+++++++++.+. .+.++.+.+++. +..++.+.|.++ |
T Consensus 288 ~--~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~~~L~~~-g 352 (403)
T TIGR01979 288 L--EAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGV------------HPHDVGTILDEE-G 352 (403)
T ss_pred H--HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCc------------CHHHHHHHHhhC-C
Confidence 1 12235677888899999999999988888887653 134455666643 567888777754 9
Q ss_pred EEeccCCCC--------CCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 307 VALVPGDAF--------GDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 307 i~i~~g~~~--------~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
|.+.+|..+ +.++++|+|++. +++|++++++.|+++++.+
T Consensus 353 I~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 353 IAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred EEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 999887633 346799999997 8899999999999988765
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=239.71 Aligned_cols=317 Identities=15% Similarity=0.136 Sum_probs=236.2
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
+.|++..|..++| ++++++++ .+++++|+|+++|+..++.+++++|| |++++|.|..+...++..|
T Consensus 72 ~~Y~~~~g~~~Lr------eaia~~~~-------~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G 137 (460)
T PRK13238 72 EAYAGSRSYYRLE------DAVKDIFG-------YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNG 137 (460)
T ss_pred cccCCCCCHHHHH------HHHHHHhC-------CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHcC
Confidence 4699999999999 99999985 56899999999999999999999999 9999999999999999999
Q ss_pred CeEEEecccCC------CCcc--cCHHHHHhhcc----CCeeEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEe
Q 018665 82 ATPVILPTRIS------ENFL--LDPKVLESKLT----EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLS 148 (352)
Q Consensus 82 ~~v~~i~~~~~------~~~~--~d~~~l~~~l~----~~~~~i~i~~p~nptG-~~~~~~~l~~l~~~~~~~~~~~liv 148 (352)
.+++.+++++. +++. +|+++|++.++ +++++|++++|+||+| ++++.+++++|.++|+++ |+++|+
T Consensus 138 ~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~-gi~li~ 216 (460)
T PRK13238 138 ATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKY-GIPVVI 216 (460)
T ss_pred CEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEE
Confidence 99999998642 2444 99999999997 3689999999999997 999999999999999999 999999
Q ss_pred cccccc--cccC-----CCCccccccCCC--CCCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhh----hcccc
Q 018665 149 DEIYEH--IIYA-----PATHTSFASLPG--MWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQ----SQFTS 214 (352)
Q Consensus 149 D~~~~~--~~~~-----~~~~~~~~~~~~--~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~----~~~~~ 214 (352)
|+++.. ..+. +....++..+.. ...-..+..|..|... .+. .|+++++ ++++++++... ...++
T Consensus 217 Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~-~~~-GG~i~~~d~~l~~~~~~~~~~~~g~~t~ 294 (460)
T PRK13238 217 DAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAM-VNI-GGLLCFRDEDLFTECRTLCILYEGFPTY 294 (460)
T ss_pred ECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCC-Ccc-eeEEEcChHHHHHHhhhcccccCCcccc
Confidence 997742 2221 112233322100 0011245555666542 222 3677777 57888877653 22233
Q ss_pred CC-ChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCC-cccCCCCCC
Q 018665 215 GA-SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGKIE 292 (352)
Q Consensus 215 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 292 (352)
+. +...+.+++.++.... ..++++.. .+++++|.+.|++. |+.+..|.+|+++++++.+.... ...++
T Consensus 295 ~g~~~~~~~Ala~~l~e~~-~~~~~~~~----~~~~~~l~~~L~~~-G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~---- 364 (460)
T PRK13238 295 GGLAGRDMEALAVGLYEGM-DEDYLAYR----IGQVEYLGEGLEEA-GVPIQTPAGGHAVFVDAGKFLPHIPAEQF---- 364 (460)
T ss_pred cCcHHHHHHHHHhhHHHhh-ChHHHHHH----HHHHHHHHHHHHHC-CCCeEccCCceEEEEEchhcCCCCCCCCC----
Confidence 33 5555777777665311 13333333 33568899999887 99999999999999998653211 11111
Q ss_pred ChHHHHHHHHHccCEEeccCCCCCC-------------CCeEEEEeec---CHHHHHHHHHHHHHHHhh
Q 018665 293 NSESLCRYLLDKAQVALVPGDAFGD-------------DTCIRISYAA---SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 293 ~~~~~~~~l~~~~gi~i~~g~~~~~-------------~~~iRi~~~~---~~~~l~~~~~~l~~~~~~ 345 (352)
.+.+++.+|+++.||.+.|++.|.. ...+|++++. +.+.++.+.++|++..+.
T Consensus 365 ~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 365 PAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred chHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999886642 2589999998 999999999999988743
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-31 Score=242.07 Aligned_cols=292 Identities=17% Similarity=0.195 Sum_probs=225.5
Q ss_pred HHHHHHHHhcCCCCC-CCcEEEeCChHHHHHHHHHHh----cCCCCEEEecCCCCCCh----HHHHHhcCCeEEEecccC
Q 018665 21 QQFVINLKENGLSYT-PDQILVSNGAKQSILQAVLAV----CSPGDEVIIPAPFWVSY----PEMARIADATPVILPTRI 91 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l----~~~~~~vl~~~~~~~~~----~~~~~~~g~~v~~i~~~~ 91 (352)
+.++++++ .. +++|++++|+|++++.++.++ +++|++|+++.+.|++. ...++..|.+++.++++.
T Consensus 83 ~~la~~~~-----~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~ 157 (424)
T PLN02855 83 KKVAAFIN-----ASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTP 157 (424)
T ss_pred HHHHHHcC-----CCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 88999887 43 479999999999999988763 57899999999988754 455677899999999864
Q ss_pred CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
+ ..+|++++++.+++++++|++++++||||..+| +++|+++|+++ |+++++|++|+. +..+..+..
T Consensus 158 ~--~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~---~~~I~~l~~~~-g~~vivD~a~~~----g~~~~~~~~---- 223 (424)
T PLN02855 158 D--EVLDVEQLKELLSEKTKLVATHHVSNVLGSILP---VEDIVHWAHAV-GAKVLVDACQSV----PHMPVDVQT---- 223 (424)
T ss_pred C--CCcCHHHHHHHhccCceEEEEeCccccccccCC---HHHHHHHHHHc-CCEEEEEhhhhc----CCcCCCchh----
Confidence 3 348999999999889999999999999999999 88999999999 999999999864 222222222
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHHHHHhh---------------------hhccccCCChHHHHHHHHHhcc
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI---------------------QSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
.+.++++.|++|.+|.+ ++|++++++++++.+... .+...++++.....++.++++.
T Consensus 224 ~~~d~~~~s~~K~~gp~--G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~ 301 (424)
T PLN02855 224 LGADFLVASSHKMCGPT--GIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDY 301 (424)
T ss_pred cCCCEEEeecccccCCC--ccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHH
Confidence 23458899999977633 489999998887765422 0112234566666666667654
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC------CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
. .....+++.++.++.++++.+.|+++++++++.+. .+.++.+.+++. +..++.+.|.++
T Consensus 302 ~--~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~------------~~~~v~~~L~~~ 367 (424)
T PLN02855 302 L--SEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI------------HPTDLSTFLDQQ 367 (424)
T ss_pred H--HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc------------CHHHHHHHhccc
Confidence 1 13357788888999999999999988888887532 234466677653 677899998876
Q ss_pred cCEEeccCCCCC--------CCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 305 AQVALVPGDAFG--------DDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 305 ~gi~i~~g~~~~--------~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
+||.+..|..|. .++++|+|++. +++|++++++.|+++++.++
T Consensus 368 ~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 368 HGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred CCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 699999887553 24789999997 89999999999999997754
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=238.91 Aligned_cols=288 Identities=15% Similarity=0.149 Sum_probs=223.2
Q ss_pred HHHHHHHHhcCCCC-CCCcEEEeCChHHHHHHHHHH----hcCCCCEEEecCCCCCCh----HHHHHhcCCeEEEecccC
Q 018665 21 QQFVINLKENGLSY-TPDQILVSNGAKQSILQAVLA----VCSPGDEVIIPAPFWVSY----PEMARIADATPVILPTRI 91 (352)
Q Consensus 21 ~~ia~~~~~~~~~~-~~~~i~~~~g~~~a~~~~~~~----l~~~~~~vl~~~~~~~~~----~~~~~~~g~~v~~i~~~~ 91 (352)
+.+|++++ . ++++|++|+|+|++++.++.+ ++++||+|+++++.|++. ...++..|.+++.++++.
T Consensus 74 ~~la~~~~-----~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~ 148 (406)
T PRK09295 74 KQAALFIN-----ARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP 148 (406)
T ss_pred HHHHHHcC-----cCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC
Confidence 88888886 4 468999999999999988876 457899999999888754 456678899999999863
Q ss_pred CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
++.+|+++|+++++++++++++++|+||||..+| +++|.++|+++ |+++++|++|+.. ..+..+..
T Consensus 149 --~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~---~~~i~~~~~~~-~~~vivD~a~~~g----~~~~~~~~---- 214 (406)
T PRK09295 149 --DGTLQLETLPALFDERTRLLAITHVSNVLGTENP---LAEMIALAHQH-GAKVLVDGAQAVM----HHPVDVQA---- 214 (406)
T ss_pred --CCCCCHHHHHHhcCCCcEEEEEecchhcccccCC---HHHHHHHHHHc-CCEEEEEcccccC----ccccCchh----
Confidence 4458999999999889999999999999999999 89999999999 9999999998752 22222222
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHHHHHhh----------------------hhccccCCChHHHHHHHHHhc
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI----------------------QSQFTSGASSISQKAGVAALG 229 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~ 229 (352)
.+.++++.|++|.+|.+| +|++++++++++.+... .+...++++.....++.++++
T Consensus 215 ~~~D~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~ 292 (406)
T PRK09295 215 LDCDFYVFSGHKLYGPTG--IGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALD 292 (406)
T ss_pred cCCCEEEeehhhccCCCC--cEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHH
Confidence 344589999999877444 89999998887664311 112234678888888888886
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC-CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE
Q 018665 230 LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308 (352)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 308 (352)
.. .....+++.++.+++++++.+.|++++++++..+. ...++.+.+++. ++.++.+.|. ++||.
T Consensus 293 ~~--~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~------------~~~~~~~~L~-~~gI~ 357 (406)
T PRK09295 293 YV--SALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH------------HAYDVGSFLD-NYGIA 357 (406)
T ss_pred HH--HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCc------------CHHHHHHHHH-hCCeE
Confidence 51 12245677788888999999999988888887643 223345556543 6778888776 45999
Q ss_pred eccCCCCC--------CCCeEEEEeec--CHHHHHHHHHHHHHHHh
Q 018665 309 LVPGDAFG--------DDTCIRISYAA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 309 i~~g~~~~--------~~~~iRi~~~~--~~~~l~~~~~~l~~~~~ 344 (352)
+..|..|. .++++|+|++. +++|++++++.|+++.+
T Consensus 358 v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 358 VRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred EeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 99887553 24689999998 88999999999998754
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=235.63 Aligned_cols=293 Identities=13% Similarity=0.140 Sum_probs=216.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 100 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~ 100 (352)
+.+|++++ .+.+.+++|+++++..++.+++++||.|+++.+.|.+....++..|.+++.++.+.+.++.+|++
T Consensus 58 e~lA~~~g-------~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 130 (370)
T TIGR02539 58 EDLAEFLG-------MDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPE 130 (370)
T ss_pred HHHHHHhC-------CCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHH
Confidence 88999985 34667799999999999999999999999999998887788899999999999875556779999
Q ss_pred HHHhhccC-------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 101 VLESKLTE-------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 101 ~l~~~l~~-------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
.|++.+++ ++++|++++|+||+|...| +++|.++|+++ |+++|+|++|+... .+..... .+
T Consensus 131 ~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~-~~~livDea~~~g~----~~~~~~~----~~ 198 (370)
T TIGR02539 131 GYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREK-GVPLLLNCAYTVGR----MPVSAKE----IG 198 (370)
T ss_pred HHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHc-CCeEEEECccccCC----cCCCHHH----cC
Confidence 99999852 6789999999999999999 88999999999 99999999998631 1111111 23
Q ss_pred ceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcccc--------CCChHHHHHHHHHhcccCCChHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS--------GASSISQKAGVAALGLGYAGGEVVSKMVKAF 245 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (352)
..++++|+||+++ ++.|+||+++++++++.+......+.. +.....+.++.++++. ..+.+++..+.+
T Consensus 199 ~di~v~s~sK~~~-~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~l~~~~~~~ 274 (370)
T TIGR02539 199 ADFIVGSGHKSMA-ASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH---VVERVKRWDEEV 274 (370)
T ss_pred CCEEEeeCccccc-CCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4578899999998 566899999999999988766543322 1122244455555542 134444444444
Q ss_pred HHHHHHHHHHhcccCCceec--CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE-eccCCCCCCCCeEE
Q 018665 246 RERRDFLVKSFGELEGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA-LVPGDAFGDDTCIR 322 (352)
Q Consensus 246 ~~~~~~l~~~l~~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~-i~~g~~~~~~~~iR 322 (352)
+. ++++.+.|+++ |+.++ .+..++++++++|.... ...+ ....+..+.+.|.++ ||. +.++ .++++|
T Consensus 275 ~~-~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~-~~~~--~~~~~~~~~~~L~e~-GI~~ir~~----~~~~iR 344 (370)
T TIGR02539 275 KK-TRWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHE-IAQK--HKRRGYFLYEELKKR-GIHGIRSG----QTKYFK 344 (370)
T ss_pred HH-HHHHHHHHHhC-CcEEEccCCCcCceEEEECCchhH-Hhhh--hccccHHHHHHHHhC-CCccccCC----cceEEE
Confidence 44 45899999988 77763 35667778888763200 0000 001345788888876 886 5543 357999
Q ss_pred EEeec-CHHHHHHHHHHHHHHHhhh
Q 018665 323 ISYAA-SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 323 i~~~~-~~~~l~~~~~~l~~~~~~~ 346 (352)
+++.. ++++++++++.|+++++++
T Consensus 345 is~~~~t~e~i~~l~~~L~~~~~~~ 369 (370)
T TIGR02539 345 LSVYGLTKEQVEYVVDSFEEIVEEY 369 (370)
T ss_pred EEecCCCHHHHHHHHHHHHHHHHhc
Confidence 99633 8999999999999988753
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-30 Score=230.84 Aligned_cols=294 Identities=22% Similarity=0.246 Sum_probs=239.4
Q ss_pred ChhhhccchhhHHHHHHHHhcCCCCC-CCcEEEeCChHHHHHHHHHHh---cCCCCEEEecCCCCCChH----HHHHhcC
Q 018665 10 TLQMRVLWSFVQQFVINLKENGLSYT-PDQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYP----EMARIAD 81 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l---~~~~~~vl~~~~~~~~~~----~~~~~~g 81 (352)
+++.| +.+|++++ .+ .++|++|+|+|++++.+..++ .++||+|++..-.|++.. ...++.|
T Consensus 68 ~e~aR------e~va~~~~-----a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~G 136 (405)
T COG0520 68 YEAAR------EAVARFLN-----ADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTG 136 (405)
T ss_pred HHHHH------HHHHHHhC-----CCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcC
Confidence 35677 99999997 66 489999999999999999998 688999999999988655 5556779
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.+|++ +++.++++.+++.+++++++|.+++.+|.||++.| +++|+++|+++ |+++++|.+++. ++.
T Consensus 137 a~v~~i~~~--~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~p---v~~I~~la~~~-ga~v~VDaaq~~----~h~ 206 (405)
T COG0520 137 AKVRVIPLD--DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNP---VKEIAELAHEH-GALVLVDAAQAA----GHL 206 (405)
T ss_pred cEEEEEecC--CCCCcCHHHHHHhcCCCceEEEEECccccccccch---HHHHHHHHHHc-CCEEEEECcccc----Ccc
Confidence 999999998 44568999999999999999999999999999999 99999999999 999999999986 444
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh----------------------hhccccCCChH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI----------------------QSQFTSGASSI 219 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~----------------------~~~~~~~~~~~ 219 (352)
+..+..+ +.++++.|.+|+++.| .++|++++++++++.+... ......+++..
T Consensus 207 ~idv~~l----~~Df~afsgHKwl~gP-~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~ 281 (405)
T COG0520 207 PIDVQEL----GCDFLAFSGHKWLLGP-TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIA 281 (405)
T ss_pred CCCchhc----CCCEEEEcccccccCC-CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHH
Confidence 4444443 4559999999966424 4699999999999886211 11223467777
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC---CceEEEeecCCccCCcccCCCCCCChHH
Q 018665 220 SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSES 296 (352)
Q Consensus 220 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
...++.++++.. ....++++.++.+++.+++.+.|+++|+++++.+. .+-.+.+.+++. .+.+
T Consensus 282 ~~i~l~aAl~~~--~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~------------~~~d 347 (405)
T COG0520 282 GAIGLAAALDYL--LEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI------------HPHD 347 (405)
T ss_pred HHHhHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC------------CHHH
Confidence 777777777642 24457788889999999999999999999999764 345566677664 7999
Q ss_pred HHHHHHHccCEEeccCCCCCC--------CCeEEEEeec--CHHHHHHHHHHHHHHHh
Q 018665 297 LCRYLLDKAQVALVPGDAFGD--------DTCIRISYAA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 297 ~~~~l~~~~gi~i~~g~~~~~--------~~~iRi~~~~--~~~~l~~~~~~l~~~~~ 344 (352)
++..|.++ ||.++.|..|.. +..+|+|++. ++||++++++.|+++.+
T Consensus 348 v~~~L~~~-gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 348 VATLLDEK-GIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HHHHHHhC-CeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 99998877 799999987754 3469999998 99999999999999864
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-30 Score=218.73 Aligned_cols=331 Identities=24% Similarity=0.386 Sum_probs=252.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
-|..+.|.+-+| +.+|+|+. |.|++.++++|++|.|++.++..++..++ .+.+.|++|-|.|+-|...+...
T Consensus 108 aYS~SqGv~~vR------~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~ 181 (475)
T KOG0258|consen 108 AYSDSQGVPGVR------KHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLL 181 (475)
T ss_pred ccccccCChhHH------HHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHh
Confidence 488899999999 99999999 88988999999999999999999998875 46689999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccC-----CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~-----~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
|...+.+-++++.+|.+|.++|++.+++ +++++++.||.||||++++.+.+++|+.+|.++ ++.++.||+|.+.
T Consensus 182 ~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~-~l~llaDEVYQ~N 260 (475)
T KOG0258|consen 182 GGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEE-GLVLLADEVYQDN 260 (475)
T ss_pred CCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHc-CeEEechHHHHhh
Confidence 9999999999999999999999998853 789999999999999999999999999999999 9999999999988
Q ss_pred ccCCC-CccccccC----CCCCC-c--eEEEecccccc-ccccceeEEEE---cChhHHHHHHhhhhccccCCChHHHHH
Q 018665 156 IYAPA-THTSFASL----PGMWE-R--TLTVNGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQSQFTSGASSISQKA 223 (352)
Q Consensus 156 ~~~~~-~~~~~~~~----~~~~~-~--~i~~~s~sK~~-g~~g~~~g~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (352)
.|.+. ...|+.+. ...+. + .+...|.||.+ |-.|.|.||+- .+++..+.+.+... ....++..+|..
T Consensus 261 vy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~s-i~lc~~V~GQ~~ 339 (475)
T KOG0258|consen 261 VYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLAS-IKLCPQVSGQKL 339 (475)
T ss_pred ccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHh-hhhcCCccchhh
Confidence 88653 44454442 22222 2 35577889987 66789999985 35566555554432 224566667766
Q ss_pred HHHHhcccCCCh-------HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEee--cCCccCCcccCCCCCCCh
Q 018665 224 GVAALGLGYAGG-------EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID--FSTYYGSEAEGFGKIENS 294 (352)
Q Consensus 224 ~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~ 294 (352)
.-....-..-.+ ..-..+...++.+...+.+.++.++|+.+.++++.+|.+.+ +|...-...+..+ ....
T Consensus 340 vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~-~~PD 418 (475)
T KOG0258|consen 340 VDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALG-IAPD 418 (475)
T ss_pred hceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhC-CCCc
Confidence 666655422111 22345666788889999999999999999999999998865 4433211111110 0122
Q ss_pred HHHHHHHHHccCEEeccCCCCCCC-C--eEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 295 ESLCRYLLDKAQVALVPGDAFGDD-T--CIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 295 ~~~~~~l~~~~gi~i~~g~~~~~~-~--~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
.=.+..|++..||.++||++|+.. + ++|..+-.+. + ..+++++++-.+
T Consensus 419 ~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~i~~~~~fH~~ 469 (475)
T KOG0258|consen 419 EFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EIIEKFKKFHAE 469 (475)
T ss_pred HHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch--h-HHHHHHHHHHHH
Confidence 235678888999999999999864 3 5787776633 3 555555555443
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=228.44 Aligned_cols=292 Identities=15% Similarity=0.173 Sum_probs=212.7
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 100 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~ 100 (352)
+.++++++ . +++++++|+++++..++.+++++||+|+++.++|.+....++..|.+++.++++.+.++.+|++
T Consensus 51 ~~la~~~g-----~--~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 123 (361)
T cd06452 51 HDLAEFLG-----M--DEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPE 123 (361)
T ss_pred HHHHHHcC-----C--ceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHH
Confidence 99999986 3 8899999999999999999999999999999999888888999999999999876555679999
Q ss_pred HHHhhcc-------CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 101 VLESKLT-------EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 101 ~l~~~l~-------~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
.++++++ ++++++++++|+||+|...+ +++|+++|+++ |+++|+|++|+. +..+.+... .+
T Consensus 124 ~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~~~i~~~~~~~-~~~vivD~a~~~----g~~~~~~~~----~~ 191 (361)
T cd06452 124 GYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---AKKIAKVCHEY-GVPLLLNGAYTV----GRMPVSGKE----LG 191 (361)
T ss_pred HHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---HHHHHHHHHHc-CCeEEEECCccc----CCcCCCHHH----cC
Confidence 9999885 36889999999999999988 89999999999 999999999974 221122222 24
Q ss_pred ceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccc--------cCCChHHHHHHHHHhcccCCChHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT--------SGASSISQKAGVAALGLGYAGGEVVSKMVKAF 245 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (352)
.++++.|+||+++ ++.|+|++++++++++++.+....+. .+.+...+.++.++++. ..+..+... +.
T Consensus 192 ~d~~~~s~~K~l~-~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~-~~ 266 (361)
T cd06452 192 ADFIVGSGHKSMA-ASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPH---VKERVKRWD-EE 266 (361)
T ss_pred CCEEEecCCcccc-CCCCeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHH---HHHHHHHHH-HH
Confidence 5699999999998 56699999999999998866443221 11222233344444432 123333322 23
Q ss_pred HHHHHHHHHHhcccCCceecC--CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEE
Q 018665 246 RERRDFLVKSFGELEGVKMSE--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 323 (352)
Q Consensus 246 ~~~~~~l~~~l~~~~g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi 323 (352)
.++++++.+.|++++|++++. +....++.++.+........ ...++.++.++|.++ ||.+.. .+...++|+
T Consensus 267 ~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~~-gI~~~~---~~~~~~~ri 339 (361)
T cd06452 267 VEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKK---HKRRGYFLYSELKKR-GIHGIK---PGLTRYFKL 339 (361)
T ss_pred HHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhh---ccccchhHHHHHHHc-CceEEc---CCCceEEEE
Confidence 345578899999988888862 33444566665521000000 001345799999876 888532 234568999
Q ss_pred Eeec-CHHHHHHHHHHHHHHH
Q 018665 324 SYAA-SLTTLQAAVERIKKGL 343 (352)
Q Consensus 324 ~~~~-~~~~l~~~~~~l~~~~ 343 (352)
+... ++++++.+++.|+++.
T Consensus 340 ~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 340 STYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred EecCCCHHHHHHHHHHHHHHh
Confidence 9955 8899999999998765
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=230.01 Aligned_cols=280 Identities=16% Similarity=0.157 Sum_probs=211.3
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 100 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~ 100 (352)
+.++++++ .++.|++++|+ +++..++.+++++||+|+++.|+|..+...++..|.+++.++. .|++
T Consensus 68 ~~la~~~~------~~~~i~~~~G~-~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~ 133 (360)
T TIGR00858 68 EELAEWKG------TEAALLFSSGY-LANVGVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVE 133 (360)
T ss_pred HHHHHHhC------CCCEEEECchH-HHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHH
Confidence 88888775 45677777775 5555577888899999999999999999999999999888763 4788
Q ss_pred HHHhhccC----CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc--cccccCCCCCCc
Q 018665 101 VLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH--TSFASLPGMWER 174 (352)
Q Consensus 101 ~l~~~l~~----~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~--~~~~~~~~~~~~ 174 (352)
.+++.++. +++++++.+++|++|...+ +++|.++|+++ |+++|+||+|+.+.+..... .+...+.. .++
T Consensus 134 ~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~ 208 (360)
T TIGR00858 134 HLERLLEKNRGERRKLIVTDGVFSMDGDIAP---LPQLVALAERY-GAWLMVDDAHGTGVLGEDGRGTLEHFGLKP-EPV 208 (360)
T ss_pred HHHHHHHHcccCCCeEEEEeCCccCCCCCcC---HHHHHHHHHHc-CcEEEEECcccccCcCCCCCchHHhcCCCc-cCC
Confidence 88888853 4678888889999999999 89999999999 99999999998654432211 11222221 367
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhhhhcc--ccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
+++++|+||.+|++| ||+++++++++.+......+ +.+.++..+.++.++++. ....++.+++++++++.+
T Consensus 209 ~i~i~s~sK~~~~~g---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~----~~~~~~~~~~~~~~~~~l 281 (360)
T TIGR00858 209 DIQVGTLSKALGSYG---AYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALEL----IQEEPWRREKLLALIARL 281 (360)
T ss_pred cEEEEechhhhhccC---cEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHH----HhhCHHHHHHHHHHHHHH
Confidence 899999999998655 99999999988876543322 234555556666677754 223356778999999999
Q ss_pred HHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC---CCCeEEEEeec--
Q 018665 253 VKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAA-- 327 (352)
Q Consensus 253 ~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~---~~~~iRi~~~~-- 327 (352)
.+.|+++ ++.+. +..+.++|+.+++.. ++.++.+.|.++ ||.+.++..+. ..+++|++++.
T Consensus 282 ~~~L~~~-~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~-gI~v~~~~~~~~~~~~~~iRis~~~~~ 347 (360)
T TIGR00858 282 RAGLEAL-GFTLM-PSCTPIVPVIIGDNA-----------SALALAEELQQQ-GIFVGAIRPPTVPAGTSRLRLTLSAAH 347 (360)
T ss_pred HHHHHHc-CCccC-CCCCCEEEEEeCCHH-----------HHHHHHHHHHHC-CeeEeeeCCCCCCCCCceEEEEEcCCC
Confidence 9999987 67665 445667888876431 577899998865 99998765443 24589999996
Q ss_pred CHHHHHHHHHHHH
Q 018665 328 SLTTLQAAVERIK 340 (352)
Q Consensus 328 ~~~~l~~~~~~l~ 340 (352)
+++|+++++++|+
T Consensus 348 ~~~~i~~~l~~l~ 360 (360)
T TIGR00858 348 TPGDIDRLAEALK 360 (360)
T ss_pred CHHHHHHHHHhhC
Confidence 8899999998874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=232.90 Aligned_cols=294 Identities=13% Similarity=0.094 Sum_probs=220.6
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEecCCCCCChHH---HHHhcCCeEEEecccC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPE---MARIADATPVILPTRI 91 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~~~~vl~~~~~~~~~~~---~~~~~g~~v~~i~~~~ 91 (352)
+++.++++++ .++++|++++|+++++..++.++. ++++.|+++...|+++.. .++..|.+++.++++
T Consensus 48 ~r~~la~~~g-----~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~- 121 (381)
T PRK02948 48 CRKTFAEMIG-----GEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVD- 121 (381)
T ss_pred HHHHHHHHhC-----CCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeC-
Confidence 3388888886 678899999999999998888775 567899998877776554 467789999999986
Q ss_pred CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
.++.+|++++++.++++++++++++|+||||.++| +++|.++|+++ |+++++|++++. +..+..+. .
T Consensus 122 -~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~-~~~vivD~~~~~----g~~~~~~~----~ 188 (381)
T PRK02948 122 -KSGLIRLVDLERAITPDTVLASIQHANSEIGTIQP---IAEIGALLKKY-NVLFHSDCVQTF----GKLPIDVF----E 188 (381)
T ss_pred -CCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehh---HHHHHHHHHHc-CCEEEEEChhhc----cccccCcc----c
Confidence 33568999999999888999999999999999999 88999999999 999999987754 21112221 2
Q ss_pred CCceEEEeccccccccccceeEEEEcChhH-HHHHHh----hhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNK----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 246 (352)
.+.++++.|++|.+|.+| +|++++++++ +..... ......+++|.+.+.++.++++. ..++.++.+++++
T Consensus 189 ~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~---~~~~~~~~~~~~~ 263 (381)
T PRK02948 189 MGIDSLSVSAHKIYGPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAEN---ILKNMQEESLRFK 263 (381)
T ss_pred CCCCEEEecHHhcCCCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 356689999999988666 7888877664 111110 01123457899999999999875 2356788889999
Q ss_pred HHHHHHHHHhcccCCceecCCC-Cce----EEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC----
Q 018665 247 ERRDFLVKSFGELEGVKMSEPQ-GAF----YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---- 317 (352)
Q Consensus 247 ~~~~~l~~~l~~~~g~~~~~~~-~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~---- 317 (352)
++++++.+.|+++ ++++.... ..+ ++.+.++.. ++.++...|.+ .||.+..|..|..
T Consensus 264 ~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~l~~-~gI~v~~g~~c~~~~~~ 329 (381)
T PRK02948 264 ELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIKGI------------EGQYTMLECNR-RGIAISTGSACQVGKQE 329 (381)
T ss_pred HHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeCCC------------CHHHHHHhccc-CCEEEEchHhcCCCCCC
Confidence 9999999999988 65544221 111 122222321 56778877765 5999998875421
Q ss_pred ---------------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCCCC
Q 018665 318 ---------------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRPGV 350 (352)
Q Consensus 318 ---------------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~~~ 350 (352)
.+++|+|++. +++|++++++.|+++++.+-+++
T Consensus 330 p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~~~ 379 (381)
T PRK02948 330 PSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFYRGV 379 (381)
T ss_pred CCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 3689999987 88999999999999998776654
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=229.89 Aligned_cols=283 Identities=17% Similarity=0.208 Sum_probs=216.7
Q ss_pred HHHHHHHHhcCCCCC-CCcEEEeCChHHHHHHHHHHhcC---CCCEEEecCCCCCChH----HHHHhcCCeEEEecccCC
Q 018665 21 QQFVINLKENGLSYT-PDQILVSNGAKQSILQAVLAVCS---PGDEVIIPAPFWVSYP----EMARIADATPVILPTRIS 92 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l~~---~~~~vl~~~~~~~~~~----~~~~~~g~~v~~i~~~~~ 92 (352)
+.++++++ .+ ++++++++|++++++.++.++.. +|++|++++++|.+.. ..++..|.+++.++.+
T Consensus 50 ~~la~~~~-----~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-- 122 (373)
T cd06453 50 EKVARFIN-----APSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD-- 122 (373)
T ss_pred HHHHHHhC-----CCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC--
Confidence 88888886 44 67999999999999999999877 8899999999998853 3455789999999986
Q ss_pred CCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCC
Q 018665 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 172 (352)
Q Consensus 93 ~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
.++.+|++.+++.++++++++++++++||||...| +++|.++|+++ |+++++|++++.. ..+..+.. .
T Consensus 123 ~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~-~~~li~D~a~~~~----~~~~~~~~----~ 190 (373)
T cd06453 123 DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINP---VKEIGEIAHEA-GVPVLVDGAQSAG----HMPVDVQD----L 190 (373)
T ss_pred CCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCC---HHHHHHHHHHc-CCEEEEEhhhhcC----ceeeeccc----c
Confidence 34568999999999889999999999999999999 88999999999 9999999998742 21222222 2
Q ss_pred CceEEEeccccccccccceeEEEEcChhHHHHHHhhhh---------------------ccccCCChHHHHHHHHHhccc
Q 018665 173 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS---------------------QFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 173 ~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~ 231 (352)
+.++++.|++|.++ + .++|++++++++++.+..... ....+++.....++.++++..
T Consensus 191 ~~d~~~~s~~K~~~-~-~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l 268 (373)
T cd06453 191 GCDFLAFSGHKMLG-P-TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYL 268 (373)
T ss_pred CCCEEEeccccccC-C-CCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHH
Confidence 34478889999997 3 568999999998887654321 111245555555555555431
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC--CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 232 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
.....++++++.+++++++.+.|++++++++..+. .+.++++.+++. +..++.+.|.++ ||.+
T Consensus 269 --~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~l~~~-gi~i 333 (373)
T cd06453 269 --EKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI------------HPHDVATILDQY-GIAV 333 (373)
T ss_pred --HHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc------------CHHHHHHHHHHC-CEEe
Confidence 12345777888888999999999998888876322 244566666543 678899988864 9999
Q ss_pred ccCCCC--------CCCCeEEEEeec--CHHHHHHHHHHH
Q 018665 310 VPGDAF--------GDDTCIRISYAA--SLTTLQAAVERI 339 (352)
Q Consensus 310 ~~g~~~--------~~~~~iRi~~~~--~~~~l~~~~~~l 339 (352)
.+|..+ +.++++|++++. +++|++++++.|
T Consensus 334 ~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 334 RAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred ccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 877644 236799999997 999999998864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=233.96 Aligned_cols=304 Identities=17% Similarity=0.169 Sum_probs=220.7
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCe
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT 83 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~ 83 (352)
|+++..+.+++ +.+|++++ .++.|++++ |+.++..++.+++++||.|+++.++|.++...++..|.+
T Consensus 142 ~g~~~~~~ele------~~lA~~~g------~~~ai~~~~-G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~ 208 (489)
T PLN02483 142 GGTTKLHRELE------ELVARFVG------KPAAIVFGM-GYATNSTIIPALIGKGGLIISDSLNHNSIVNGARGSGAT 208 (489)
T ss_pred cCCcHHHHHHH------HHHHHHhC------CCcEEEECC-HHHHHHHHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCe
Confidence 66777788888 99999996 556666655 456666788889999999999999999999999999999
Q ss_pred EEEecccCCCCcccCHHHHHhhcc-------CC-----eeEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecc
Q 018665 84 PVILPTRISENFLLDPKVLESKLT-------EK-----SRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~-------~~-----~~~i~i-~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~ 150 (352)
++.++.+ |++.+++.++ ++ .+++++ ....|++|...+ +++|+++|+++ |+++|+||
T Consensus 209 v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~---l~~I~~la~~~-~~~livDE 277 (489)
T PLN02483 209 IRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK---LPEIVAVCKKY-KAYVYLDE 277 (489)
T ss_pred EEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC---HHHHHHHHHHc-CCEEEEEC
Confidence 9999853 3444444432 12 244444 445799999999 99999999999 99999999
Q ss_pred ccccccc--CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhc--cccCCChHHHHHHHH
Q 018665 151 IYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVA 226 (352)
Q Consensus 151 ~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 226 (352)
+|+.... +|.....+..+.. .+.+++++|+||++|+.| ||+++++++++.+...... +..++++....++.+
T Consensus 278 a~s~g~~G~~G~g~~~~~~v~~-~~~dI~~~SfSKs~g~~G---G~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~a 353 (489)
T PLN02483 278 AHSIGAVGKTGRGVCELLGVDP-ADVDIMMGTFTKSFGSCG---GYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVIS 353 (489)
T ss_pred cCccCccCCCCCchHHhcCCCc-ccCcEEEEecchhcccCc---eEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHH
Confidence 9984322 2222222233321 356799999999998666 9999999999998865432 233345455545555
Q ss_pred Hhccc--CCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 227 ALGLG--YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 227 ~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
+++.- ....+...+.+++++++++++.+.|+++ |+.+..+.++..+++.+.... ...++.++|+++
T Consensus 354 aL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~~~-----------~~~~~~~~Ll~~ 421 (489)
T PLN02483 354 AIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYNPA-----------KIPAFSRECLKQ 421 (489)
T ss_pred HHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECCHH-----------HHHHHHHHHHHC
Confidence 55420 0012334556788999999999999998 887776666666666654321 456888999876
Q ss_pred cCEEeccCCCCCC---CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 305 AQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 305 ~gi~i~~g~~~~~---~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
||.+.+...... .+.+|++++. ++|++++++++|+++.+.+.-
T Consensus 422 -GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~~ 469 (489)
T PLN02483 422 -NVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVGI 469 (489)
T ss_pred -CcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 999987433222 3689999986 899999999999999887654
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=227.50 Aligned_cols=291 Identities=17% Similarity=0.180 Sum_probs=214.7
Q ss_pred hhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEeccc
Q 018665 11 LQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 90 (352)
Q Consensus 11 ~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~ 90 (352)
.+++ +.+|++++ .+++++++|+++|+..++.+++++||.|+++.+.|.++...++..+.+...++
T Consensus 86 ~~le------~~ia~~~g-------~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-- 150 (393)
T TIGR01822 86 KELE------AKIAAFLG-------TEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA-- 150 (393)
T ss_pred HHHH------HHHHHHhC-------CCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC--
Confidence 5677 99999985 35777788999999999999999999999999999999988888877765443
Q ss_pred CCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 91 ISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 91 ~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
..|++++++.+++ ++++|++.+++||+|.+.| +++|+++|+++ |+++|+||+|+.... +....+
T Consensus 151 -----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~---l~~i~~la~~~-~~~li~De~~~~g~~-~~~~~~ 220 (393)
T TIGR01822 151 -----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP---LDEICDLADKY-DALVMVDECHATGFL-GPTGRG 220 (393)
T ss_pred -----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC---HHHHHHHHHHc-CCEEEEECCccccCc-CCCCCc
Confidence 1588999888864 6788888889999999999 99999999999 999999999863222 211111
Q ss_pred cccC-CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcc--ccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 165 FASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 165 ~~~~-~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
.... ....+.+++++|+||+++ |+|.||+++++++++.+......+ +.+.++..+.++.++++. .+..++.
T Consensus 221 ~~~~~~~~~~~di~~~s~sK~l~--g~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~----~~~~~~~ 294 (393)
T TIGR01822 221 SHELCGVMGRVDIITGTLGKALG--GASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEM----LEASNEL 294 (393)
T ss_pred hHHhcCCCCCCeEEEEEChHHhh--CCCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHH----HhcCHHH
Confidence 1111 111245699999999974 578999999999999887643222 223445555556666653 2234567
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC----C
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----D 317 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~----~ 317 (352)
+++++++++++.+.|++. |+.+..+... ++.+.+++.. ++.++++.|.++ ||.+. +..+. .
T Consensus 295 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~i~~~~~~-----------~~~~l~~~L~~~-gI~v~-~~~~~~~~~~ 359 (393)
T TIGR01822 295 RDRLWANTRYFRERMEAA-GFDIKPADHP-IIPVMLYDAV-----------LAQRFARRLLEE-GIYVT-GFFYPVVPKG 359 (393)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCCCCCCC-EEEEEeCCHH-----------HHHHHHHHHHHC-CeeEe-eeCCCCCCCC
Confidence 788999999999999876 7776544433 4445544321 567899999877 89887 33331 1
Q ss_pred CCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 318 DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 318 ~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
...+|++++. +++|+++++++|+++.++++
T Consensus 360 ~~~iRis~~~~~t~edi~~~~~~l~~~~~~~~ 391 (393)
T TIGR01822 360 QARIRVQISAAHTEEQLDRAVEAFTRIGRELG 391 (393)
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 2469998877 89999999999999987653
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=224.88 Aligned_cols=298 Identities=19% Similarity=0.305 Sum_probs=210.8
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC-CCCEEEecCCCCCChHH---HHHhcCC
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS-PGDEVIIPAPFWVSYPE---MARIADA 82 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-~~~~vl~~~~~~~~~~~---~~~~~g~ 82 (352)
++...+++ +++|++++ .+.+++++++++++..++.++.+ +||+|++++|+|.+... .+...|.
T Consensus 39 ~~~~~~l~------~~la~~~~-------~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~ 105 (353)
T PLN02721 39 DPTALRLE------EEMAKIFG-------KEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENGGISTLGGV 105 (353)
T ss_pred CHHHHHHH------HHHHHHhC-------CceeEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhcccchhhhcCc
Confidence 44467888 99999996 23456667777777777777776 89999999999875554 5778899
Q ss_pred eEEEecccCCCCcccCHHHHHhhcc-------CCeeEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLT-------EKSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~-------~~~~~i~i~~p-~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+++.++.+ .++.+|++.+++.++ +++++++++++ +||+|.++|.+++++|.++|+++ |+++|+|+++..
T Consensus 106 ~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~-g~~livD~a~~~ 182 (353)
T PLN02721 106 HPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRH-GLKLHIDGARIF 182 (353)
T ss_pred eeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHc-CCEEEEEchhhh
Confidence 99999875 345689999999997 57889998775 78999999999999999999999 999999999753
Q ss_pred cccCCCCccccccCCCCCCceEEEeccccccccccceeEE-EEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCC
Q 018665 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
.... ....+...... ....++.|+||+++. +.|+ ++.++++++.+......+..+++.....++......
T Consensus 183 ~~~~-~~~~~~~~~~~--~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--- 253 (353)
T PLN02721 183 NASV-ALGVPVHRLVK--AADSVSVCLSKGLGA---PVGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVAL--- 253 (353)
T ss_pred cchh-hhCCCHHHHhh--hCCEEEEecccccCC---ceeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHH---
Confidence 2110 00111111111 222556689999862 3454 678899988877665544433443333332222211
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCcee-cCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
.+..+.+ ++..++++.+.+.|++++++.+ ..+..++++|++++...+ .+...++++|.+ .||.+.++
T Consensus 254 -~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~L~~-~gi~v~~~ 321 (353)
T PLN02721 254 -QENVPKL-EDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSR---------ITAEKLCKSLEE-HGVLLMPG 321 (353)
T ss_pred -HHHHHHH-HHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCcc---------ccHHHHHHHHHh-CCcEEecC
Confidence 2333333 3345667889999998877754 334445568888865200 167889999985 49999987
Q ss_pred CCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 313 DAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 313 ~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
. +.++|++++. +++|+++++++|++++..
T Consensus 322 ~----~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 322 N----SSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred C----CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 3 6799999974 889999999999998764
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=216.83 Aligned_cols=292 Identities=21% Similarity=0.190 Sum_probs=234.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHH--hc----CCCCEEEecCCCCCChHHHHHhc---CCeEEEecccC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLA--VC----SPGDEVIIPAPFWVSYPEMARIA---DATPVILPTRI 91 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~--l~----~~~~~vl~~~~~~~~~~~~~~~~---g~~v~~i~~~~ 91 (352)
+.+|+.++ +++++|++|+|+|++.+.++.. .. +++.+|+++.-.|+...+.++.. |++|.+++++.
T Consensus 51 ~~iA~llg-----a~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~ 125 (386)
T COG1104 51 EQIAKLLG-----ADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDS 125 (386)
T ss_pred HHHHHHhC-----CCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCC
Confidence 99999998 8889999999999999999987 22 24679999999999998877765 99999999984
Q ss_pred CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
+..+|+++|++++++++.+|.+...||.+|++.| +++|.++|+++ ++++++|.+++. |+.+..+..+.
T Consensus 126 --~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQp---I~ei~~i~k~~-~i~fHvDAvQa~----Gkipi~~~~~~-- 193 (386)
T COG1104 126 --NGLVDLEQLEEALRPDTILVSIMHANNETGTIQP---IAEIGEICKER-GILFHVDAVQAV----GKIPIDLEELG-- 193 (386)
T ss_pred --CCeEcHHHHHHhcCCCceEEEEEecccCeeeccc---HHHHHHHHHHc-CCeEEEehhhhc----CceeccccccC--
Confidence 5569999999999999999999999999999999 99999999999 999999999986 55555544433
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHH--HHHH---hhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFV--AACN---KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 246 (352)
.++...|-+|..|..| +|+++.++... ..+. ......+.+.|.+...+..++++. ..+.++....+++
T Consensus 194 --vD~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~---a~~~~~~~~~~~~ 266 (386)
T COG1104 194 --VDLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEI---AVEELEEENARLR 266 (386)
T ss_pred --cceEEeehhhccCCCc--eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3478888999998666 67777655321 1121 122234567888888888888886 4566778888899
Q ss_pred HHHHHHHHHhccc-CCceecCC---CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCC----
Q 018665 247 ERRDFLVKSFGEL-EGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---- 318 (352)
Q Consensus 247 ~~~~~l~~~l~~~-~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~---- 318 (352)
..++++.+.|.+. |++.+... .-...+.+-+|.. .++.+...|-. .||.+..|+.|...
T Consensus 267 ~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv------------~gE~ll~~L~~-~gI~vStGSACsS~~~~p 333 (386)
T COG1104 267 KLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV------------EGESLLLALDL-AGIAVSTGSACSSGSLEP 333 (386)
T ss_pred HHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC------------cHHHHHHhccc-cCeEEeccccccCCCCCc
Confidence 9999999999975 77777633 2344455666664 78888777664 59999999988642
Q ss_pred ---------------CeEEEEeec--CHHHHHHHHHHHHHHHhhhCCC
Q 018665 319 ---------------TCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 319 ---------------~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
+.+|+|++. +++|++++++.++++++.+++.
T Consensus 334 ShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 334 SHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred cHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 589999998 8999999999999999988763
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=224.65 Aligned_cols=301 Identities=19% Similarity=0.200 Sum_probs=218.5
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
|....|..+++ +.+++++. ..+ .++.+++++| ++++..++.+++++||.|++++|.|..+...++..|.
T Consensus 70 ~~~~~g~~~l~------~~l~~~l~~~~g---~~~~i~~~sG-~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~ 139 (385)
T TIGR01825 70 VRTIAGTLRLH------EELEEKLAKFKK---TEAALVFQSG-FNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKA 139 (385)
T ss_pred cCcccCCcHHH------HHHHHHHHHHhC---CCcEEEECcH-HHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCC
Confidence 55667788888 88888887 444 2456777666 6677788888999999999999999999888888888
Q ss_pred eEEEecccCCCCcccCHHHHHhhccC----CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~----~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
++..++ .+|++++++.+++ +++++++++++||+|.+.| +++|.++|+++ |+++|+||+|+.+.+.
T Consensus 140 ~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~---~~~i~~l~~~~-~~~li~De~~~~~~~~ 208 (385)
T TIGR01825 140 TKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP---LPEIVELAERY-GAVTYVDDAHGSGVMG 208 (385)
T ss_pred ceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccC---HHHHHHHHHHh-CCEEEEECcccccCcC
Confidence 877664 2577788776643 6778888888999999999 89999999999 9999999999865443
Q ss_pred CCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcc--ccCCChHHHHHHHHHhcccCCChH
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
..............++++++.|+||.+|++| ||+++++++++.+......+ +...++..+.++.++++.. .+
T Consensus 209 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~ 282 (385)
T TIGR01825 209 EAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDEL---QR 282 (385)
T ss_pred CCCCccHhhcCCCcCCcEEEEeccHHhhcCC---CEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHH---hc
Confidence 2111111112222467899999999997555 99999999988887654322 2234566777777777641 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
..+..+++.++++.+.+.|+++ |+++..+.+.+ +.+.++... +..++++.|+++ ||.+.++....
T Consensus 283 -~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~L~~~-gi~v~~~~~~~ 347 (385)
T TIGR01825 283 -SPELMERLWDNTRFFKAGLGKL-GYDTGGSETPI-TPVVIGDEK-----------AAQEFSRRLFDE-GIFAQSIVFPT 347 (385)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE-EEEEECCHH-----------HHHHHHHHHHHC-CcEEcccCCCC
Confidence 1245666777889999999887 88877665554 444443210 467899999987 99885432221
Q ss_pred ---CCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 317 ---DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 317 ---~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
...++|++++. +++++++++++|++++++.
T Consensus 348 ~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 348 VPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred CCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence 23689998864 9999999999999998654
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=223.42 Aligned_cols=291 Identities=13% Similarity=0.128 Sum_probs=218.9
Q ss_pred HHHHHHHHhcCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCCh--HHHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTP--DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~--~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~--~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ .++ ++|++|+|+|++++.++.++..+++.+++..+.+++. ...++..|.+++.++++. +..
T Consensus 42 ~~la~l~~-----~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~--~~~ 114 (363)
T TIGR02326 42 QQLLALAT-----AEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGE--VEP 114 (363)
T ss_pred HHHHHHhC-----CCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC--CCC
Confidence 78888876 444 3799999999999999999988888887776666555 366788999999999863 445
Q ss_pred cCHHHHHhhccC--CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 97 LDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 97 ~d~~~l~~~l~~--~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
+|++.+++.++. +++++.+++++||||..+| +++|.++|+++ |+++|+|++++. |..+..+.. .+.
T Consensus 115 ~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~-g~~livD~~~~~----g~~~~~~~~----~~~ 182 (363)
T TIGR02326 115 PDVVEVEAILAADPAITHIALVHCETTTGILNP---IEAVAKLAHRH-GKVTIVDAMSSF----GGIPIDIAE----LHI 182 (363)
T ss_pred CCHHHHHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHHHHHc-CCEEEEEccccc----cCcccchhh----cCc
Confidence 899999999874 4567888999999999999 89999999999 999999998764 222333332 234
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhhh------------------hccccCCChHHHHHHHHHhcccCCChH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------------------SQFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
+++++|++|+++ ++.++|+++++++.++.+.... ....++++.+.+.++.++++.-.. ..
T Consensus 183 D~~~~s~~K~l~-~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~-~g 260 (363)
T TIGR02326 183 DYLISSANKCIQ-GVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEK-EG 260 (363)
T ss_pred cEEEecCccccc-cCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHH-hh
Confidence 488999999985 4445899999998877653210 012245777888887777754110 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCC---CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
.++++.++++++++++.+.|+++ |+....+ +.+...++.+++... .+..++.+.|.++ ||.+.+|.
T Consensus 261 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~L~~~-gi~v~~g~ 329 (363)
T TIGR02326 261 GVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPD---------YRFADFYQRLKEQ-GFVIYPGK 329 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCCC---------CCHHHHHHHHHHC-CEEEECCc
Confidence 36778889999999999999887 7776533 345556777765210 1567888888866 99999987
Q ss_pred CCCCCCeEEEEee-c-CHHHHHHHHHHHHHHHh
Q 018665 314 AFGDDTCIRISYA-A-SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 314 ~~~~~~~iRi~~~-~-~~~~l~~~~~~l~~~~~ 344 (352)
.+ ..+++||++. . +.++++++++.|++++.
T Consensus 330 ~~-~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 330 VS-QVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred CC-CCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 65 3579999964 4 89999999999998763
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=228.46 Aligned_cols=293 Identities=16% Similarity=0.195 Sum_probs=211.2
Q ss_pred CChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHHHHhcCCeEEE
Q 018665 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVI 86 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~~~~g~~v~~ 86 (352)
...+++ +.+|++++ .++.|++++ |++++..++..+.+ +++.|+++...|.++...++..|.++..
T Consensus 92 ~~~~Le------~~la~~~g------~~~~i~~~s-G~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~ 158 (410)
T PRK13392 92 PHVLLE------RELADLHG------KESALLFTS-GYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQV 158 (410)
T ss_pred HHHHHH------HHHHHHhC------CCCEEEECc-HHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEE
Confidence 455677 99999986 345555555 46778778877653 7788888777888888888889998877
Q ss_pred ecccCCCCcccCHHHHHhhc----cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 87 LPTRISENFLLDPKVLESKL----TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 87 i~~~~~~~~~~d~~~l~~~l----~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
++.+ |.+.+++.+ .+++++|++++|+||+|.+.| +++|.++|+++ |+++|+||+|+...+....
T Consensus 159 ~~~~-------d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~---l~~i~~l~~~~-~~~livDea~~~g~~g~~g- 226 (410)
T PRK13392 159 FRHN-------DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAP---IEAICDLADRY-NALTYVDEVHAVGLYGARG- 226 (410)
T ss_pred EeCC-------CHHHHHHHHHhccCCCCEEEEEeCCCCCCccccc---HHHHHHHHHHc-CCEEEEECCccccCcCCCC-
Confidence 7532 333444433 357889999999999999999 99999999999 9999999999843332221
Q ss_pred cccccCCCCCC-ceEEEeccccccccccceeEEEEcChhHHHHHHhhhhc--cccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 163 TSFASLPGMWE-RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 163 ~~~~~~~~~~~-~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
..+.......+ ..++++|+||.+|++| ||+++++++++.+++.... ++.+.+++.+.++.++++. .+...
T Consensus 227 ~g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~----~~~~~ 299 (410)
T PRK13392 227 GGIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRH----LKTSQ 299 (410)
T ss_pred CchhhhccCCCCCcEEEEEChHhhhccc---chhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHH----HhcCH
Confidence 11111111112 2388899999998777 8999999999988776543 2445566778888888875 22233
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC---
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--- 316 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~--- 316 (352)
..+++++++++++.+.|++. |+.+..+.+++ +.+.++... ...+++++|+++.||.+.+.....
T Consensus 300 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~i~~~~~~-----------~~~~~~~~L~~~~GI~v~~~~~p~~~~ 366 (410)
T PRK13392 300 TERDAHQDRVAALKAKLNAN-GIPVMPSPSHI-VPVMVGDPT-----------LCKAISDRLMSEHGIYIQPINYPTVPR 366 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE-EEEEeCCHH-----------HHHHHHHHHHHhCCEEEeeeCCCCCCC
Confidence 45677888899999999987 88877665555 334443210 456888888765699998864332
Q ss_pred CCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 317 DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 317 ~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
...++|++++. +++|++++++.|+++.+++
T Consensus 367 ~~~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 367 GTERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred CCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 23689999975 8999999999999998765
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=224.75 Aligned_cols=298 Identities=16% Similarity=0.135 Sum_probs=230.3
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCCh--HHHHHhcCCeEEEecccCCCCccc
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLL 97 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~--~~~~~~~g~~v~~i~~~~~~~~~~ 97 (352)
+.+++.+. ..|.+ ..+.++++++++++++.++..++++||+|+++++.|++. ...++..|.+++.++.+.+. .+
T Consensus 45 ~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~--~~ 121 (401)
T PLN02409 45 KELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQ--GA 121 (401)
T ss_pred HHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCC--CC
Confidence 55555555 44432 235789999999999999999999999999999988766 46778899999999987433 37
Q ss_pred CHHHHHhhccC----CeeEEEEcCCCCCcccCCCHHHHHHHHHH--HHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 98 DPKVLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIARI--VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 98 d~~~l~~~l~~----~~~~i~i~~p~nptG~~~~~~~l~~l~~~--~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
|++++++.+++ +++++++++++||||.++| +++|.++ |+++ |+++|+|++++. +..+..+. .
T Consensus 122 ~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~-g~~~vvD~v~s~----g~~~id~~----~ 189 (401)
T PLN02409 122 DLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND---LAGVRKLLDCAQH-PALLLVDGVSSI----GALDFRMD----E 189 (401)
T ss_pred CHHHHHHHHhhCcCCCccEEEEEeecccccccCC---HHHHHHHHhhhcc-CcEEEEEccccc----CCcccccc----c
Confidence 99999999975 7899999999999999999 5566666 9999 999999999874 22222221 1
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHHHHHhhhh------------------ccccCCChHHHHHHHHHhcccCC
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------------------QFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
++.++++.|.+|+++ ++.++|+++.++++++++..... .+.++++...+.++.++++.-
T Consensus 190 ~~~D~~~~s~~K~l~-~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~-- 266 (401)
T PLN02409 190 WGVDVALTGSQKALS-LPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLI-- 266 (401)
T ss_pred cCccEEEEcCccccC-cCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH--
Confidence 344588888899996 33479999999998887653210 113357777788888887752
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
.....+++.++.+++.+++.+.|+++ |++++.+. .+..+++.+|+.. ++.++.+.|.+++||.+
T Consensus 267 ~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~-----------~~~~l~~~l~~~~~i~i 334 (401)
T PLN02409 267 FEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGI-----------DSAEIVKNAWKKYNLSL 334 (401)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCCC-----------CHHHHHHHHHHhCCEEE
Confidence 24567888899999999999999887 88776532 3345667777543 77889989988889999
Q ss_pred ccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 310 VPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 310 ~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
..|.+....+.+||+... +.+++.+++..|++++.+++.
T Consensus 335 ~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g~ 375 (401)
T PLN02409 335 GLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVGY 375 (401)
T ss_pred EcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 988765457899999987 889999999999999988763
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=225.60 Aligned_cols=297 Identities=19% Similarity=0.173 Sum_probs=214.3
Q ss_pred CCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEE
Q 018665 7 SQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~ 85 (352)
..|..+++ +.+++++. ..+ .+++|++++| ++++..++.+++++||.|++++|+|+++...++..+.+++
T Consensus 82 ~~G~~~l~------~~l~~~la~~~g---~~~~i~~tsG-~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~ 151 (397)
T PRK06939 82 ICGTQDLH------KELEEKLAKFLG---TEDAILYSSC-FDANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRY 151 (397)
T ss_pred ccCCcHHH------HHHHHHHHHHhC---CCcEEEEcCh-HHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceE
Confidence 35667777 66666666 444 2367777777 7788888999999999999999999999999999999887
Q ss_pred EecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC-
Q 018665 86 ILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA- 158 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~- 158 (352)
.++. .|++.+++.+++ ++++|+..+.+|++|...+ +++|.++|+++ |+++|+||+|+.....
T Consensus 152 ~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~---~~~l~~la~~~-~~~li~De~~~~g~~~~ 220 (397)
T PRK06939 152 RYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP---LPEICDLADKY-DALVMVDDSHAVGFVGE 220 (397)
T ss_pred EeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC---HHHHHHHHHHh-CCEEEEECcccccCcCC
Confidence 7764 377888777753 5677777777899999877 99999999999 9999999999632121
Q ss_pred -CCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcc--ccCCChHHHHHHHHHhcccCCCh
Q 018665 159 -PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 159 -~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
+........+ ..+.+++++|+||+++ |.|+||+++++++++.+......+ ..++++..+.++.++++. .
T Consensus 221 ~~~~~~~~~~~--~~~~~i~~~S~sK~~~--g~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~----~ 292 (397)
T PRK06939 221 NGRGTVEHFGV--MDRVDIITGTLGKALG--GASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLEL----L 292 (397)
T ss_pred CCCCHHHHcCC--CCCCcEEEEECHHHhC--ccCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHH----H
Confidence 1111111122 1245699999999994 348999999999999887643322 223344445555555553 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
....+++++++++++.+.+.|+++ ++....+.++++ ++.++... ++.++++.|.++ ||.+.++...
T Consensus 293 ~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~L~~~-gI~v~~~~~~ 358 (397)
T PRK06939 293 EESDELRDRLWENARYFREGMTAA-GFTLGPGEHPII-PVMLGDAK-----------LAQEFADRLLEE-GVYVIGFSFP 358 (397)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCEE-EEEECCHH-----------HHHHHHHHHHHC-CceEeeeCCC
Confidence 223567788999999999999887 776655555553 33444321 567899999987 9998864321
Q ss_pred C---CCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 316 G---DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 316 ~---~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
. ..+++|++++. +++++++++++|++++++.
T Consensus 359 ~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 359 VVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred CCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 1 13689999865 8899999999999998764
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=225.36 Aligned_cols=285 Identities=18% Similarity=0.178 Sum_probs=210.2
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh---cCCCCEEEecCCCCCChH----HHHHhcCCeEEEecccCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISE 93 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~~~~~~vl~~~~~~~~~~----~~~~~~g~~v~~i~~~~~~ 93 (352)
+.++++++ .++++|++++|+++++..++.++ .++||+|+++.+.|.+.. ..++..|.+++.++++++
T Consensus 67 ~~ia~~~~-----~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~- 140 (397)
T TIGR01976 67 EAVADLLN-----ADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA- 140 (397)
T ss_pred HHHHHHcC-----CCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc-
Confidence 88888886 55568999999999998777765 678999999999987754 456778999999998742
Q ss_pred CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 94 ~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
++.+|++++++.++++++++++++|+||||...| +++|.++|+++ |+++++|++++. +.....+.. .+
T Consensus 141 ~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~-~~~~ivD~a~~~----~~~~~~~~~----~~ 208 (397)
T TIGR01976 141 TGELHPDDLASLLSPRTRLVAVTAASNTLGSIVD---LAAITELVHAA-GALVVVDAVHYA----PHGLIDVQA----TG 208 (397)
T ss_pred CCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCC---HHHHHHHHHHc-CCEEEEehhhhc----cccCCCHHH----cC
Confidence 3568999999999889999999999999999999 99999999999 999999999853 222222221 34
Q ss_pred ceEEEeccccccccccceeEEEEcChhHHHHHHhhhhc----------cccCCChHHHHHHHHHhcccC-CC--------
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ----------FTSGASSISQKAGVAALGLGY-AG-------- 234 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~-~~-------- 234 (352)
..+++.|++|++| .++|++++++++++.+...... ..++++.....++.++++.-. ..
T Consensus 209 ~d~~~~s~~K~~g---~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~ 285 (397)
T TIGR01976 209 ADFLTCSAYKFFG---PHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRR 285 (397)
T ss_pred CCEEEEechhhcC---CceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchh
Confidence 4577899999986 3589999999988776543221 112344444444444443210 00
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHhcccCCceecCC----CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 235 ---GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 235 ---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
....++..++..+..+++.+.|+++++++++.+ ..+.++.+.+++. ++.++.++|.++ ||
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~~~-gI 352 (397)
T TIGR01976 286 ERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGL------------PPQRVVRRLADQ-GI 352 (397)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCc------------CHHHHHHHHHHC-Ce
Confidence 012566677788888999999998867888754 1233455555532 677899998866 99
Q ss_pred EeccCCCCC-----------CCCeEEEEeec--CHHHHHHHHHHH
Q 018665 308 ALVPGDAFG-----------DDTCIRISYAA--SLTTLQAAVERI 339 (352)
Q Consensus 308 ~i~~g~~~~-----------~~~~iRi~~~~--~~~~l~~~~~~l 339 (352)
.+..+..|. ..+++|+|++. +++|++++++.|
T Consensus 353 ~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 353 DAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred EEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 999876553 24689999987 889999998864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-29 Score=225.82 Aligned_cols=290 Identities=17% Similarity=0.141 Sum_probs=217.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc---CCCCEEEecCCCCCChHH---HHHhcCCeEEEecccCCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISEN 94 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~~~~~vl~~~~~~~~~~~---~~~~~g~~v~~i~~~~~~~ 94 (352)
+.++++++ .++++|++++|+|++++.++.++. .++++|++....|+++.. .++..|.+++.++++. +
T Consensus 49 ~~la~~~g-----~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~ 121 (379)
T TIGR03402 49 EQVAKLLG-----AEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE--E 121 (379)
T ss_pred HHHHHHhC-----CCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCC--C
Confidence 77888876 667899999999999999988763 456789998888877654 3445799999999863 3
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
+.+|++++++.++++++++++++++||||..+| +++|.++|+++ |+++++|++++. |..+..+.. .+-
T Consensus 122 g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~I~~l~~~~-g~~vivD~~~~~----g~~~~~~~~----~~~ 189 (379)
T TIGR03402 122 GRLDLEELRAAITDDTALVSVMWANNETGTIFP---IEEIGEIAKER-GALFHTDAVQAV----GKIPIDLKE----MNI 189 (379)
T ss_pred CcCCHHHHHHhcCCCcEEEEEEcccCCeeeccc---HHHHHHHHHHc-CCEEEEECcccc----cccccCccc----CCC
Confidence 458999999999989999999999999999999 88999999999 999999999974 332333332 234
Q ss_pred eEEEeccccccccccceeEEEEcChhHHH--HHHh---hhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVA--ACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 249 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (352)
++++.|.+|.+|.+ ++|+++.+++..- .+.. .......+++.....++.++++. ..+++++..++.++++
T Consensus 190 D~~~~s~~K~~gp~--G~g~l~v~~~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~~~~~~~~~~~l~ 264 (379)
T TIGR03402 190 DMLSLSGHKLHGPK--GVGALYIRKGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAEL---ATEHLEEENTRVRALR 264 (379)
T ss_pred CEEEEcHHHcCCCC--ceEEEEECCCCCCCCcccCCccCCCcCCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHH
Confidence 58888999966533 4788877654310 0100 00122456777788888888875 3456778788899999
Q ss_pred HHHHHHhcc-cCCceecCCC----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC-------
Q 018665 250 DFLVKSFGE-LEGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------- 317 (352)
Q Consensus 250 ~~l~~~l~~-~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~------- 317 (352)
+++.+.|++ ++++.+..+. ++. +.+.++.. ++.++.+.|.+ .||.+.+|..|..
T Consensus 265 ~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~~l~~-~gI~v~~g~~c~~~~~~~~~ 330 (379)
T TIGR03402 265 DRLEAGLLARIPDARLNGDPTKRLPNT-VNISFEYI------------EGEAILLLLDM-EGICASSGSACTSGSLEPSH 330 (379)
T ss_pred HHHHHHHHhhCCCEEEeCCCccCCCCE-EEEEecCC------------CHHHHHHhhcc-CCEEEEchhhcCCCCCCcCH
Confidence 999999985 7888776532 222 22233332 67788888765 5999999877643
Q ss_pred ------------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 318 ------------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 318 ------------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
++.+|+|++. +++|++++++.|+++++.++.
T Consensus 331 ~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 331 VLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred HHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2689999998 899999999999999887653
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=224.41 Aligned_cols=314 Identities=16% Similarity=0.152 Sum_probs=231.1
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
+.|+++.|..+++ ++++++++ .+++++++|+++|+..++.+++++||.| +++|.|..+...+...|
T Consensus 47 ~~Y~~~~g~~~Le------eaia~~~g-------~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~G 112 (431)
T cd00617 47 EAYAGSKSFYDLE------DAVQDLFG-------FKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHIEANG 112 (431)
T ss_pred CccCCCCCHHHHH------HHHHHHHC-------CCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhCC
Confidence 3699999999999 99999985 5689999999999999999999999977 68999999999999999
Q ss_pred CeEEEecccCCCC--------cccCHHHHHhhccCC----eeEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEe
Q 018665 82 ATPVILPTRISEN--------FLLDPKVLESKLTEK----SRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLS 148 (352)
Q Consensus 82 ~~v~~i~~~~~~~--------~~~d~~~l~~~l~~~----~~~i~i~~p~npt-G~~~~~~~l~~l~~~~~~~~~~~liv 148 (352)
..++.++++++.+ +.+|+++|++.++++ +++|+++.|+||+ |++.+.+++++|.++|+++ |+++|.
T Consensus 113 a~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~-gi~li~ 191 (431)
T cd00617 113 AVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKY-GIPVVL 191 (431)
T ss_pred CEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEE
Confidence 9999999975432 349999999999754 7889999999997 9999999999999999999 999999
Q ss_pred ccccccc--cc-----CCCCccccccCCCCCCceEEEeccccccccccce------eEEEEcCh-hHHHHHHhhh----h
Q 018665 149 DEIYEHI--IY-----APATHTSFASLPGMWERTLTVNGFSKAFAMTGWR------LGYIAGPK-HFVAACNKIQ----S 210 (352)
Q Consensus 149 D~~~~~~--~~-----~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~------~g~l~~~~-~~~~~~~~~~----~ 210 (352)
|+++... .+ ++....++... .+.+.|++|.+.+.|++ .|++++++ +++++++... .
T Consensus 192 DaAr~~~na~~i~~r~~g~~~~si~ei------~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~ 265 (431)
T cd00617 192 DAARFAENAYFIKEREEGYRDKSIAEI------AREMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEG 265 (431)
T ss_pred EchhhHhhhhhhhcccccccCCCHHHH------HHHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCC
Confidence 9996521 11 12223333221 12234444444444443 56888876 5888877432 1
Q ss_pred c-cccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCC-cccCC
Q 018665 211 Q-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGF 288 (352)
Q Consensus 211 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~ 288 (352)
. ...+.+.....+++.+++... + .+.+...++ +++++.+.|++. |+.+..|.+|+++|++.+...+. ...++
T Consensus 266 ~~~~gG~~~r~~~A~A~gL~e~~---~-~~~l~~~~~-~r~~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~ 339 (431)
T cd00617 266 FVTYGGMAGRDMEALAQGLREAV---E-EDYLRHRVE-QVRYLGDRLDEA-GVPIVEPAGGHAVFIDAREFLPHIPQEQF 339 (431)
T ss_pred ccccccccHHHHHHHHHHHHhcc---c-HHHHHHHHH-HHHHHHHHHHHC-CCCccCCCcceEEEEEhHHhcCCCCcccC
Confidence 1 123445555555544665311 1 223333344 458899999998 99999999999999998753211 11112
Q ss_pred CCCCChHHHHHHHHHccCEEecc-CCCC-C-----------CCCeEEEEeec---CHHHHHHHHHHHHHHHhhh
Q 018665 289 GKIENSESLCRYLLDKAQVALVP-GDAF-G-----------DDTCIRISYAA---SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 289 ~~~~~~~~~~~~l~~~~gi~i~~-g~~~-~-----------~~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~ 346 (352)
++.+++.+|+++.||.+.. |+.. + ....+||.++. +.++++...+.|..++++-
T Consensus 340 ----~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~ 409 (431)
T cd00617 340 ----PAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERR 409 (431)
T ss_pred ----cHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhH
Confidence 5889999999998998543 3311 1 12579999987 8899999999999888753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=224.96 Aligned_cols=294 Identities=15% Similarity=0.180 Sum_probs=210.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCC-------CEEEecCCCCCChHHHHHhcC-CeEE---Eecc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-------DEVIIPAPFWVSYPEMARIAD-ATPV---ILPT 89 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~-------~~vl~~~~~~~~~~~~~~~~g-~~v~---~i~~ 89 (352)
+.+++++.+. ...+++++++|+++|+..+++.+...+ ++|++..+.|+++.......+ .... ..++
T Consensus 84 ~~la~~l~~~---~~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 160 (396)
T PRK02627 84 EELAEKLVEL---SGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPL 160 (396)
T ss_pred HHHHHHHHhh---cCCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCC
Confidence 6666766622 134899999999999999999764322 679999999988765444332 2111 1111
Q ss_pred cCCCCc----ccCHHHHHhhccCCeeEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 90 RISENF----LLDPKVLESKLTEKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 90 ~~~~~~----~~d~~~l~~~l~~~~~~i~i~~p~nptG-~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
. .++ ..|++.+++.+++++++|++++++||+| .+++.+.+++|.++|+++ |+++|+||+|+++.+++.. .+
T Consensus 161 ~--~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DE~~~g~g~~g~~-~~ 236 (396)
T PRK02627 161 V--EGFIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDEN-GILLILDEVQTGMGRTGKL-FA 236 (396)
T ss_pred C--CCceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhcCCCccCce-ee
Confidence 1 111 1289999999988899999999999999 688999999999999999 9999999999988766532 22
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
+..... .++ +.++||.++ +|+|+||+++++++++.+.......+++.+++.+.++.++++.... .+..++..+.
T Consensus 237 ~~~~~~-~pd---i~t~sK~~~-~G~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~ 310 (396)
T PRK02627 237 YQHYGI-EPD---IMTLAKGLG-GGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLENAAEV 310 (396)
T ss_pred ehhcCC-CCC---EEEEcchhh-CCcccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence 212211 122 457999999 9999999999999988876554556678999999999999875221 2333444444
Q ss_pred HHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEE
Q 018665 245 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324 (352)
Q Consensus 245 ~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~ 324 (352)
.+..++.+.+.+.+++.+.... ..|.++|++++. +..++++.|.++ ||.+.|++ .+++|++
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~i~~~~-------------~~~~~~~~l~~~-Gv~v~~~~----~~~lRi~ 371 (396)
T PRK02627 311 GEYLRAKLRELLEKYPGIKEVR-GLGLMIGIELDR-------------PAAEIVKKALEK-GLLINVTG----DNVLRLL 371 (396)
T ss_pred HHHHHHHHHHHHHhCCCeeeec-cCcEEEEEEecC-------------cHHHHHHHHHHC-CeEEeecC----CCEEEEE
Confidence 4444444444444443333332 357778888732 678899999987 99998863 4789998
Q ss_pred eec--CHHHHHHHHHHHHHHHhhh
Q 018665 325 YAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 325 ~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
++. +++++++++++|+++++++
T Consensus 372 ~~~~~~~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 372 PPLIISKEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred CCcccCHHHHHHHHHHHHHHHHhh
Confidence 863 9999999999999998764
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=223.68 Aligned_cols=287 Identities=18% Similarity=0.185 Sum_probs=211.2
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 100 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~ 100 (352)
+.+|++++ .+.+++++|+++|+..++.++.++++.|++..+.|.++...++..|.+++.++. .|++
T Consensus 106 ~~la~~~g-------~~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~ 171 (407)
T PRK07179 106 KKLAAFTG-------FESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVD 171 (407)
T ss_pred HHHHHHhC-------CCcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHH
Confidence 99999985 356788999999999999999999999999999999888888888888766642 4899
Q ss_pred HHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEe
Q 018665 101 VLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 179 (352)
Q Consensus 101 ~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (352)
.|++.+++ ++++|++++++||+|.+.| +++|.++|+++ |+++|+||+|+...+.......+...+.....++++.
T Consensus 172 ~l~~~l~~~~~~lV~v~~v~n~tG~i~p---l~~I~~l~~~~-~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~ 247 (407)
T PRK07179 172 HLRRQIERHGPGIIVVDSVYSTTGTIAP---LADIVDIAEEF-GCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITA 247 (407)
T ss_pred HHHHHHHhcCCeEEEECCCCCCCCcccc---HHHHHHHHHHc-CCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEe
Confidence 99999875 5788889999999999999 88999999999 9999999999853322111111222221112358899
Q ss_pred ccccccccccceeEEEEcChhHHHHHHhhhhc--cccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhc
Q 018665 180 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 257 (352)
Q Consensus 180 s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 257 (352)
|++|.+| + |+|++++++++++.+...... ++.+.++...+++.++++. .....+.+++++++++++.+.|+
T Consensus 248 S~sK~~g-~--~~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~----~~~~~~~~~~l~~~~~~l~~~L~ 320 (407)
T PRK07179 248 SLAKAFA-G--RAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEV----IESADDRRARLHANARFLREGLS 320 (407)
T ss_pred echHhhh-c--cCeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999996 2 689999999888877654322 3333444444445555554 22234567889999999999999
Q ss_pred ccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec----cCCCCCCCCeEEEEeec--CHHH
Q 018665 258 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDAFGDDTCIRISYAA--SLTT 331 (352)
Q Consensus 258 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~----~g~~~~~~~~iRi~~~~--~~~~ 331 (352)
++ |+++. . .+.++++.++... +...+.+.|.++ ||.+. |+. ....+++||+++. +++|
T Consensus 321 ~~-g~~v~-~-~~~i~~l~~~~~~-----------~~~~~~~~L~~~-GI~~~~~~~p~~-~~~~~~lRis~~~~~t~ed 384 (407)
T PRK07179 321 EL-GYNIR-S-ESQIIALETGSER-----------NTEVLRDALEER-NVFGAVFCAPAT-PKNRNLIRLSLNADLTASD 384 (407)
T ss_pred Hc-CCCCC-C-CCCEEEEEeCCHH-----------HHHHHHHHHHHC-CceEeeecCCCC-CCCCceEEEEECCCCCHHH
Confidence 87 77765 2 3455667664321 456777777765 88732 211 1124789999997 9999
Q ss_pred HHHHHHHHHHHHhhhCC
Q 018665 332 LQAAVERIKKGLLTLRP 348 (352)
Q Consensus 332 l~~~~~~l~~~~~~~~~ 348 (352)
++++++.|++++++..-
T Consensus 385 i~~~~~~l~~~~~~~~~ 401 (407)
T PRK07179 385 LDRVLEVCREARDEVDL 401 (407)
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 99999999999987654
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=223.35 Aligned_cols=279 Identities=14% Similarity=0.180 Sum_probs=200.8
Q ss_pred CCcEEEeCChHHHHHHHHHHh----cCCCC----EEEecCCCCCChHHHHHhcCCeEEEecc--cCCCCcc----cCHHH
Q 018665 36 PDQILVSNGAKQSILQAVLAV----CSPGD----EVIIPAPFWVSYPEMARIADATPVILPT--RISENFL----LDPKV 101 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l----~~~~~----~vl~~~~~~~~~~~~~~~~g~~v~~i~~--~~~~~~~----~d~~~ 101 (352)
.+++++++|+++|++.+++++ .++|+ +|++.++.|+++.......+......+. +...++. .|++.
T Consensus 88 ~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 167 (389)
T PRK01278 88 ADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEA 167 (389)
T ss_pred CCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHH
Confidence 478999999999999998876 33444 8999999999887665544332222110 0011111 48999
Q ss_pred HHhhccCCeeEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEec
Q 018665 102 LESKLTEKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 180 (352)
Q Consensus 102 l~~~l~~~~~~i~i~~p~nptG-~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 180 (352)
+++.+++++++|+++.++|++| .++|.+++++|.++|+++ |+++|+||+|.++.+.+... ........ .-+.+
T Consensus 168 l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~~-~~~~~~~~----pdi~t 241 (389)
T PRK01278 168 LKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDEN-GLLLIFDEVQCGMGRTGKLF-AHEWAGVT----PDIMA 241 (389)
T ss_pred HHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCcce-eecccCCC----CCEEE
Confidence 9999988899999998888998 788999999999999999 99999999999887665421 11111111 12568
Q ss_pred cccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhc---
Q 018665 181 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG--- 257 (352)
Q Consensus 181 ~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--- 257 (352)
+||.++ +|+|+|++++++++++.+.......+++.|++.+.++.++++... .+ +..++++++.+.+.+.|+
T Consensus 242 ~sK~l~-~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--~~---~~~~~~~~~~~~l~~~l~~l~ 315 (389)
T PRK01278 242 VAKGIG-GGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVIL--AP---GFLDNVQRMGLYLKQKLEGLV 315 (389)
T ss_pred Eehhcc-CCcceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHh--hh---HHHHHHHHHHHHHHHHHHHHH
Confidence 999998 899999999999998888766666777899999999988886411 11 122223333333333332
Q ss_pred -ccCC-ceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHH
Q 018665 258 -ELEG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQ 333 (352)
Q Consensus 258 -~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~ 333 (352)
+.++ +..+. ..|.+++++++. ++.+++++|+++ ||.+.|++ .+++|++++. ++++++
T Consensus 316 ~~~~~~~~~v~-g~G~~~~i~~~~-------------~~~~~~~~l~~~-GV~~~p~~----~~~lR~~p~~~~~~~~i~ 376 (389)
T PRK01278 316 DRFPDVIEEVR-GKGLLLGLKCVV-------------PNRDLVQALRDE-GLLTVGAG----DNVVRLLPPLIITEEEID 376 (389)
T ss_pred hhCCCceeeEe-cccEEEEEEEec-------------CHHHHHHHHHHC-CeEEeecC----CCEEEEeCCcccCHHHHH
Confidence 2332 22233 356777777643 577899999987 99999873 5799999764 899999
Q ss_pred HHHHHHHHHHhh
Q 018665 334 AAVERIKKGLLT 345 (352)
Q Consensus 334 ~~~~~l~~~~~~ 345 (352)
+++++|++++++
T Consensus 377 ~~l~~l~~~l~~ 388 (389)
T PRK01278 377 EALERLERAAES 388 (389)
T ss_pred HHHHHHHHHHHh
Confidence 999999999865
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=220.33 Aligned_cols=290 Identities=13% Similarity=0.150 Sum_probs=215.1
Q ss_pred HHHHHHHHhcCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC--hHHHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTP--DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~--~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~--~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ +++ ..|++++|+++++..++.++..+++++++..+.+++ +...++..|.+++.++++. ++.
T Consensus 38 ~~la~~~~-----~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~--~~~ 110 (355)
T TIGR03301 38 DRLLALAG-----GDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTDLNFSE--YEP 110 (355)
T ss_pred HHHHHHhc-----CCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHcCCceEEEecCC--CCC
Confidence 77777776 433 368889999999999999998888887766655544 4567788999999998863 456
Q ss_pred cCHHHHHhhccC--CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 97 LDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 97 ~d~~~l~~~l~~--~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
+|++++++.+++ +.+++++++++|++|...| +++|+++|+++ ++++|+|++++.. ..+.++.. ++.
T Consensus 111 ~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~-~~~livD~~~s~g----~~~~~~~~----~~~ 178 (355)
T TIGR03301 111 PDLNRIEEALAADPDITHVATVHHETTTGILNP---LEAIAKVARSH-GAVLIVDAMSSFG----AIPIDIEE----LDV 178 (355)
T ss_pred CCHHHHHHHHHhCCCceEEEEEecCCcccchhH---HHHHHHHHHHc-CCEEEEEeccccC----Ccccchhh----cCc
Confidence 899999999864 4567778889999999999 89999999999 9999999987642 21222222 345
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhhh-----------------hccccCCChHHHHHHHHHhcccCCChHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-----------------SQFTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
+++++|++|+++ ++.++|++++++++++.+.... ....++++...+.++.++++.-.. ...
T Consensus 179 d~~~~s~~K~l~-~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~-~g~ 256 (355)
T TIGR03301 179 DALIASANKCLE-GVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEA-EGG 256 (355)
T ss_pred cEEEecCCcccc-cCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHH-ccc
Confidence 688999999874 3345799999999988765210 112345777777777777764110 123
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCceecCC---CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC
Q 018665 238 VSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~ 314 (352)
+++..++++++++++.+.|+++ |+++..+ .++.++++.+|+... .+..++.++|.++ ||.+.++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~-gi~i~~~~~ 325 (355)
T TIGR03301 257 VPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDPD---------FDFDDFYQELKER-GFVIYPGKL 325 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCCc---------chHHHHHHHHHHC-CEEEECCcc
Confidence 6778888999999999999887 7776533 245567788775210 1456888998876 999999865
Q ss_pred CCCCCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 315 FGDDTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 315 ~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
+. .+++|+++.. +.++++++++.|++++
T Consensus 326 ~~-~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 326 TL-ADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred cc-ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 43 3799999865 8899999999998753
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=223.26 Aligned_cols=295 Identities=18% Similarity=0.151 Sum_probs=219.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc-----CC-CCEEEecCCCCCChHHH---HHhcCCeEEEecccC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC-----SP-GDEVIIPAPFWVSYPEM---ARIADATPVILPTRI 91 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-----~~-~~~vl~~~~~~~~~~~~---~~~~g~~v~~i~~~~ 91 (352)
+.++++....+. .++++|++|+|++++++.++.++. ++ +++|+++...|+++... ++..|.+++.++++.
T Consensus 46 ~a~~~~~~~~~~-~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~ 124 (382)
T TIGR03403 46 EALDKLYKGINA-RDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINE 124 (382)
T ss_pred HHHHHHHHHcCc-CCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCC
Confidence 777777653232 257899999999999999888752 44 46899998777766544 567899999999873
Q ss_pred CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
++.+|++++++.++++++++++++|+||||..+| +++|.++|+++ |+++++|++++. +..+..+..
T Consensus 125 --~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~-g~~~ivD~a~~~----g~~~~~~~~---- 190 (382)
T TIGR03403 125 --QGTITAEQVREAITEKTALVSVMWANNETGMIFP---IKEIGEICKER-GVLFHTDAVQAI----GKIPVDVQK---- 190 (382)
T ss_pred --CCCCCHHHHHHhcccCCeEEEEEcccCCCccccC---HHHHHHHHHHc-CCEEEEechhhc----CCCccCccc----
Confidence 3468999999999888999999999999999999 88999999999 999999999764 222222221
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHH--HHHH---hhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFV--AACN---KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 246 (352)
.+.++++.|++|.+|.+| +|+++.++... ..+. .......++++...+.++..+++. ..+.++...++++
T Consensus 191 ~~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~ 265 (382)
T TIGR03403 191 AGVDFLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRL---ANEYLDFEKSHVR 265 (382)
T ss_pred cCCCEEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHH---HHHhHHHHHHHHH
Confidence 234488999999877555 57776654321 1110 011123456888888888888865 2445777788899
Q ss_pred HHHHHHHHHhcccCCceecCCC---CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC------
Q 018665 247 ERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------ 317 (352)
Q Consensus 247 ~~~~~l~~~l~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~------ 317 (352)
++++++.+.|++++++.++.+. ...++.+.++.. ++.++.+.|.++ ||.+..|+.|..
T Consensus 266 ~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~L~~~-gI~v~~g~~c~~~~~~~~ 332 (382)
T TIGR03403 266 RLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV------------EGEAMLWDLNKA-GIAASTGSACASEDLEAN 332 (382)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC------------CHHHHHHhhccC-CEEEEchhccCCCCCCcC
Confidence 9999999999988899888653 133444555543 677888887655 999998766530
Q ss_pred -------------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 318 -------------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 318 -------------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+.+|+|++. +++|++++++.|++++++++.
T Consensus 333 ~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 333 PVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred HHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2579999998 999999999999999887653
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=219.59 Aligned_cols=283 Identities=18% Similarity=0.210 Sum_probs=209.7
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 100 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~ 100 (352)
+.++++++ . ++.++++++++++..++.+++++||.|++++|.|.++...++..|.+++.++. .|++
T Consensus 53 ~~la~~~~-----~--~~~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~ 118 (349)
T cd06454 53 EELAEFHG-----K--EAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDME 118 (349)
T ss_pred HHHHHHhC-----C--CCEEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHH
Confidence 88888875 2 34566667788888888888899999999999999998889999999988752 3677
Q ss_pred HHHhhccC-----CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCC-CCCCc
Q 018665 101 VLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWER 174 (352)
Q Consensus 101 ~l~~~l~~-----~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~-~~~~~ 174 (352)
++++.+++ +++++++++++||+|...| +++|+++|+++ |+++|+|++++...+... ...+.... ...+.
T Consensus 119 ~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~-~~~livD~a~~~g~~~~~-~~~~~~~~~~~~~~ 193 (349)
T cd06454 119 DLEKLLREARRPYGKKLIVTEGVYSMDGDIAP---LPELVDLAKKY-GAILFVDEAHSVGVYGPH-GRGVEEFGGLTDDV 193 (349)
T ss_pred HHHHHHHHhhccCCCeEEEEeccccCCCCccC---HHHHHHHHHHc-CCEEEEEccccccccCCC-CCChhhhccccccC
Confidence 77777753 4677888899999999999 89999999999 999999999874222111 11111111 12467
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhhhhcc--ccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
+++++|++|.+|.+| |+++.++++++.+......+ +.+.++..+.++.++++.. .+ .+..+++++++++.+
T Consensus 194 ~i~~~s~sK~~~~~g---G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~~~~~~~~~~~~~~l 266 (349)
T cd06454 194 DIIMGTLGKAFGAVG---GYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVL---QG-GPERRERLQENVRYL 266 (349)
T ss_pred cEEEeechhhhcccC---CEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHH
Confidence 799999999998544 89999999888876543322 2356677777777777641 22 456778889999999
Q ss_pred HHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC---CCCeEEEEeec--
Q 018665 253 VKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAA-- 327 (352)
Q Consensus 253 ~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~---~~~~iRi~~~~-- 327 (352)
.+.|+++ |+.+..+..+++.++.+++.. ++.++.+.|.++ ||.+.++.... ..+++|++++.
T Consensus 267 ~~~l~~~-g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi~~~~~~ 333 (349)
T cd06454 267 RRGLKEL-GFPVGGSPSHIIPPLIGDDPA-----------KAVAFSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAH 333 (349)
T ss_pred HHHHHhc-CCcccCCCCCcEEEEeCCChH-----------HHHHHHHHHHhC-CceEEEecCCccCCCCCeEEEEEeCCC
Confidence 9999887 777765555554444444211 578899999977 99998754221 14789999986
Q ss_pred CHHHHHHHHHHHHHH
Q 018665 328 SLTTLQAAVERIKKG 342 (352)
Q Consensus 328 ~~~~l~~~~~~l~~~ 342 (352)
+++++++++++|+++
T Consensus 334 ~~~~i~~~~~~l~~~ 348 (349)
T cd06454 334 TKEDIDRLLEALKEV 348 (349)
T ss_pred CHHHHHHHHHHHHHh
Confidence 899999999999875
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=220.95 Aligned_cols=291 Identities=16% Similarity=0.209 Sum_probs=208.1
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC-hHH-HHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS-YPE-MARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~-~~~-~~~~ 79 (352)
..|+|++...+++ +++|++++ .+.+.+++|+++++...+.+++++||+|+++.|.|.. +.. ....
T Consensus 28 ~~Y~~~~~~~~L~------~~la~~~g-------~~~~~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~ 94 (333)
T PRK10534 28 DVYGDDPTVNALQ------DYAAELSG-------KEAALFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYEAGGAAV 94 (333)
T ss_pred cccCCCHHHHHHH------HHHHHHhC-------CCeEEEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhcCCchHH
Confidence 3588889999999 99999986 3445688888888888888888999999998887753 321 1233
Q ss_pred cC-CeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 80 AD-ATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 80 ~g-~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
.+ .+++.++.+ .++.+|+++|++++++ ++++|++++|+ +|.++|.+++++|+++|+++ ++++++||+|
T Consensus 95 ~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~-~~~lvvDEA~ 169 (333)
T PRK10534 95 LGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRER-NLALHVDGAR 169 (333)
T ss_pred hcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHc-CCeEEeeHHH
Confidence 33 677777664 4577899999999865 57899999776 49999999999999999999 9999999997
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeE-EEEcChhHHHHHHhhhhccccCC--ChHHHHHHHHHhc
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVAACNKIQSQFTSGA--SSISQKAGVAALG 229 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g-~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 229 (352)
....... ...+...+.. +.+ .++.|+||.+|++ +| |+++++++++.+......+..+. +.+.+.++.++++
T Consensus 170 ~~~~~~~-~~~~~~~~~~-~~~-~~~~s~SK~~~~~---~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~ 243 (333)
T PRK10534 170 IFNAVVA-YGCELKEITQ-YCD-SFTICLSKGLGTP---VGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALK 243 (333)
T ss_pred HHHHHHH-cCCCHHHHHh-cCC-EEEEEeEcCCCCc---ccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 6321100 0111111111 112 2334899988743 67 68889999999987765543222 3344555555553
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 230 LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
. . .+..++.++.++++.+.|+++ |+.+..+ .++|+++++++. +..++.+.|.++ ||.+
T Consensus 244 ~------~-~~~~~~~~~~r~~l~~~L~~~-g~~~~~~-~~nfv~~~~~~~------------~~~~~~~~l~~~-gi~v 301 (333)
T PRK10534 244 H------N-VARLQEDHDNAAWLAEQLREA-GADVMRQ-DTNMLFVRVGEE------------QAAALGEYMRER-NVLI 301 (333)
T ss_pred h------h-HHHHHHHHHHHHHHHHHHHhC-CCccCCC-CceEEEEECCch------------hHHHHHHHHHHc-Ceee
Confidence 2 1 223333455678899999988 8887765 588899988642 567787777765 9999
Q ss_pred ccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHh
Q 018665 310 VPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 310 ~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~ 344 (352)
.++. ++|++.+. +.+++++++++|++++.
T Consensus 302 ~~~~------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 302 NASP------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred cCCc------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 8862 57887763 89999999999997764
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=221.68 Aligned_cols=283 Identities=17% Similarity=0.162 Sum_probs=207.2
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 100 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~ 100 (352)
+.++++++ .+ +.++++++++++..++..++++||.|+++.|.|..+...++..|.+++.++. .|++
T Consensus 91 ~~la~~~~------~~-~~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~ 156 (385)
T PRK05958 91 EELAEWFG------AE-RALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVD 156 (385)
T ss_pred HHHHHHhC------CC-cEEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHH
Confidence 66666653 23 4455556667777777888999999999999999999999999999888864 2778
Q ss_pred HHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC--CCCccccccCCCCCCce
Q 018665 101 VLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA--PATHTSFASLPGMWERT 175 (352)
Q Consensus 101 ~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~--~~~~~~~~~~~~~~~~~ 175 (352)
.+++.+++ .++++++.+++|++|...+ +++|+++|+++ |+++|+||+|+.+.+. +........+. ..+++
T Consensus 157 ~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~---l~~i~~ia~~~-~~~li~De~~~~g~~~~~g~~~~~~~~~~-~~~~~ 231 (385)
T PRK05958 157 ALEALLAKWRAGRALIVTESVFSMDGDLAP---LAELVALARRH-GAWLLVDEAHGTGVLGPQGRGLAAEAGLA-GEPDV 231 (385)
T ss_pred HHHHHHHhccCCCeEEEEEecccCCCCcCC---HHHHHHHHHHh-CCEEEEECcccccccCCCCCchHHhhCCC-CCCce
Confidence 88888864 3556666778999999988 99999999999 9999999999754332 22111111222 24678
Q ss_pred EEEeccccccccccceeEEEEcChhHHHHHHhhhhc--cccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
+++.|+||.+|.+| ||+++++++++.+...... ++.++++..+.++.++++.. +...++.+++.++++.+.
T Consensus 232 i~~~s~sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~----~~~~~~~~~~~~~~~~l~ 304 (385)
T PRK05958 232 ILVGTLGKALGSSG---AAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRIL----RREPERRERLAALIARLR 304 (385)
T ss_pred EEEEechhhcccCC---cEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHH
Confidence 99999999998655 8999999888877544322 23345666666666777641 111466788888999999
Q ss_pred HHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC---CCCeEEEEeec--C
Q 018665 254 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAA--S 328 (352)
Q Consensus 254 ~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~---~~~~iRi~~~~--~ 328 (352)
+.|+.. ++++..+.+ .++++.+++.. ++.++.+.|.++ ||.+.++..+. .++++|++++. +
T Consensus 305 ~~L~~~-~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~l~~~-gI~v~~~~~~~~~~~~~~lRis~~~~~~ 370 (385)
T PRK05958 305 AGLRAL-GFQLMDSQS-AIQPLIVGDNE-----------RALALAAALQEQ-GFWVGAIRPPTVPAGTSRLRITLTAAHT 370 (385)
T ss_pred HHHHHc-CCCcCCCCC-CEEEEEeCCHH-----------HHHHHHHHHHHC-CceEecccCCCCCCCCceEEEEecCCCC
Confidence 999887 677665544 45677776421 567899999865 99998754332 24689999985 8
Q ss_pred HHHHHHHHHHHHHHH
Q 018665 329 LTTLQAAVERIKKGL 343 (352)
Q Consensus 329 ~~~l~~~~~~l~~~~ 343 (352)
++++++++++|++++
T Consensus 371 ~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 371 EADIDRLLEALAEAL 385 (385)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998763
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-28 Score=220.87 Aligned_cols=295 Identities=17% Similarity=0.185 Sum_probs=211.1
Q ss_pred CChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHHHHhcCCeEEE
Q 018665 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVI 86 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~~~~g~~v~~ 86 (352)
...+++ +.+|++++ .+..+++++|++++..++..+.+ +++.|+.....|.+....++..|.++..
T Consensus 91 ~~~~Le------~~la~~~g-------~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~ 157 (402)
T TIGR01821 91 PHVELE------AELADLHG-------KESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFI 157 (402)
T ss_pred HHHHHH------HHHHHHhC-------CCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEE
Confidence 345566 88888875 34566677778999989888765 5666666666777777788888888766
Q ss_pred ecccCCCCcccCHHHHHhhcc---C-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 87 LPTRISENFLLDPKVLESKLT---E-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 87 i~~~~~~~~~~d~~~l~~~l~---~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
++.+ |++.+++.++ + ++++|++++|+||+|.+.| +++|.++|+++ |+++|+||+|+...+.....
T Consensus 158 ~~~~-------d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~---l~~i~~l~~~~-~~~livDea~~~G~~g~~g~ 226 (402)
T TIGR01821 158 FRHN-------DVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAP---IEEICDLADKY-GALTYLDEVHAVGLYGPRGG 226 (402)
T ss_pred ECCC-------CHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC---HHHHHHHHHHc-CCEEEEeCcccccccCCCCC
Confidence 6532 5566666654 2 5789999999999999999 99999999999 99999999998433322111
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhc--cccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
............+++++|+||++|+.| ||+++++++++.+...... ++.+.++..+.++.++++.. +....
T Consensus 227 g~~~~~~~~~~~div~~t~sKa~g~~G---G~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~----~~~~~ 299 (402)
T TIGR01821 227 GIAERDGLMHRIDIIEGTLAKAFGVVG---GYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL----KESQD 299 (402)
T ss_pred ccchhccCCCCCeEEEEechhhhccCC---ceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHh----hcCHH
Confidence 111111111123588899999998767 8999999999888754432 34567777888888888752 11244
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC---C
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---D 317 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~---~ 317 (352)
+.+...++++++.+.|+++ |+.+..+.+++ +.+.++... .+.++.+.|++++||.+.+..... .
T Consensus 300 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i-~~i~~~~~~-----------~a~~~~~~L~~~~Gi~v~~~~~p~~~~g 366 (402)
T TIGR01821 300 LRRAHQENVKRLKNLLEAL-GIPVIPNPSHI-VPVIIGDAA-----------LCKKVSDLLLNKHGIYVQPINYPTVPRG 366 (402)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeCCHH-----------HHHHHHHHHHhcCCEEEEeECCCCCCCC
Confidence 5556678888999999887 77776655554 555554310 456788888766799998754332 2
Q ss_pred CCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 318 DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 318 ~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
..++|++++. +++|++++++.|+++++++.
T Consensus 367 ~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~ 398 (402)
T TIGR01821 367 TERLRITPTPAHTDKMIDDLVEALLLVWDRLG 398 (402)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3689999976 89999999999999998753
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=217.76 Aligned_cols=293 Identities=16% Similarity=0.165 Sum_probs=217.0
Q ss_pred HHHHHHHHhcCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTP--DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~--~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ .++ +.|++++|++++++.++.++..++|.|+++.+++++.. ..++..|.+++.++.+. ++.
T Consensus 44 ~~l~~l~~-----~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~--~~~ 116 (368)
T PRK13479 44 AKLVAIAT-----GEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGE--DEP 116 (368)
T ss_pred HHHHHHhC-----CCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCC--CCC
Confidence 77777775 433 56889999999999999999999999999988887764 77889999999999863 345
Q ss_pred cCHHHHHhhccC--CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 97 LDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 97 ~d~~~l~~~l~~--~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
+|++++++.+++ +++++++++++||||...| +++|.++|+++ |+++|+|++++. +..+..+.. .+.
T Consensus 117 ~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~-~~~livDa~~~~----g~~~~~~~~----~~~ 184 (368)
T PRK13479 117 PDAAEVEAALAADPRITHVALVHCETTTGILNP---LDEIAAVAKRH-GKRLIVDAMSSF----GAIPIDIAE----LGI 184 (368)
T ss_pred CCHHHHHHHHHhCCCCcEEEEEcccCccccccC---HHHHHHHHHHc-CCEEEEEccccc----CCccccccc----cCc
Confidence 899999998864 4568889999999999999 88999999999 999999977643 222222222 233
Q ss_pred eEEEecccccc-ccccceeEEEEcChhHHHHHHhhhh-----------------ccccCCChHHHHHHHHHhcccCCChH
Q 018665 175 TLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQS-----------------QFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 175 ~i~~~s~sK~~-g~~g~~~g~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
.++++|++|++ |.+| +||+++++++++.+..... .+.++++...+.++.++++.-. ...
T Consensus 185 d~~v~s~~K~l~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~-~~~ 261 (368)
T PRK13479 185 DALISSANKCIEGVPG--FGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELE-EEG 261 (368)
T ss_pred eEEEecCccccccCCC--ceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHH-Hhh
Confidence 47888999987 4445 7999999998887654321 1123567677666666665411 123
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCCC---CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
.+++..++++++++.+.+.|+++ |+.+..+. ....+.+.++...+ .+..++.++|.++ ||.+.+|.
T Consensus 262 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~-gi~v~~g~ 330 (368)
T PRK13479 262 GVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADPA---------YDFKEFYERLKEQ-GFVIYPGK 330 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCCC---------cCHHHHHHHHHHC-CEEEecCC
Confidence 46777889999999999999988 77765331 22223333433200 1567899998876 99998875
Q ss_pred CCCCCCeEEEEe-ec-CHHHHHHHHHHHHHHHhhhC
Q 018665 314 AFGDDTCIRISY-AA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 314 ~~~~~~~iRi~~-~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
.+ ..+++|++. .. +++|++++++.|++++++++
T Consensus 331 ~~-~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 331 LT-QVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred CC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 43 356899986 44 99999999999999998653
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=217.80 Aligned_cols=302 Identities=14% Similarity=0.150 Sum_probs=217.7
Q ss_pred ChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecc
Q 018665 10 TLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~ 89 (352)
..+++ +.+|++++ .+++++++|+++++..++.+++++||+|+++.++|.+....++..|.+++.++.
T Consensus 65 ~~~l~------~~lA~~~g-------~~~~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~ 131 (387)
T PRK09331 65 IADFH------EDLAEFLG-------MDEARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPK 131 (387)
T ss_pred HHHHH------HHHHHHhC-------CCcEEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeC
Confidence 45666 99999986 356888999999999999999999999999999999988889999999999998
Q ss_pred cCCCCcccCHHHHHhhccC-------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 90 RISENFLLDPKVLESKLTE-------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 90 ~~~~~~~~d~~~l~~~l~~-------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+.+.++.+|++.+++.+++ ++++|++++|+|++|...| +++|+++|+++ |+++++|++|+. |..+
T Consensus 132 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~---l~~I~~la~~~-g~~livD~a~~~----g~~~ 203 (387)
T PRK09331 132 TGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD---AKKVAKVAHEY-GIPFLLNGAYTV----GRMP 203 (387)
T ss_pred ccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc---HHHHHHHHHHc-CCEEEEECCccc----CCcC
Confidence 4334566899999998863 6899999999999999999 99999999999 999999999975 2212
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcc--------ccCCChHHHHHHHHHhcccCCC
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--------TSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
..... .+.++++.|++|+++ ++.++|++++++++++.+.+....+ ..+.+.....++.++++. .
T Consensus 204 ~~~~~----~g~D~~~~s~~K~l~-~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~---~ 275 (387)
T PRK09331 204 VDGKK----LGADFIVGSGHKSMA-ASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPH---V 275 (387)
T ss_pred CCHHH----cCCCEEEeeCccccc-CCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHH---H
Confidence 22222 244589999999997 5568999999999888775532211 112222233334444432 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCceecC--CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSE--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
.+.. +..++..++.+++.+.|++++|++++. +....++.++.|.... ...+ ...++..+.+.|.++ ||...+.
T Consensus 276 ~~~~-~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~-~~~~--~~~~~~~~~~~L~~~-gI~~~~~ 350 (387)
T PRK09331 276 VERV-KRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDE-IAKK--HKRRGFFLYEELKKR-GIHGIKP 350 (387)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhH-Hhhh--ccccchhHHHHHHHc-CceEEcc
Confidence 2222 234455667778999999998998873 2334445566552110 0000 001456799998865 8974332
Q ss_pred CCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHhhhCC
Q 018665 313 DAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 313 ~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+....+|+.... ++++++++++.|++++++++-
T Consensus 351 ---~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~~~ 384 (387)
T PRK09331 351 ---GATKEFKLSTYGLTWEQVEYVADAFKEIAEKYGL 384 (387)
T ss_pred ---CCceEEEEEeccCCHHHHHHHHHHHHHHHHhcCC
Confidence 134567777644 999999999999999887543
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=219.89 Aligned_cols=298 Identities=18% Similarity=0.195 Sum_probs=210.9
Q ss_pred CCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHHHHhcCC
Q 018665 5 RVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
++++...+++ +.+|++++ . +..++.++|++++..++..+.+ +++.|+.....|.+....++..+.
T Consensus 88 g~~~~~~~l~------~~la~~~g------~-~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~ 154 (407)
T PRK09064 88 GTNHYHVELE------RELADLHG------K-EAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRC 154 (407)
T ss_pred cCHHHHHHHH------HHHHHHhC------C-CcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCC
Confidence 3445556677 99998875 3 3445556667788877877654 566566666667667677777888
Q ss_pred eEEEecccCCCCcccCHHHHHhhcc----CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 83 TPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~----~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
++..++. .|++.+++.++ +++++|++++++||+|.+.| +++|.++|+++ |+++|+||+|+...+.
T Consensus 155 ~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~---l~~i~~l~~~~-~~~livDEa~~~G~~g 223 (407)
T PRK09064 155 EKHIFRH-------NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAP---IAEICDLADKY-NALTYLDEVHAVGMYG 223 (407)
T ss_pred cEEEECC-------CCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccC---HHHHHHHHHHc-CCEEEEECCCcccccC
Confidence 7766653 26677777664 46789999999999999999 99999999999 9999999999832222
Q ss_pred CCCccccccCCC-CCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcc--ccCCChHHHHHHHHHhcccCCCh
Q 018665 159 PATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 159 ~~~~~~~~~~~~-~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
... ..+..... ....+++++|+||.+|+.| ||+++++++++.+......+ +.+.++..+.++.++++. .
T Consensus 224 ~~g-~g~~~~~~~~~~~div~~t~sKa~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~----~ 295 (407)
T PRK09064 224 PRG-GGIAERDGLMDRIDIIEGTLAKAFGVMG---GYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRH----L 295 (407)
T ss_pred CCC-CChHHhcCCCCCCeEEEEecchhhhccC---ceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHH----H
Confidence 211 11111111 1133688999999998766 99999999988887654332 445667777777777764 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
+.....+++++++++++.+.|+++ |++++.+.+ .++.+.++... .+.++.++|+++.||.+.+....
T Consensus 296 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~iv~i~~~~~~-----------~~~~l~~~L~~~~gi~v~~~~~p 362 (407)
T PRK09064 296 KESNEERERHQERAAKLKAALDAA-GIPVMPNES-HIVPVMVGDPE-----------KCKKASDMLLEEHGIYVQPINYP 362 (407)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCC-CEEEEEeCCHH-----------HHHHHHHHHHHhCCEEEeeECCC
Confidence 222344677888999999999987 777765444 44566654321 46789888876669999875433
Q ss_pred CC---CCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 316 GD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 316 ~~---~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
.. ..++|++++. +++|++++++.|+++++++.
T Consensus 363 ~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~~ 399 (407)
T PRK09064 363 TVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARLG 399 (407)
T ss_pred CCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 22 2679999986 88999999999999988764
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-28 Score=219.32 Aligned_cols=287 Identities=14% Similarity=0.147 Sum_probs=215.5
Q ss_pred HHHHHHHHhcCCCCC-CCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCCeEEEecccCCCCc
Q 018665 21 QQFVINLKENGLSYT-PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENF 95 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~~v~~i~~~~~~~~ 95 (352)
+.++++++ .. .++|++++|+++++..++.+++++||+|+++.+.|.++.. .++..|.+++.++.+. ++
T Consensus 51 ~~la~~~~-----~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~ 123 (376)
T TIGR01977 51 QLLAKLFN-----APSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN--EG 123 (376)
T ss_pred HHHHHHhC-----cCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CC
Confidence 88888886 43 3589999999999999999998999999999999987653 4455699999998863 45
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
.+|++++++.++++++++++++|+||||.++| +++|.++|+++ |+++|+|++++... .+..+.. .+.+
T Consensus 124 ~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~---~~~i~~l~~~~-~~~livD~a~~~g~----~~~~~~~----~~~D 191 (376)
T TIGR01977 124 LISPERIKRAIKTNTKLIVVSHASNVTGTILP---IEEIGELAQEN-GIFFILDAAQTAGV----IPIDMTE----LAID 191 (376)
T ss_pred CcCHHHHHHhcCCCCeEEEEECCCCCccccCC---HHHHHHHHHHc-CCEEEEEhhhccCc----cCCCchh----cCCC
Confidence 68999999999889999999999999999999 88899999999 99999999997522 1122211 3455
Q ss_pred EEEeccccccccccceeEEEEcChhH-HHHHHhh----------------hhccccCCChHHHHHHHHHhcccCCChHHH
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNKI----------------QSQFTSGASSISQKAGVAALGLGYAGGEVV 238 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~~-~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (352)
+++.|.+|+++.+ .+.|+++.+++. +..+... .+....+++.....++.++++.- .....
T Consensus 192 ~~~~s~~K~l~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~--~~~g~ 268 (376)
T TIGR01977 192 MLAFTGHKGLLGP-QGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFI--EKIGI 268 (376)
T ss_pred EEEecccccccCC-CCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHH--HHhCH
Confidence 8999999998533 246766655443 1111100 01122346666666666666541 13345
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCceecCCC----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC
Q 018665 239 SKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~ 314 (352)
+.+.++.+++.+.+.+.|++.++++++.+. .+..+++.+++. +..++.+.|.+++||.+..|..
T Consensus 269 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~~~L~~~~gi~v~~g~~ 336 (376)
T TIGR01977 269 ANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI------------DSEEVADILDEKFDIATRTGLH 336 (376)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC------------CHHHHHHHHhccCCEEEEcccc
Confidence 677888889999999999988888877531 244566676643 7788999988777999988765
Q ss_pred CC----------CCCeEEEEeec--CHHHHHHHHHHHHH
Q 018665 315 FG----------DDTCIRISYAA--SLTTLQAAVERIKK 341 (352)
Q Consensus 315 ~~----------~~~~iRi~~~~--~~~~l~~~~~~l~~ 341 (352)
+. .++.+|++++. +++|++++++.|++
T Consensus 337 ~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 337 CAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred cchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 53 34789999988 99999999999976
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=216.67 Aligned_cols=295 Identities=17% Similarity=0.137 Sum_probs=211.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH---HHHh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE---MARI 79 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~---~~~~ 79 (352)
.|++++...+++ +.++++++ ++++++++|+++++..++.+++++||+|+++.|+|..+.. ....
T Consensus 27 ~~~~~~~~~~l~------~~~a~~~g-------~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~~~~~~ 93 (338)
T cd06502 27 VYGEDPTTAKLE------ARAAELFG-------KEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFL 93 (338)
T ss_pred ccCCCHHHHHHH------HHHHHHhC-------CCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCCcHHHH
Confidence 356666777888 88888874 5678888888999999999999999999999999876543 3455
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccC-------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTE-------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~-------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
.|.+++.++.+ . +.+|++++++++++ ++++|++++|+|| |..++.+++++|+++|+++ |+++|+|++|
T Consensus 94 ~g~~~~~v~~~--~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~-~~~livDea~ 168 (338)
T cd06502 94 SGVKLLPVPGE--N-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKEN-GLPLHLDGAR 168 (338)
T ss_pred cCceEEeecCC--C-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHc-CCeEeechHH
Confidence 89999999874 2 46899999999864 6889999999997 6666989999999999999 9999999998
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcc--ccCCChHHHHHHHHHhcc
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--TSGASSISQKAGVAALGL 230 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~ 230 (352)
..+...... .++..... +..+++.|+||++|++| .+++++++++++.+......+ +.+.+.+.+.++..+++.
T Consensus 169 ~~~~~~~~~-~~~~~~~~--~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~ 243 (338)
T cd06502 169 LANAAAALG-VALKTYKS--GVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALEN 243 (338)
T ss_pred HHHHHHhcC-CCHHHHHh--cCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcC
Confidence 643211111 12222211 22366889999998776 335568899988887654332 334566777777777764
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHH--ccCEE
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD--KAQVA 308 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~gi~ 308 (352)
.. ..+..+++.++++++.+.|+++ ++.+..+..++ +.+..+... ....++.+++.+ +.|+.
T Consensus 244 ----~~-~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~-~~v~~~~~~----------~~~~~l~~~l~~~~~~gi~ 306 (338)
T cd06502 244 ----DL-WLRRLRHDHEMARRLAEALEEL-GGLESEVQTNI-VLLDPVEAN----------AVFVELSKEAIERRGEGVL 306 (338)
T ss_pred ----ch-HHHHHHHHHHHHHHHHHHHHhc-CCCcccccCCe-EEEecCCcc----------HHHHHHHHHHHHhhhCCEE
Confidence 22 3345567777888999999987 55555545454 555554210 022344444431 34888
Q ss_pred eccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHH
Q 018665 309 LVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 341 (352)
Q Consensus 309 i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~ 341 (352)
+.+.. .+++|++++. +++|++++++.+++
T Consensus 307 ~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 307 FYAWG----EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred EEecC----CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 87642 3899999986 88999999998865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=221.63 Aligned_cols=275 Identities=14% Similarity=0.075 Sum_probs=205.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCC-CEEEecCCCCCChHHHHH-hcCC------------eEEEecccCCCCcccCHHH
Q 018665 36 PDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMAR-IADA------------TPVILPTRISENFLLDPKV 101 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~~~-~~vl~~~~~~~~~~~~~~-~~g~------------~v~~i~~~~~~~~~~d~~~ 101 (352)
.+++++++|+++++..+++.+...| +.|+..+++|+++..... ..|. ++..+|. .|++.
T Consensus 103 ~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~ 175 (398)
T PRK03244 103 GGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDA 175 (398)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHH
Confidence 4799999999999999998765444 577777788887754333 2221 2222221 27899
Q ss_pred HHhhccCCeeEEEEcCCCCCcccCCCHH-HHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEec
Q 018665 102 LESKLTEKSRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 180 (352)
Q Consensus 102 l~~~l~~~~~~i~i~~p~nptG~~~~~~-~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 180 (352)
+++.+++++++|+++.++||+|..+|.+ .+++|.++|++| |+++|+||++.++.+.|... .+..... .++ +.+
T Consensus 176 l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~g~~~-~~~~~~~-~pD---i~t 249 (398)
T PRK03244 176 LAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRH-GALLVLDEVQTGIGRTGAWF-AHQHDGV-TPD---VVT 249 (398)
T ss_pred HHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCcccchHH-hhhhhCC-CCC---EEE
Confidence 9998877889999999999999988665 599999999999 99999999999877665421 1111111 122 458
Q ss_pred cccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccC
Q 018665 181 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 260 (352)
Q Consensus 181 ~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 260 (352)
+||.+| +|+|+|++++++++++.+.......+++.|++.+.++.++++.. + -++..++++++.+++.+.|+++
T Consensus 250 ~sK~l~-~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~----~-~~~~~~~~~~~~~~l~~~L~~~- 322 (398)
T PRK03244 250 LAKGLG-GGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTI----A-SEGLLENAERLGEQLRAGIEAL- 322 (398)
T ss_pred Echhhh-CCcccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHH----H-hccHHHHHHHHHHHHHHHHHhc-
Confidence 899999 89999999999999888766555567789999999999998741 1 1244566777778888888875
Q ss_pred Cceec--CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHH
Q 018665 261 GVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAV 336 (352)
Q Consensus 261 g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~ 336 (352)
+.... ....|.++++.++.. .+.++.+.|.++ |+.+.+. .++++|++++. +++|+++++
T Consensus 323 ~~~~~~~v~g~g~~~~i~~~~~------------~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~p~~~~t~~~i~~~~ 385 (398)
T PRK03244 323 GHPLVDHVRGRGLLLGIVLTAP------------VAKAVEAAAREA-GFLVNAV----APDVIRLAPPLIITDAQVDAFV 385 (398)
T ss_pred CCCceeeEeeccEEEEEEEecc------------HHHHHHHHHHHC-CeEEeec----CCCEEEEECCCcCCHHHHHHHH
Confidence 32211 223678889988642 567888888876 9999874 25789999886 889999999
Q ss_pred HHHHHHHhhhC
Q 018665 337 ERIKKGLLTLR 347 (352)
Q Consensus 337 ~~l~~~~~~~~ 347 (352)
++|+++++++.
T Consensus 386 ~~l~~~l~~~~ 396 (398)
T PRK03244 386 AALPAILDAAA 396 (398)
T ss_pred HHHHHHHHhcc
Confidence 99999998654
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-28 Score=194.49 Aligned_cols=287 Identities=24% Similarity=0.302 Sum_probs=229.4
Q ss_pred CCCCCcEEEeCChHHHHHHHHHHhcCCC-CEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccC--C
Q 018665 33 SYTPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE--K 109 (352)
Q Consensus 33 ~~~~~~i~~~~g~~~a~~~~~~~l~~~~-~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~--~ 109 (352)
++.+++|.+..|+.+.+..++++.+.+| ++|++..|+|..|.--+.-.+++|+.+|+.+ ++.++.|.+.+.++. .
T Consensus 83 pLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~p--dF~lnvdai~evl~~ds~ 160 (375)
T KOG0633|consen 83 PLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNP--DFSLNVDAIAEVLELDSK 160 (375)
T ss_pred CCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCC--CccccHHHHHHHHhcccc
Confidence 4678999999999999999999999998 8999999999999988899999999999975 677999999998863 6
Q ss_pred eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEecccccccccc
Q 018665 110 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 189 (352)
Q Consensus 110 ~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g 189 (352)
++.+++++|+||||.....+.+.+|.+.- . |.++++||+|-+|.-.+ |-..+...++|++++.++||.+|++|
T Consensus 161 iK~~F~tSPgNPtg~~ik~~di~KiLe~p--~-nglVVvDEAYidFsg~~----S~~~lV~kYpNLivlqTlSKsfGLAG 233 (375)
T KOG0633|consen 161 IKCIFLTSPGNPTGSIIKEDDILKILEMP--D-NGLVVVDEAYIDFSGVE----SRMKLVKKYPNLIVLQTLSKSFGLAG 233 (375)
T ss_pred ceEEEEcCCCCCCcccccHHHHHHHHhCC--C-CcEEEEeeeeEeecccc----ccchHhHhCCceeehhhhhhhcCcce
Confidence 89999999999999999977777776522 2 78999999999876433 33444455889999999999999999
Q ss_pred ceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCcee-cCCC
Q 018665 190 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQ 268 (352)
Q Consensus 190 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~~ 268 (352)
+|+|+-..+.++++-+.+....++ .|..+..++.++++... ...++..++.+.+.+.++...|.++|++.- ..+.
T Consensus 234 iRvG~~~~~~~ia~iln~~KaPYN--iS~~~s~~AL~Als~~n--~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~ 309 (375)
T KOG0633|consen 234 IRVGYGAFPLSIAEILNRAKAPYN--ISVAGSVAALAALSDSN--GKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGS 309 (375)
T ss_pred eEeecccccHHHHHHHHhccCCcc--ccchhHHHHHHhcCccc--chHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcc
Confidence 999999999999998888776655 77777888888888643 467888888999999999999999877653 3456
Q ss_pred CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC-CCCCCCeEEEEeecCHHHHHHHHHHHHHH
Q 018665 269 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD-AFGDDTCIRISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 269 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~-~~~~~~~iRi~~~~~~~~l~~~~~~l~~~ 342 (352)
...|++++..+..+ ..+..+..+++.+.|+.++--+ --++.+++||+.+.+|| -.-+++.|+.+
T Consensus 310 daNFiLi~v~~~~n---------~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvGt~Ee-ntvL~k~~K~~ 374 (375)
T KOG0633|consen 310 DANFILIEVTGGDN---------GMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVGTPEE-NTVLMKCLKQF 374 (375)
T ss_pred cccEEEEEEcCCCc---------HHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcCCccc-chHHHHHHHhh
Confidence 67778888765311 0345566666667799886533 23467899999998643 35556666554
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=214.34 Aligned_cols=223 Identities=13% Similarity=0.197 Sum_probs=175.3
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIAD 81 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g 81 (352)
+++....++ +.+|++.+ .+++++++|+++++..++.+++++||+|+++.|+|..+...+ +..|
T Consensus 81 ~~Pt~~~Le------~~lA~leg-------~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~G 147 (427)
T PRK07049 81 NHPNSEIVE------DRLAVYEG-------AESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFG 147 (427)
T ss_pred CCcCHHHHH------HHHHHHhC-------CCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcC
Confidence 455566777 99999974 567899999999999999999999999999999999997654 5679
Q ss_pred CeEEEecccCCCCcccCHHHHHhhcc-----CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh---CCCEEEEeccccc
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLT-----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK---HPRLLVLSDEIYE 153 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~-----~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~---~~~~~livD~~~~ 153 (352)
++++.++. . .|++.+++.+. +++++|++++|+||||.+++.+++.+|++.|.. + ++++|+|+++.
T Consensus 148 i~~v~~~~---~---~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~-~~~vvvDety~ 220 (427)
T PRK07049 148 VGAVGFAD---G---LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGH-RPIIACDNTLL 220 (427)
T ss_pred cEEEEEeC---C---CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccC-CCEEEEECCcc
Confidence 88777752 1 35666766553 478999999999999999997777777776543 7 89999999976
Q ss_pred ccccCCCCccccccCCCCCCceEEEeccccccc-cccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccC
Q 018665 154 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
.... ..++ ..+.++++.|+||.+| .+|+|+||+++++++++.+......++.+.+++.+.++...++.
T Consensus 221 ~~~~----~~pl-----~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~t-- 289 (427)
T PRK07049 221 GPVF----QKPL-----EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLET-- 289 (427)
T ss_pred cccc----CCcc-----ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCh--
Confidence 4321 1121 1345699999999997 68999999999999999998877777777899888887777653
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCcee
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 264 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 264 (352)
+..+.++..+++..+.+.|++.|++..
T Consensus 290 -----l~~R~~~~~~~a~~la~~L~~~p~V~~ 316 (427)
T PRK07049 290 -----LVLRMERANRNARAVAEFLRDHPKVEK 316 (427)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 444456668889999999998877543
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=217.04 Aligned_cols=288 Identities=17% Similarity=0.190 Sum_probs=213.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEecCCCCCChHHHH---HhcCCeEEEecccCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISE 93 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~~~~vl~~~~~~~~~~~~~---~~~g~~v~~i~~~~~~ 93 (352)
+.++++++ .++++|++++|+|++++.++.++. +++++|+++.+.|.++...+ +..|.+++.++++ .
T Consensus 54 ~~la~~~g-----~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~ 126 (402)
T TIGR02006 54 NQVAELIG-----ADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPK--S 126 (402)
T ss_pred HHHHHHhC-----CCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccC--C
Confidence 88888876 677899999999999998887653 67899999999998876554 4569999999886 3
Q ss_pred CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 94 ~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
++.+|++.+++.++++++++++++++||||...| +++|.++|+++ |+++++|++++. +..+..+.. .+
T Consensus 127 ~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~---~~~I~~l~~~~-g~~livD~a~a~----g~~~~~~~~----~~ 194 (402)
T TIGR02006 127 NGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQD---IAAIGEICRER-KVFFHVDAAQSV----GKIPINVNE----LK 194 (402)
T ss_pred CCcCCHHHHHHhcCCCCEEEEEECCCcCceeccc---HHHHHHHHHHc-CCEEEEEcchhc----CCcccCccc----cC
Confidence 4458999999999888999999999999999999 89999999999 999999999975 222222222 24
Q ss_pred ceEEEeccccccccccceeEEEEcChhHHHHHHhh-------hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 246 (352)
.++++.|.+|.+|.+| +|+++.+++....+... ......+++.....++.++++. ..++++...++.+
T Consensus 195 ~D~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~ 269 (402)
T TIGR02006 195 VDLMSISGHKIYGPKG--IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRI---AKEEMAQDTAHVL 269 (402)
T ss_pred CCEEEEehhhhcCCCc--eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHH
Confidence 4588999999876334 78888776543322211 1123345777777777777765 2446777788899
Q ss_pred HHHHHHHHHhcccCCceecCCC---CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC------
Q 018665 247 ERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------ 317 (352)
Q Consensus 247 ~~~~~l~~~l~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~------ 317 (352)
++++++.+.|++++++.+..+. ....+.+.++.. ..+.+...| + ++.+..|..|..
T Consensus 270 ~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~------------~~~~~~~~l--~-~i~v~~G~~c~~~~~~~~ 334 (402)
T TIGR02006 270 ALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYV------------EGESLIMAL--K-DLAVSSGSACTSASLEPS 334 (402)
T ss_pred HHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCc------------CHHHHHHhc--C-CEEEechhhcCCCCCCcc
Confidence 9999999999988887765321 111112223321 455665544 2 788877766643
Q ss_pred -------------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 318 -------------DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 318 -------------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
.+++|+|++. +++|++++++.|+++++.++
T Consensus 335 ~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~ 379 (402)
T TIGR02006 335 YVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLR 379 (402)
T ss_pred HHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2689999998 89999999999999987763
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=215.81 Aligned_cols=277 Identities=14% Similarity=0.166 Sum_probs=200.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhc---C----CCCEEEecCCCCCChHHHHHhcCCeEEE----ecccCCCCcc--cCHHHH
Q 018665 36 PDQILVSNGAKQSILQAVLAVC---S----PGDEVIIPAPFWVSYPEMARIADATPVI----LPTRISENFL--LDPKVL 102 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~---~----~~~~vl~~~~~~~~~~~~~~~~g~~v~~----i~~~~~~~~~--~d~~~l 102 (352)
.+++++++|+++++..+++.+. . ++++|++++|+|+.+...+...+..... .++..+..+. .|++.+
T Consensus 84 ~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 163 (379)
T TIGR00707 84 ADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESL 163 (379)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHH
Confidence 3599999999999998888652 2 3689999999998887666554433211 2222111111 189999
Q ss_pred HhhccCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEecc
Q 018665 103 ESKLTEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 181 (352)
Q Consensus 103 ~~~l~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 181 (352)
++.+++++++|+++.++|++|.. ++.+++++|.++|+++ |+++|+||+|.++.+.+.. .++..... .++ +.++
T Consensus 164 ~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~-~~~~i~De~~~~~~~~g~~-~~~~~~~~-~~d---~~t~ 237 (379)
T TIGR00707 164 KKAIDDETAAVIVEPIQGEGGVNPASAEFLKALREICKDK-DALLIFDEVQTGIGRTGKF-FAYEHYGI-EPD---IITL 237 (379)
T ss_pred HHHhhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchh-hhHHhcCC-CCC---EEEE
Confidence 99998888998887667788864 6889999999999999 9999999999987665431 22111111 122 3368
Q ss_pred ccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc--
Q 018665 182 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-- 259 (352)
Q Consensus 182 sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 259 (352)
||.++ +|+|+||+++++++++.+........++.+++.+.++.++++. .+ ..+..++++++++.+.+.|+++
T Consensus 238 sK~~~-~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~----~~-~~~~~~~~~~~~~~~~~~l~~~~~ 311 (379)
T TIGR00707 238 AKGLG-GGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEV----IE-KERLLENVKEKGDYFKERLEELGK 311 (379)
T ss_pred ccccc-CCcccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHH----HH-hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999999999887654445667899999999988874 11 1245566666777777766653
Q ss_pred -CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHH
Q 018665 260 -EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAV 336 (352)
Q Consensus 260 -~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~ 336 (352)
.++... +..|.++++.++. +..++.+.|.++ ||.+.|+. .+++|++++. +++++++++
T Consensus 312 ~~~~~~~-~~~g~~~~~~~~~-------------~~~~~~~~l~~~-Gv~v~~~~----~~~lRi~~~~~~t~~~i~~~~ 372 (379)
T TIGR00707 312 NYPNKEV-RGKGLMLGIELEA-------------PCKDIVKKALEK-GLLVNCAG----PKVLRFLPPLIITKEEIDEAV 372 (379)
T ss_pred hCCCCcc-ccCceEEEEEecC-------------cHHHHHHHHHHC-CcEEeeCC----CCEEEEECCCcCCHHHHHHHH
Confidence 122111 2357778888764 567888888865 99998853 5799999864 899999999
Q ss_pred HHHHHHH
Q 018665 337 ERIKKGL 343 (352)
Q Consensus 337 ~~l~~~~ 343 (352)
++|++++
T Consensus 373 ~~l~~~~ 379 (379)
T TIGR00707 373 SALEEAI 379 (379)
T ss_pred HHHHHhC
Confidence 9998763
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-28 Score=217.11 Aligned_cols=293 Identities=17% Similarity=0.160 Sum_probs=215.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC------------C--CCEEEecC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS------------P--GDEVIIPA 67 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~------------~--~~~vl~~~ 67 (352)
.|...++..+++ +.+++++. ..|.+.+.+++++|+|+|+++..++.++.. + ++.|+++.
T Consensus 29 ~y~~~~~~~~le------~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 102 (345)
T cd06450 29 TWDESPAATEME------AEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSD 102 (345)
T ss_pred ccccCchhHHHH------HHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcC
Confidence 477778888888 99999988 667654556899999999999999988642 2 34788889
Q ss_pred CCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 018665 68 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 141 (352)
Q Consensus 68 ~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~ 141 (352)
++|.++...++..|.+++.++++++ +.+|++.|++++++ +++++++++++||+|.+.+ +++|+++|+++
T Consensus 103 ~~h~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~ 177 (345)
T cd06450 103 QAHVSVEKAAAYLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKY 177 (345)
T ss_pred cchhHHHHHHHHHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHh
Confidence 9999999999989999999998743 36899999999976 7788889999999999988 99999999999
Q ss_pred CCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHH
Q 018665 142 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQ 221 (352)
Q Consensus 142 ~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
|+++++|++|+.+.......... .....+-+.+..|++|+++ ++.++|+++.+ ...+
T Consensus 178 -~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~l~-~p~g~g~~~~~-------------------~~~~ 234 (345)
T cd06450 178 -DLWLHVDAAYGGFLLPFPEPRHL--DFGIERVDSISVDPHKYGL-VPLGCSAVLVR-------------------ALKL 234 (345)
T ss_pred -CCeEEEechhhHHHhhChhhHHH--hcCccccCEEEEchhHhhC-CCcchHHHHHH-------------------HHHH
Confidence 99999999998765321111111 0011123467789999876 66688887544 3333
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHH
Q 018665 222 KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 301 (352)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 301 (352)
.++...+. ...+++..++..++++++.+.|++++++.+..+..+.++.+.++.... .+ .+..++.+.|
T Consensus 235 ~~~l~~l~-----~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~---~~----~~~~~i~~~L 302 (345)
T cd06450 235 WATLRRFG-----RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVK---LD----ELNYDLSDRL 302 (345)
T ss_pred HHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcch---hh----HHHHHHHHHH
Confidence 44444443 466788888999999999999999888877654334445555543100 00 0567899998
Q ss_pred HHccCEEeccCCCCCCCCeEEEEeec---CHHHHHHHHHHHHHH
Q 018665 302 LDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKG 342 (352)
Q Consensus 302 ~~~~gi~i~~g~~~~~~~~iRi~~~~---~~~~l~~~~~~l~~~ 342 (352)
.++ |+.+.++..+..+.++|++++. +.+|++++++.|+++
T Consensus 303 ~~~-g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~~ 345 (345)
T cd06450 303 NER-GGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIERA 345 (345)
T ss_pred Hhc-CCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHhC
Confidence 876 4444444434346799999974 779999999999763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=213.45 Aligned_cols=288 Identities=19% Similarity=0.194 Sum_probs=207.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 98 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d 98 (352)
+.+|++++ .+..++.++|++++..++..+.+ +++.|+.....|.++...++..|.++..++.. |
T Consensus 97 ~~la~~~g-------~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~~-------d 162 (406)
T PRK13393 97 AELADLHG-------KEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRHN-------D 162 (406)
T ss_pred HHHHHHhC-------CCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCCC-------C
Confidence 88888874 35666666777899989987765 67777777788888888888888888777632 5
Q ss_pred HHHHHhhcc----CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 99 PKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 99 ~~~l~~~l~----~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
++.+++.++ +++++|++++++|++|.+.| +++|.++|+++ |+++|+||+|+...+.................
T Consensus 163 ~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~---l~~i~~l~~~~-~~~livDea~~~g~~g~~G~g~~~~~~~~~~~ 238 (406)
T PRK13393 163 PADLERKLSDLDPHRPKLVAFESVYSMDGDIAP---IAEICDVAEKH-GAMTYLDEVHAVGLYGPRGGGIAEREGLADRL 238 (406)
T ss_pred HHHHHHHHHhccCCCCEEEEEcCCCCCCCchhC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCchhhhcCCCCCC
Confidence 666666553 35678899999999999999 99999999999 99999999998433322211111111111223
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhhhhc--cccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
+++++|+||.+|+.| ||+++++++++.+...... ++.+.++..+.++.++++.. .+. ...+.++.++.+++
T Consensus 239 ~i~~~tlsKa~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~---~~~-~~~~~~~~~~~~~l 311 (406)
T PRK13393 239 TIIEGTLAKAFGVMG---GYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHL---KAS-SAERERHQDRVARL 311 (406)
T ss_pred eEEEEeCchhhcccC---ceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHH---hhC-HHHHHHHHHHHHHH
Confidence 578899999998766 9999999998888766543 34566777788888888751 112 22345667788899
Q ss_pred HHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC---CCCeEEEEeec--
Q 018665 253 VKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAA-- 327 (352)
Q Consensus 253 ~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~---~~~~iRi~~~~-- 327 (352)
.+.|++. |+.+..+.+.+ +.+.+++.. ++.++.++|++++||.+.++.... ..+++|++++.
T Consensus 312 ~~~L~~~-g~~~~~~~~~i-~~v~~~~~~-----------~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~ 378 (406)
T PRK13393 312 RARLDKA-GIPHLPNPSHI-VPVMVGDPV-----------LCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLH 378 (406)
T ss_pred HHHHHHc-CCCcCCCCCCe-EEEEeCCHH-----------HHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCC
Confidence 9999876 77666555544 444443210 467888888876699998764333 23689999986
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 018665 328 SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 328 ~~~~l~~~~~~l~~~~~~~ 346 (352)
+++|++++++.|+++++++
T Consensus 379 t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 379 TDADIEHLVQALSEIWARL 397 (406)
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998765
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=212.98 Aligned_cols=307 Identities=15% Similarity=0.087 Sum_probs=213.9
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH-----H
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-----A 77 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~-----~ 77 (352)
|++..+...++ +.+++.+. .+| .+...|+++ |+++++..++.++.++||+|+++.|+|..+... +
T Consensus 57 ~~~~~~~~~l~------~~~~~~~~~~~g--~~~~~v~~~-sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~ 127 (402)
T cd00378 57 YGGCEYVDEIE------DLAIERAKKLFG--AEYANVQPH-SGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKV 127 (402)
T ss_pred cCCchHHHHHH------HHHHHHHHHHhC--CCceeeecC-CcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccc
Confidence 33444445555 55444443 333 334455555 567999999999999999999999999876543 6
Q ss_pred HhcCCeEEEecccCC-CCcccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc-cc
Q 018665 78 RIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY-EH 154 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~-~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~-~~ 154 (352)
+..|.++..++++.+ .++.+|++++++.++ ++++++++++++|| ...+ +++|+++|+++ |+++|+|++| .+
T Consensus 128 ~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~--~~~~---~~~I~~l~~~~-~~~li~D~a~~~g 201 (402)
T cd00378 128 SASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYP--RPID---FKRFREIADEV-GAYLLVDMAHVAG 201 (402)
T ss_pred cccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccC--CCcC---HHHHHHHHHhc-CCEEEEEccchhh
Confidence 678888888877654 257799999999985 57899988888775 4556 89999999999 9999999996 34
Q ss_pred cccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcCh-hHHHHHHhhhhccccCCC-hHHHHHHHHHhcccC
Q 018665 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFTSGAS-SISQKAGVAALGLGY 232 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~ 232 (352)
+.+.+....++. ...++++|+||++ +|+|.|++++++ ++++.+.........+.+ ...+.++..++...
T Consensus 202 ~~~~g~~~~~~~------~~dv~~~s~sK~l--~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~- 272 (402)
T cd00378 202 LVAGGVFPNPLP------GADVVTTTTHKTL--RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEA- 272 (402)
T ss_pred hhhcccCCCccc------CCcEEEeccccCC--CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHH-
Confidence 333332222222 1237899999987 678899999877 888888765433333322 23333333344321
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCceec-CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~ 311 (352)
.....++.+++++++++.+.+.|+++ |+.+. .+.+++++|+++++.. .+...+.+.|. +.||.+.+
T Consensus 273 -~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~----------~~~~~~~~~l~-~~gI~v~~ 339 (402)
T cd00378 273 -LEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDLRPKG----------ITGKAAEDALE-EAGITVNK 339 (402)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeCCccC----------CCHHHHHHHHH-HcCcEEcC
Confidence 12256777888999999999999987 88776 4567888999987421 14556666554 56999975
Q ss_pred CCCC------CCCCeEEEEeec------CHHHHHHHHHHHHHHHhhhC
Q 018665 312 GDAF------GDDTCIRISYAA------SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 312 g~~~------~~~~~iRi~~~~------~~~~l~~~~~~l~~~~~~~~ 347 (352)
.... ..+.++|+++.. +++|++.+++.|++++.+-.
T Consensus 340 ~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 340 NTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAE 387 (402)
T ss_pred CcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 4321 134689999866 48999999999999886543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=198.74 Aligned_cols=316 Identities=18% Similarity=0.218 Sum_probs=204.7
Q ss_pred Ccc-CCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHH-HHHH-HHh----cC--------CCCEEEec
Q 018665 2 QFV-RVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSI-LQAV-LAV----CS--------PGDEVIIP 66 (352)
Q Consensus 2 ~~y-~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~-~~~~-~~l----~~--------~~~~vl~~ 66 (352)
.+| |...|.+++| +.+|+.++ +++++|++..+++-.+ ..++ .++ .. ..-+.|+|
T Consensus 62 RNY~G~l~Gipe~r------~l~a~llg-----v~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCP 130 (425)
T PF12897_consen 62 RNYPGGLDGIPEAR------ELFAELLG-----VPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCP 130 (425)
T ss_dssp TSS-S-SS--HHHH------HHHHHHHT-----S-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEE
T ss_pred cCCCCccCChHHHH------HHHHHHhC-----CCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEec
Confidence 478 9999999999 99999998 8899998887666544 2222 222 11 12478999
Q ss_pred CCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhcc--CCeeEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCC
Q 018665 67 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPR 143 (352)
Q Consensus 67 ~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~--~~~~~i~i~~p-~nptG~~~~~~~l~~l~~~~~~~~~ 143 (352)
.|.|..+..+++.+|++.+.||+.+++ .|+|.+++.+. +.++.|+++.- +||||.+++++.+++++++--..||
T Consensus 131 vPGYDRHFai~E~~Giemi~VpM~~dG---PDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~D 207 (425)
T PF12897_consen 131 VPGYDRHFAITEHFGIEMIPVPMTEDG---PDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPD 207 (425)
T ss_dssp ES--HHHHHHHHHCT-EEEEEEEETTE---E-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT
T ss_pred CCCchHHHHHHHhhCcEEEecCCCCCC---CCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcC
Confidence 999999999999999999999998544 69999999984 46777775443 8999999999999999988433359
Q ss_pred EEEEecccccccccCCCCc-c---cc---ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCC
Q 018665 144 LLVLSDEIYEHIIYAPATH-T---SF---ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 216 (352)
Q Consensus 144 ~~livD~~~~~~~~~~~~~-~---~~---~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~ 216 (352)
..|+-|++|....+.+... . .+ ..-.+.+++++.+.|.||.. .+|-+++++.++++-++.+.+.....+.++
T Consensus 208 FRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~aaS~~Nl~~~~~~~~~~tIgp 286 (425)
T PF12897_consen 208 FRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFFAASEANLAWIKKHLSVQTIGP 286 (425)
T ss_dssp -EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEEE-HHHHHHHHHHHHHH-S--
T ss_pred eEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeeeecCHHHHHHHHHHhcCceeCc
Confidence 9999999999655522211 1 11 11245578999999999997 499999999999999999998888888999
Q ss_pred ChHHHHHHHHHhcccC-CChHHHHHHHHHHHHHHHHHH----HHhc-ccCCceecCCCCceEEEeecCCccCCcccCCCC
Q 018665 217 SSISQKAGVAALGLGY-AGGEVVSKMVKAFRERRDFLV----KSFG-ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 290 (352)
Q Consensus 217 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~----~~l~-~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 290 (352)
..+.|..-.+++.+.. ....++++.++.++-+.+... +.|. .....+|..|.+|+|++++..++
T Consensus 287 dKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G---------- 356 (425)
T PF12897_consen 287 DKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG---------- 356 (425)
T ss_dssp -HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT----------
T ss_pred cHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC----------
Confidence 9999999999998721 112334444444444444444 4444 34346899999999999998875
Q ss_pred CCChHHHHHHHHHccCEEeccCCCCCC------CCeEEEEeec-CHHHHHHHHHHHHHHHhh
Q 018665 291 IENSESLCRYLLDKAQVALVPGDAFGD------DTCIRISYAA-SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 291 ~~~~~~~~~~l~~~~gi~i~~g~~~~~------~~~iRi~~~~-~~~~l~~~~~~l~~~~~~ 345 (352)
.+.++++... +.||.+.|.+..++ +..|||+++. +.||++.+++.+...++-
T Consensus 357 --~AkrvV~lak-eAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~l 415 (425)
T PF12897_consen 357 --TAKRVVELAK-EAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKL 415 (425)
T ss_dssp ---HHHHHHHHH-HTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHH-HhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 7888887655 55999988544322 4689999999 789999999988877653
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=208.99 Aligned_cols=289 Identities=15% Similarity=0.155 Sum_probs=212.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC----CCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ .+.+++++++|+++++..++.++.+ ++++|++.++.|.++...++..|.+++.++.+ .++.
T Consensus 66 ~~la~~~g-----~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~--~~~~ 138 (371)
T PRK13520 66 EMLGELLH-----LPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLD--DDYR 138 (371)
T ss_pred HHHHHHhC-----CCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHcCceEEEecCC--CCCc
Confidence 77777765 5556789999999999988877643 46899999999999999999999999999886 3456
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
+|+++|+++++++++.+++++++|++|...| +++|.++|+++ |+++++|++|+++...-........... .+...
T Consensus 139 ~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~-g~~livD~a~~~~~~~~~~~~~~~~~~~-~~vd~ 213 (371)
T PRK13520 139 VDVKAVEDLIDDNTIGIVGIAGTTELGQVDP---IPELSKIALEN-GIFLHVDAAFGGFVIPFLDDPPNFDFSL-PGVDS 213 (371)
T ss_pred CCHHHHHHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHc-CCCEEEEecchhHHHHhhcCCCCccccC-CCCce
Confidence 8999999999888888888888999999999 99999999999 9999999999865321000001011111 12335
Q ss_pred EEeccccccccccceeEEEEc-ChhHHHHHHhhhhcc--------ccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF--------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 247 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 247 (352)
+..|.+|+. .++.++|+++. ++++++.+....... ..+.+.....++.++++. ...+..++..++..+
T Consensus 214 ~~~s~~K~~-~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~--l~~~g~~~~~~~~~~ 290 (371)
T PRK13520 214 ITIDPHKMG-LAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKY--LGREGYRKVVERCME 290 (371)
T ss_pred EEECCcccc-CccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhh--hcHhHHHHHHHHHHH
Confidence 667888964 46778887775 556777654221111 112344556666666654 124556788889999
Q ss_pred HHHHHHHHhcccCCce-ecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEee
Q 018665 248 RRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326 (352)
Q Consensus 248 ~~~~l~~~l~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~ 326 (352)
+++++.+.|+++ |++ +..+..+ ++.+.++ +..++.+.|.++ ||.+.++. .+.++|++++
T Consensus 291 ~~~~l~~~L~~~-g~~~~~~~~~~-~v~~~~~--------------~~~~v~~~L~~~-gi~v~~~~---~~~~iRis~~ 350 (371)
T PRK13520 291 NTRWLAEELKER-GFEPVIEPVLN-IVAFDDP--------------NPDEVREKLRER-GWRVSVTR---CPEALRIVCM 350 (371)
T ss_pred HHHHHHHHHHhC-CCEEecCCCce-EEEEecC--------------CHHHHHHHHHHC-CceeccCC---CCCEEEEEEE
Confidence 999999999988 887 4444444 4556654 567888888876 89887643 4578999987
Q ss_pred c--CHHHHHHHHHHHHHHHh
Q 018665 327 A--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 327 ~--~~~~l~~~~~~l~~~~~ 344 (352)
. +++|++++++.|+++++
T Consensus 351 ~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 351 PHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 5 89999999999998875
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=209.57 Aligned_cols=290 Identities=21% Similarity=0.277 Sum_probs=207.9
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH-----Hhc
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-----RIA 80 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~-----~~~ 80 (352)
+++...+++ +.+|++++ .+.+++++|+++|+..++.+++++||+|+++.|.|..+...+ +..
T Consensus 74 ~~Pt~~~LE------~~lA~l~g-------~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~ 140 (418)
T PLN02242 74 FNPTVLNLG------RQMAALEG-------TEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKC 140 (418)
T ss_pred CChhHHHHH------HHHHHHhC-------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhcc
Confidence 345556666 99999974 567789999999999999999999999999999998887655 347
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
|.+++.++.. |++++++++++ ++++|++++|+||||.+.+ +++|+++|+++ |+++|+|++|..+.+..
T Consensus 141 G~~~~~~d~~-------d~e~l~~~i~~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~-gi~livDea~~~~~~~~ 209 (418)
T PLN02242 141 NITTTFVDIT-------DLEAVKKAVVPGKTKVLYFESISNPTLTVAD---IPELARIAHEK-GVTVVVDNTFAPMVLSP 209 (418)
T ss_pred CceEEEcCCC-------CHHHHHHhcCcCCCEEEEEecCCCCCCcccC---HHHHHHHHHHh-CCEEEEECCCCccCCCH
Confidence 8887777642 89999999987 4999999999999999998 99999999999 99999999997653311
Q ss_pred CCccccccCCCCCCceEEEeccccccccccce-eEEEEcChhHHHHHHhhhhc--cccCCChHHHHHHHHHhcccCCChH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~-~g~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
.. .+.++++.|+||.++.+|.+ .||+++++++++.+...... ...+.+...+.+...+... +
T Consensus 210 ------~~----~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l-----~ 274 (418)
T PLN02242 210 ------AR----LGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERL-----P 274 (418)
T ss_pred ------HH----cCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCC-----C
Confidence 11 23559999999999767766 59999999998888766432 2334555566655555542 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCCC-------------------CceEEEeecCCccCCcccCCCCCCChHHH
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-------------------GAFYLFIDFSTYYGSEAEGFGKIENSESL 297 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (352)
.+..+.+++++++..+.+.|+++ ++.+..|. .|-++.+++.+. +.+.++
T Consensus 275 tl~~r~~~~~~~a~~la~~L~~~-~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~-----------~~~~~f 342 (418)
T PLN02242 275 HLSLRMKEHCRRAMEYAKRMKEL-GLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTE-----------ERANRL 342 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC-CCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCH-----------HHHHHH
Confidence 55566778899999999999987 56665432 233455665321 134556
Q ss_pred HHHHHHcc---CEEeccCCCCC-----------------------CCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 298 CRYLLDKA---QVALVPGDAFG-----------------------DDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 298 ~~~l~~~~---gi~i~~g~~~~-----------------------~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
.+.|.--. .+.+..|+... .++.+|||++.. ++.+.+++.|+.+++..+
T Consensus 343 ~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE-~~~~dli~dl~~al~~~~ 417 (418)
T PLN02242 343 MRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYT-GTLEQRWSQFEKALSAMK 417 (418)
T ss_pred HHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCC-CCHHHHHHHHHHHHHHhh
Confidence 65554100 12233332111 135799999983 236777777777776643
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=209.30 Aligned_cols=311 Identities=15% Similarity=0.164 Sum_probs=210.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
+|+....+.+++ +++|++++ ..+.+++++|.+ ++..++.+++++||.|+++.+.|.++...++..+.
T Consensus 38 ~yg~~~~~~~LE------~~lA~~~g------~e~al~~~sG~~-a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~ 104 (392)
T PLN03227 38 FYGTIDAHLELE------QCMAEFLG------TESAILYSDGAS-TTSSTVAAFAKRGDLLVVDRGVNEALLVGVSLSRA 104 (392)
T ss_pred ccCChHHHHHHH------HHHHHHhC------CCcEEEecCcHH-HHHHHHHHhCCCCCEEEEeccccHHHHHHHHHcCC
Confidence 577777788888 99999996 345555555554 45578888999999999999999999988888888
Q ss_pred eEEEecccCCCCcccCHHHHHhhcc-----------CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLT-----------EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~-----------~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
+++.++..+. -+++++.+.++ +++++|++++++||+|.+.| ++++.++|+++ |+++|+||+
T Consensus 105 ~~~~~~~~d~----~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~---l~~i~~l~~~~-g~~livDe~ 176 (392)
T PLN03227 105 NVRWFRHNDM----KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP---LKELVALKEEF-HYRLILDES 176 (392)
T ss_pred eEEEeCCCCH----HHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC---HHHHHHHHHHc-CCEEEEECc
Confidence 8887775411 13444443442 25788899999999999999 88999999999 999999999
Q ss_pred ccccccCCCCcccccc---CCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCC--ChHHHHHHHH
Q 018665 152 YEHIIYAPATHTSFAS---LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA--SSISQKAGVA 226 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 226 (352)
|+ +...|........ +....+.++++.|++|.+| ...|++++++++++.+.......+++. +++.+.++.+
T Consensus 177 ~~-~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g---~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~ 252 (392)
T PLN03227 177 FS-FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG---SVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADAT 252 (392)
T ss_pred cc-ccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh---ccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHH
Confidence 98 4333322112222 2112355799999999876 345888899998877765433333333 4656666666
Q ss_pred HhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCce----------ecCCCCceEEEeecCCccCCcccCCCCCCChHH
Q 018665 227 ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK----------MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 296 (352)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~----------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
++... ...+++.++++++.+++.+.|++. +.. +.....+.++.+.+.+..... .........+
T Consensus 253 al~~~----~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~--~~~~~~~~~~ 325 (392)
T PLN03227 253 ATAGE----LAGPQLLNRLHDSIANLYSTLTNS-SHPYALKLRNRLVITSDPISPIIYLRLSDQEATR--RTDETLILDQ 325 (392)
T ss_pred HHHHH----hcCHHHHHHHHHHHHHHHHHHHhc-CCccccccccccccCCCCCCCEEEEEeCCHHHhh--hhhhhhHHHH
Confidence 66431 113456777888888888888753 222 112234556667764321000 0000001247
Q ss_pred HHHHHHHccCEEeccCC-------CCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 297 LCRYLLDKAQVALVPGD-------AFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 297 ~~~~l~~~~gi~i~~g~-------~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+.+.+.++ |+.+.+.. .+-++..+|++++. ++||++++++.|+++++++
T Consensus 326 ~~~~~~~~-Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 326 IAHHSLSE-GVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAI 383 (392)
T ss_pred HHHHHHHC-CCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 88888876 88886532 12346789999988 9999999999999999775
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=210.28 Aligned_cols=271 Identities=16% Similarity=0.199 Sum_probs=197.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC----------CCCEEEecCCCCCChH-HHHHhcCCe------------EEEecccCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS----------PGDEVIIPAPFWVSYP-EMARIADAT------------PVILPTRIS 92 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~----------~~~~vl~~~~~~~~~~-~~~~~~g~~------------v~~i~~~~~ 92 (352)
.+.++++++|++|++.+++.+.. ..++|+..+.+|++.. ..+...+.. +..++.
T Consensus 97 ~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 173 (396)
T PRK04073 97 KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY--- 173 (396)
T ss_pred CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC---
Confidence 46899999999999999987631 2367887777666554 343322211 112221
Q ss_pred CCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCH-HHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK-NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 93 ~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~-~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
.|++++++.++++++++++++++||+|..+|. +++++|.++|+++ |+++|+||+|.++.+++... .. ...
T Consensus 174 ----~d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g~~~-~~-~~~-- 244 (396)
T PRK04073 174 ----GDLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEE-NVLFIADEIQTGLGRTGKLF-AC-DWD-- 244 (396)
T ss_pred ----CCHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhCCCcCcHHH-Hh-hhc--
Confidence 27899999998889999999999999998775 4799999999999 99999999999876655321 11 111
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHH
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 251 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
+...-+.++||.+|.+|+|+|++++++++++.+.......+++.+++.+.++.++|+.. .+ +.+.++.+++.++
T Consensus 245 -~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~~--~~l~~~~~~~~~~ 318 (396)
T PRK04073 245 -NVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVL---EE--EKLPERSLELGEY 318 (396)
T ss_pred -CCCCCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHH
Confidence 11122456899999777999999999999998876555566778999999999998741 11 2344566667788
Q ss_pred HHHHhccc--CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--
Q 018665 252 LVKSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-- 327 (352)
Q Consensus 252 l~~~l~~~--~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-- 327 (352)
+.+.|+++ +.+..+.+ .|.+++++++. ++.++.++|.++ ||.+.+. .++++|++++.
T Consensus 319 l~~~L~~l~~~~i~~~~~-~g~~~~~~~~~-------------~~~~~~~~l~~~-Gv~~~~~----~~~~iRi~p~l~~ 379 (396)
T PRK04073 319 FKEQLKEIDNPMIKEVRG-RGLFIGVELNE-------------PARPYCEALKEE-GLLCKET----HETVIRFAPPLVI 379 (396)
T ss_pred HHHHHHhhcCCcccceec-ceEEEEEEecc-------------hHHHHHHHHHHC-CeEEecC----CCCEEEEECCccc
Confidence 88888765 23333333 36667787753 567888998876 9998763 25799999765
Q ss_pred CHHHHHHHHHHHHHHH
Q 018665 328 SLTTLQAAVERIKKGL 343 (352)
Q Consensus 328 ~~~~l~~~~~~l~~~~ 343 (352)
+++++++++++|++++
T Consensus 380 t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 380 TKEELDWAFEKIKAVL 395 (396)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999999875
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=212.32 Aligned_cols=289 Identities=16% Similarity=0.184 Sum_probs=207.0
Q ss_pred hhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEecCCCCCChHHHH---HhcCCeEEEeccc
Q 018665 18 SFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPEMA---RIADATPVILPTR 90 (352)
Q Consensus 18 ~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~~~~vl~~~~~~~~~~~~~---~~~g~~v~~i~~~ 90 (352)
++++.++++++ .+++++++++|+|++++.++.++. ++||.|+++.++|.++...+ +..|.+++.++++
T Consensus 53 ~~r~~ia~~~g-----~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~ 127 (404)
T PRK14012 53 IARNQIADLIG-----ADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQ 127 (404)
T ss_pred HHHHHHHHHcC-----cCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccC
Confidence 34488888886 667889999999999998887763 67899999999998876544 4469999999887
Q ss_pred CCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCC
Q 018665 91 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 170 (352)
Q Consensus 91 ~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~ 170 (352)
. ++.+|+++++++++++++++++++++||||.+.| +++|.++|+++ |+++|+|++++. +..+..+..
T Consensus 128 ~--~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~-g~~vivD~a~~~----g~~~~~~~~--- 194 (404)
T PRK14012 128 S--NGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQD---IAAIGEICRER-GIIFHVDAAQSV----GKVPIDLSK--- 194 (404)
T ss_pred C--CCcCCHHHHHHhcCCCCEEEEEECcCCCccchhh---HHHHHHHHHHc-CCEEEEEcchhc----CCcccCccc---
Confidence 3 4568999999999989999999999999999999 89999999999 999999999875 222222222
Q ss_pred CCCceEEEeccccccccccceeEEEEcChhHHHHHHhh-------hhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 171 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 171 ~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
.+-++++.|++|.+| ++ ++|+++++++....+... ......+++.....+..+++... .....+..+
T Consensus 195 -~~~D~~~~s~~K~~g-p~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~---~~~~~~~~~ 268 (404)
T PRK14012 195 -LKVDLMSFSAHKIYG-PK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIA---KEEMATENE 268 (404)
T ss_pred -CCCCEEEEehhhccC-CC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHH---HhhHHHHHH
Confidence 233478889999876 44 688888776543222211 00112234555555555555531 234556677
Q ss_pred HHHHHHHHHHHHhcccCCceecCC---C--CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC-
Q 018665 244 AFRERRDFLVKSFGELEGVKMSEP---Q--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD- 317 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~~~---~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~- 317 (352)
+.+++++++.+.|++++++.+..+ . ..+.+++... +..++...|. ++.+..|..|..
T Consensus 269 ~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~---~~~i~~g~~~~~~ 331 (404)
T PRK14012 269 RIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYV--------------EGESLIMALK---DLAVSSGSACTSA 331 (404)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCc--------------CHHHHHHhCC---CeEEEchhhhCCC
Confidence 888888999999988877766422 1 1223444432 3345655543 566666654422
Q ss_pred ------------------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 318 ------------------DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 318 ------------------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
.+.+|+|++. +++|++++++.|+++++.++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~ 381 (404)
T PRK14012 332 SLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLR 381 (404)
T ss_pred CCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3689999998 89999999999999987763
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-26 Score=205.44 Aligned_cols=285 Identities=14% Similarity=0.172 Sum_probs=202.0
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH----HHHHhcC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIAD 81 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~----~~~~~~g 81 (352)
+++...+++ +.+|++.+ .+..++++|+++++..++ .++++||+|+++.|.|.+.. ..++..|
T Consensus 50 ~~pt~~~le------~~la~l~g-------~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G 115 (366)
T PRK08247 50 GNPTRGVLE------QAIADLEG-------GDQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWN 115 (366)
T ss_pred CCchHHHHH------HHHHHHhC-------CCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccC
Confidence 344556677 99999986 233577888899998765 57789999999999999754 3455689
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
++++.++. .|++++++++++++++|++++|+||+|...+ +++|+++|+++ |+++|+|++|.....
T Consensus 116 ~~v~~vd~-------~d~~~l~~~i~~~tklv~le~P~NP~~~~~d---l~~I~~la~~~-g~~lIvD~t~~~~~~---- 180 (366)
T PRK08247 116 VRFVYVNT-------ASLKAIEQAITPNTKAIFIETPTNPLMQETD---IAAIAKIAKKH-GLLLIVDNTFYTPVL---- 180 (366)
T ss_pred ceEEEECC-------CCHHHHHHhcccCceEEEEECCCCCCCcHHH---HHHHHHHHHHc-CCEEEEECCCccccc----
Confidence 99998875 2889999999889999999999999876655 99999999999 999999999853111
Q ss_pred ccccccCCCCCCceEEEecccccccc-ccceeEEEEcC-hhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~-~g~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
..++ ..+.++++.|+||.++. ++.+.|+++++ +++++.+...+...+...+++.+..+...++. +.
T Consensus 181 ~~p~-----~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t-------l~ 248 (366)
T PRK08247 181 QRPL-----EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKT-------LA 248 (366)
T ss_pred cCch-----hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCc-------HH
Confidence 1111 13556999999999963 24688999986 67878777666655566777777766665543 34
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcee-cCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHH---------HccCEE
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKM-SEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL---------DKAQVA 308 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~-~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~gi~ 308 (352)
...++.+++++.+.+.|+++|++.. ..| .+|++.| .+... . ...++.+.+. ....+.
T Consensus 249 ~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~-~----------~~~~~~~~l~~~~~~~slg~~~sl~ 316 (366)
T PRK08247 249 LRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDE-E----------WVNPFLKSLKLITFAESLGGVESFI 316 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCH-H----------HHHHHHHcCCcceEccCCCCCceEE
Confidence 4555678899999999999888864 444 6777665 55321 0 1222222211 122445
Q ss_pred eccCCCCC-------------CCCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 309 LVPGDAFG-------------DDTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 309 i~~g~~~~-------------~~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
+.|++.+. .++.+|+|++. |+.+.+++.|+.++..
T Consensus 317 ~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl--E~~~dl~~dl~~al~~ 364 (366)
T PRK08247 317 TYPATQTHADIPEEIRIANGVCNRLLRFSVGI--ENVEDLIADLKQAFKQ 364 (366)
T ss_pred ECCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence 55654321 13579999998 3556666666666654
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=206.51 Aligned_cols=288 Identities=15% Similarity=0.179 Sum_probs=202.1
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChH-HHHHhcCCeEE---EecccCCC
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYP-EMARIADATPV---ILPTRISE 93 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~-~~~~~~g~~v~---~i~~~~~~ 93 (352)
+.+++++. ..+ .+.+++++++++|++.+++... ..+++|++.++.|++.. ......+.... ..+...+.
T Consensus 74 ~~la~~l~~~~~----~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (377)
T PRK02936 74 EEVASLLAENSA----GDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGF 149 (377)
T ss_pred HHHHHHHHhcCC----CCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCc
Confidence 77888886 222 3589999999999999998642 23467899888887554 23332221110 11111100
Q ss_pred Cc--ccCHHHHHhhccCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCC
Q 018665 94 NF--LLDPKVLESKLTEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 170 (352)
Q Consensus 94 ~~--~~d~~~l~~~l~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~ 170 (352)
.+ ..|++.+++.+.+++++++++.+++++|.. .+.+++++|.++|++| |+++|+||+|.++.++|.. .+......
T Consensus 150 ~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DEv~~g~g~~g~~-~~~~~~~~ 227 (377)
T PRK02936 150 THVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKF-GALLIIDEVQTGIGRTGTL-FAYEQFGL 227 (377)
T ss_pred eEeCCCCHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCchh-hHHHhhCC
Confidence 00 027899999998889999999889988876 5788999999999999 9999999999988776642 22222211
Q ss_pred CCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHH
Q 018665 171 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 250 (352)
Q Consensus 171 ~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
. ++ +.++||.++ +|+|+|++++++++.+.+.......+++++++.+.++.++++... .++..++++++.+
T Consensus 228 ~-~d---i~t~sK~l~-~G~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-----~~~~~~~~~~~~~ 297 (377)
T PRK02936 228 D-PD---IVTVAKGLG-NGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIK-----QPSFLEEVQEKGE 297 (377)
T ss_pred C-Cc---EEEEccccc-CCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHH-----hccHHHHHHHHHH
Confidence 1 12 447999999 899999999999999888655555567789999999999997521 1233445555555
Q ss_pred HHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEee
Q 018665 251 FLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326 (352)
Q Consensus 251 ~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~ 326 (352)
.+.+.|++ ++.+..+. ..|+++|+++++ +...+.+.|.++ ||.+.|++ .+++|++++
T Consensus 298 ~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~-------------~~~~~~~~l~~~-gv~v~~~g----~~~lRi~p~ 358 (377)
T PRK02936 298 YFLQKLQEELEHLECVKNIR-GKGLMIGIECTE-------------EVAPVIEQLREE-GLLVLSAG----PNVIRLLPP 358 (377)
T ss_pred HHHHHHHHHHhhCCcEEeEe-ecceEEEEEecc-------------hHHHHHHHHHHC-CeEEecCC----CCEEEEECC
Confidence 55555554 33333233 356789998864 466788877765 89998753 579999974
Q ss_pred c--CHHHHHHHHHHHHHHH
Q 018665 327 A--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 327 ~--~~~~l~~~~~~l~~~~ 343 (352)
. +++++++++++|++++
T Consensus 359 ~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 359 LVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred cccCHHHHHHHHHHHHHhC
Confidence 4 9999999999998764
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-26 Score=205.72 Aligned_cols=287 Identities=16% Similarity=0.183 Sum_probs=206.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc------CCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC------SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~------~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~ 94 (352)
+.+|++++ ++++++++++|+++++..++.++. ++|++|++++++|.++...++..|.+++.++.+ .+
T Consensus 66 ~~la~~~g-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~--~~ 138 (373)
T TIGR03812 66 GSLGNLLH-----LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYAPLD--ED 138 (373)
T ss_pred HHHHHHhC-----CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEEeeC--CC
Confidence 88888886 566788899999999988776653 356899999999999999999999999999986 35
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc-cccccCCC-CC
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPG-MW 172 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~-~~~~~~~~-~~ 172 (352)
+.+|++++++.+++++..+++.+|+||+|...| +++|.++|+++ |+++++|++|+.+...-... .....+.. ..
T Consensus 139 ~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~-~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~ 214 (373)
T TIGR03812 139 YTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDD---IEELSKIALEN-GIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLP 214 (373)
T ss_pred CCcCHHHHHHHHhhCcEEEEEECCCCCCCccCC---HHHHHHHHHHc-CCeEEEEcCchhHHHHHHhcCCCCCCccccCC
Confidence 668999999999877755555568999999999 99999999999 99999999998543110000 00000000 01
Q ss_pred CceEEEeccccccccccceeEEEE-cChhHHHHHHhhhhccc--------cCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 173 ERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFT--------SGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 173 ~~~i~~~s~sK~~g~~g~~~g~l~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
+-..+..|.+|+ ++++.+.|+++ .++++++.+.....+.. .+.+.....++.++++. ...+.+++..+
T Consensus 215 ~~d~~~~s~~K~-~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~--l~~~g~~~~~~ 291 (373)
T TIGR03812 215 GVQSITIDPHKM-GLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKY--LGREGYRKIVA 291 (373)
T ss_pred CCCEEEECcccc-CCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHH--hCHHHHHHHHH
Confidence 223556788894 44666777555 67777776642111111 13445556666666654 12566788889
Q ss_pred HHHHHHHHHHHHhcccCCce-ecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEE
Q 018665 244 AFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 322 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iR 322 (352)
+..++++++.+.|+++ +.. +..+. ..++.+.++ +..++.+.|.++ ||.+.++. .+.++|
T Consensus 292 ~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~v~~~~~--------------~~~~v~~~L~~~-gi~v~~~~---~~~~iR 351 (373)
T TIGR03812 292 ECMENTRYLVEELKKI-GFEPVIEPV-LNIVAFEVD--------------DPEEVRKKLRDR-GWYVSVTR---CPKALR 351 (373)
T ss_pred HHHHHHHHHHHHHHhC-CCeEEcCCC-ceEEEEEeC--------------CHHHHHHHHHHC-CceeccCC---CCCEEE
Confidence 9999999999999988 554 44433 344556554 345788888876 89887642 467999
Q ss_pred EEeec--CHHHHHHHHHHHHH
Q 018665 323 ISYAA--SLTTLQAAVERIKK 341 (352)
Q Consensus 323 i~~~~--~~~~l~~~~~~l~~ 341 (352)
+++.. +++|++++++.|++
T Consensus 352 is~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 352 IVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred EEEECCCCHHHHHHHHHHHhh
Confidence 99985 88999999999976
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=209.39 Aligned_cols=289 Identities=16% Similarity=0.193 Sum_probs=200.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHhc-------------CCeEEEecccCC----CCc
Q 018665 35 TPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-------------DATPVILPTRIS----ENF 95 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~~-------------g~~v~~i~~~~~----~~~ 95 (352)
..+++++++|+++|+..+++.+. .++++|++.+++|+++....... ..++..+|.++. ..+
T Consensus 95 ~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (413)
T cd00610 95 GLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAEL 174 (413)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhH
Confidence 57899999999999999999873 56789999999999876544332 123556665421 123
Q ss_pred ccCHHHHHhhccC---CeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 96 LLDPKVLESKLTE---KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 96 ~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
..|++.|++.+++ ++++++++..++++|..+ +.+++++|.++|+++ |+++|+||+|+++...+.. .......
T Consensus 175 ~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~g~g~~g~~-~~~~~~~-- 250 (413)
T cd00610 175 ADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKH-GILLIADEVQTGFGRTGKM-FAFEHFG-- 250 (413)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcch-hhHhhcC--
Confidence 4588999998865 455666665577889876 677799999999999 9999999999986544431 1111111
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHHHH--HhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC--NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 249 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (352)
....+.|+||.++ +|+|+|++++++++++.+ .......+++.+++.+.++.++++. .+. .++.++++++.
T Consensus 251 --~~~d~~t~sK~l~-~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~----l~~-~~~~~~~~~~~ 322 (413)
T cd00610 251 --VEPDIVTLGKGLG-GGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEV----LEE-EGLLENAAELG 322 (413)
T ss_pred --CCCCeEEEccccc-CccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHH----HHh-ccHHHHHHHHH
Confidence 1122568899998 689999999999998886 3334445677888888888888864 111 34556677777
Q ss_pred HHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEee
Q 018665 250 DFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326 (352)
Q Consensus 250 ~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~ 326 (352)
+++.+.|+.+. ++.......|.++++.+++....... .......+.+.|.++ ||.+.|++ ++.+|++++
T Consensus 323 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~-gv~v~~~~----~~~lR~~~~ 394 (413)
T cd00610 323 EYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPP---DKELAAKIIKAALER-GLLLRPSG----GNVIRLLPP 394 (413)
T ss_pred HHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCc---chHHHHHHHHHHHHC-CeEEeecC----CCEEEEECC
Confidence 77777776541 21111234567777777542100000 001456788888876 99999874 678999887
Q ss_pred c--CHHHHHHHHHHHHHHH
Q 018665 327 A--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 327 ~--~~~~l~~~~~~l~~~~ 343 (352)
. +++++++++++|++++
T Consensus 395 ~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 395 LIITEEEIDEGLDALDEAL 413 (413)
T ss_pred CcCCHHHHHHHHHHHHHhC
Confidence 6 8899999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=196.83 Aligned_cols=309 Identities=17% Similarity=0.173 Sum_probs=237.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcE--EEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQI--LVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i--~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~ 77 (352)
.|-|-.|.++.+ +.+++++- ....-+..+.+ +-|.|||+|+..+..-+. .+..+|.+++|+|..+..++
T Consensus 64 ~Yl~i~G~~~f~------~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If 137 (396)
T COG1448 64 NYLPIEGLPEFL------EAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIF 137 (396)
T ss_pred ccCCcCCcHHHH------HHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHH
Confidence 578888999999 99999985 11111233333 667999999998887663 45567999999999999999
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+..|.++..+|.-+..+..+|.+.+...++. +..++...+.|||||.-++.+++++|+++.++. +.+-++|-+|.+
T Consensus 138 ~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r-~lip~~D~AYQG 216 (396)
T COG1448 138 EAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKER-GLIPFFDIAYQG 216 (396)
T ss_pred HhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeeeehhhhh
Confidence 9999999999988777777999998888853 444444567799999999999999999999999 999999999998
Q ss_pred cccCCCCc-cccccCCCCCCceEEEeccccccccccceeEEEEc---ChhH----HHHHHhhhhccccCCChHHHHHHHH
Q 018665 155 IIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKHF----VAACNKIQSQFTSGASSISQKAGVA 226 (352)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (352)
|......+ ..++.+.......++..|+||.||+-|.|+|.+.. +.+. ..++....+....+|+..+...++.
T Consensus 217 F~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~ 296 (396)
T COG1448 217 FADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVAT 296 (396)
T ss_pred hccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 75432111 12222222223479999999999999999998763 3333 3444555555566788899999999
Q ss_pred HhcccCCChHH---HHHHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHH
Q 018665 227 ALGLGYAGGEV---VSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 227 ~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
.|++..+..+| +...+.++.++|..+.+.|++. ..+.++..+.|+|.+..+ +.+-+.+
T Consensus 297 IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gl----------------s~~QV~r 360 (396)
T COG1448 297 ILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGL----------------SPEQVDR 360 (396)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCC----------------CHHHHHH
Confidence 99885543444 5566788899999999999874 248888899999876643 3344578
Q ss_pred HHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHH
Q 018665 301 LLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKG 342 (352)
Q Consensus 301 l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~ 342 (352)
|++++||++..++ |||++. ++..++.+.+.|.++
T Consensus 361 Lree~~IY~v~sG--------Ri~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 361 LREEFGIYLVASG--------RINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred HHHhccEEEecCC--------eeeeccCChhhHHHHHHHHHhh
Confidence 8999999998865 999998 999999999998876
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=207.74 Aligned_cols=274 Identities=17% Similarity=0.179 Sum_probs=207.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh----cCCCCEEEecCCCCCChHHHH---HhcCCeEEEecccCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV----CSPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISE 93 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l----~~~~~~vl~~~~~~~~~~~~~---~~~g~~v~~i~~~~~~ 93 (352)
+.++++++ .++++|++++|+|++++.++..+ .++|++|++....|+++...+ +..|.+++.++++ .
T Consensus 50 ~~la~~~g-----~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~ 122 (364)
T PLN02651 50 AQVAALIG-----ADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK--S 122 (364)
T ss_pred HHHHHHhC-----CCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccC--C
Confidence 77888776 66789999999999988877654 467899999998887765443 4579999999886 3
Q ss_pred CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 94 ~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
++.+|+++++++++++++++++++++|+||...| +++|.++|+++ |+++++|++++. |..+..+.. .+
T Consensus 123 ~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~---l~~I~~~~~~~-g~~~~vD~a~~~----g~~~~~~~~----~~ 190 (364)
T PLN02651 123 DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQP---VEEIGELCREK-KVLFHTDAAQAV----GKIPVDVDD----LG 190 (364)
T ss_pred CCcCCHHHHHHhcCCCcEEEEEECCCCCceeccc---HHHHHHHHHHc-CCEEEEEcchhh----CCcccCccc----CC
Confidence 4568999999999989999999999999999999 99999999999 999999999985 322233322 34
Q ss_pred ceEEEeccccccccccceeEEEEcChhHHHHHHhhh-------hccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 246 (352)
.++++.|.+|++| ..++|+++.+++....+.... ....++++.....++.++++.. .+..+++.++.+
T Consensus 191 ~D~~~~s~hK~~g--p~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~---~~~~~~i~~~~~ 265 (364)
T PLN02651 191 VDLMSISGHKIYG--PKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELA---MKEMDYDEKHMK 265 (364)
T ss_pred CCEEEechhhhCC--CCceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHH---HHhHHHHHHHHH
Confidence 5699999999744 346899988876554432211 1234568888888888888762 334577788889
Q ss_pred HHHHHHHHHhcc-cCCceecCCC-----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC---
Q 018665 247 ERRDFLVKSFGE-LEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--- 317 (352)
Q Consensus 247 ~~~~~l~~~l~~-~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--- 317 (352)
+..+++.+.|++ +++++++.+. ....+.+.+++. ++.++.+.|.+ |.+..|..|..
T Consensus 266 ~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~L~~---i~v~~g~~c~~~~~ 330 (364)
T PLN02651 266 ALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYV------------EGESLLMGLKE---VAVSSGSACTSASL 330 (364)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCC------------CHHHHHHHhCC---EEEEchhhcCCCCC
Confidence 999999999985 5788887641 122455556543 78889888753 88888876633
Q ss_pred ----------------CCeEEEEeec--CHHHHH
Q 018665 318 ----------------DTCIRISYAA--SLTTLQ 333 (352)
Q Consensus 318 ----------------~~~iRi~~~~--~~~~l~ 333 (352)
.+.+|+|++. |++||+
T Consensus 331 ~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 331 EPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred CcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 2689999998 778764
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=204.46 Aligned_cols=218 Identities=12% Similarity=0.167 Sum_probs=169.5
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIAD 81 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g 81 (352)
+.++..+++ +++|++.+ .++.++++|+++|+..++.+++++||+|+++.|.|..+... ++..|
T Consensus 62 ~~p~~~~Le------~~iA~~~g-------~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G 128 (400)
T PRK06234 62 GNPTSTEVE------NKLALLEG-------GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYG 128 (400)
T ss_pred CCccHHHHH------HHHHHHhC-------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCC
Confidence 677888999 99999985 35788999999999999999999999999999999876643 46789
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-CCEEEEecccccccccCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~~livD~~~~~~~~~~~ 160 (352)
.+++.++.. |++++++++++++++|++++|+||+|.+.+ +++|.++|+++ +|+++|+|++|+...+.
T Consensus 129 ~~v~~vd~~-------d~e~l~~~i~~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~-- 196 (400)
T PRK06234 129 VEVTFVDTS-------NLEEVRNALKANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ-- 196 (400)
T ss_pred eEEEEECCC-------CHHHHHHHhccCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC--
Confidence 999998752 789999999889999999999999999999 88999999884 28999999998764321
Q ss_pred CccccccCCCCCCceEEEeccccccccccce-eEEEEcChhHHHHHHhh--hhccccCCChHHHHHHHHHhcccCCChHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~-~g~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
.++ ..+.++++.|++|.++.+|.+ .||+++++++++.++.. ....+...+++....+...++.
T Consensus 197 --~~l-----~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~t------- 262 (400)
T PRK06234 197 --RPL-----QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT------- 262 (400)
T ss_pred --Cch-----hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-------
Confidence 111 124559999999999867765 59999999988877643 2234455666666655555543
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCc
Q 018665 238 VSKMVKAFRERRDFLVKSFGELEGV 262 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~~g~ 262 (352)
+..+.++..++...+.+.|++.|.+
T Consensus 263 l~~r~~~~~~na~~~a~~L~~~~~V 287 (400)
T PRK06234 263 LQIRMEKHCKNAMKVAKFLESHPAV 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 3444555566777788888776554
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-26 Score=206.88 Aligned_cols=277 Identities=12% Similarity=0.175 Sum_probs=199.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--------CCCCEEEecCCCCCChHH-HHHhcC------------CeEEEecccCCCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--------SPGDEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRISEN 94 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--------~~~~~vl~~~~~~~~~~~-~~~~~g------------~~v~~i~~~~~~~ 94 (352)
.+.+++++||++|+..+++... ...++|+..+..|++... +....+ .++..++.
T Consensus 97 ~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 171 (403)
T PRK05093 97 AERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF----- 171 (403)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-----
Confidence 4699999999999999998642 123567777777776543 322211 11222221
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccC--CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCC
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSV--YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 172 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~--~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
.|++++++.+.+++++|+++ |.||+|.. .+.+.+++|+++|++| |+++|+||+|+++.++|.. .+.......+
T Consensus 172 --~d~~~l~~~l~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~-~~~~~~~~~p 246 (403)
T PRK05093 172 --NDLAAVKAVIDDHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQH-NALLIFDEVQTGMGRTGDL-FAYMHYGVTP 246 (403)
T ss_pred --CCHHHHHHHhcCCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCccc-hhhhhcCCCC
Confidence 27899999998788888877 66666544 4789999999999999 9999999999988777642 2211111111
Q ss_pred CceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 173 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 173 ~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
+ +.|+||.++ +|+|+||+++++++++.+.......+++.+++.|.++.++++.. ...+..+.++++.+++
T Consensus 247 d----i~s~sK~l~-~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~-----~~~~~~~~~~~~~~~l 316 (403)
T PRK05093 247 D----ILTSAKALG-GGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDII-----NTPEVLEGVKARRQRF 316 (403)
T ss_pred C----EEEeccccc-CCcceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-----hhccHHHHHHHHHHHH
Confidence 2 678999999 89999999999999988876545556778999999999988641 1234557788888888
Q ss_pred HHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--
Q 018665 253 VKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-- 327 (352)
Q Consensus 253 ~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-- 327 (352)
.+.|+++. ++....+..|.++|+.++.... ..+.++++.|+++ ||.+.+++ .+++|++++.
T Consensus 317 ~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~---------~~~~~~~~~l~~~-Gv~v~~~g----~~~lRl~~~~~~ 382 (403)
T PRK05093 317 VDGLQKINQKYGVFSEIRGMGLLIGAELKPQYK---------GRARDFLNAAAEE-GVMVLVAG----PDVLRFAPSLVI 382 (403)
T ss_pred HHHHHHHHhhCCCeEeEeeCceEEEEEecCcch---------hHHHHHHHHHHHC-CeEEecCC----CCEEEEeCCCCC
Confidence 88888751 1212233568889988864210 0467899998876 89988742 5799997665
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 018665 328 SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 328 ~~~~l~~~~~~l~~~~~~~ 346 (352)
+++++++++++|++++.++
T Consensus 383 ~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 383 EEADIDEGLARFEKAVAKV 401 (403)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 8899999999999998653
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-26 Score=206.35 Aligned_cols=281 Identities=18% Similarity=0.249 Sum_probs=220.0
Q ss_pred hhHHHHHHHHhcCCCCCC-CcEEEeCChHHHHHHHHHHh---cCCCCEEEecCCCCCChH----HHHHhcCCeEEEeccc
Q 018665 19 FVQQFVINLKENGLSYTP-DQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTR 90 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l---~~~~~~vl~~~~~~~~~~----~~~~~~g~~v~~i~~~ 90 (352)
..+.++++++ +++ ++|++++|+|++++.++.++ .+++++|++.+..|++.. ...+..|.++..++.+
T Consensus 48 ~r~~la~~lg-----~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~ 122 (371)
T PF00266_consen 48 AREALAKLLG-----APPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD 122 (371)
T ss_dssp HHHHHHHHHT-----SSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG
T ss_pred HHHHHHHhcC-----Cccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 3388999987 666 89999999999999999998 789999999999998877 3444779999999987
Q ss_pred CCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCC
Q 018665 91 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 170 (352)
Q Consensus 91 ~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~ 170 (352)
.+. .+|+++++++++++++++++++.+|.+|...| +++|.++|+++ |+++++|.+++. |..+..+..
T Consensus 123 ~~~--~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~p---i~~I~~~~~~~-~~~~~vD~~~~~----g~~~id~~~--- 189 (371)
T PF00266_consen 123 PGG--SLDLEDLEEALNPDTRLVSISHVENSTGVRNP---IEEIAKLAHEY-GALLVVDAAQSA----GCVPIDLDE--- 189 (371)
T ss_dssp TTS--SCSHHHHHHHHHTTESEEEEESBETTTTBBSS---HHHHHHHHHHT-TSEEEEE-TTTT----TTSS--TTT---
T ss_pred ccc--hhhhhhhhhhhccccceEEeecccccccEEee---eceehhhhhcc-CCceeEechhcc----ccccccccc---
Confidence 433 58999999999999999999999999999999 99999999999 999999999985 332333332
Q ss_pred CCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhh---------------------ccccCCChHHHHHHHHHhc
Q 018665 171 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS---------------------QFTSGASSISQKAGVAALG 229 (352)
Q Consensus 171 ~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~ 229 (352)
.+.+++++|.+| ++ ++.++|+++.+++.+++++.... +...+++.....++..+++
T Consensus 190 -~~~D~~~~s~~K-l~-gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~ 266 (371)
T PF00266_consen 190 -LGADFLVFSSHK-LG-GPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALK 266 (371)
T ss_dssp -TTESEEEEESTS-TT-SSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHH
T ss_pred -cccceeeecccc-cC-CCCchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHh
Confidence 345589999999 64 44568999999998888742211 1123577777777777776
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC----CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHcc
Q 018665 230 LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 305 (352)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (352)
.- ....++++.++..++.+++.+.|++++++.++.+ ..+..+.+.+++. +..++.+.|.++
T Consensus 267 ~~--~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~L~~~- 331 (371)
T PF00266_consen 267 LL--EEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS------------DADDVVKYLEER- 331 (371)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS------------SHHHHHHHHHHH-
T ss_pred hh--hccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC------------CHHHHHHHHhhc-
Confidence 52 2456788888999999999999999988888543 3344466666554 789999999988
Q ss_pred CEEeccCCCCC--------CCCeEEEEeec--CHHHHHHH
Q 018665 306 QVALVPGDAFG--------DDTCIRISYAA--SLTTLQAA 335 (352)
Q Consensus 306 gi~i~~g~~~~--------~~~~iRi~~~~--~~~~l~~~ 335 (352)
||.+..|..+. ..+.+|+|++. +++|++++
T Consensus 332 ~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 332 GIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred CEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 99999977665 24899999998 88999875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=202.98 Aligned_cols=286 Identities=14% Similarity=0.154 Sum_probs=201.7
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIAD 81 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g 81 (352)
+++...+++ +.+|++++ .+..+++++|++++..++.+++++||+|+++.+.|......+ +..|
T Consensus 59 ~~pt~~~Le------~~lA~l~G-------~~~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~g 125 (386)
T PRK06767 59 GNPTVKLFE------ERMAVLEG-------GEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFM 125 (386)
T ss_pred CCcchHHHH------HHHHHHhC-------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcC
Confidence 556667788 99999986 334566667778999999999999999999999888766544 3456
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+++..++. .|++++++++++++++|++++|+||+|.+.+ +++|.++|+++ |+++|+|++|+....
T Consensus 126 i~~~~~~~-------~d~~~l~~~i~~~tklV~lesp~NptG~v~d---l~~I~~la~~~-g~~vivD~a~a~~~~---- 190 (386)
T PRK06767 126 ITHSFCDM-------ETEADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRVAKRN-GLLVIVDNTFCSPYL---- 190 (386)
T ss_pred eEEEEeCC-------CCHHHHHHhhCcCceEEEEeCCCCCCceecC---HHHHHHHHHHc-CCEEEEECCCccccc----
Confidence 66665543 3789999999889999999999999999999 89999999999 999999999864211
Q ss_pred ccccccCCCCCCceEEEecccccccccccee-EEEEcChhHHHHHHh-hhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNK-IQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~-g~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
..++ ..+.++++.|++|.++.+|.++ |+++++++.++++.+ .........+++.+.++...++ .+.
T Consensus 191 ~~pl-----~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~-------tl~ 258 (386)
T PRK06767 191 QRPL-----ELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLK-------TLA 258 (386)
T ss_pred CCch-----hcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC-------cHH
Confidence 1121 1234588999999997677774 889999888777543 3333333456655554444443 345
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecC-C----------CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSE-P----------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~-~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 308 (352)
.+.++.+++...+.+.|+++|++..+. | ..|-++.+++.+.. ++..++.+.|.. .++.
T Consensus 259 ~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~----------~~~~~f~~~l~~-~~~~ 327 (386)
T PRK06767 259 VRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGK----------EETQAFINDLHF-ITIA 327 (386)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCH----------HHHHHHHHhCCc-cEEe
Confidence 566777889999999999998887432 2 12334556664311 146678877753 4666
Q ss_pred eccCCCCC-----------------------CCCeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 309 LVPGDAFG-----------------------DDTCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 309 i~~g~~~~-----------------------~~~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
+.-|+... .++.+|+|++. |+.+.+++.|..++.
T Consensus 328 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl--E~~~dl~~dl~~al~ 384 (386)
T PRK06767 328 VSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL--ESWEDIVSDLEQALK 384 (386)
T ss_pred cCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHh
Confidence 65554221 13579999999 345666666666664
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-25 Score=201.04 Aligned_cols=210 Identities=15% Similarity=0.186 Sum_probs=163.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.+|++++ .+++++++|+++|+..++.+++++||+|+++.+.|.+... .++..|.+++.++.+
T Consensus 68 ~~la~l~g-------~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~------ 134 (390)
T PRK08133 68 ERLAALEG-------AEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT------ 134 (390)
T ss_pred HHHHHHhC-------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC------
Confidence 99999874 4578999999999999999999999999999999987654 456789999999763
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
|++++++++++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|+++..... ..++ ..+.++
T Consensus 135 -d~~~l~~~i~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~-gi~livD~t~~~~~~----~~pl-----~~g~Di 200 (390)
T PRK08133 135 -DLDAWRAAVRPNTKLFFLETPSNPLTELAD---IAALAEIAHAA-GALLVVDNCFCTPAL----QQPL-----KLGADV 200 (390)
T ss_pred -CHHHHHHhcCcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHc-CCEEEEECCCccccc----CCch-----hhCCcE
Confidence 789999999999999999999999999999 89999999999 999999999864321 1111 123458
Q ss_pred EEecccccccccccee-EEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 255 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 255 (352)
++.|+||.++.+|.++ |+++.+++.++.+..........++++.+..+... .+.+..+.++..+++..+.+.
T Consensus 201 vv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~g-------l~tl~~R~~~~~~~a~~la~~ 273 (390)
T PRK08133 201 VIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKG-------LETLSLRMEAHSANALALAEW 273 (390)
T ss_pred EEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcc-------cchHHHHHHHHHHHHHHHHHH
Confidence 8999999998678776 66778888877776655555444555544333322 235666666677788889999
Q ss_pred hcccCCcee
Q 018665 256 FGELEGVKM 264 (352)
Q Consensus 256 l~~~~g~~~ 264 (352)
|++.|++..
T Consensus 274 L~~~p~v~~ 282 (390)
T PRK08133 274 LEAHPGVER 282 (390)
T ss_pred HHhCCCeeE
Confidence 988877643
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=206.96 Aligned_cols=295 Identities=20% Similarity=0.237 Sum_probs=205.5
Q ss_pred CCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHH-HHHHHHHHhcCC--CCEEEecCCCCCChHHHHHhcC-
Q 018665 7 SQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQ-SILQAVLAVCSP--GDEVIIPAPFWVSYPEMARIAD- 81 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~-a~~~~~~~l~~~--~~~vl~~~~~~~~~~~~~~~~g- 81 (352)
..|..+++ +.+++++. ..|. +.+++.+++++++ +...+..++..+ +|+|+++++.|.++...++..+
T Consensus 59 ~~g~~~~~------~~~~~~la~~~g~--~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~ 130 (398)
T cd00613 59 SQGRLQAL------FELQTMLCELTGM--DVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGE 130 (398)
T ss_pred hhhHHHHH------HHHHHHHHHHHCC--CccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcc
Confidence 67888888 88888887 5553 3446777775554 444444455555 8999999999999998888777
Q ss_pred ---CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 82 ---ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 82 ---~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
.+++.++.++ ++.+|++++++.+++++++|++++|+ ++|.+.+ .+++|+++|+++ |+++|+|++++....
T Consensus 131 ~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~--~l~~i~~la~~~-g~~livD~~~~~~~~- 203 (398)
T cd00613 131 PLGIEVVEVPSDE--GGTVDLEALKEEVSEEVAALMVQYPN-TLGVFED--LIKEIADIAHSA-GALVYVDGDNLNLTG- 203 (398)
T ss_pred cCCcEEEEeccCC--CCCcCHHHHHHhcCCCeEEEEEECCC-CCceecc--hHHHHHHHHHhc-CCEEEEEeccccccC-
Confidence 8999998863 34689999999998899999999885 8999954 359999999999 999999998754211
Q ss_pred CCCccccccCCCCCCceEEEeccccccccc----cceeEEEEcChhHHHHHHhh--------------------------
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMT----GWRLGYIAGPKHFVAACNKI-------------------------- 208 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----g~~~g~l~~~~~~~~~~~~~-------------------------- 208 (352)
.... ...+.++++.|++|++ .+ |++.|+++.++++++.+...
T Consensus 204 ---~~~~----~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 275 (398)
T cd00613 204 ---LKPP----GEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIR 275 (398)
T ss_pred ---CCCh----HHcCCCEEEeeccccC-CCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcc
Confidence 0111 1134569999999998 34 78899999998887764211
Q ss_pred ---hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE--EEeecCCccCC
Q 018665 209 ---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGS 283 (352)
Q Consensus 209 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~--~~~~~~~~~~~ 283 (352)
......+.+.....++..++.. ...+.++++.++++++++++.+.|+++++... +.+.++ ++++++...+
T Consensus 276 ~e~~~~~~~~~~~~~~~~a~~~l~~--~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~~v~~~~~~~~~- 350 (398)
T cd00613 276 REKATSNICTGQALLALMAAMYIVY--LGPEGLKEIAERAHLNANYLAKRLKEVGGVLP--FNGPFFHEFVLRLPPLYG- 350 (398)
T ss_pred cccccccceecHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--CCCCeeEEEEEEcCCcch-
Confidence 0011122233343334333332 13567888899999999999999998744431 222222 4566653100
Q ss_pred cccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHH
Q 018665 284 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERI 339 (352)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l 339 (352)
.++.++++.|.++ ||.+.... ...++.+|++++. +++|++++++.|
T Consensus 351 --------~~~~~~~~~L~~~-gi~~~~~~-~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 351 --------IRAEDLAKALIDG-GFHAPTMY-LPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred --------HHHHHHHHhhhhc-Cccccccc-cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 1577899998876 88764321 1235789999988 999999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=208.34 Aligned_cols=286 Identities=17% Similarity=0.246 Sum_probs=205.5
Q ss_pred chhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEecCCCCCChHHHHHh----cCCeEEEecccC
Q 018665 17 WSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRI 91 (352)
Q Consensus 17 ~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~~~~vl~~~~~~~~~~~~~~~----~g~~v~~i~~~~ 91 (352)
+++.+.++++++ ++.+++.+++|+++++..++.++. +++++|+++++.|.++...++. .|.+++.+++++
T Consensus 115 ~e~~~~la~l~g-----~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~ 189 (447)
T PRK00451 115 FEYQTMICELTG-----MDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYED 189 (447)
T ss_pred HHHHHHHHHHhC-----CCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCC
Confidence 334455666665 566789999999999998888874 6889999999999988877664 699999999874
Q ss_pred CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEe--cccccccccCCCCccccccCC
Q 018665 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS--DEIYEHIIYAPATHTSFASLP 169 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~liv--D~~~~~~~~~~~~~~~~~~~~ 169 (352)
+ .+|++++++++++++++|++++| |+||.+.| +++|.++|+++ |+++++ |.+..+ .. . .+
T Consensus 190 --~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~-~~~~iv~~d~~~~g-----~~-~----~~ 251 (447)
T PRK00451 190 --G-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIED---LEEIAEIAHAG-GALFIVGVDPVSLG-----LL-K----PP 251 (447)
T ss_pred --C-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCC---HHHHHHHHHHC-CCEEEEEcChHHhc-----cC-C----Cc
Confidence 3 68999999999989999999999 88999998 99999999999 999988 433211 10 0 11
Q ss_pred CCCCceEEEe---ccccccccccceeEEEEcChhHHHHHH----------------------------hhhhccccCCCh
Q 018665 170 GMWERTLTVN---GFSKAFAMTGWRLGYIAGPKHFVAACN----------------------------KIQSQFTSGASS 218 (352)
Q Consensus 170 ~~~~~~i~~~---s~sK~~g~~g~~~g~l~~~~~~~~~~~----------------------------~~~~~~~~~~~~ 218 (352)
.+.+.++++. +++|.++++|+++|++++++++++.+. ......+.+.+.
T Consensus 252 ~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (447)
T PRK00451 252 GEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQ 331 (447)
T ss_pred ccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccH
Confidence 2245557776 455666667889999999998888741 111111112222
Q ss_pred HHH-HHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEE--eecCCccCCcccCCCCCCChH
Q 018665 219 ISQ-KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSE 295 (352)
Q Consensus 219 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~ 295 (352)
..+ .++..++.. ...++++++.+++.++++++.+.|++++++++. .+.++.+ ++++. +..
T Consensus 332 ~~~~~aaa~~l~~--~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~~-------------~~~ 394 (447)
T PRK00451 332 ALNALAAAIYMSL--LGPEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLPK-------------PAE 394 (447)
T ss_pred HHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecCC-------------CHH
Confidence 222 223223321 125778999999999999999999998788876 3344433 44431 578
Q ss_pred HHHHHHHHccCEE-eccCCCCC--CCCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 296 SLCRYLLDKAQVA-LVPGDAFG--DDTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 296 ~~~~~l~~~~gi~-i~~g~~~~--~~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
++.++|.++ ||. ..++..+. ..+++|++++. ++++++++++.|++++
T Consensus 395 ~~~~~L~~~-gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 395 EVNEALLEK-GILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred HHHHHHHhc-CCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 999999977 554 23344333 24699999974 8999999999998765
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-25 Score=198.72 Aligned_cols=217 Identities=12% Similarity=0.170 Sum_probs=164.4
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCC----ChHHHHHhcCC
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV----SYPEMARIADA 82 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~----~~~~~~~~~g~ 82 (352)
++...+++ +++|++++ ....+++ +++++++..++.+++++||+|+++.+.|. .+...++..|.
T Consensus 44 ~p~~~~L~------~~lA~l~g------~~~~v~~-~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~ 110 (376)
T PRK06460 44 NPTVLELT------KKIVELEN------AEMGVAF-SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGV 110 (376)
T ss_pred CccHHHHH------HHHHHHhC------CCcEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCc
Confidence 45566777 99999986 2344544 66679999999999999999999987654 34567788999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
++..++.+ +.+.+++.+++++++|++++|+||+|.++| +++|+++|+++ |+++|+|++|+...
T Consensus 111 ~v~~~~~~-------~~~~l~~~~~~~tklV~l~sp~NPtG~v~d---~~~I~~la~~~-g~~vivDea~~~~~------ 173 (376)
T PRK06460 111 NVDASNPG-------SDNIIEKAKSKRYDVVFVENITNPLLRVVD---ITELSKVCKEN-GSILIVDATFSTPI------ 173 (376)
T ss_pred EEEEECCC-------CHHHHHHhcCCCceEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCcCccc------
Confidence 99888753 224455555678999999999999999999 78899999999 99999999986421
Q ss_pred cccccCCCCCCceEEEeccccccc-cccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g-~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
....+ ..+.++++.|+||.++ ..+.+.|++++++++++.+......++.+.++. .+..++.. .++++.+
T Consensus 174 -~~~~l--~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~---~a~~~l~~----~~~l~~r 243 (376)
T PRK06460 174 -NQKPL--ELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPH---AAYLTLRG----IKTLKIR 243 (376)
T ss_pred -cCChh--hcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCCCHH---HHHHHHhc----hhhHHHH
Confidence 11111 1345699999999985 224679999999999998887766665555543 23333442 5778888
Q ss_pred HHHHHHHHHHHHHHhcccCCce
Q 018665 242 VKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
.++..++++.+.+.|++.|.+.
T Consensus 244 ~~~~~~n~~~l~~~L~~~p~v~ 265 (376)
T PRK06460 244 MDVINRNAEQIAEFLEGHPKVV 265 (376)
T ss_pred HHHHHHHHHHHHHHHHcCCCcc
Confidence 8899999999999999876653
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-25 Score=198.33 Aligned_cols=218 Identities=14% Similarity=0.180 Sum_probs=172.2
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIAD 81 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g 81 (352)
+.+...+++ +.++++.+ .+..++++|+++|+..++.+++++||+|+++.+.|.+.... ++..|
T Consensus 38 ~~p~~~~le------~~la~l~g-------~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g 104 (369)
T cd00614 38 GNPTVDALE------KKLAALEG-------GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLG 104 (369)
T ss_pred CChhHHHHH------HHHHHHHC-------CCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcC
Confidence 345556677 99999875 45778888999999999999999999999999999887643 45788
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.++..++.+ |++++++++++++++|++++|+||+|.+.| +++|+++|+++ |+++|+|++++...+
T Consensus 105 ~~~~~v~~~-------d~~~l~~~i~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~-g~~livD~t~~~~~~---- 169 (369)
T cd00614 105 IEVTFVDPD-------DPEALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAELAHEH-GALLVVDNTFATPYL---- 169 (369)
T ss_pred eEEEEeCCC-------CHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcchhc----
Confidence 998888753 689999999889999999999999999999 99999999999 999999999875322
Q ss_pred ccccccCCCCCCceEEEecccccccccc-ceeEEEEcCh-hHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
..++ ..+.++++.|++|.+|.+| .+.|++++++ ++++++......++..++++...++...++. +.
T Consensus 170 ~~~~-----~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t-------l~ 237 (369)
T cd00614 170 QRPL-----ELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKT-------LP 237 (369)
T ss_pred CChh-----hhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC-------HH
Confidence 1111 1345699999999997454 7899999987 8888888776666666777766655555432 44
Q ss_pred HHHHHHHHHHHHHHHHhcccCCce
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
.+.++..++...+.+.|++.|++.
T Consensus 238 ~r~~~~~~na~~la~~L~~~~~v~ 261 (369)
T cd00614 238 LRMERHSENALKVAEFLEKHPKVE 261 (369)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcc
Confidence 556677888888999999887654
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-25 Score=198.66 Aligned_cols=217 Identities=16% Similarity=0.180 Sum_probs=168.5
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCC
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADA 82 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~ 82 (352)
.+...+++ +.+|++++ .+..++++++++|+..++.+++++||+|+++.++|.++.. .++..|+
T Consensus 63 ~p~~~~le------~~lA~l~g-------~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi 129 (398)
T PRK08249 63 NPTVQAFE------EKVRILEG-------AEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGV 129 (398)
T ss_pred ChHHHHHH------HHHHHHhC-------CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCe
Confidence 33445666 99999985 4566788888999999999999999999999999987653 3557899
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
++..++. .|++++++++++++++|++++|+||+|.++| +++|.++|+++ |+++|+|++|+.....
T Consensus 130 ~v~~vd~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~-gi~livD~t~a~~~~~---- 194 (398)
T PRK08249 130 DVTLCET-------GDHEQIEAEIAKGCDLLYLETPTNPTLKIVD---IERLAAAAKKV-GALVVVDNTFATPINQ---- 194 (398)
T ss_pred EEEEcCC-------CCHHHHHHhcCCCCeEEEEECCCCCCCccCC---HHHHHHHHHHc-CCEEEEECCcCccccC----
Confidence 8887763 4899999999989999999999999999999 88999999999 9999999998853211
Q ss_pred cccccCCCCCCceEEEecccccccccccee-EEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
.++ . .+..+++.|++|.+|..|.++ |++++++++++.+.......+...+++.+..+.+.++. +...
T Consensus 195 ~~l-~----~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t-------L~~R 262 (398)
T PRK08249 195 NPL-A----LGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKT-------LKLR 262 (398)
T ss_pred Cch-h----hCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcch-------HHHH
Confidence 111 1 233488899999997556554 77778888988888776666666777777666555543 4555
Q ss_pred HHHHHHHHHHHHHHhcccCCce
Q 018665 242 VKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
.++..+++..+.+.|++.|.+.
T Consensus 263 ~~~~~~na~~la~~L~~~p~v~ 284 (398)
T PRK08249 263 VRQQQESAMALAKYLQTHPKVE 284 (398)
T ss_pred HHHHHHHHHHHHHHHHcCCCee
Confidence 5667788888888888876654
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=200.42 Aligned_cols=272 Identities=20% Similarity=0.211 Sum_probs=190.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCC---------------EEEecCCCCCCh----HHHHHhcCCeEEEecccCCCCcc
Q 018665 36 PDQILVSNGAKQSILQAVLAVCSPGD---------------EVIIPAPFWVSY----PEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~~~~---------------~vl~~~~~~~~~----~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
.+++++++|+|+++..++.+++++|| .|+++.|.|..+ ...+...|.++++++.+ +.
T Consensus 60 ~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~----~~ 135 (363)
T TIGR01437 60 VEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA----NE 135 (363)
T ss_pred CCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC----CC
Confidence 45789999999999999999998887 899999777655 46778899999999763 34
Q ss_pred cCHHHHHhhccCCeeEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 97 LDPKVLESKLTEKSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~-i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
+|++.+++++++++++++ +++++||+|.+.| +++|.++|+++ |+++|+|++|+.- ....... +.+
T Consensus 136 ~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~-gi~vivD~a~~~~------~~~~~~~----g~D 201 (363)
T TIGR01437 136 CSAEQLEAAITEKTAAILYIKSHHCVQKSMLS---VEDAAQVAQEH-NLPLIVDAAAEED------LQKYYRL----GAD 201 (363)
T ss_pred CCHHHHHHhcChhceEEEEEecCCCCcCCcCC---HHHHHHHHHHc-CCeEEEECCCCCc------hHHHHHc----CCC
Confidence 899999999999998766 5678999999999 88999999999 9999999998620 0111111 234
Q ss_pred EEEeccccccccccceeEEEEcChhHHHHHHhhhhcc--ccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
+++.|.+|.+ .|++.|+++.++++++.+....... ..........++.++++.. .+...+..+...++++.+.
T Consensus 202 ~~~~S~~K~l--~gp~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~---~~~~~~~~~~~~~~~~~l~ 276 (363)
T TIGR01437 202 LVIYSGAKAI--EGPTSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQY---LSTGKESGAEMVAKLTPFI 276 (363)
T ss_pred EEEEeCCccc--CCCceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHH---HccCcccHHHHHHHHHHHH
Confidence 8889999987 4667999999888888764322110 0111112233333444321 1112233334445677899
Q ss_pred HHhcccCCceecCCC--Cc-----eEEEeecCCccCCcccCCCCCCChHHHHHHHHHccC--EEeccCCCCCCCCeEEEE
Q 018665 254 KSFGELEGVKMSEPQ--GA-----FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ--VALVPGDAFGDDTCIRIS 324 (352)
Q Consensus 254 ~~l~~~~g~~~~~~~--~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--i~i~~g~~~~~~~~iRi~ 324 (352)
+.|++++|+++..+. .+ +.+.++.... + .+..++.+.|.++ + |.+++ .+...+.+|++
T Consensus 277 ~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~------g----~~~~~l~~~L~~~-~~~I~~r~--~~~~~~~~~l~ 343 (363)
T TIGR01437 277 EALNTLKGVSASIVQDEAGRDIARAEIRFDESEL------G----MTAADVVQALRQG-EPAIYTRG--YKANEGIIEID 343 (363)
T ss_pred HHHhcCCCeEEEEecCCCCCcCceEEEEEeccCC------C----CCHHHHHHHHhcC-CCCEEEee--eeecCCeEEEE
Confidence 999999998887322 11 1122232110 1 1789999998754 5 55544 45667899999
Q ss_pred eec-CHHHHHHHHHHHHHHH
Q 018665 325 YAA-SLTTLQAAVERIKKGL 343 (352)
Q Consensus 325 ~~~-~~~~l~~~~~~l~~~~ 343 (352)
+.. +++|+++++++|++++
T Consensus 344 ~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 344 PRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred eecCCHHHHHHHHHHHHHhC
Confidence 988 8999999999998763
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=196.96 Aligned_cols=218 Identities=13% Similarity=0.135 Sum_probs=172.5
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH----hcC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IAD 81 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~----~~g 81 (352)
+++...+++ +.+|++.+ .+++++++|+++++..++.+++++||+|++++|+|.+....+. ..+
T Consensus 50 ~~pt~~~L~------~~lA~l~g-------~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~g 116 (386)
T PRK08045 50 GNPTRDVVQ------RALAELEG-------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_pred CCccHHHHH------HHHHHHhC-------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCC
Confidence 445566777 99999975 3579999999999999999999999999999999986554333 345
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.++..++. .|++++++.+++++++|++++|+||||.++| +++|.++|+++ |+++|+|++|.....
T Consensus 117 i~v~~vd~-------~d~e~l~~~l~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~-g~~vivDeay~~~~~---- 181 (386)
T PRK08045 117 YRVLFVDQ-------GDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREA-GAVSVVDNTFLSPAL---- 181 (386)
T ss_pred eEEEEeCC-------CCHHHHHHhcccCCeEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCCcccc----
Confidence 56666541 4889999999889999999999999999999 88999999999 999999999875321
Q ss_pred ccccccCCCCCCceEEEeccccccc-cccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g-~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
..++ . .+..+++.|++|.++ .++...|++++ ++++++++.......+...+++.+..+...+++ +.
T Consensus 182 ~~pl-~----~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t-------l~ 249 (386)
T PRK08045 182 QNPL-A----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LV 249 (386)
T ss_pred CCch-h----hCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc-------HH
Confidence 1122 1 233499999999994 45567898876 577888887776777777899888888888764 66
Q ss_pred HHHHHHHHHHHHHHHHhcccCCce
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
.+.++..+++..+.+.|++.|.+.
T Consensus 250 ~R~~~~~~na~~la~~L~~~p~v~ 273 (386)
T PRK08045 250 PRMELAQRNAQAIVKYLQTQPLVK 273 (386)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEe
Confidence 667777888888999998877654
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=193.04 Aligned_cols=294 Identities=18% Similarity=0.185 Sum_probs=228.4
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCe
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT 83 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~ 83 (352)
+|...-+.+|+ +.+|+|++ .+..++.+++-.|+..++.+|++++|.|+...-.|-+..+.++..+.+
T Consensus 80 ~G~~~~h~~LE------~~lA~f~g-------~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~a~ 146 (388)
T COG0156 80 SGTSDLHVELE------EELADFLG-------AEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAE 146 (388)
T ss_pred cCCcHHHHHHH------HHHHHHhC-------CCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCCCc
Confidence 34455556677 99999985 667777777788899999999999999999999999999999999999
Q ss_pred EEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 157 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~ 157 (352)
++.+.- .|++.|++.+.+ +.+.|++....+..|.+.| +++|++++++| +.+++|||+|+...+
T Consensus 147 ~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp---L~~l~~L~~ky-~a~L~VDEAHa~Gv~ 215 (388)
T COG0156 147 VRRFKH-------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP---LPELVELAEKY-GALLYVDEAHAVGVL 215 (388)
T ss_pred EEEecC-------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC---HHHHHHHHHHh-CcEEEEEcccccccc
Confidence 999974 388999998864 2577888889999999999 99999999999 999999999997777
Q ss_pred CCCCccccccCCCC-CCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcc--ccCCChHHHHHHHHHhcccCCC
Q 018665 158 APATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 158 ~~~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
++.+........-. .+++|+++|++|++|..| ||+.++..+++.+....+.+ +.+.++....++.++++.
T Consensus 216 G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~---- 288 (388)
T COG0156 216 GPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRI---- 288 (388)
T ss_pred CCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHH----
Confidence 65443333333222 355799999999998777 99999999999988765444 445666666677777775
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~ 314 (352)
.....+.+.++.++..++++.++.. ++.+......+ +.+.+.+.. .+..+.+.|+++ ||.+.+-..
T Consensus 289 l~~~~~~r~~L~~~~~~~~~~~~~~-~~~~~~s~s~I-~pv~~gd~~-----------~a~~~s~~l~~~-Gi~v~~i~~ 354 (388)
T COG0156 289 LEEGPERRERLQELAAFFRSLLKAL-GLVLLPSESPI-IPVILGDEE-----------RALEASRALLEE-GIYVSAIRP 354 (388)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHhc-CCccCCCCCCe-eeeEeCCHH-----------HHHHHHHHHHHC-CeeEeeecC
Confidence 4455677788888888888666655 66664433443 444444321 578899999988 999877655
Q ss_pred CCCC---CeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 315 FGDD---TCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 315 ~~~~---~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
..-+ ..+|++++. +++||+++++.|.++
T Consensus 355 PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 355 PTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred CCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 4433 579999987 999999999998875
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-25 Score=200.72 Aligned_cols=288 Identities=12% Similarity=0.153 Sum_probs=204.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--------CCCCEEEecCCCCCChHHHHHh-cCCeEE---EecccCC--CCcccCHHH
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--------SPGDEVIIPAPFWVSYPEMARI-ADATPV---ILPTRIS--ENFLLDPKV 101 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--------~~~~~vl~~~~~~~~~~~~~~~-~g~~v~---~i~~~~~--~~~~~d~~~ 101 (352)
.+.+++++||++|++.+++... .+..+|+..+..|++....... .+.... +.++... .-.-.|++.
T Consensus 96 ~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 175 (406)
T PRK12381 96 ADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNS 175 (406)
T ss_pred CCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHH
Confidence 4799999999999999998752 1346789988888887643332 221100 0111100 001137899
Q ss_pred HHhhccCCeeEEEEcCCCCCcccC--CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEe
Q 018665 102 LESKLTEKSRLLILCSPSNPTGSV--YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 179 (352)
Q Consensus 102 l~~~l~~~~~~i~i~~p~nptG~~--~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (352)
+++.+++++++|++ .|.+++|-+ .|.+.+++|.++|++| |+++|+||++.++.++|.. .........++ +.
T Consensus 176 l~~~l~~~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~-~~llI~DEv~tG~gr~G~~-~~~~~~~v~pD----i~ 248 (406)
T PRK12381 176 ASALIDDQTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRH-NALLIFDEVQTGVGRTGEL-YAYMHYGVTPD----VL 248 (406)
T ss_pred HHHhccCCeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEcchhhCCCCCcch-hhhHhhCCCCC----EE
Confidence 99999878877777 577777654 3688999999999999 9999999999988776642 22111111112 46
Q ss_pred ccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc
Q 018665 180 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 259 (352)
Q Consensus 180 s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 259 (352)
+++|.+| +|+++|++++++++++.+.......+++.+++.+.++.++++.. .-++++++++++.+++.+.|+++
T Consensus 249 t~sK~l~-gG~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l-----~~~~~~~~~~~~~~~l~~~L~~l 322 (406)
T PRK12381 249 TTAKALG-GGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELI-----NTPEMLNGVKQRHDWFVERLNTI 322 (406)
T ss_pred Eehhhhh-CCCceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-----hhccHHHHHHHHHHHHHHHHHHH
Confidence 8999998 89999999999999998876555566788999999999988751 12356777888888888888765
Q ss_pred -CCceec--CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHH
Q 018665 260 -EGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQA 334 (352)
Q Consensus 260 -~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~ 334 (352)
....+. ....|.++++++++... .....+.+.|.++ ||.+.+. .++++|++++. +++++++
T Consensus 323 ~~~~~~~~~vrg~Gl~~~~~l~~~~~---------~~~~~~~~~l~~~-Gv~v~~~----g~~~lRl~p~~~~t~~~i~~ 388 (406)
T PRK12381 323 NARYGLFSEIRGLGLLIGCVLNAEYA---------GKAKQISQEAAKA-GVMVLIA----GPNVVRFAPALNISEEEITT 388 (406)
T ss_pred HhhCCCEEEEecCeEEEEEEecCchh---------hHHHHHHHHHHHC-CcEEeeC----CCCEEEEeCCccCCHHHHHH
Confidence 112211 22447778888764210 0356788887765 9998764 25799999885 9999999
Q ss_pred HHHHHHHHHhhhCCCC
Q 018665 335 AVERIKKGLLTLRPGV 350 (352)
Q Consensus 335 ~~~~l~~~~~~~~~~~ 350 (352)
++++|+++++++..+.
T Consensus 389 ~~~~l~~~l~~~~~~~ 404 (406)
T PRK12381 389 GLDRFARACERFVSRG 404 (406)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998886643
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=196.95 Aligned_cols=291 Identities=12% Similarity=0.125 Sum_probs=207.8
Q ss_pred HHHHHHHHhcCCCCCCC-cEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChH-HHHHhcCCeEEE--e--cccCC
Q 018665 21 QQFVINLKENGLSYTPD-QILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYP-EMARIADATPVI--L--PTRIS 92 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~-~~~~~~g~~v~~--i--~~~~~ 92 (352)
+.+++.+. ..++ .+++++|+++++..+++... .++++|++.+..|++.. ..+...+.+... + .+...
T Consensus 73 ~~la~~l~-----~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (375)
T PRK04260 73 EEVAQKLI-----GDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHF 147 (375)
T ss_pred HHHHHHHh-----cCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCe
Confidence 77777664 1233 46899999999998888752 34567888888877543 343332221100 0 00000
Q ss_pred C-CcccCHHHHHhhccCCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCC
Q 018665 93 E-NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 170 (352)
Q Consensus 93 ~-~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~ 170 (352)
. ..-.|++.+++.+++++++++++.++|++|... +.+.++++.++|+++ |+++|+||+|.++...+.. .+......
T Consensus 148 ~~~~~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~-~~~~i~De~~~g~g~~g~~-~~~~~~~~ 225 (375)
T PRK04260 148 SYAIFNDLNSVKALVNKNTAAVMLELVQGESGVLPADKDFVKALADYCQET-GILLIVDEVQTGMGRTGKL-YAFEHYGI 225 (375)
T ss_pred EEeCCCCHHHHHHhcCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccch-hhhHhhCC
Confidence 0 001388999998877888999999999999875 467899999999999 9999999999887665532 22111111
Q ss_pred CCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHH
Q 018665 171 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 250 (352)
Q Consensus 171 ~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
.++ +.||||.++ +|+|+|++++++++.+.+.......+++.+++.+.++.++++.... ++..++.++..++.++
T Consensus 226 ~pd----i~t~sK~l~-~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~~~~ 299 (375)
T PRK04260 226 EPD----IFTLAKGLA-NGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLT-AGFLEQALENGNYLQE 299 (375)
T ss_pred CCC----EEEeccccc-CCcceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 122 458999998 8999999999999988876544556677899999999999976322 4556777777777777
Q ss_pred HHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--C
Q 018665 251 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 328 (352)
Q Consensus 251 ~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~ 328 (352)
.+.+.+.+.+.+..+. ..|+++|++++. +..++.+.+.++ ||.+.|+ ..+.+|++++. +
T Consensus 300 ~l~~~~~~~~~~~~~~-~~g~~~~~~~~~-------------~~~~~~~~l~~~-Gi~v~~~----~~~~lR~~~~~~~t 360 (375)
T PRK04260 300 QLQKALQDKETVTTVR-GLGYMIGIETTA-------------DLSQLVEAARDK-GLIVLTA----GTNVIRLLPPLTLT 360 (375)
T ss_pred HHHHHHhhCCCeeEEe-ccceEEEEEecC-------------cHHHHHHHHHhC-CCEEecC----CCCEEEEcCCCccC
Confidence 7777777653333333 378889998843 577899998876 9999775 25789999965 8
Q ss_pred HHHHHHHHHHHHHHH
Q 018665 329 LTTLQAAVERIKKGL 343 (352)
Q Consensus 329 ~~~l~~~~~~l~~~~ 343 (352)
++++++++++|++++
T Consensus 361 ~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 361 KEEIEQGIAILSEVF 375 (375)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998763
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=193.77 Aligned_cols=218 Identities=14% Similarity=0.142 Sum_probs=170.4
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIAD 81 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g 81 (352)
+.+....++ +++|++.+ .+++++++|+++++..++.+++++||+|+++.|+|.+.... ++..|
T Consensus 51 ~npt~~~Le------~~lA~leg-------~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~g 117 (388)
T PRK08861 51 GNPNRGLLE------QTLSELES-------GKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGD 117 (388)
T ss_pred CCchHHHHH------HHHHHHhC-------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCC
Confidence 445566777 99999984 68999999999999999999999999999999999865543 33457
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+++..++. .|++++++++++++++|++++|+||||.++| +++|.++|+++ |+++|+|++|....+
T Consensus 118 i~v~~vd~-------~d~e~l~~~i~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~-gi~vIvDea~~~~~~---- 182 (388)
T PRK08861 118 FKVQFVDQ-------SDAAALDAALAKKPKLILLETPSNPLVRVVD---IAELCQKAKAV-GALVAVDNTFLTPVL---- 182 (388)
T ss_pred eEEEEECC-------CCHHHHHHhcCcCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCcccccc----
Confidence 88888752 3889999999889999999999999999999 88999999999 999999999975321
Q ss_pred ccccccCCCCCCceEEEeccccccccc-cceeEEEEcC-hhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMT-GWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~-g~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
..++ . .+-++++.|.+|.++.+ +...|+++++ +++.++++......+..++++....+...+++ +.
T Consensus 183 ~~pl-~----~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T-------l~ 250 (388)
T PRK08861 183 QKPL-E----LGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRT-------LG 250 (388)
T ss_pred CCCc-c----cCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCC-------HH
Confidence 1121 1 23459999999999633 4567888774 56777777666666777888887776666655 45
Q ss_pred HHHHHHHHHHHHHHHHhcccCCce
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
-+.++..++...+.+.|++.|.+.
T Consensus 251 lR~~~~~~~a~~~a~~L~~~p~v~ 274 (388)
T PRK08861 251 ARMRVHEESAQQILAYLQTQSLVG 274 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCee
Confidence 555666777778888888876653
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=195.78 Aligned_cols=218 Identities=13% Similarity=0.152 Sum_probs=168.0
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIAD 81 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g 81 (352)
+++...+++ +.+|++.+ .+++++++|+++++..++.+++++||+|+++.|+|.++...+ ...+
T Consensus 49 ~~p~~~~le------~~lA~l~g-------~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~ 115 (382)
T TIGR02080 49 GNPTRDLLQ------QALAELEG-------GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC 115 (382)
T ss_pred CCchHHHHH------HHHHHHhC-------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC
Confidence 344556677 99999874 578999999999999999999999999999999998765443 3335
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.++..++. .|++++++++++++++|++++|+||||.+++ +++|.++|+++ |+++|+|++|.....
T Consensus 116 ~~v~~~d~-------~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~-g~~vvvD~a~~~~~~---- 180 (382)
T TIGR02080 116 FRVLFVDQ-------GDEQALRAALAQKPKLVLIETPSNPLLRVVD---IAKICHLAKAV-GAVVVVDNTFLSPAL---- 180 (382)
T ss_pred eEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCccccc----
Confidence 66666541 3789999999889999999999999999999 88999999999 999999999975321
Q ss_pred ccccccCCCCCCceEEEeccccccc-cccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g-~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
..++ .+ +.++++.|++|.++ .++++.|+++. ++++++++.......+...+++....+...++ .+.
T Consensus 181 ~~pl-~~----gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~-------tl~ 248 (382)
T TIGR02080 181 QNPL-AL----GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLR-------TLV 248 (382)
T ss_pred CCch-hh----CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccc-------hHH
Confidence 1121 11 23489999999985 46778999876 67788888777666677788877765544443 344
Q ss_pred HHHHHHHHHHHHHHHHhcccCCce
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
.+.++..++...+.+.|+..|.+.
T Consensus 249 ~R~~~~~~na~~~a~~L~~~p~v~ 272 (382)
T TIGR02080 249 ARMRLQQRNAQAIVEYLQTQPLVK 272 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCee
Confidence 556667788888888888776654
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=195.83 Aligned_cols=217 Identities=14% Similarity=0.192 Sum_probs=167.5
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH----HHHHhcCCe
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADAT 83 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~----~~~~~~g~~ 83 (352)
+...+++ +.++++++ .+.+++++|+++++..++.+++++||+|+++.+.|.+.. ..++..|.+
T Consensus 54 p~~~~le------~~la~l~g-------~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~ 120 (380)
T TIGR01325 54 PTVAAFE------ERIAALEG-------AERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIE 120 (380)
T ss_pred chHHHHH------HHHHHHhC-------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCE
Confidence 3455666 99999875 367888999999999999999999999999999887643 456778999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
+..++.+ |++++++++++++++|++++|+||+|...+ +++|.++|+++ |+++|+|+++..... ..
T Consensus 121 v~~v~~~-------d~~~l~~~i~~~tklV~le~p~np~g~~~d---l~~I~~la~~~-gi~livD~a~~~~~~----~~ 185 (380)
T TIGR01325 121 VSFVDPT-------DLNAWEAAVKPNTKLVFVETPSNPLGELVD---IAALAELAHAI-GALLVVDNVFATPVL----QQ 185 (380)
T ss_pred EEEECCC-------CHHHHHHhcCCCceEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCccccc----CC
Confidence 9988753 789999999889999999999999999999 99999999999 999999999875321 11
Q ss_pred ccccCCCCCCceEEEecccccccccccee-EEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
++ ..+.++++.|++|.++.+|.++ |++++++++++.++......+...+++....+... .+.+..+.
T Consensus 186 pl-----~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~-------l~tl~~r~ 253 (380)
T TIGR01325 186 PL-----KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKG-------LETLSLRM 253 (380)
T ss_pred ch-----hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhc-------cCcHHHHH
Confidence 11 1244589999999997667665 77888988888887765555545555554433333 34455566
Q ss_pred HHHHHHHHHHHHHhcccCCcee
Q 018665 243 KAFRERRDFLVKSFGELEGVKM 264 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~ 264 (352)
++..+++..+.+.|+++|++..
T Consensus 254 ~~~~~~a~~la~~L~~~p~v~~ 275 (380)
T TIGR01325 254 QKQFDSALAIAEWLQAQPQVQA 275 (380)
T ss_pred HHHHHHHHHHHHHHHcCCCccE
Confidence 7777788888899988776543
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=190.84 Aligned_cols=291 Identities=15% Similarity=0.222 Sum_probs=209.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC-----CCCEEEecCCCCCC-hHHHHHhcCC------------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS-----PGDEVIIPAPFWVS-YPEMARIADA------------ 82 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-----~~~~vl~~~~~~~~-~~~~~~~~g~------------ 82 (352)
..+++.+...-. ..+.+++.||++||++.+++...+ ...+|+.....|++ +..++...+-
T Consensus 87 ~~la~~L~~~s~--~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~ 164 (404)
T COG4992 87 AELAEKLVELSP--FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLP 164 (404)
T ss_pred HHHHHHHHhhCc--cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCC
Confidence 555555541110 378999999999999999987532 12467766665553 3333322111
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.++.+|. -|++.+++++++++.+|++...+...|... |.+.++++.++|+++ |+++|.||++.++..+|+.
T Consensus 165 g~~~vpf-------nDi~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~-g~LLI~DEVQtG~GRTGk~ 236 (404)
T COG4992 165 GFRHVPF-------NDIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEH-GALLILDEVQTGLGRTGKL 236 (404)
T ss_pred CceecCC-------CCHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHh-CeEEEEeccccCCCccchH
Confidence 2223332 289999999999999999999999999775 566899999999999 9999999999999888753
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
+ .+.. ++...-+.++.|.+| +|.++|.+++++.+.+.+....+.++++.|+++++++.++++.-.. ++.
T Consensus 237 f-A~e~----~gV~PDI~tlaK~Lg-GG~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~-e~l---- 305 (404)
T COG4992 237 F-AYEH----YGVEPDILTLAKALG-GGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLE-EGL---- 305 (404)
T ss_pred H-HHHH----hCCCCCEEEeecccc-CCccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcc-hhH----
Confidence 2 1111 122233777889999 8899999999976677777777788899999999999999986321 333
Q ss_pred HHHHHHHHHHHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC
Q 018665 242 VKAFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~ 317 (352)
.++.++.-+++.+.|++ ++-++-+ ..-|.++-+++.... .+.++.+.+.++ |+++.+. .
T Consensus 306 l~~v~~~g~~~~~~L~~l~~~~~~v~~v-RG~GLmiGiel~~~~-----------~a~~~~~~~~~~-gvL~~~a----~ 368 (404)
T COG4992 306 LENVREKGEYLLQRLRELKRRYPLVKEV-RGRGLMIGIELKEPY-----------RARDIVRALREE-GVLVLPA----G 368 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCceeee-ecceeEEEEEecCcc-----------cHHHHHHHHHHC-CeEEecC----C
Confidence 44444455555555554 3312222 244777777776531 378899998876 8988775 3
Q ss_pred CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCCC
Q 018665 318 DTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 318 ~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
++.+|+.++. ++|++++++++|++++..+..+
T Consensus 369 ~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~~~ 402 (404)
T COG4992 369 PNVIRFLPPLVITEEEIDEALDALERALAAASAR 402 (404)
T ss_pred CCeEEecCCccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 6799999998 9999999999999999876543
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=196.95 Aligned_cols=218 Identities=14% Similarity=0.187 Sum_probs=163.9
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIAD 81 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g 81 (352)
+.+...+++ +.+|++++ .+...+++++++++..++.+++++||+|+++.+.|..+... ++..|
T Consensus 63 ~~p~~~~Le------~~lA~l~G-------~~~~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G 129 (398)
T PRK07504 63 SNPTVDMFE------KRMCALEG-------AEDARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYG 129 (398)
T ss_pred CCchHHHHH------HHHHHHhC-------CCeeeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcC
Confidence 345556777 99999986 33344578889999888888889999999999999976544 34678
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++. .|++++++++++++++|++++|+||+|.+.| +++|.++|+++ |+++|+|++|+...+
T Consensus 130 ~~v~~vd~-------~d~e~l~~ai~~~tklV~lesp~NptG~v~d---l~~I~~la~~~-gi~lvvD~a~a~~~~---- 194 (398)
T PRK07504 130 IESTLVDG-------LDLDNWEKAVRPNTKVFFLESPTNPTLEVID---IAAVAKIANQA-GAKLVVDNVFATPLF---- 194 (398)
T ss_pred eEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCcEecC---HHHHHHHHHHc-CCEEEEECCcccccc----
Confidence 88888851 5899999999999999999999999999999 99999999999 999999999875322
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeE-EEEcChhHHH-HHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g-~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
..++ . .+.++++.|++|.++.+|.++| +++.+++++. .++......+..++++....+...++. +.
T Consensus 195 ~~~~-~----~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~t-------l~ 262 (398)
T PRK07504 195 QKPL-E----LGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLET-------LP 262 (398)
T ss_pred CCch-h----hCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccch-------HH
Confidence 1111 1 2455899999999977888875 6667777665 344433444445666666555555543 45
Q ss_pred HHHHHHHHHHHHHHHHhcccCCce
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
.+.++..++...+.+.|++.|++.
T Consensus 263 ~R~~~~~~na~~la~~L~~~p~v~ 286 (398)
T PRK07504 263 VRVRQQTESAAAIADFLAGHPKVA 286 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcc
Confidence 555666678888888888877654
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=199.63 Aligned_cols=281 Identities=15% Similarity=0.186 Sum_probs=198.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC----------CCCEEEecCCCCCChHHHHHhcCC--------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS----------PGDEVIIPAPFWVSYPEMARIADA-------- 82 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----------~~~~vl~~~~~~~~~~~~~~~~g~-------- 82 (352)
+.++++. ..+.+++++|+++|++.+++.+.. ..++|++....|++....+...+.
T Consensus 90 ~~l~~~~-------~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~ 162 (401)
T PRK00854 90 EELAALT-------GSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGF 162 (401)
T ss_pred HHHHhhC-------CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccC
Confidence 5555553 246899999999999999998742 125788877777665433332221
Q ss_pred -----eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEecccccccc
Q 018665 83 -----TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHII 156 (352)
Q Consensus 83 -----~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~~livD~~~~~~~ 156 (352)
.+..++. .|++++++.+.+++++|++++|+||+|.+.| .+++++|.++|+++ |+++|+||++.++.
T Consensus 163 ~~~~~~~~~~~~-------~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~-gi~lI~DEv~~g~g 234 (401)
T PRK00854 163 GPFTPGFRVVPF-------GDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTAN-NVTLILDEIQTGLG 234 (401)
T ss_pred CCCCCCeEEeCC-------CCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCC
Confidence 2222321 3789999999889999999999999999887 45699999999999 99999999998776
Q ss_pred cCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCCh
Q 018665 157 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
+.|.. ..........+ +++ ++|.++ +| +|+|++++++++++.+.......+++.+++.+.++.++++. .
T Consensus 235 ~~g~~-~~~~~~g~~~D--~~~--~~K~l~-gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~----l 304 (401)
T PRK00854 235 RTGKL-LAEEHEGIEAD--VTL--IGKALS-GGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKV----L 304 (401)
T ss_pred CCchH-hHHhhcCCCCC--EEE--eccccc-CCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHH----H
Confidence 65531 11111111112 333 469997 55 69999999999988876555555667899999999999875 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCC--ceecCCCCceEEEeec-CCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEG--VKMSEPQGAFYLFIDF-STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g--~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
+. ..+.+.++++.+++.+.|+++.. +....+. |.++.+.+ ++. .+..++++.|.++ ||.+.+.
T Consensus 305 ~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~-g~~~~i~~~~~~-----------~~~~~~~~~L~~~-GV~v~~~ 370 (401)
T PRK00854 305 TE-EGMIENAAEMGAYFLEGLRSIRSNIVREVRGR-GLMLAVELEPEA-----------GGARQYCEALKER-GLLAKDT 370 (401)
T ss_pred HH-cCHHHHHHHHHHHHHHHHHhhccCceEEEecc-ceEEEEEEecCc-----------hhHHHHHHHHHHC-CeEEecC
Confidence 11 33567778888888888887622 1112333 44444444 221 1567899999976 9998653
Q ss_pred CCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHh
Q 018665 313 DAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 313 ~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~ 344 (352)
.++++|++++. +++++++++++|++++.
T Consensus 371 ----~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 371 ----HDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred ----CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 25799999864 99999999999998864
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=199.65 Aligned_cols=309 Identities=11% Similarity=0.083 Sum_probs=208.1
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHhcCCeE-------------
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATP------------- 84 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~~g~~v------------- 84 (352)
..+|+++. ..+.+. .+.++++++|++|++.+++... .+..+|+...++|++....+...+...
T Consensus 87 ~~la~~l~~~~~~~~-~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (425)
T PRK08088 87 LELCEKMNQKVPGDF-AKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGH 165 (425)
T ss_pred HHHHHHHHHhCCCCC-CCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCC
Confidence 44555554 233221 2578889999998888887642 223567777999988875554433211
Q ss_pred -EE--ecccCCCCccc--CHHHHHhhcc-----CCeeEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc
Q 018665 85 -VI--LPTRISENFLL--DPKVLESKLT-----EKSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153 (352)
Q Consensus 85 -~~--i~~~~~~~~~~--d~~~l~~~l~-----~~~~~i~i~~p-~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~ 153 (352)
.. +|.+. .+... +++.+++.++ ++.+++++... ++++...++.+++++|.++|+++ |+++|+||+++
T Consensus 166 ~~~~~~p~~~-~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~-~~~lI~Dev~~ 243 (425)
T PRK08088 166 VYRALYPCPL-HGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEH-GIMLIADEVQT 243 (425)
T ss_pred cEEcCCCccc-cCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecccc
Confidence 11 22111 11111 1556777764 45666666555 45666778999999999999999 99999999999
Q ss_pred ccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCC
Q 018665 154 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
++.+.+. ..++.. .+.++.+.|+||.++ +|+|+||+++++++++.+.......+++.+++.+.++.++++....
T Consensus 244 g~g~~g~-~~~~~~----~~~~pdi~s~sK~l~-~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~ 317 (425)
T PRK08088 244 GAGRTGT-LFAMEQ----MGVAADLTTFAKSIA-GGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ 317 (425)
T ss_pred CCCcCcc-hhHHhh----cCCCCCEEEEecccc-CCCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence 8766543 122211 123344899999998 9999999999999999887766677788999999999999987432
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
++.++++++..+++++.+.+.+.+.|.+..+.+. |+++|+.+.+........ .....++.+.+.++ ||.+.++.
T Consensus 318 -~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~~~~l~l~~~~~~~~p~---~~~~~~l~~~~~~~-Gv~~~~~~ 391 (425)
T PRK08088 318 -ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHSKPN---AKLTAQIVARARDK-GLILLSCG 391 (425)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ceEEEEEEecCCCCCCCC---HHHHHHHHHHHHhC-CCEEecCC
Confidence 4555666666555566565555555443333333 888999984321100000 01367788888876 88887754
Q ss_pred CCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 314 AFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 314 ~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+ ++.+|++++. +++++++++++|++++++.
T Consensus 392 ~~--~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 392 PY--YNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred CC--CCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 43 5789999995 8999999999999999764
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=200.58 Aligned_cols=276 Identities=18% Similarity=0.147 Sum_probs=203.8
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC----CC-CEEEecCCCCCChHH---HHHhcCCeEEEecccCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS----PG-DEVIIPAPFWVSYPE---MARIADATPVILPTRIS 92 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~~-~~vl~~~~~~~~~~~---~~~~~g~~v~~i~~~~~ 92 (352)
+.++++++ .++++|++++|++++++.++.++.. ++ +.|++....|+++.. .++..|.+++.++++.
T Consensus 49 ~~la~~~g-----~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~- 122 (353)
T TIGR03235 49 KQVAEALG-----ADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE- 122 (353)
T ss_pred HHHHHHhC-----CCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC-
Confidence 88888886 6778999999999999988888752 45 678888877776654 3456799999999863
Q ss_pred CCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCC
Q 018665 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 172 (352)
Q Consensus 93 ~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
++.+|++.+++.++++++++++++++||||...| +++|.++|+++ |+++++|++++.. ..+..+. ..
T Consensus 123 -~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~-~~~~ivD~a~~~g----~~~~~~~----~~ 189 (353)
T TIGR03235 123 -SGRIDVDELADAIRPDTLLVSIMHVNNETGSIQP---IREIAEVLEAH-EAFFHVDAAQVVG----KITVDLS----AD 189 (353)
T ss_pred -CCcCCHHHHHHhCCCCCEEEEEEcccCCceeccC---HHHHHHHHHHc-CCEEEEEchhhcC----Ccccccc----cc
Confidence 4568999999999888999999999999999999 89999999999 9999999998752 2222222 13
Q ss_pred CceEEEeccccccccccceeEEEEcChhHHHH--HHhh-------hhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 173 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA--CNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 173 ~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
+.++++.|.+|++|.+ ++|+++.+++.... +... ......+++.....++.++++. .....++..+
T Consensus 190 ~~D~~~~s~~K~~gp~--g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~ 264 (353)
T TIGR03235 190 RIDLISCSGHKIYGPK--GIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEI---ARRNAQAWEV 264 (353)
T ss_pred CCCEEEeehhhcCCCC--ceEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHH---HHhhHHHHHH
Confidence 4558888999987633 48999888765322 1110 1122345777777777777775 2345678888
Q ss_pred HHHHHHHHHHHHhcccCCceecCCCC---ceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC-
Q 018665 244 AFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT- 319 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~- 319 (352)
+++++++++++.|++ +|+++..+.. ..++.+.+++. +.+++.+.|. + +|.+.+|..|+...
T Consensus 265 ~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~~~------------~~~~v~~~L~-~-~i~v~~g~~~~~~~~ 329 (353)
T TIGR03235 265 KLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSIDGV------------NSEALIVNLR-A-DAAVSTGSACSSSKY 329 (353)
T ss_pred HHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeCCc------------CHHHHHHHHh-C-CeEEEchhhcCCCCC
Confidence 999999999999988 5988874322 22344444532 6788888885 5 79999998886443
Q ss_pred ---eEEEEeecCHHHHHHH
Q 018665 320 ---CIRISYAASLTTLQAA 335 (352)
Q Consensus 320 ---~iRi~~~~~~~~l~~~ 335 (352)
.+|.+++.+++++..+
T Consensus 330 ~~~~~l~~~g~~~~~~~~~ 348 (353)
T TIGR03235 330 EPSHVLQAMGLDTDRARGA 348 (353)
T ss_pred CCCHHHHHcCCCHHHhCcc
Confidence 6788888866555443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-24 Score=190.46 Aligned_cols=216 Identities=11% Similarity=0.112 Sum_probs=170.7
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcCCe
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADAT 83 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g~~ 83 (352)
+....++ +.+|++.+ .+++++++|+++|+..++.+++++||+|++++|.|.++... ++..|.+
T Consensus 61 pt~~~Le------~~iA~le~-------~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~ 127 (394)
T PRK09028 61 PTHFAFQ------AAIVELEG-------GAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIE 127 (394)
T ss_pred chHHHHH------HHHHHHhC-------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceE
Confidence 3445777 99998863 46889999999999999999999999999999999888753 4567888
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
+..++.. +.+.+++.+++++++|++++|+||+|.+.+ +++|+++|+++ |+++++|++|+.. ....
T Consensus 128 v~~v~~~-------~~e~l~~~l~~~TklV~lespsNPtg~v~d---l~~I~~la~~~-g~~lvvD~t~a~p----~~~~ 192 (394)
T PRK09028 128 TTYYDPM-------IGEGIRELIRPNTKVLFLESPGSITMEVQD---VPTLSRIAHEH-DIVVMLDNTWASP----INSR 192 (394)
T ss_pred EEEECCC-------CHHHHHHhcCcCceEEEEECCCCCCCcHHH---HHHHHHHHHHc-CCEEEEECCcccc----ccCC
Confidence 8877532 457899999889999999999999999887 99999999999 9999999999741 1111
Q ss_pred ccccCCCCCCceEEEecccccc-ccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~-g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
++ +.+-++++.|.+|++ |.++.-.|+++.++++.+.+.......+..++++....+...+++ +.-+.
T Consensus 193 Pl-----~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-------L~lR~ 260 (394)
T PRK09028 193 PF-----EMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRT-------LGVRL 260 (394)
T ss_pred cc-----ccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-------HHHHH
Confidence 21 245669999999999 434566788877888777777665556667888877776666654 55666
Q ss_pred HHHHHHHHHHHHHhcccCCce
Q 018665 243 KAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~ 263 (352)
++..++...+.+.|++.|.+.
T Consensus 261 ~~~~~na~~la~~L~~~p~v~ 281 (394)
T PRK09028 261 AQHEKNALKVANWLATRPEVD 281 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCcc
Confidence 677778888999998887653
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-24 Score=192.09 Aligned_cols=209 Identities=13% Similarity=0.175 Sum_probs=161.9
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC----hHHHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~----~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.+|++.+ ..+. +++++|++++..++.+++++||+|+++.|.|.+ +...++..|.+++.++.
T Consensus 67 ~~lA~l~g------~~~~-v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~------- 132 (405)
T PRK08776 67 EALAELEG------GAGG-VITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL------- 132 (405)
T ss_pred HHHHHHhC------CCce-EEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC-------
Confidence 88888875 3344 566666899999999999999999999999987 34455667888888864
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
.|++++++++++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|++|... ....++. .+.++
T Consensus 133 ~d~~~l~~~i~~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~-gi~vIvD~a~a~~----~~~~pl~-----~gaDi 199 (405)
T PRK08776 133 TDPRSLADALAQSPKLVLIETPSNPLLRITD---LRFVIEAAHKV-GALTVVDNTFLSP----ALQKPLE-----FGADL 199 (405)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCccCC---HHHHHHHHHHc-CCEEEEECCCccc----ccCCccc-----ccCCE
Confidence 2789999999889999999999999999988 99999999999 9999999998742 1112221 23348
Q ss_pred EEeccccccccc-cceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMT-GWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 177 ~~~s~sK~~g~~-g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
++.|.+|.++.+ +...|+++. ++++.+++.......+..++++.+.++... .++++.+.++..++...+.+
T Consensus 200 vv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~g-------l~tl~~r~~~~~~na~~la~ 272 (405)
T PRK08776 200 VLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRG-------LRTLDARLRVHQENADAIAA 272 (405)
T ss_pred EEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhh-------hCcHHHHHHHHHHHHHHHHH
Confidence 999999999644 466788876 567777776655555556777776665544 45577788888889999999
Q ss_pred HhcccCCce
Q 018665 255 SFGELEGVK 263 (352)
Q Consensus 255 ~l~~~~g~~ 263 (352)
.|++.|.+.
T Consensus 273 ~L~~~p~v~ 281 (405)
T PRK08776 273 LLDGHAAVN 281 (405)
T ss_pred HHHcCCCee
Confidence 998877654
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-24 Score=194.22 Aligned_cols=217 Identities=15% Similarity=0.168 Sum_probs=164.1
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH----HHHHhcCC
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADA 82 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~----~~~~~~g~ 82 (352)
.+...+++ +.++++++ .++.++++|+++++..++.+++++||+|+++.+.|.... ..++..|+
T Consensus 64 ~p~~~~le------~~lA~l~g-------~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~ 130 (403)
T PRK07503 64 NPTLALLE------QRMASLEG-------GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGV 130 (403)
T ss_pred CchHHHHH------HHHHHHhC-------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCE
Confidence 33455666 99999985 334577778889999999999999999999999987643 34567899
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++.. |++++++++++++++|++++|+||+|.+.+ +++|.++|+++ |+++|+|++|+.... .
T Consensus 131 ~v~~vd~~-------d~~~l~~~i~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~-gi~lIvD~a~a~~~~----~ 195 (403)
T PRK07503 131 TVRHVDLT-------DPAALKAAISDKTRMVYFETPANPNMRLVD---IAAVAEIAHGA-GAKVVVDNTYCTPYL----Q 195 (403)
T ss_pred EEEEeCCC-------CHHHHHHhcCccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCccccc----C
Confidence 99988763 789999999889999999999999999999 99999999999 999999999975321 1
Q ss_pred cccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh--hhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
.++ . .+.++++.|++|.+|.+| .+.|+++.+++++++++.. ....+..++++.+..+...++ .+.
T Consensus 196 ~~l-~----~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~-------tl~ 263 (403)
T PRK07503 196 RPL-E----LGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLK-------TLA 263 (403)
T ss_pred Cch-h----hCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc-------hHH
Confidence 122 1 234499999999998554 6789999888888887632 333445566666655544443 344
Q ss_pred HHHHHHHHHHHHHHHHhcccCCce
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
.+.++..++...+.+.|++.|.+.
T Consensus 264 ~r~~~~~~na~~~a~~L~~~p~v~ 287 (403)
T PRK07503 264 LRMDRHCASAQAVAEWLARHPAVE 287 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcc
Confidence 445555567778888888776654
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-24 Score=192.72 Aligned_cols=218 Identities=11% Similarity=0.148 Sum_probs=165.4
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH----HHHHhcCC
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADA 82 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~----~~~~~~g~ 82 (352)
.+...+++ +.+|++++ .+..++++|+++++..++.+++++||+|+++.+.|.... ..+...|+
T Consensus 58 ~p~~~~le------~~lA~l~g-------~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~ 124 (391)
T TIGR01328 58 NPTVSNLE------GRIAFLEG-------TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGI 124 (391)
T ss_pred CchHHHHH------HHHHHHhC-------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe
Confidence 34455677 99999986 345788888899999999999999999999999887544 34556899
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
++..++++ |++.+++++++++++|++++|+||+|.+.+ +++|.++|+++ |+++|+|++++.... .
T Consensus 125 ~~~~vd~~-------d~e~l~~~i~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~-gi~livD~a~a~~~~----~ 189 (391)
T TIGR01328 125 QVDFINMA-------IPEEVKAHIKDNTKIVYFETPANPTMKLID---MERVCRDAHSQ-GVKVIVDNTFATPML----T 189 (391)
T ss_pred EEEEECCC-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCchhcc----C
Confidence 99888763 789999999889999999999999999999 88999999999 999999999875321 1
Q ss_pred cccccCCCCCCceEEEeccccccccccce-eEEEEcChhHHHHHHhhhh--ccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~-~g~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
.++ ..+..+++.|++|.+|.+|.+ .|+++.++++++.++.... ..+...+++....+...++ .+.
T Consensus 190 ~~~-----~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~-------tl~ 257 (391)
T TIGR01328 190 NPV-----ALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLK-------TLN 257 (391)
T ss_pred Cch-----hcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcC-------cHH
Confidence 111 123448999999999867765 5788889998888775432 2233455555554444443 344
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcee
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKM 264 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~ 264 (352)
.+.++.+++...+.+.|++.|++..
T Consensus 258 ~r~~~~~~na~~la~~L~~~p~v~~ 282 (391)
T TIGR01328 258 IRMKRHSENAMKVAEYLKSHPAVEK 282 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccE
Confidence 5566777788888888888776543
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-25 Score=201.57 Aligned_cols=312 Identities=15% Similarity=0.176 Sum_probs=205.9
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHh---c
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI---A 80 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~---~ 80 (352)
+..+..+++ +++++++. ..+++++++|+++|++.+++... ...++|+...+.|+++...+.. .
T Consensus 86 ~~~~~~~la------e~l~~~~~------~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~ 153 (423)
T TIGR00713 86 PTEAEILLA------KEIISRVP------SVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGS 153 (423)
T ss_pred CCHHHHHHH------HHHHHhCC------cccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccC
Confidence 455666777 88888763 34789999999999999888642 2458999999999987643332 1
Q ss_pred CCeEEEecccCC-------CCc---ccCHHHHHhhcc---CCeeEEEEc-CCCCCcccCCC-HHHHHHHHHHHHhCCCEE
Q 018665 81 DATPVILPTRIS-------ENF---LLDPKVLESKLT---EKSRLLILC-SPSNPTGSVYP-KNLLDEIARIVAKHPRLL 145 (352)
Q Consensus 81 g~~v~~i~~~~~-------~~~---~~d~~~l~~~l~---~~~~~i~i~-~p~nptG~~~~-~~~l~~l~~~~~~~~~~~ 145 (352)
+......+..+. ... ..|++++++.++ +++++|+++ .++| +|.+.+ .+++++|.++|++| |++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~-~~l 231 (423)
T TIGR00713 154 GAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEY-GSL 231 (423)
T ss_pred cccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHh-CCE
Confidence 111111111000 000 027899998886 567888875 5566 787777 68999999999999 999
Q ss_pred EEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHh---hhhccccCCChHHHH
Q 018665 146 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK---IQSQFTSGASSISQK 222 (352)
Q Consensus 146 livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 222 (352)
+|+||+|.++.+ +.. .........++ +.++||.++ +|+|+|++++++++++.+.. .....+++.+++.+.
T Consensus 232 lI~DEv~~g~r~-g~~-~~~~~~~~~pD----i~t~sK~l~-~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~a 304 (423)
T TIGR00713 232 LIFDEVMTGFRV-ALG-GAQEYFGVEPD----LTTLGKIIG-GGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMA 304 (423)
T ss_pred EEEEcccccccc-Ccc-hhHHHhCCCcc----hhhhhhhhc-CCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHH
Confidence 999999998733 321 11111111112 457999999 89999999999999988863 224456789999999
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceec-CCCCceEEEeecCCccCCccc--CCCCCCChHHHHH
Q 018665 223 AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAE--GFGKIENSESLCR 299 (352)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 299 (352)
++.++++.... ....+++.+..+++++.+.+.++++ ++... .+.+++ +.+.+......... ..........+.+
T Consensus 305 aa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~g~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (423)
T TIGR00713 305 AGLATLKLLDE-EGVYTELDELAKRLAEGLSEVLEDT-GIPHTVNRVGSM-FSLFFTEEEVTNYADAKKSDTELFAKFFH 381 (423)
T ss_pred HHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEeeccE-EEEEEecCCCCChhhhhcccHHHHHHHHH
Confidence 99999875221 2356777777777777788777776 54432 333443 33333211000000 0000001236778
Q ss_pred HHHHccCEEeccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 300 YLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 300 ~l~~~~gi~i~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
.|+++ ||.+.++. .+.+|++++.+++++++++++|.++++++
T Consensus 382 ~l~~~-Gv~v~~~~----~~~~~l~~~~t~~~i~~~~~~l~~~l~~~ 423 (423)
T TIGR00713 382 EMLDK-GVFLPPSQ----FEACFLSAAHTEEDIENTIEAAEEVFAEL 423 (423)
T ss_pred HHHHC-CeEEecCC----ccceeeECCCCHHHHHHHHHHHHHHHhhC
Confidence 88865 99986542 24689998889999999999999998753
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=195.03 Aligned_cols=284 Identities=14% Similarity=0.096 Sum_probs=195.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc---CC------------CCEEEecCCCCCChHHHHHh-cCCeE---EEecccCCCC--
Q 018665 36 PDQILVSNGAKQSILQAVLAVC---SP------------GDEVIIPAPFWVSYPEMARI-ADATP---VILPTRISEN-- 94 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~---~~------------~~~vl~~~~~~~~~~~~~~~-~g~~v---~~i~~~~~~~-- 94 (352)
.+.+++++++++|++.+++... .+ ..+|+....+|++....+.. .+... .+.+..+...
T Consensus 72 ~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~ 151 (382)
T PLN00144 72 ADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFV 151 (382)
T ss_pred CCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEe
Confidence 4689999999999999998642 10 25688888888876643332 22110 0011100000
Q ss_pred cccCHHHHHhhcc-CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc-cccCCCC
Q 018665 95 FLLDPKVLESKLT-EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGM 171 (352)
Q Consensus 95 ~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~-~~~~~~~ 171 (352)
.-.|++.+++.+. .++++++++..+||+|.. ++.+.+++|.++|++| |+++|+||++.++.+.+..... ...+.
T Consensus 152 ~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~-g~llI~DEv~tg~gr~g~~~~~~~~~~~-- 228 (382)
T PLN00144 152 EYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEA-GALLVFDEVQCGLGRTGYLWAHEAYGVE-- 228 (382)
T ss_pred CCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchHhhhhhcCCC--
Confidence 0027899998885 467777776668885543 3455699999999999 9999999999998777652221 22332
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHH
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 251 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
++ +.+++|.++ +|+|+|++++++++++.+.......+++.|++.+.++.+.++.-. ..+..+.+.+.-+..++.
T Consensus 229 PD----i~t~sK~l~-~G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~-~~~~~~~~~~~g~~l~~~ 302 (382)
T PLN00144 229 PD----IMTLAKPLA-GGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKIS-KPGFLASVAKKGEYLREL 302 (382)
T ss_pred CC----EEEeccccc-CCcceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHH
Confidence 22 888999998 899999999999999888655566678899999999997765421 122223333333333444
Q ss_pred HHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CH
Q 018665 252 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SL 329 (352)
Q Consensus 252 l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~ 329 (352)
+.+.+.+.|.+.-+.. .|+++|+++.. ....+.+.+.++ ||.+.|+. ..+.+|++++. ++
T Consensus 303 l~~~~~~~~~~~~vrg-~G~~~~l~l~~-------------~~~~~~~~~~~~-Gv~i~~~~---~~~~lrl~p~~~~~~ 364 (382)
T PLN00144 303 LRRKLGGNPHVKEVRG-VGLLVGIQLDV-------------PAGPLVDACRDS-GLLVLTAG---KGDVVRLVPPLVISE 364 (382)
T ss_pred HHHHHhhCCCceeeec-CceEEEEEecC-------------ccHHHHHHHHHC-CeEEeecC---CCCEEEEeCCCccCH
Confidence 5555555544433333 78999999832 467788888865 99998863 25899999987 88
Q ss_pred HHHHHHHHHHHHHHhhh
Q 018665 330 TTLQAAVERIKKGLLTL 346 (352)
Q Consensus 330 ~~l~~~~~~l~~~~~~~ 346 (352)
+++++++++|.+++.++
T Consensus 365 ~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 365 AELEQAVEILADCLPAL 381 (382)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999764
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-24 Score=193.89 Aligned_cols=277 Identities=12% Similarity=0.167 Sum_probs=196.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--------CCCCEEEecCCCCCChH-HHHHhcCCe------------EEEecccCCCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--------SPGDEVIIPAPFWVSYP-EMARIADAT------------PVILPTRISEN 94 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--------~~~~~vl~~~~~~~~~~-~~~~~~g~~------------v~~i~~~~~~~ 94 (352)
.+.+++++||++|++.+++.+. ...++|+..+..|++.. ..+...+.. +..++.
T Consensus 92 ~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 166 (397)
T TIGR03246 92 ADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY----- 166 (397)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-----
Confidence 4699999999999999998762 12356777777676654 343433321 112221
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
.|++.+++.+++++++|+++.+++++|... |.+.+++|.++|++| |+++|+||++.+++++|... ......
T Consensus 167 --~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tG~Gr~G~~~-a~~~~g---- 238 (397)
T TIGR03246 167 --NDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRH-NALLIFDEVQTGVGRTGELY-AYMHYG---- 238 (397)
T ss_pred --CCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhcCCccccch-hhhhcC----
Confidence 378999999988888888887777778664 788999999999999 99999999998887666422 211111
Q ss_pred ceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
....+.+++|.+| +|+++|++++++++++.+.......+++.+++.++++.++++.. + -+++.++++++.+++.
T Consensus 239 v~pDi~t~~K~lg-gG~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~----~-~~~l~~~~~~~~~~l~ 312 (397)
T TIGR03246 239 VTPDILTSAKALG-GGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLV----N-TPELLAGVKQRHDLFV 312 (397)
T ss_pred CCCCEEEeehhhh-CCcceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHH----h-hccHHHHHHHHHHHHH
Confidence 1122458899998 89999999999999888865545556778999999998988751 1 2356677777888888
Q ss_pred HHhcccC---C-ceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--
Q 018665 254 KSFGELE---G-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-- 327 (352)
Q Consensus 254 ~~l~~~~---g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-- 327 (352)
+.|+++. + +..+. ..|.++.+.+.+... .....+++.|+++ |+.+.+. .++++|++++.
T Consensus 313 ~~L~~l~~~~~~~~~vr-g~G~~~~i~~~~~~~---------~~~~~~~~~l~~~-Gv~~~~~----g~~~lR~~p~~~~ 377 (397)
T TIGR03246 313 DGLEKINARYNVFSEIR-GKGLLIGAVLTEAYQ---------GKAKQFVNAAAEE-GVIALIA----GPNVVRFAPSLVI 377 (397)
T ss_pred HHHHHHHhcCCCeEeee-cCceEEEEEEcCchh---------hHHHHHHHHHHHC-CeEEeec----CCCEEEEeCCCCC
Confidence 8777651 1 22222 234545555532100 1467888888876 8888763 24789997666
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 018665 328 SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 328 ~~~~l~~~~~~l~~~~~~~ 346 (352)
+++++++++++|+++++++
T Consensus 378 t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 378 SDDDIDEGLARFERAIEQV 396 (397)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998753
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-23 Score=182.75 Aligned_cols=284 Identities=20% Similarity=0.215 Sum_probs=230.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcCCeEEEecccCCCCcccCHHHHHhhccC--Cee
Q 018665 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTE--KSR 111 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~--~~~ 111 (352)
.+-+++++++|.+++.++.++.++||+||+.....++.+ +.++.+|.+++.+..+ .+-.+|++++++++++ +.+
T Consensus 56 ~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~--wg~~v~p~~v~~~L~~~~~~~ 133 (383)
T COG0075 56 GDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVE--WGEAVDPEEVEEALDKDPDIK 133 (383)
T ss_pred CcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcCCCcc
Confidence 366788899999999999999999999999988877655 8999999999999987 4445899999999984 567
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccce
Q 018665 112 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 191 (352)
Q Consensus 112 ~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~ 191 (352)
+|.+++.-.+||...| +++|+++|++| |.++|||.+.+.. ..+... ++++.++++++..|.++ ...+
T Consensus 134 ~V~~vH~ETSTGvlnp---l~~I~~~~k~~-g~l~iVDaVsS~G----g~~~~v----d~wgiDv~itgSQK~l~-~PPG 200 (383)
T COG0075 134 AVAVVHNETSTGVLNP---LKEIAKAAKEH-GALLIVDAVSSLG----GEPLKV----DEWGIDVAITGSQKALG-APPG 200 (383)
T ss_pred EEEEEeccCcccccCc---HHHHHHHHHHc-CCEEEEEecccCC----Ccccch----hhcCccEEEecCchhcc-CCCc
Confidence 8888888889999999 99999999999 9999999997742 111221 23677799999999997 4457
Q ss_pred eEEEEcChhHHHHHHhhh------------------hccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 192 LGYIAGPKHFVAACNKIQ------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 192 ~g~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
+|++..+++..+.+.... ..+.++++.....++..+++.. ..+.++.+.++.+++.+.++
T Consensus 201 la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i--~~EGle~r~~RH~~~~~a~r 278 (383)
T COG0075 201 LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLI--LEEGLEARIARHRRLAEALR 278 (383)
T ss_pred cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHH
Confidence 899999988777654221 2445678888888899988873 35779999999999999999
Q ss_pred HHhcccCCceecC---CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--C
Q 018665 254 KSFGELEGVKMSE---PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 328 (352)
Q Consensus 254 ~~l~~~~g~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~ 328 (352)
+.++.+ |++.+. ..+.....+..|..+ +..++...+++++|+.+.+|........+||+... +
T Consensus 279 ~~~~al-Gl~~~~~~~~~s~tvta~~~P~g~-----------~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~ 346 (383)
T COG0075 279 AGLEAL-GLELFADPERRSPTVTAIKVPEGV-----------DDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVR 346 (383)
T ss_pred HHHHHc-CCccccCcccCCCceEEEECCCCC-----------CcHHHHHHHHHhCCEEecccccccCccEEEEecCccCC
Confidence 999998 888875 224455677888764 55555558888899999888776667899998766 8
Q ss_pred HHHHHHHHHHHHHHHhhhCC
Q 018665 329 LTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 329 ~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+++..++..|+.++++++.
T Consensus 347 ~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 347 PEDVLAALAALEAALRELGV 366 (383)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999998865
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-24 Score=192.36 Aligned_cols=219 Identities=13% Similarity=0.178 Sum_probs=169.2
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCCh----HHHHHhcCC
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY----PEMARIADA 82 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~----~~~~~~~g~ 82 (352)
.+...+++ +.+|++.+ .++.+++++++.++..++.+++++||+|+++...|.+. ...++..|.
T Consensus 69 ~p~~~~le------~~lA~l~g-------~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~ 135 (403)
T PRK07810 69 NPTVSMFE------ERLRLIEG-------AEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV 135 (403)
T ss_pred CchHHHHH------HHHHHHhC-------CCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc
Confidence 34455666 99999984 55888999999999999999999999999988666443 456778899
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++. .|++++++++++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|++|+.....
T Consensus 136 ~v~~vd~-------~d~~~l~~ai~~~tklV~~esp~Nptg~v~d---l~~I~~la~~~-g~~vivD~a~a~~~~~---- 200 (403)
T PRK07810 136 ETVFVDG-------EDLSQWEEALSVPTQAVFFETPSNPMQSLVD---IAAVSELAHAA-GAKVVLDNVFATPLLQ---- 200 (403)
T ss_pred EEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCCccccC----
Confidence 9999974 2889999999989999999999999999999 99999999999 9999999998753221
Q ss_pred cccccCCCCCCceEEEecccccccccccee-EEEEcChhHHH-HHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~-g~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
.++ ..+.++++.|++|.++..|.++ |+++++++.+. .++......+..++++.+..+.+.++. +..
T Consensus 201 ~~~-----~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t-------l~~ 268 (403)
T PRK07810 201 RGL-----PLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLET-------LAL 268 (403)
T ss_pred Chh-----hcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCc-------HHH
Confidence 111 1244589999999997567665 78888877655 455444445556788777776666654 556
Q ss_pred HHHHHHHHHHHHHHHhcccCCceec
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMS 265 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~ 265 (352)
+.++..++...+.+.|++.|.+..+
T Consensus 269 R~~~~~~~a~~~a~~L~~~p~v~~V 293 (403)
T PRK07810 269 RVRHSNASALRIAEFLEGHPAVRWV 293 (403)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEE
Confidence 6666777777888888887776543
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-24 Score=195.62 Aligned_cols=285 Identities=18% Similarity=0.161 Sum_probs=193.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC----------CCCEEEecCCCCCChHHH-HHhcCCeEE---EecccCC--CCcccCH
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS----------PGDEVIIPAPFWVSYPEM-ARIADATPV---ILPTRIS--ENFLLDP 99 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~----------~~~~vl~~~~~~~~~~~~-~~~~g~~v~---~i~~~~~--~~~~~d~ 99 (352)
.+.+++++||++|++.+++.+.. .+++|++.+..|++.... +...+-... ..+.... .-...|+
T Consensus 88 ~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 167 (400)
T PTZ00125 88 YDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDV 167 (400)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCH
Confidence 46899999999999999987631 346788888777766533 322221100 0010000 0001389
Q ss_pred HHHHhhcc-CCeeEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEE
Q 018665 100 KVLESKLT-EKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 177 (352)
Q Consensus 100 ~~l~~~l~-~~~~~i~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (352)
+++++.++ +++++|+++.++||+|...| .+++++|.++|++| |+++|+||++.++.++|... ... .....++
T Consensus 168 ~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~lli~Dev~~g~g~~G~~~-~~~-~~~~~pd--- 241 (400)
T PTZ00125 168 EALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKY-NVLLIVDEIQTGLGRTGKLL-AHD-HEGVKPD--- 241 (400)
T ss_pred HHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchhh-HHH-hcCCCCC---
Confidence 99999986 67889999888999999886 55699999999999 99999999998876665421 111 1111112
Q ss_pred Eecccccccccc-ceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHh
Q 018665 178 VNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 256 (352)
Q Consensus 178 ~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 256 (352)
+.+++|.++ +| +|+|++++++++++.+.......+++.+++.+.++.++++... . ..+.++.+++.+.+++.|
T Consensus 242 ~~~~sK~l~-~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~--~---~~~~~~~~~~~~~l~~~l 315 (400)
T PTZ00125 242 IVLLGKALS-GGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLK--E---EKLAENAQRLGEVFRDGL 315 (400)
T ss_pred EEEEccccc-CCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH--h---cCHHHHHHHHHHHHHHHH
Confidence 335789998 55 5999999999999988655445566788889888888776411 1 123344444555555555
Q ss_pred ccc----CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHH
Q 018665 257 GEL----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLT 330 (352)
Q Consensus 257 ~~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~ 330 (352)
+++ +.+....+ .|.++++.++.... .+..++++.|.++ ||.+.|+ ..+++|++++. +++
T Consensus 316 ~~l~~~~~~~~~~~~-~g~~~~v~~~~~~~---------~~~~~~~~~l~~~-Gv~v~~~----~~~~lRi~~~~~~~~~ 380 (400)
T PTZ00125 316 KELLKKSPWVKEIRG-KGLLNAIVFDHSDG---------VNAWDLCLKLKEN-GLLAKPT----HDNIIRFAPPLVITKE 380 (400)
T ss_pred HHHHhcCCCeEEEec-ccEEEEEEEccCcc---------hHHHHHHHHHHHC-CeEEeec----CCCEEEEECCccCCHH
Confidence 442 33333333 56667777753100 1567888998865 9999885 36799999764 999
Q ss_pred HHHHHHHHHHHHHhhhC
Q 018665 331 TLQAAVERIKKGLLTLR 347 (352)
Q Consensus 331 ~l~~~~~~l~~~~~~~~ 347 (352)
++++++++|++++.++.
T Consensus 381 ~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 381 QLDQALEIIKKVLKSFD 397 (400)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=189.30 Aligned_cols=218 Identities=12% Similarity=0.106 Sum_probs=161.6
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH----hcC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IAD 81 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~----~~g 81 (352)
+.+...+++ +++|++.+ ... .++++++++|+..++.+++++||+|+++.|+|......+. ..|
T Consensus 59 ~~p~~~~Le------~~lA~~~g------~~~-~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~g 125 (388)
T PRK07811 59 GNPTRTALE------EQLAALEG------GAY-GRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWG 125 (388)
T ss_pred CCccHHHHH------HHHHHHhC------CCc-eEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCC
Confidence 445667778 99999986 233 3455677899999999999999999999999986654433 368
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+++..++. .|++++++++++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|++++....
T Consensus 126 i~~~~~d~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~-gi~lIvD~a~a~~~~---- 190 (388)
T PRK07811 126 VEYTPVDL-------SDLDAVRAAITPRTKLIWVETPTNPLLSITD---IAALAELAHDA-GAKVVVDNTFASPYL---- 190 (388)
T ss_pred eEEEEeCC-------CCHHHHHHhcCcCCeEEEEECCCCCcceecC---HHHHHHHHHHc-CCEEEEECCCCcccc----
Confidence 88877764 3899999999889999999999999999988 99999999999 999999999875321
Q ss_pred ccccccCCCCCCceEEEecccccccccc-ceeEEEEcC-hhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
..++. .+..+++.|++|.++.+| .+.|+++++ +++.+.+...........+++....+...++ .+.
T Consensus 191 ~~p~~-----~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~-------tl~ 258 (388)
T PRK07811 191 QQPLA-----LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLK-------TLA 258 (388)
T ss_pred CCchh-----hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC-------cHH
Confidence 11211 233499999999997443 467988875 5666666655444444455554443333333 355
Q ss_pred HHHHHHHHHHHHHHHHhcccCCce
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
.+.++.+++...+.+.|++.|++.
T Consensus 259 ~R~~~~~~na~~la~~L~~~p~v~ 282 (388)
T PRK07811 259 VRMDRHSENAEAVAEFLAGHPEVS 282 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCee
Confidence 556667778888899998887764
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=188.52 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=162.9
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH---HhcCCeE
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA---RIADATP 84 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~---~~~g~~v 84 (352)
+...+++ +.+|++++ .+++++++|+++|+..++.+++++||+|+++.+.|.++...+ +..|.++
T Consensus 53 p~~~~lE------~~lA~l~g-------~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v 119 (385)
T PRK08574 53 PTLRPLE------EALAKLEG-------GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKV 119 (385)
T ss_pred ccHHHHH------HHHHHHhC-------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEE
Confidence 4455666 99999985 467788899999999999999999999999999999987666 4567777
Q ss_pred EEecccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 85 VILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 85 ~~i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
..++ .|++++++++++ ++++|++++|+||+|.++| +++|+++|+++ |+++|+|++++... ...
T Consensus 120 ~~~~--------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~-gi~livD~t~a~~~----~~~ 183 (385)
T PRK08574 120 VLAY--------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVID---VPEVAKAAKEL-GAILVVDNTFATPL----LYR 183 (385)
T ss_pred EEEC--------CCHHHHHHhcCccCceEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCCccc----cCC
Confidence 6653 367899999987 8999999999999999999 88999999999 99999999986321 111
Q ss_pred ccccCCCCCCceEEEeccccccccccce-eEEEE-cChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWR-LGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~-~g~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
++ ..+.++++.|++|.++.+|-. .|+++ .++++.++++......+...+++....+.+.++. +..+
T Consensus 184 ~l-----~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t-------L~~R 251 (385)
T PRK08574 184 PL-----RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKT-------LEVR 251 (385)
T ss_pred hh-----hhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-------HHHH
Confidence 11 134569999999999645544 46455 4677888877666655656666655544444443 4455
Q ss_pred HHHHHHHHHHHHHHhcccCCce
Q 018665 242 VKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
.++..++...+.+.|++.|.+.
T Consensus 252 ~~~~~~na~~la~~L~~~p~v~ 273 (385)
T PRK08574 252 FERQCRNAMAIAEFLSEHPKVA 273 (385)
T ss_pred HHHHHHHHHHHHHHHHcCCCcC
Confidence 5666667888888888776654
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=191.15 Aligned_cols=283 Identities=17% Similarity=0.140 Sum_probs=203.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc--------------CCCCEEEecCCCCCChHHHHHhc----CC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC--------------SPGDEVIIPAPFWVSYPEMARIA----DA 82 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--------------~~~~~vl~~~~~~~~~~~~~~~~----g~ 82 (352)
+.+|+++ ..+..++.++|..|+..++.++. ++++.|+...-+|.+....++.. +.
T Consensus 154 ~~LA~f~-------g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a 226 (476)
T PLN02955 154 SSLADLK-------KKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNV 226 (476)
T ss_pred HHHHHHH-------CCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCc
Confidence 9999998 47788888888898888888762 45567888888999999888766 57
Q ss_pred eEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 83 TPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
++..++. + |++.|+++++ ++.+.|++....++.|.+.| +++|.++|++| |+++|+||+|+.+.+..
T Consensus 227 ~~~~f~H----N---D~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~-ga~LiVDEAH~~Gv~G~ 295 (476)
T PLN02955 227 EVFVYRH----C---DMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKY-GFLLVIDDAHGTFVCGE 295 (476)
T ss_pred eEEEeCC----C---CHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHc-CcEEEEcccccCceecC
Confidence 7777763 2 7888888774 34566677777899999999 99999999999 99999999999766644
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccc--cCCChHHHHHHHHHhcccCCChHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT--SGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
........+....+.+++++|++|++|..| |++++++++++.+......+. .+.++....++.++++.. ..
T Consensus 296 ~G~G~~e~~g~~~di~ii~~TLsKA~G~~G---Gfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~----~~ 368 (476)
T PLN02955 296 NGGGVAEEFNCEADVDLCVGTLSKAAGCHG---GFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVA----RK 368 (476)
T ss_pred CCCcHHHHhCCCCCCcEEEEeCccchhccC---ceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHH----hc
Confidence 333333333223467799999999997565 999999999888876544333 334444555555565541 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC
Q 018665 238 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~ 317 (352)
....++++.++.+++++.+ |+.+ .+.++.+.+.+.. .+..+.++|.++ ||.+.+.....-
T Consensus 369 ~~~~r~~L~~n~~~fr~~~----G~~~----~sPI~pI~ig~~~-----------~a~~~~~~L~~~-Gi~v~~i~yPtV 428 (476)
T PLN02955 369 EKWRRKAIWERVKEFKALS----GVDI----SSPIISLVVGNQE-----------KALKASRYLLKS-GFHVMAIRPPTV 428 (476)
T ss_pred CHHHHHHHHHHHHHHHHhc----CCCC----CCCEEEEEeCCHH-----------HHHHHHHHHHHC-CCEEEEECCCCC
Confidence 2345667777777777742 4433 2444555554431 567889999976 999877654433
Q ss_pred C---CeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 318 D---TCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 318 ~---~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+ ..+||++.. +++||+++++.|.++......
T Consensus 429 P~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~~~ 464 (476)
T PLN02955 429 PPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFDNT 464 (476)
T ss_pred CCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 3 369999977 999999999999998766544
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=187.78 Aligned_cols=215 Identities=18% Similarity=0.146 Sum_probs=163.3
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIAD 81 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g 81 (352)
+++...+++ +++|++. .++.++++++++++..++.+++++||+|+++.|.|..+...+ +..|
T Consensus 49 ~~p~~~~Le------~~lA~l~--------~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G 114 (366)
T PRK07582 49 SNPTWRALE------AALGELE--------GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLG 114 (366)
T ss_pred CCccHHHHH------HHHHHHc--------CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCe
Confidence 567778888 9999985 345666777788999999999999999999999998887644 4579
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
++++.++..+. .+ .+.+++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|++|... .+.
T Consensus 115 ~~v~~v~~~~~------~~----~~~~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~-g~~lvVD~t~~~~--~~~- 177 (366)
T PRK07582 115 VTVREAPTAGM------AE----AALAGADLVLAETPSNPGLDVCD---LAALAAAAHAA-GALLVVDNTTATP--LGQ- 177 (366)
T ss_pred EEEEEECCCCh------HH----HhccCceEEEEECCCCCCCCccC---HHHHHHHHHHc-CCEEEEECCCCCc--ccc-
Confidence 99999986421 11 22358899999999999999988 99999999999 9999999998531 121
Q ss_pred ccccccCCCCCCceEEEecccccc-ccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~-g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
.++ . .+.++++.|++|.+ |.+|.++||+++ ++++++.+.......+..++++....+...+.. +.
T Consensus 178 -~p~-~----~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t-------l~ 244 (366)
T PRK07582 178 -RPL-E----LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGT-------LG 244 (366)
T ss_pred -Cch-h----cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc-------HH
Confidence 121 1 23348999999999 445789999997 477888887776666667777777766666654 44
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcee
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKM 264 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~ 264 (352)
.+.++..++...+.+.|++.|.+..
T Consensus 245 ~R~~~~~~na~~la~~L~~~p~v~~ 269 (366)
T PRK07582 245 LRFARQCANALAVAELLAGHPAVRG 269 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccE
Confidence 4456667788888888988776643
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=190.50 Aligned_cols=277 Identities=14% Similarity=0.128 Sum_probs=196.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH----HHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~----~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.+|++++ .+..+++++++.|+..++.+++++||+|+++.+.|.+.. ..++..|++++.++..
T Consensus 70 ~~lA~l~g-------~~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~------ 136 (389)
T PRK05968 70 EMLAKLEG-------AEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR------ 136 (389)
T ss_pred HHHHHHhC-------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC------
Confidence 99999986 234455677788999999999999999999999998754 4566789999998742
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
|++++++.+ +++++|++++|+|+++...+ +++|+++|+++ |+++|+|++++...+. .++. .+.++
T Consensus 137 -d~~~l~~~i-~~tklV~ie~pt~~~~~~~d---l~~i~~la~~~-gi~vivD~a~a~~~~~----~p~~-----~g~Di 201 (389)
T PRK05968 137 -DEEAVAKAL-PGAKLLYLESPTSWVFELQD---VAALAALAKRH-GVVTMIDNSWASPVFQ----RPIT-----LGVDL 201 (389)
T ss_pred -CHHHHHHhc-ccCCEEEEECCCCCCCcHHH---HHHHHHHHHHc-CCEEEEECCCcchhcc----Cchh-----cCCcE
Confidence 789999988 57899999988887766655 99999999999 9999999998753221 1111 23358
Q ss_pred EEecccccccccc-ceeEEEEcChhHHHHHHhhhh-ccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQS-QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 177 ~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
++.|++|.++.+| .+.|+++.+++++++++.... ......+++....+...++. +..+.++..++...+.+
T Consensus 202 vv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t-------l~~r~~~~~~~a~~la~ 274 (389)
T PRK05968 202 VIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRT-------LPLRMKAHEASALEIAR 274 (389)
T ss_pred EEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCc-------HHHHHHHHHHHHHHHHH
Confidence 8999999997544 578999999998888776433 23345666666665555543 45556666667888889
Q ss_pred HhcccCCceecC-C-----------CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC------
Q 018665 255 SFGELEGVKMSE-P-----------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG------ 316 (352)
Q Consensus 255 ~l~~~~g~~~~~-~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~------ 316 (352)
.|++.|++..+. | ..|.++.+++.+. .+..++.+.|.. .++.+..|+.+.
T Consensus 275 ~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~-----------~~~~~f~~~L~~-~~~~~s~G~~~slv~p~~ 342 (389)
T PRK05968 275 RLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG-----------IDVRAFADALKL-FRLGVSWGGHESLVVPAE 342 (389)
T ss_pred HHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCH-----------HHHHHHHHhCCc-cEEecCCCCCCceeeeCc
Confidence 999888875543 3 1133455666532 156778887764 366655555443
Q ss_pred -----------------CCCeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 317 -----------------DDTCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 317 -----------------~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
.++.+|+|++. |+.+.+++.|+.+++..
T Consensus 343 ~~~~~~~~~~~~~~~gi~~~liR~SvGl--E~~~dl~~dl~~al~~~ 387 (389)
T PRK05968 343 VVLQQKAQPNSAARFGVSPRSVRLHVGL--EGTEALWADLEQALAAA 387 (389)
T ss_pred ccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHHh
Confidence 13689999999 24555566666665543
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=193.38 Aligned_cols=289 Identities=13% Similarity=0.046 Sum_probs=198.3
Q ss_pred HHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH-----HHHhcCCeEEEecccCCCCcc
Q 018665 22 QFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE-----MARIADATPVILPTRISENFL 96 (352)
Q Consensus 22 ~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~-----~~~~~g~~v~~i~~~~~~~~~ 96 (352)
.++++++ .+..+|++++ +++++..++.+++++||+|+++.|+|.++.. .+...|.+++.++++. .++.
T Consensus 79 ~la~~~g-----~~~~~i~~~s-gt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~ 151 (416)
T PRK00011 79 RAKELFG-----AEYANVQPHS-GSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE-ETGL 151 (416)
T ss_pred HHHHHhC-----CCceeeecCC-chHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCc-ccCC
Confidence 5666665 4455566554 5789999999999999999999999976532 2234567888888763 3467
Q ss_pred cCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc-cccCCCCccccccCCCCCCc
Q 018665 97 LDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 97 ~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~-~~~~~~~~~~~~~~~~~~~~ 174 (352)
+|++++++.+++ ++++++++++++ |...| +++|.++|+++ |+++|+|++|+. ..+.+..+..+. ..
T Consensus 152 ~d~~~l~~~i~~~~~k~v~~~~~~~--~~~~~---~~~I~~la~~~-~~~livD~a~~~g~~~~g~~~~~~~------~~ 219 (416)
T PRK00011 152 IDYDEVEKLALEHKPKLIIAGASAY--SRPID---FKRFREIADEV-GAYLMVDMAHIAGLVAAGVHPSPVP------HA 219 (416)
T ss_pred cCHHHHHHHHHhcCCCEEEECCCcC--CCccC---HHHHHHHHHHc-CCEEEEECcchhcccccCccCCCCC------CC
Confidence 999999999964 788888876554 45567 89999999999 999999999863 222221111111 23
Q ss_pred eEEEeccccccccccceeEEEEcC-hhHHHHHHhhhhccccC-CChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
+++++|++|++ +|.+.|+++++ +++++.+......+..+ +....+.++..++... ..+++++..++++++++.+
T Consensus 220 di~~~S~~K~l--~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~l 295 (416)
T PRK00011 220 DVVTTTTHKTL--RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEA--LEPEFKEYAQQVVKNAKAL 295 (416)
T ss_pred cEEEecCCcCC--CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHH
Confidence 48899999987 56788999985 68888887655433322 2222333322333220 1345678888999999999
Q ss_pred HHHhcccCCceecC-CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC------CCCCCeEEEEe
Q 018665 253 VKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA------FGDDTCIRISY 325 (352)
Q Consensus 253 ~~~l~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~------~~~~~~iRi~~ 325 (352)
.+.|++. |+++.. ...++++|+.+++.. .+..++.+.|.++ ||.+..+.. ...+..+|++.
T Consensus 296 ~~~L~~~-g~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~Ri~~ 363 (416)
T PRK00011 296 AEALAER-GFRVVSGGTDNHLVLVDLRSKG----------LTGKEAEAALEEA-NITVNKNAVPFDPRSPFVTSGIRIGT 363 (416)
T ss_pred HHHHHhC-CCeeeecCCCCeEEEEeCcccC----------CCHHHHHHHHHHc-CcEEccCcCCCCCCCCCCCCceEecC
Confidence 9999987 777653 233477888875320 1466788877654 999874321 11245799964
Q ss_pred ------ecCHHHHHHHHHHHHHHHhh
Q 018665 326 ------AASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 326 ------~~~~~~l~~~~~~l~~~~~~ 345 (352)
..+++|++++++.|++++..
T Consensus 364 ~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 364 PAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred HHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 23689999999999998765
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=188.20 Aligned_cols=278 Identities=14% Similarity=0.133 Sum_probs=194.6
Q ss_pred hHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcCCeEEEecccCCCCc
Q 018665 20 VQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENF 95 (352)
Q Consensus 20 ~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g~~v~~i~~~~~~~~ 95 (352)
++.++++++ .+++++++++++++..++. ++++||+|+++.+.|.++... ++..|++++.++..
T Consensus 53 e~~la~l~g-------~~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~----- 119 (378)
T TIGR01329 53 ESLLAKLDK-------ADRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT----- 119 (378)
T ss_pred HHHHHHHhC-------CCcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC-----
Confidence 388888875 3677777888889987765 779999999999999887653 45689999999862
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
|++++++++++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|+++... ....++ . .+-+
T Consensus 120 --d~~~le~~i~~~tklv~le~psnptg~v~d---l~~I~~la~~~-g~~vivD~a~~~~----~~~~~l-~----~g~D 184 (378)
T TIGR01329 120 --DLDKVKAALGPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQ-NALVVVDNTMMSP----LLCNPL-E----LGAD 184 (378)
T ss_pred --CHHHHHHhcCcCceEEEEECCCCCCCeeec---HHHHHHHHHHc-CCEEEEECCCccc----ccCChh-h----cCCc
Confidence 789999999989999999999999999999 99999999999 9999999997531 111222 1 2335
Q ss_pred EEEeccccccccc-cceeEEEEcCh-hHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAMT-GWRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 176 i~~~s~sK~~g~~-g~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
+++.|.+|.++.+ +...|++++++ .+.+++.......+...+++....+...+ +.+..+.++..++...+.
T Consensus 185 i~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l-------~tl~~R~e~~~~na~~la 257 (378)
T TIGR01329 185 IVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGI-------KTLAIRIEKQQENARAIA 257 (378)
T ss_pred EEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccC-------CCHHHHHHHHHHHHHHHH
Confidence 9999999998533 45689998754 55576766555445556665543333333 335555566666777777
Q ss_pred HHhcccCCceec-CC----------------CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 254 KSFGELEGVKMS-EP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 254 ~~l~~~~g~~~~-~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
+.|++.|.+..+ .| ..|.++.+++.+. ..+.++.+.|. ..++.+..|+...
T Consensus 258 ~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~-----------~~~~~~~~~L~-~~~i~~s~G~~~s 325 (378)
T TIGR01329 258 MFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSV-----------ALSKRLVEATK-LFSITVSFGSVNS 325 (378)
T ss_pred HHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCH-----------HHHHHHHHhCc-CcccccCCCCCCc
Confidence 777766544211 11 1234466666321 13678888874 4577776665432
Q ss_pred C-----------------------CCeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 317 D-----------------------DTCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 317 ~-----------------------~~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
. ++.+|+|++. |+.+.+++.|+.+++..
T Consensus 326 l~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 326 LISMPCFMSHASIPAEVREERGLPEDLVRLSVGI--EDVDDLISDLDIAFVTA 376 (378)
T ss_pred eeeCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHhc
Confidence 1 3589999999 35666777777777643
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=190.47 Aligned_cols=217 Identities=14% Similarity=0.118 Sum_probs=164.2
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCC
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADA 82 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~ 82 (352)
++...+++ +.++++.+ .+++++++|+++|+..++.+++++||+|+++.|+|..+.. .++..|+
T Consensus 64 ~pt~~~Le------~~lA~l~g-------~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi 130 (394)
T PRK07050 64 TPTSLALA------QRLAEIEG-------GRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGI 130 (394)
T ss_pred CHHHHHHH------HHHHHHhC-------CCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCe
Confidence 44455666 99999874 5789999999999999999999999999999999998774 4567899
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
++..++.. +.+.+++++++++++|++++|+||+|...+ +++|+++|+++ |+++|+|++|.....
T Consensus 131 ~v~~vd~~-------~~~~l~~~i~~~tklV~le~p~Np~~~~~d---i~~I~~ia~~~-gi~livD~a~a~~~~----- 194 (394)
T PRK07050 131 TVRFYDPL-------IGAGIADLIQPNTRLIWLEAPGSVTMEVPD---VPAITAAARAR-GVVTAIDNTYSAGLA----- 194 (394)
T ss_pred EEEEECCC-------CHHHHHHhcCCCCeEEEEECCCCCCccHhh---HHHHHHHHHHc-CCEEEEECCcccccc-----
Confidence 99988642 447788889889999999999999987776 99999999999 999999999865211
Q ss_pred cccccCCCCCCceEEEeccccccc-cccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g-~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
+..+ ..+.++++.|++|.++ ..+...|++++ +++++++++......+.+.+++....+...+++ +..
T Consensus 195 --~~~l--~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~t-------l~~ 263 (394)
T PRK07050 195 --FKPF--EHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPS-------LQV 263 (394)
T ss_pred --cCHH--HcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCc-------HHH
Confidence 1111 1244699999999995 23345787775 677888887766655666777665544443332 344
Q ss_pred HHHHHHHHHHHHHHHhcccCCce
Q 018665 241 MVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
+.++..++...+.+.|++.|.+.
T Consensus 264 Rl~~~~~~a~~la~~L~~~p~v~ 286 (394)
T PRK07050 264 RLAAHDRSALEVAEWLKARPEIA 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc
Confidence 55566666777888888776543
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-23 Score=189.48 Aligned_cols=291 Identities=13% Similarity=0.129 Sum_probs=194.6
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHH-HHHhcCC-------------eEEEecccCCCCc---cc
Q 018665 37 DQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPE-MARIADA-------------TPVILPTRISENF---LL 97 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~-~~~~~g~-------------~v~~i~~~~~~~~---~~ 97 (352)
+.+++++|+++|++.+++... ....+|+.....|++... .+...+. .+..+|.+.+... .-
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~ 181 (421)
T PRK09792 102 AKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQD 181 (421)
T ss_pred ceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHH
Confidence 689999999999999998753 233578888888887653 2222121 1333444321110 01
Q ss_pred CHHHHHhhcc-----CCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 98 DPKVLESKLT-----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 98 d~~~l~~~l~-----~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
+++.+++.++ +++++++++..++++|..+ |.+++++|.++|+++ |+++|+||++.++.+.|.. ..+......
T Consensus 182 ~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~G~~-~a~~~~~~~ 259 (421)
T PRK09792 182 SLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEH-GIVMIADEVQSGFARTGKL-FAMDHYADK 259 (421)
T ss_pred HHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCCch-hHHHhcCCC
Confidence 3477777764 3567888877799999765 889999999999999 9999999999998877642 333333222
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHH
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 251 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
++ +.+++|.++ +|+|+|++++++++++.+.......+++.|++.++++.+.++.-.. .+.++++++.-++.++.
T Consensus 260 pD----i~t~gK~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~ 333 (421)
T PRK09792 260 PD----LMTMAKSLA-GGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK-ESLCERANQLGQRLKNT 333 (421)
T ss_pred Cc----EEEeehhhc-CCCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 22 688999998 8999999999999988876555566788999999977777764211 23333333222222233
Q ss_pred HHHHhcccCCceecCCCC-ceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--C
Q 018665 252 LVKSFGELEGVKMSEPQG-AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 328 (352)
Q Consensus 252 l~~~l~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~ 328 (352)
+.+..++.|. +...++ |.++++++++....... ......+.+.+.++ |+.+.+.+. ..+.+|+.++. +
T Consensus 334 l~~l~~~~p~--v~~vrG~Gl~~~ie~~~~~~~~~~----~~~~~~l~~~~~~~-Gv~i~~~g~--~~~~irl~P~l~i~ 404 (421)
T PRK09792 334 LIDAKESVPA--IAAVRGLGSMIAAEFNDPQTGEPS----AAIAQKIQQRALAQ-GLLLLTCGA--YGNVIRFLYPLTIP 404 (421)
T ss_pred HHHHHHhCCC--cceecccceEEEEEecCCccCCcc----hHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEeCCCcCC
Confidence 3222233433 234455 88899998753110000 01356788888876 898864221 25789999887 8
Q ss_pred HHHHHHHHHHHHHHHh
Q 018665 329 LTTLQAAVERIKKGLL 344 (352)
Q Consensus 329 ~~~l~~~~~~l~~~~~ 344 (352)
++++++++++|.++++
T Consensus 405 ~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 405 DAQFDAAMKILQDALS 420 (421)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999885
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=192.52 Aligned_cols=274 Identities=14% Similarity=0.106 Sum_probs=194.8
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCC---CEEEecCCCCCChHH----HHHhcCCeE----EEecccCCCCcccCHHHH
Q 018665 34 YTPDQILVSNGAKQSILQAVLAVCSPG---DEVIIPAPFWVSYPE----MARIADATP----VILPTRISENFLLDPKVL 102 (352)
Q Consensus 34 ~~~~~i~~~~g~~~a~~~~~~~l~~~~---~~vl~~~~~~~~~~~----~~~~~g~~v----~~i~~~~~~~~~~d~~~l 102 (352)
.++++|++++|+|++++.++.++.+++ +.|++....|.+... .++..|.++ +.++.+ .++.+|++.+
T Consensus 84 ~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~~~~~~l 161 (406)
T TIGR01814 84 AKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPR--EEETLRLEDI 161 (406)
T ss_pred CCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccC--CCCccCHHHH
Confidence 678899999999999999999876553 368888899988443 445678887 345443 3445788888
Q ss_pred Hhhc---cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEe
Q 018665 103 ESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 179 (352)
Q Consensus 103 ~~~l---~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (352)
++.+ ++++++|++++++|.+|..+| +++|.++|+++ |+++++|++++. |..+..+.. .+.+++++
T Consensus 162 ~~~~~~~~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~-g~~~~vD~aq~~----G~~~id~~~----~gvD~~~~ 229 (406)
T TIGR01814 162 LDTIEKNGDDIAVILLSGVQYYTGQLFD---MAAITRAAHAK-GALVGFDLAHAV----GNVPLDLHD----WGVDFACW 229 (406)
T ss_pred HHHHHhcCCCeEEEEEeccccccceecC---HHHHHHHHHHc-CCEEEEEccccc----CCccccccc----CCCCEEEE
Confidence 8877 368999999999999999999 99999999999 999999999986 333333322 34569999
Q ss_pred ccccccccccceeEEEEcChhHHHHHHhh-h----------------------hccccCCChHHHHHHHHHhcccCCChH
Q 018665 180 GFSKAFAMTGWRLGYIAGPKHFVAACNKI-Q----------------------SQFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 180 s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-~----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
|.+|+++ +|.+ |.++..++....+... . .....+++.....++.++++.. ...
T Consensus 230 s~hK~l~-g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~--~~~ 305 (406)
T TIGR01814 230 CTYKYLN-AGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIF--DQA 305 (406)
T ss_pred cCccccC-CCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHH--Hhc
Confidence 9999984 2334 4444433333222110 0 0112346777777777777652 123
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc----CCceecCCC----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE
Q 018665 237 VVSKMVKAFRERRDFLVKSFGEL----EGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 308 (352)
..+++.++.+++.+++.+.|+++ ++++++.+. .+..+.+.++ . ++.++.+.|.++ ||.
T Consensus 306 g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~------------~~~~~~~~L~~~-gi~ 371 (406)
T TIGR01814 306 GMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V------------PGKAVFQALIKR-GVI 371 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C------------CHHHHHHHHHHC-CEE
Confidence 46777888888888898888764 357776542 1334556665 2 677899998865 898
Q ss_pred eccCCCCCCCCeEEEEe-ec--CHHHHHHHHHHHHHHH
Q 018665 309 LVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 309 i~~g~~~~~~~~iRi~~-~~--~~~~l~~~~~~l~~~~ 343 (352)
+... .++.+|+|+ +. +++|++++++.|++++
T Consensus 372 v~~~----~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 372 GDKR----EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred Eecc----CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 7532 357999998 43 8999999999999865
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=191.33 Aligned_cols=292 Identities=12% Similarity=0.044 Sum_probs=190.8
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHh-cC--------C-----eEEEecccCCCC------
Q 018665 37 DQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-AD--------A-----TPVILPTRISEN------ 94 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~-~g--------~-----~v~~i~~~~~~~------ 94 (352)
+.++++++|++|++.+++... ....+|+....+|++....+.. .+ . .+..++.+....
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDK 174 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccccc
Confidence 689999999999999998643 2335688888878776533222 11 1 122233321000
Q ss_pred ---cccCHHHHHhhc-----cCCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 95 ---FLLDPKVLESKL-----TEKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 95 ---~~~d~~~l~~~l-----~~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
+.-+++.+++.+ .+++.+|++...+..+|..+ +.+.+++|.++|+++ |+++|+||++.++.+++. ..++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV~tg~gr~g~-~~a~ 252 (420)
T TIGR00700 175 QLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREH-GIVFIADEVQTGFARTGA-MFAC 252 (420)
T ss_pred chhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEecccCCcccch-hHHH
Confidence 001245666654 24677888877777788766 455699999999999 999999999999877664 2222
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 245 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (352)
.... ....+.++||.++ +|+|+|++++++++++.+.......+++.|++.++++.++++... .....+.+.+.-
T Consensus 253 ~~~~----~~pDi~~lsK~l~-~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~-~~~~~~~~~~~g 326 (420)
T TIGR00700 253 EHEG----PEPDLITTAKSLA-DGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIE-SEGLIERARQIG 326 (420)
T ss_pred hhcC----CCCCEEEeecccc-CCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 2221 2233566999999 999999999999999888655566778899999999988876411 122233333333
Q ss_pred HHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEe
Q 018665 246 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 325 (352)
Q Consensus 246 ~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~ 325 (352)
++.++.+.+..+++|.+..+.+. |.++++++.+....... ......+.+.+.++ ||.+.|++.| .+++|+++
T Consensus 327 ~~l~~~L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~~~~~~----~~~~~~l~~~~~~~-Gv~i~p~~~f--~~~lRl~p 398 (420)
T TIGR00700 327 RLVTDRLTTLKAVDPRIGDVRGL-GAMIAVELVDPGTTEPD----AGLAERIATAAHAA-GLLLLTCGMF--GNIIRFLP 398 (420)
T ss_pred HHHHHHHHHHHhhCCCEEEeecc-ceEEEEEEecCCCCCcc----HHHHHHHHHHHHHC-CeEEeccCCC--CCEEEEEC
Confidence 33344444433444445455555 66677776321000000 00244566666655 9999998765 47999998
Q ss_pred ec--CHHHHHHHHHHHHHHHh
Q 018665 326 AA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 326 ~~--~~~~l~~~~~~l~~~~~ 344 (352)
+. +++++++++++|.+++.
T Consensus 399 ~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 399 PLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred CCCcCHHHHHHHHHHHHHHhh
Confidence 75 89999999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-23 Score=185.34 Aligned_cols=278 Identities=10% Similarity=0.076 Sum_probs=194.3
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.+|++.+ .+++++++|+++|+..++.+++++||+|+++++.|.++... ++..|+++..++..
T Consensus 57 ~~lA~l~g-------~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~------ 123 (377)
T TIGR01324 57 DAMCELEG-------GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL------ 123 (377)
T ss_pred HHHHHHhC-------CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC------
Confidence 99999874 57899999999999999999999999999999999877643 45678888877532
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
+.+.+++++++++++|++++|+||+|...+ +++|+++|+++ |+++|+|++|+... ...+ ...+.++
T Consensus 124 -~~e~l~~~i~~~tklV~lesp~Np~g~~~d---l~~I~~la~~~-g~~livD~t~a~g~----~~~p-----l~~gaDi 189 (377)
T TIGR01324 124 -IGEDIATLIQPNTKVLFLEAPSSITFEIQD---IPAIAKAARNP-GIVIMIDNTWAAGL----LFKP-----LEHGVDI 189 (377)
T ss_pred -CHHHHHHhcCCCceEEEEECCCCCCCcHHH---HHHHHHHHHHc-CCEEEEECCCcccc----ccCc-----cccCceE
Confidence 237899999989999999999999999988 99999999999 99999999997521 1111 1245669
Q ss_pred EEeccccccccc-cceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMT-GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 255 (352)
Q Consensus 177 ~~~s~sK~~g~~-g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 255 (352)
++.|.+|.+|.. +...|+++.+++.++.+......++...++.....+...++ .+..+.++..++...+.+.
T Consensus 190 vv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~-------tl~~R~~~~~~~a~~la~~ 262 (377)
T TIGR01324 190 SIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLR-------TLGVRLKQHQESSLAIAKW 262 (377)
T ss_pred EEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHH
Confidence 999999999533 46688999998888877755555555667766655555554 3444455666676778888
Q ss_pred hcccCCce-ecCC----------------CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC--
Q 018665 256 FGELEGVK-MSEP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-- 316 (352)
Q Consensus 256 l~~~~g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-- 316 (352)
|++.|.+. ++.| ..|.++.+++.+.. .+...++.+.|.- .++.+.-|+...
T Consensus 263 L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~---------~~~~~~~~~~l~~-~~~~~slG~~~sl~ 332 (377)
T TIGR01324 263 LSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT---------QKQVHAFLDHLQL-FGLGYSWGGYESLA 332 (377)
T ss_pred HHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC---------HHHHHHHHHhCCc-ceEeccCCCcccee
Confidence 87766542 2222 12444556664310 0134556665542 244433332110
Q ss_pred -----------------CCCeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 317 -----------------DDTCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 317 -----------------~~~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
.++.+|+|++. |+.+.+++.|+.+++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~liR~svGl--E~~~dl~~dl~~al~ 375 (377)
T TIGR01324 333 LCNQPELGHRPNIKRNLEGPLIRVHIGL--ENVDDLKADLKAGFE 375 (377)
T ss_pred ecCCCCCCHHHHHhccCCCCEEEEEeCC--CCHHHHHHHHHHHHh
Confidence 12579999999 345556666666654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-23 Score=184.56 Aligned_cols=290 Identities=17% Similarity=0.246 Sum_probs=203.7
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
|+..+...+++ +.++++++ .+++++++|+++++..++.++ .++||+|+++.++|.++...++..|.
T Consensus 14 ~~~~~~~~~~~------~~la~~~~-------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~ 80 (352)
T cd00616 14 LTLGPKVREFE------KAFAEYLG-------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGA 80 (352)
T ss_pred ccCCHHHHHHH------HHHHHHhC-------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCC
Confidence 44455567777 99999985 357888899999999999998 58899999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++. .++.+|++.+++.++++++++++++ ++|...| +++|.++|+++ |+++|+|++++...... .
T Consensus 81 ~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~---~~~i~~l~~~~-~i~li~D~a~~~g~~~~--~ 150 (352)
T cd00616 81 TPVFVDIDP-DTYNIDPELIEAAITPRTKAIIPVH---LYGNPAD---MDAIMAIAKRH-GLPVIEDAAQALGATYK--G 150 (352)
T ss_pred eEEEEecCC-CcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCC---HHHHHHHHHHc-CCeEEEECCCCCCCeEC--C
Confidence 999999864 3567899999999988899888754 6899988 88999999999 99999999997432111 0
Q ss_pred cccccCCCCCCceEEEeccc--cccccccceeEEEEcC-hhHHHHHHhhhhcc---------------ccCCChHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQSQF---------------TSGASSISQKAG 224 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~s--K~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 224 (352)
..+.. ...+.+.|++ |.++ .| +.|+++.+ +++.++++...... +..++.+.....
T Consensus 151 ~~~~~-----~~d~~~~S~~~~K~~~-~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~ 223 (352)
T cd00616 151 RKVGT-----FGDAGAFSFHPTKNLT-TG-EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIG 223 (352)
T ss_pred EEccc-----CcceeEEcCCCCCCCc-cc-CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHH
Confidence 11111 1136677765 9884 33 45777765 57777665432211 111222222222
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCC-----ceEEEeecCCccCCcccCCCCCCChHHHHH
Q 018665 225 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG-----AFYLFIDFSTYYGSEAEGFGKIENSESLCR 299 (352)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (352)
... .+.++...++.+++.+++.+.|++++|+++..+.. ...+.+.+++..+ .+..++.+
T Consensus 224 ~~~-------l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~ 287 (352)
T cd00616 224 LAQ-------LEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAG---------ESRDELIE 287 (352)
T ss_pred HHH-------HHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCC---------CCHHHHHH
Confidence 211 24456777778889999999999988888774332 2344455553100 17889999
Q ss_pred HHHHccCEEeccCCCCC----------------C-------CCeEEEEeec--CHHHHHHHHHHHH
Q 018665 300 YLLDKAQVALVPGDAFG----------------D-------DTCIRISYAA--SLTTLQAAVERIK 340 (352)
Q Consensus 300 ~l~~~~gi~i~~g~~~~----------------~-------~~~iRi~~~~--~~~~l~~~~~~l~ 340 (352)
.|.++ ||.+....... . ...+|++++. +++|++++++.|+
T Consensus 288 ~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 288 ALKEA-GIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred HHHHC-CCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 98876 88653211100 0 1579999997 9999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-23 Score=185.06 Aligned_cols=280 Identities=20% Similarity=0.306 Sum_probs=190.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 99 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~ 99 (352)
+.+++++ ..+++++++|+++++..++.++ .++||+|+++.++|..+...+...|.+++.+++++ +++.+|+
T Consensus 38 ~~la~~~-------g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~-~~~~~d~ 109 (376)
T TIGR02379 38 TWLENRT-------GTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRP-DTMNIDE 109 (376)
T ss_pred HHHHHHh-------CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-CcCCCCH
Confidence 5555554 4578999999999999998887 78999999999999999999999999999999985 4467999
Q ss_pred HHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc-cCCCCccccccCCCCCCceEEE
Q 018665 100 KVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTV 178 (352)
Q Consensus 100 ~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~ 178 (352)
+++++++++++++|+ |+||+|...+ +++|.++|+++ |+++|+|++++.+. +.+....+ .. .+.+
T Consensus 110 ~~le~~i~~~tk~Ii---p~~~~G~~~d---~~~I~~la~~~-~i~vIeDaa~~~g~~~~~~~~g~---~~-----~~~~ 174 (376)
T TIGR02379 110 TLIESAITHRTKAIV---PVHYAGVACD---MDTIMALANKH-QLFVIEDAAQGVMSTYKGRALGS---IG-----HLGT 174 (376)
T ss_pred HHHHHhcCcCceEEE---EeCCCCCccC---HHHHHHHHHHC-CCEEEEECccccCCccCCcccCC---CC-----CEEE
Confidence 999999998899886 6678999999 88999999999 99999999998754 33322111 11 1344
Q ss_pred ecc--ccccccccceeEEEEcC-hhHHHHHHhhhhcc---------------------ccCCChHHHHHHHHHhcccCCC
Q 018665 179 NGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQF---------------------TSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 179 ~s~--sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
.|| +|.+. +|.+.|+++++ +++.++++...... ++.++.+..+.+...
T Consensus 175 fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~q------- 246 (376)
T TIGR02379 175 FSFHETKNYT-SGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQ------- 246 (376)
T ss_pred EeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHH-------
Confidence 444 37776 66678887765 77888776553211 111222222222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccC--C-ceecC-CCC---c-eEEEeecCCccCCcccCCCCCCChHHHHHHHHHccC
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGELE--G-VKMSE-PQG---A-FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 306 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~~~--g-~~~~~-~~~---g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 306 (352)
.+.+++..++-+++.++..+.|.+++ + +.... +.. . +++++.+++.. +.+++.+.|.++ |
T Consensus 247 L~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~r~~l~~~L~~~-g 314 (376)
T TIGR02379 247 LEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDED-----------DRNELIKYLKEQ-E 314 (376)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCcC-----------CHHHHHHHHHHC-C
Confidence 34455555555556666667766542 2 22211 111 1 23345555421 578999998876 8
Q ss_pred EEeccCCC----------CC--C----------CCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 307 VALVPGDA----------FG--D----------DTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 307 i~i~~g~~----------~~--~----------~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
|.+.+... +. . ...+.|.+.. +++++++.++.|++++
T Consensus 315 I~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 315 IMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred CCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 88763220 00 0 1246666665 8899999999998865
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=188.26 Aligned_cols=211 Identities=18% Similarity=0.231 Sum_probs=159.1
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH----HHHHhcCCeEEEecccCCCC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISEN 94 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~----~~~~~~g~~v~~i~~~~~~~ 94 (352)
|++.+|++.+ .+..++++|+++|+..++.+++++||+|+++.+.|.+.. ..++..|.+++.++.
T Consensus 69 Le~~lA~leg-------~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~----- 136 (431)
T PRK08248 69 FEKRIAALEG-------GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP----- 136 (431)
T ss_pred HHHHHHHHhC-------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC-----
Confidence 3388888874 567889999999999999999999999999999987654 345678999999975
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
.|++++++++++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|++++. +....++ .++.
T Consensus 137 --~d~e~l~~ai~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~-gi~vIvD~t~a~----~~~~~pl-----~~ga 201 (431)
T PRK08248 137 --SDPENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHEH-GIPLIVDNTFAS----PYLLRPI-----EHGA 201 (431)
T ss_pred --CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEeCCCCc----cccCChh-----HcCC
Confidence 2789999999989999999999999999999 88999999999 999999999752 1111121 2466
Q ss_pred eEEEeccccccccccceeEEEEcC-hhHH-----------------------H----------HHHhhhhccccCCChHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGP-KHFV-----------------------A----------ACNKIQSQFTSGASSIS 220 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~-~~~~-----------------------~----------~~~~~~~~~~~~~~~~~ 220 (352)
++++.|++|.+|.+|.++|++++. .+.. + .........+...+++.
T Consensus 202 Divv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~ 281 (431)
T PRK08248 202 DIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFN 281 (431)
T ss_pred CEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHH
Confidence 799999999998888888887763 2110 1 11112222334455555
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCce
Q 018665 221 QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 221 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
...+...++ .+..+.++..++...+.+.|++.|++.
T Consensus 282 a~l~~rgl~-------tl~~R~~~~~~nA~~la~~L~~~p~v~ 317 (431)
T PRK08248 282 SFLLLQGLE-------TLHLRMERHSENALAVAKFLEEHEAVE 317 (431)
T ss_pred HHHHhcCcC-------cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 554444443 356666777778888999999887764
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=189.50 Aligned_cols=284 Identities=13% Similarity=0.092 Sum_probs=182.9
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc----CCC-CEEEecCCCCCChH---HHHHhcCCeEEEecccCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC----SPG-DEVIIPAPFWVSYP---EMARIADATPVILPTRIS 92 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~~-~~vl~~~~~~~~~~---~~~~~~g~~v~~i~~~~~ 92 (352)
+.++++++ . +.++.++++++...++..+. .++ ..|++.+..|++.. ......+.+++.+|.
T Consensus 98 ~~la~~~~-------~-~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~--- 166 (402)
T PRK07505 98 EALSELFG-------A-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH--- 166 (402)
T ss_pred HHHHHHhC-------C-CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC---
Confidence 77777763 2 55555566778887776542 212 34666665554432 122234567777764
Q ss_pred CCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc-cccccCCC-
Q 018665 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPG- 170 (352)
Q Consensus 93 ~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~-~~~~~~~~- 170 (352)
.|++.++++++++++++++++|+||+|.+.+ +++|.++|+++ ++++|+||+|+...+..... ........
T Consensus 167 ----~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~-~~~li~DEa~~~~~~g~~g~~~~~~~~~~~ 238 (402)
T PRK07505 167 ----NDLDALEDICKTNKTVAYVADGVYSMGGIAP---VKELLRLQEKY-GLFLYIDDAHGLSIYGKNGEGYVRSELDYR 238 (402)
T ss_pred ----CCHHHHHHHHhcCCCEEEEEecccccCCcCC---HHHHHHHHHHc-CCEEEEECcccccCcCCCCCchHHHHcCCC
Confidence 2789999988777789999999999999999 88999999999 99999999986433322111 11112222
Q ss_pred CCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhcccc--CCChHHHHHHHHHhcccCCChHHHHHHHHHHHH
Q 018665 171 MWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 247 (352)
Q Consensus 171 ~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 247 (352)
.++++++++|+||.+|.+| |++++ ++++++.+......+++ ++++..+.++.++++.. ..+++.+..+.+++
T Consensus 239 ~~d~~i~~~s~sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~--~~~~~~~~~~~l~~ 313 (402)
T PRK07505 239 LNERTIIAASLGKAFGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIH--LSEELDQLQQKLQN 313 (402)
T ss_pred CCCCeEEEEechhhhhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHH--hccCcHHHHHHHHH
Confidence 3577899999999998555 78764 77888888765554443 34556777777776621 12334444555555
Q ss_pred HHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC---CCeEEEE
Q 018665 248 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRIS 324 (352)
Q Consensus 248 ~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~---~~~iRi~ 324 (352)
+.+.+...+... ......++.++.++.. ..+.++.+.|.++ ||.+.++..+.. +.++|++
T Consensus 314 ~~~~~~~~~~~~-----~~g~~~~i~~~~~~~~-----------~~~~~~~~~l~~~-Gi~v~~~~~p~~~~~~~~lRi~ 376 (402)
T PRK07505 314 NIALFDSLIPTE-----QSGSFLPIRLIYIGDE-----------DTAIKAAKQLLDR-GFYTSPVFFPVVAKGRAGLRIM 376 (402)
T ss_pred HHHHHHHHHHhc-----CCCCCCCEEEEEeCCH-----------HHHHHHHHHHHHC-CCeEeeecCCCCCCCCceEEEe
Confidence 554443332211 0111222223333221 0467889998866 999988743322 2689999
Q ss_pred eec--CHHHHHHHHHHHHHHHhh
Q 018665 325 YAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 325 ~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
++. +++|++++++.|++++++
T Consensus 377 ~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 377 FRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred cCccCCHHHHHHHHHHHHHHHHh
Confidence 995 999999999999998864
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=182.54 Aligned_cols=207 Identities=12% Similarity=0.103 Sum_probs=153.2
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH----HHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~----~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.+|++++ ..+. +++++|+.++..++. ++++||+|+++.+.|.+.. ..++..|.+++.++..
T Consensus 61 ~~lA~l~g------~~~~-v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~------ 126 (390)
T PRK08064 61 DIIAELEG------GTKG-FAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT------ 126 (390)
T ss_pred HHHHHHhC------CCCe-EEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC------
Confidence 99999986 2344 455666788887776 7788999999999998544 4456789999999862
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
|++.+++++++++++|++++|+||+|.+.+ +++|.++|+++ |+++|+|++|..... ..++ ..+.++
T Consensus 127 -d~~~l~~~l~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~-g~~vvvD~a~~~~~~----~~~~-----~~g~Di 192 (390)
T PRK08064 127 -NLEEVAQNIKPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAI-GCLTFVDNTFLTPLL----QKPL-----DLGADV 192 (390)
T ss_pred -CHHHHHHhcCCCceEEEEECCCCCCcEecc---HHHHHHHHHHc-CCEEEEECCCCcccc----cCch-----hhCCcE
Confidence 789999999889999999999999999999 89999999999 999999999865321 1111 134568
Q ss_pred EEeccccccc-cccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 177 ~~~s~sK~~g-~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
++.|++|.++ .+|.-.|++++ ++++++.++.....++...++.....+... .+.+..+.++..++...+.+
T Consensus 193 vv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~g-------l~tl~~R~~~~~~~a~~la~ 265 (390)
T PRK08064 193 VLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRG-------LKTLHVRLEHSSETANKIAL 265 (390)
T ss_pred EEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcc-------cCcHHHHHHHHHHHHHHHHH
Confidence 9999999985 23344677765 567888888777666655555555543322 23355556666777777888
Q ss_pred HhcccCCc
Q 018665 255 SFGELEGV 262 (352)
Q Consensus 255 ~l~~~~g~ 262 (352)
.|++.|.+
T Consensus 266 ~L~~~~~v 273 (390)
T PRK08064 266 YLQEHPKV 273 (390)
T ss_pred HHhcCCCc
Confidence 88776543
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=183.77 Aligned_cols=285 Identities=14% Similarity=0.104 Sum_probs=186.1
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 98 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d 98 (352)
+++.+|++++ .++. ++.++++.++..+...+.++++.|++..-.|.+....++........++ . .|
T Consensus 61 ~e~~la~~~~------~~~~-l~~~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~----~---~d 126 (370)
T PRK05937 61 LEHKIAHFHG------APEA-FIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFR----H---ND 126 (370)
T ss_pred HHHHHHHHhC------CCeE-EEECChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEec----C---CC
Confidence 3399999986 2333 4455555666666666667788888888888888887776543333332 1 48
Q ss_pred HHHHHhhcc------CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCC
Q 018665 99 PKVLESKLT------EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 172 (352)
Q Consensus 99 ~~~l~~~l~------~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
++.|++.++ +++++|++++++|++|.+.| +++|.++|+++ |+++++|++|+...+............. .
T Consensus 127 ~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p---l~eI~~l~~~~-~~~livDea~~~G~~g~~g~g~~~~~~~-~ 201 (370)
T PRK05937 127 LDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP---LEQIIALSKKY-HAHLIVDEAHAMGIFGDDGKGFCHSLGY-E 201 (370)
T ss_pred HHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCchHHhhCC-C
Confidence 898888886 23556778999999999999 99999999999 9999999999853221111000011111 1
Q ss_pred CceEEEeccccccccccceeEEEEcChhHHHHHHhh--hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHH
Q 018665 173 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 250 (352)
Q Consensus 173 ~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
+..+++.|+||.+|..| +.++..++..+.+... ...++.+.+++...++.++++.. .+..+..+++++++++
T Consensus 202 ~~~~~~~tlsK~~g~~G---~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l---~~~~~~~~~~l~~l~~ 275 (370)
T PRK05937 202 NFYAVLVTYSKALGSMG---AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFL---SQEGELARKQLFRLKE 275 (370)
T ss_pred CCcEEEEechhhhhcCc---eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHH
Confidence 22367899999998555 3345556665554422 22334456777776666666541 1112345667777888
Q ss_pred HHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--C
Q 018665 251 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 328 (352)
Q Consensus 251 ~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~ 328 (352)
++.+.|+.. +. +....+.++.. ....+.+.|.++ ||.+.... +...+++|++++. +
T Consensus 276 ~l~~~l~~~-~~-------~~~~~i~~~~~------------~~~~~~~~L~~~-gi~v~~~~-~~~~~~iRis~~~~~t 333 (370)
T PRK05937 276 YFAQKFSSA-AP-------GCVQPIFLPGI------------SEQELYSKLVET-GIRVGVVC-FPTGPFLRVNLHAFNT 333 (370)
T ss_pred HHHHhcCCC-CC-------CCEEEEEeCCh------------hHHHHHHHHHHC-CeeEEeeC-CCCCCEEEEEcCCCCC
Confidence 888877643 10 11112333432 556788887765 89886322 1124689999986 9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCC
Q 018665 329 LTTLQAAVERIKKGLLTLRPGV 350 (352)
Q Consensus 329 ~~~l~~~~~~l~~~~~~~~~~~ 350 (352)
+||++++++.|+++++++..+.
T Consensus 334 ~edid~l~~~L~~~~~~~~~~~ 355 (370)
T PRK05937 334 EDEVDILVSVLATYLEKYQKNV 355 (370)
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999998886643
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=184.51 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=154.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh----cCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~----~g~~v~~i~~~~~~~~~ 96 (352)
+.+|++.+ .+..++++++++|+..++.+++++||+|+++.+.|.+....+.. .|.++.+++.
T Consensus 65 ~~lA~l~g-------~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~------- 130 (425)
T PRK06084 65 QRVAALEG-------GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH------- 130 (425)
T ss_pred HHHHHHhC-------CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC-------
Confidence 99999974 44667889999999999999999999999999999876655543 5777766653
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
.|++++++++++++++|++++|+||+|.+++ +++|.++|+++ |+++|+|++++... ...++ ..+.++
T Consensus 131 ~d~e~le~ai~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~-~i~vVvD~a~a~~~----~~~p~-----~~gaDi 197 (425)
T PRK06084 131 DDIAALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRH-GVPLIVDNTVATPV----LCRPF-----EHGADI 197 (425)
T ss_pred CCHHHHHHHhccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcccc----cCChh-----hcCCCE
Confidence 3899999999889999999999999999999 89999999999 99999999987421 11111 134559
Q ss_pred EEeccccccccccceeEEEEcC-hhH--HHH----------------------------H----HhhhhccccCCChHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGP-KHF--VAA----------------------------C----NKIQSQFTSGASSISQ 221 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~-~~~--~~~----------------------------~----~~~~~~~~~~~~~~~~ 221 (352)
++.|++|.+|.+|.++|.+++. ..+ .+. . .......+...+++..
T Consensus 198 vv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a 277 (425)
T PRK06084 198 VVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNA 277 (425)
T ss_pred EEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 9999999998678887876653 221 000 0 0111223445566555
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCce
Q 018665 222 KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
..+...++ .+..+.++..++...+.+.|++.|++.
T Consensus 278 ~l~lrgl~-------tl~~R~~~~~~na~~la~~L~~~p~v~ 312 (425)
T PRK06084 278 FLILQGLE-------TLALRMERHTENALKVARYLQQHPQVA 312 (425)
T ss_pred HHHHcCcC-------cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 54444443 356666777778888899998887754
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=185.73 Aligned_cols=292 Identities=14% Similarity=0.147 Sum_probs=184.9
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHh-cC-------------CeEEEecccCCC--CcccC
Q 018665 37 DQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-AD-------------ATPVILPTRISE--NFLLD 98 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~-~g-------------~~v~~i~~~~~~--~~~~d 98 (352)
+.++++++|++|++.+++... ....+|+....+|++....+.. .+ ..+..+|.+... .....
T Consensus 116 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (451)
T PRK06918 116 KKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLT 195 (451)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCc
Confidence 589999999999999998642 2345788888888776643322 11 112233332110 00010
Q ss_pred --------HHHHHhhc----c-CCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 99 --------PKVLESKL----T-EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 99 --------~~~l~~~l----~-~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
++.+++.+ . +++.++++...+...|..+ |.+.+++|.++|+++ |+++|+||++.++.+.+. ..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~-gillI~DEV~tg~gr~g~-~~a 273 (451)
T PRK06918 196 EEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEH-GILFVADEIQTGFARTGK-YFA 273 (451)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCcCccCc-eeh
Confidence 22333332 2 3566666665566667655 556699999999999 999999999999887664 233
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
+..+...++ +.|+||.++ +|+|+||+++++++++.+.......+++.+++.+.++.++++... .+.+ .++
T Consensus 274 ~~~~~v~pD----i~t~sK~l~-~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~--~~~~---~~~ 343 (451)
T PRK06918 274 IEHFDVVPD----LITVSKSLG-AGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIE--KENL---NDR 343 (451)
T ss_pred hHhcCCCCC----EEeeehhhc-CCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHH--HCCH---HHH
Confidence 333322122 668999999 899999999999999888665566778899999999888876411 1112 222
Q ss_pred HHHHHHHHHHHhc----ccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCe
Q 018665 245 FRERRDFLVKSFG----ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 320 (352)
Q Consensus 245 ~~~~~~~l~~~l~----~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~ 320 (352)
.++..+.+.+.|+ +++.+..+.+.++++.|....+....... ......+.+.+.++ ||.+.|++.+ .++
T Consensus 344 ~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~-Gvlv~~~~~~--~~~ 416 (451)
T PRK06918 344 AIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKTKEPD----KTLTANICKEANKR-GLLLLSAGTY--GNV 416 (451)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEccCCCcCCCc----HHHHHHHHHHHHHC-CeEEeecCCC--CCE
Confidence 2333333333333 33333445566666554433111000000 00245666666665 9999997655 478
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 321 IRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 321 iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
+|++++. +++++++++++|+++++++-
T Consensus 417 lrl~p~l~~t~~~id~~l~~l~~~l~~~~ 445 (451)
T PRK06918 417 IRVLMPLVITDEQLEEGLTIIEESLQACY 445 (451)
T ss_pred EEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence 9999975 89999999999999998753
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-22 Score=180.37 Aligned_cols=283 Identities=18% Similarity=0.293 Sum_probs=194.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 99 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~ 99 (352)
+.+++++ ..+++++++|+++|+..++.++ .++||+|+++.++|..+...+...|.+++.++++. +++.+|+
T Consensus 38 ~~la~~~-------g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~-~~~~~d~ 109 (375)
T PRK11706 38 QWLEQRF-------GSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRP-DTMNIDE 109 (375)
T ss_pred HHHHHHh-------CCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-CcCCcCH
Confidence 5555554 3478999999999998887765 68999999999999999999999999999999975 3467899
Q ss_pred HHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc-cCCCCccccccCCCCCCceEEE
Q 018665 100 KVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTV 178 (352)
Q Consensus 100 ~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~ 178 (352)
+++++++++++++|+++ |++|...+ +++|.++|+++ |+++|+|++|+.+. +.+. ...... .+.+
T Consensus 110 ~~le~~i~~~tk~i~~~---~~~G~~~~---~~~i~~la~~~-~i~vIeD~a~a~g~~~~~~---~~g~~~-----~~~~ 174 (375)
T PRK11706 110 TLIEAAITPKTRAIVPV---HYAGVACE---MDTIMALAKKH-NLFVVEDAAQGVMSTYKGR---ALGTIG-----HIGC 174 (375)
T ss_pred HHHHHhcCCCCeEEEEe---CCCCCccC---HHHHHHHHHHc-CCEEEEECccccccccCCe---eeecCc-----CEEE
Confidence 99999998889988865 46898888 88999999999 99999999998754 2322 111111 2445
Q ss_pred eccc--cccccccceeEEEEcChhHHHHHHhhhhcc-----------------ccCCChHHHHHHHHH-hcccCCChHHH
Q 018665 179 NGFS--KAFAMTGWRLGYIAGPKHFVAACNKIQSQF-----------------TSGASSISQKAGVAA-LGLGYAGGEVV 238 (352)
Q Consensus 179 ~s~s--K~~g~~g~~~g~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~-l~~~~~~~~~~ 238 (352)
.|++ |.++ +|.+.++++.++++.++++...... ..+.|.......++. +.. .+.+
T Consensus 175 ~Sf~~~K~l~-~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~q----l~~l 249 (375)
T PRK11706 175 FSFHETKNYT-AGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQ----LEAA 249 (375)
T ss_pred EeCCCCcccc-ccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHH----HHHH
Confidence 5655 9997 6777778888888888766544210 112332212111111 111 3445
Q ss_pred HHHHHHHHHHHHHHHHHhcccC--C-ceec-CCC----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec
Q 018665 239 SKMVKAFRERRDFLVKSFGELE--G-VKMS-EPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 310 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~~--g-~~~~-~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~ 310 (352)
++..++-+++.+.+.+.|.+++ + +... .+. ...++++.+++.. +.+++.+.|.++ ||.+.
T Consensus 250 ~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~r~~l~~~L~~~-gI~~~ 317 (375)
T PRK11706 250 DRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDLE-----------DRSALINFLKEA-GIMAV 317 (375)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCcC-----------CHHHHHHHHHHC-CCCcc
Confidence 6666667777778888887765 2 3322 121 2334556665421 678999998876 88764
Q ss_pred cCC----C------CC-----C-------CCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 311 PGD----A------FG-----D-------DTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 311 ~g~----~------~~-----~-------~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
... . +. . ...+-+.+.. +++|++..++.|++++
T Consensus 318 ~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 318 FHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred ccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 321 0 00 0 1246666554 8899999999998875
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-22 Score=179.51 Aligned_cols=285 Identities=11% Similarity=0.123 Sum_probs=191.7
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEE
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~ 86 (352)
.+...+++ +++|++. ..+++++++|+++|+..++ .++++||+|+++.+.|......+.....+. .
T Consensus 53 ~p~~~~le------~~lA~le-------g~~~~v~~~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~-~ 117 (364)
T PRK07269 53 NPTRAKLE------ETLAAIE-------SADYALATSSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEG-R 117 (364)
T ss_pred CccHHHHH------HHHHHHh-------CCCeEEEeCCHHHHHHHHH-HHhCCCCEEEEecCCcCchHHHHHHHHhcC-c
Confidence 45556677 9999997 4789999999999999888 466899999999999987665443321110 0
Q ss_pred ecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccc
Q 018665 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 87 i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
+.+ .+..|++++++++++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|+++.... ...++
T Consensus 118 ~~~----~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~d---i~~I~~la~~~-gi~vvvD~t~~~~~----~~~pl- 184 (364)
T PRK07269 118 FHF----TYANTEEELIAAIEEDTDIVYIETPTNPLMVEFD---IEKVAKLAHAK-GAKVIVDNTFYSPI----YQRPI- 184 (364)
T ss_pred EEE----EecCCHHHHHHhcCcCceEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCcccc----cCCch-
Confidence 110 1235889999999999999999999999999998 99999999999 99999999975311 11222
Q ss_pred cCCCCCCceEEEecccccccccc-ceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
. .+-++++.|++|.++..| .=.|++++ ++++.++++......+...+++....+...|+. +..+.++
T Consensus 185 ~----~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~t-------L~~r~~~ 253 (364)
T PRK07269 185 E----LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKT-------LSLRMER 253 (364)
T ss_pred h----hCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-------HHHHHHH
Confidence 1 244499999999996333 23577776 567777776555444556677776666666654 5666677
Q ss_pred HHHHHHHHHHHhcccCCc-eec-CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHH---------HccCEEeccCC
Q 018665 245 FRERRDFLVKSFGELEGV-KMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL---------DKAQVALVPGD 313 (352)
Q Consensus 245 ~~~~~~~l~~~l~~~~g~-~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~gi~i~~g~ 313 (352)
.+++...+.+.|++.|.+ .+. ++.+|. +.+.+.+. ....++.+.+. ....+.+.|+.
T Consensus 254 ~~~na~~~a~~L~~~p~v~~v~ypg~gg~-~sf~~~~~-----------~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~ 321 (364)
T PRK07269 254 STANAQEVVAFLKKSPAVKEVLYTGKGGM-ISFKVADE-----------TRIPHILNSLKVFTFAESLGGVESLITYPTT 321 (364)
T ss_pred HHHHHHHHHHHHHhCCCccEEeCCCcCcE-EEEEECCH-----------HHHHHHHHhCCcceEccCCCCcCeEeeCCcc
Confidence 788888899999988775 344 344454 44454321 02223333222 11233344433
Q ss_pred CCC-------------CCCeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 314 AFG-------------DDTCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 314 ~~~-------------~~~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
... .++.+|+|++. |+.+.+++.|+.+++
T Consensus 322 ~~~~~~~~~~r~~~Gi~~~liRlsvGl--E~~~dli~dl~~al~ 363 (364)
T PRK07269 322 QTHADIPAEVRHSYGLTDDLLRLSIGI--EDARDLIADLKQALE 363 (364)
T ss_pred cccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHhc
Confidence 211 14689999999 356666666666653
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-22 Score=181.50 Aligned_cols=294 Identities=16% Similarity=0.205 Sum_probs=197.6
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCCeEE
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPV 85 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~~v~ 85 (352)
.+...+++ +.+|++++ .++++.++|+|+|+..++.++ +++||+|+++.++|..+...+...|.+++
T Consensus 32 g~~~~~le------~~la~~~g-------~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v 98 (379)
T PRK11658 32 GPKNQALE------QAFCQLTG-------NQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPV 98 (379)
T ss_pred CHhHHHHH------HHHHHHhC-------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEE
Confidence 34456666 99999986 346888999999999999998 78999999999999999999999999999
Q ss_pred EecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc-cccCCCCccc
Q 018665 86 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTS 164 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~-~~~~~~~~~~ 164 (352)
.++++. +++.+|++++++++++++++|+ |+|++|...+ +++|.++|+++ |+++|+|++++. ..+.+. .
T Consensus 99 ~vd~~~-~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d---~~~i~~~a~~~-gi~vi~D~a~a~g~~~~~~---~ 167 (379)
T PRK11658 99 MVDVDR-DTLMVTPEAIEAAITPRTKAII---PVHYAGAPAD---LDAIRAIGERY-GIPVIEDAAHAVGTYYKGR---H 167 (379)
T ss_pred EEecCC-CcCCcCHHHHHHhcccCCeEEE---EeCCCCCcCC---HHHHHHHHHHc-CCeEEEECCCccCCeECCe---e
Confidence 999874 4466899999999988888887 6667899998 89999999999 999999999984 222221 1
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccc--------------------cCCC--hHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFT--------------------SGAS--SISQ 221 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~--------------------~~~~--~~~~ 221 (352)
+ .. .+..++..+.+|.+ ++.+.|+++. ++++.++++....... .+.| ....
T Consensus 168 ~---g~-~g~~~~Sf~~~K~l--~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l 241 (379)
T PRK11658 168 I---GA-RGTAIFSFHAIKNI--TCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADI 241 (379)
T ss_pred c---CC-CCCEEEeCCCCCcC--cccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHH
Confidence 1 11 22233333445665 4446787776 4677777765331100 0111 1111
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC----CceE-EEeecCCccCCcccCCCCCCChHH
Q 018665 222 KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFY-LFIDFSTYYGSEAEGFGKIENSES 296 (352)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
.++..... .+.+++..++-+++.+.+.+.|+++++..+..+. ..++ ..+.++... .+ .+.++
T Consensus 242 ~AAl~~~q-----l~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~r~~ 308 (379)
T PRK11658 242 NAAIALVQ-----LAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEER----CG----ISRDA 308 (379)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCcc----cc----CCHHH
Confidence 22222222 4567777788888888889999887543332221 1222 223433210 00 16788
Q ss_pred HHHHHHHccCEEeccCC----C---CC-------C-------CCeEEEEeec--CHHHHHHHHHHHHHHHh
Q 018665 297 LCRYLLDKAQVALVPGD----A---FG-------D-------DTCIRISYAA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 297 ~~~~l~~~~gi~i~~g~----~---~~-------~-------~~~iRi~~~~--~~~~l~~~~~~l~~~~~ 344 (352)
+.+.|.++ ||.+.... . |. . ...+.+.+.. +++++++.++.|++++-
T Consensus 309 ~~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~~ 378 (379)
T PRK11658 309 LMEALKER-GIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIAG 378 (379)
T ss_pred HHHHHHHC-CCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 99998865 88754211 0 00 0 1346666555 88999999999998763
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=182.38 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=131.5
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH----HHHHhcCCe
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADAT 83 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~----~~~~~~g~~ 83 (352)
+...+++ +.+|++++ .+..++++|+++++..++.+++++||+|+++.+.|.+.. ..++..|.+
T Consensus 57 p~~~~le------~~lA~l~g-------~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~ 123 (418)
T TIGR01326 57 PTTDVLE------QRIAALEG-------GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIE 123 (418)
T ss_pred hhHHHHH------HHHHHHhC-------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcE
Confidence 3345566 99999985 357889999999999999999999999999999987654 445678999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
++.++.+ |++++++++++++++|++++|+||+|.+.| +++|.++|+++ |+++|+|++++... ...
T Consensus 124 v~~v~~~-------d~~~l~~~l~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~-~i~livD~t~~~~~----~~~ 188 (418)
T TIGR01326 124 VRFVDPD-------DPEEFEKAIDENTKAVFAETIGNPAINVPD---IEAIAEVAHAH-GVPLIVDNTFATPY----LCR 188 (418)
T ss_pred EEEECCC-------CHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCchhh----cCC
Confidence 9998742 789999999989999999999999999999 89999999999 99999999986421 111
Q ss_pred ccccCCCCCCceEEEeccccccccccceeEEEEcCh
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 199 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~ 199 (352)
+ + ..+.++++.|++|.+|.+|.++|++++++
T Consensus 189 ~---l--~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 189 P---I--DHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred c---h--hcCCeEEEECccccccCCccceEEEEEec
Confidence 1 1 13567999999999987899999998854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-22 Score=178.53 Aligned_cols=199 Identities=11% Similarity=0.118 Sum_probs=153.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeE
Q 018665 37 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRL 112 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~ 112 (352)
+.-++++++++|+..++.+++++||+|++++|.|.++.. .++..|+++..++.. +.+.+++++++++++
T Consensus 80 ~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~-------~~e~l~~al~~~Tkl 152 (395)
T PRK05967 80 AGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE-------IGAGIAKLMRPNTKV 152 (395)
T ss_pred CCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC-------CHHHHHHhcCcCceE
Confidence 344666668999999999999999999999999999874 457889999998642 357799999999999
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccc-cccce
Q 018665 113 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWR 191 (352)
Q Consensus 113 i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~g~~ 191 (352)
|++++|+||++...+ +++|+++|+++ |+++|+|++++...+ ..+ .+++.++++.|.+|.++ .++.-
T Consensus 153 V~lesPsNP~l~v~d---l~~I~~la~~~-g~~vvVD~t~a~p~~----~~p-----l~~GaDivv~S~tKy~~Gh~d~~ 219 (395)
T PRK05967 153 VHTEAPGSNTFEMQD---IPAIAEAAHRH-GAIVMMDNTWATPLY----FRP-----LDFGVDISIHAATKYPSGHSDIL 219 (395)
T ss_pred EEEECCCCCCCcHHH---HHHHHHHHHHh-CCEEEEECCccCcee----cCh-----hHcCCCEEEEecccccCCCCCee
Confidence 999999999887777 99999999999 999999999864211 111 12456699999999984 33466
Q ss_pred eEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCc
Q 018665 192 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 262 (352)
Q Consensus 192 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~ 262 (352)
.|+++.+++..+++.......+...+++....+...+++ +.-+.++..++...+.+.|++.|.+
T Consensus 220 ~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~T-------l~lR~~~~~~na~~lA~~L~~hp~v 283 (395)
T PRK05967 220 LGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRT-------MGIRLEHHRKSALEIARWLEGRPDV 283 (395)
T ss_pred EEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCccc-------HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 788888887777776555555566777776655555543 5555666677777888888887765
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-22 Score=179.23 Aligned_cols=213 Identities=14% Similarity=0.158 Sum_probs=159.4
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcCCeEEEecccCCCC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISEN 94 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g~~v~~i~~~~~~~ 94 (352)
|++.+|++.+ .+..+.++|+++|+..++.+++++||+|+++.++|.+.... ++..|+++.+++..
T Consensus 66 lE~~la~leg-------~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~---- 134 (432)
T PRK06702 66 FEQKLAELEG-------GVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPN---- 134 (432)
T ss_pred HHHHHHHHhC-------CCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCC----
Confidence 4499999974 45678899999999999999999999999999999977765 68899999999642
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
.|++++++++++++++|++++|+||++.+.+ +++|+++|+++ |+++|+|+++.. +.+... -.++-
T Consensus 135 --~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~-gi~livD~T~~t--------P~~~~p-l~~GA 199 (432)
T PRK06702 135 --LTADEIVALANDKTKLVYAESLGNPAMNVLN---FKEFSDAAKEL-EVPFIVDNTLAT--------PYLCQA-FEHGA 199 (432)
T ss_pred --CCHHHHHHhCCcCCeEEEEEcCCCccccccC---HHHHHHHHHHc-CCEEEEECCCCc--------hhhCCh-hhcCC
Confidence 5889999999999999999999999999999 99999999999 999999999742 222221 12355
Q ss_pred eEEEeccccccccccceeEEEEc-C----------hhH---------------------HHH-HHhhhhccccCCChHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAG-P----------KHF---------------------VAA-CNKIQSQFTSGASSISQ 221 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~-~----------~~~---------------------~~~-~~~~~~~~~~~~~~~~~ 221 (352)
+|++.|++|.+|..+--+|.+++ . ..+ +.+ .......++..++++..
T Consensus 200 DIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a 279 (432)
T PRK06702 200 NIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNA 279 (432)
T ss_pred CEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHH
Confidence 59999999976433333333222 1 111 111 11223344567888888
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCcee
Q 018665 222 KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 264 (352)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 264 (352)
..+...|++ +..+.++..++...+.+.|++.|.+..
T Consensus 280 ~l~~rgL~T-------l~lR~~r~~~Na~~la~~L~~~p~V~~ 315 (432)
T PRK06702 280 YISNIGLET-------LHLRMERHSENALAVAKWLADHERIEW 315 (432)
T ss_pred HHHHhccCc-------HHHHHHHHHHHHHHHHHHHHhCCCcce
Confidence 877777765 444455556888889999988876553
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-22 Score=181.68 Aligned_cols=289 Identities=13% Similarity=0.118 Sum_probs=194.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHH-hcCC-------------eEEEecccCCCC---cc
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMAR-IADA-------------TPVILPTRISEN---FL 96 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~-~~g~-------------~v~~i~~~~~~~---~~ 96 (352)
.+.++++++|++|++.+++... ....+|+.....|++....+. ..+. .+..++.+.... ..
T Consensus 101 ~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 180 (421)
T PRK06777 101 PAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVE 180 (421)
T ss_pred CceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHH
Confidence 3689999999999999998642 233578888888887764333 2221 011122221100 01
Q ss_pred cCHHHHHhhcc-----CCeeEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCC
Q 018665 97 LDPKVLESKLT-----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 170 (352)
Q Consensus 97 ~d~~~l~~~l~-----~~~~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~ 170 (352)
.+++.+++.+. +++.++++...++..|. ++|.+.+++|.++|+++ |+++|+||++.++.++|. ..+......
T Consensus 181 ~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~g~-~~~~~~~~~ 258 (421)
T PRK06777 181 EALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEH-GILLIADEVQTGFARTGK-LFAMEYYDV 258 (421)
T ss_pred HHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCccCCc-hhhhhhcCC
Confidence 23566777663 35677777777888885 57899999999999999 999999999999877664 223332222
Q ss_pred CCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHH
Q 018665 171 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 250 (352)
Q Consensus 171 ~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
..+ +.+++|.++ +|+|+|++++++++++.+.......+++.+++.+.++.++++.. +. +++.++++++.+
T Consensus 259 ~pD----iv~~sK~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~----~~-~~l~~~~~~~g~ 328 (421)
T PRK06777 259 KPD----LITMAKSLG-GGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVI----AE-EKLCQRALILGA 328 (421)
T ss_pred CCC----EEeeehhhc-CCCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHH----Hh-ccHHHHHHHHHH
Confidence 112 447999999 89999999999999888776556667889999999999999751 11 355666666667
Q ss_pred HHHHHhccc----CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEee
Q 018665 251 FLVKSFGEL----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326 (352)
Q Consensus 251 ~l~~~l~~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~ 326 (352)
++.+.|+++ +.+..+.+.+.++ .+++..... +.........+.+.++++ ||.+.|+..+ .+++|+.++
T Consensus 329 ~l~~~L~~l~~~~~~i~~vrg~G~~~-~i~~~~~~~----~~~~~~~~~~l~~~~~~~-Gv~i~~~~~~--g~~lr~~pp 400 (421)
T PRK06777 329 HLVEVLEKAKASCPAIVDIRARGSMV-AVEFNDPQT----GKPSPEFTRQYQRQALEE-GLLLLSCGVH--GNVIRFLYP 400 (421)
T ss_pred HHHHHHHHHHHhCCCeEEecCceEEE-EEEEecCcc----CCccHHHHHHHHHHHHhC-CeEEeecCCC--CCEEEEeCC
Confidence 777766653 4445556666665 343322100 000000134455555654 9999997655 369999997
Q ss_pred c--CHHHHHHHHHHHHHHHh
Q 018665 327 A--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 327 ~--~~~~l~~~~~~l~~~~~ 344 (352)
. +++++++++++|++++.
T Consensus 401 l~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 401 LTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 5 99999999999999874
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=181.96 Aligned_cols=284 Identities=13% Similarity=0.115 Sum_probs=193.7
Q ss_pred CcEEEeCChHHHHHHHHHHhcC---------CCCEEEecCCCCCChHH-HHHhcCCeEE---EecccCC--CCcccCHHH
Q 018665 37 DQILVSNGAKQSILQAVLAVCS---------PGDEVIIPAPFWVSYPE-MARIADATPV---ILPTRIS--ENFLLDPKV 101 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~~---------~~~~vl~~~~~~~~~~~-~~~~~g~~v~---~i~~~~~--~~~~~d~~~ 101 (352)
+.+++++||++|++.+++.... +..+|+....+|++... .+...+.... +-+.+.. .-.-.|++.
T Consensus 99 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 178 (408)
T PRK04612 99 EKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEA 178 (408)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHH
Confidence 7899999999999999986431 12468888888887653 3322221110 0111100 000127888
Q ss_pred HHhhccCCeeEEEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEe
Q 018665 102 LESKLTEKSRLLILCSPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 179 (352)
Q Consensus 102 l~~~l~~~~~~i~i~~p~nptG~~~--~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (352)
+++.++++..+.++..|.+++|.++ +.+++++|.++|+++ |+++|+||++.++.+.|.. +... ..+..+.+.
T Consensus 179 l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~~---~a~~--~~~~~pdi~ 252 (408)
T PRK04612 179 LEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQH-DALLVLDEIQCGMGRTGTL---FAHW--QEQVTPDIV 252 (408)
T ss_pred HHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCch---hhhh--hcCCCCCEE
Confidence 9988865556666666766565443 367999999999999 9999999999988766532 1111 124456789
Q ss_pred ccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc
Q 018665 180 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 259 (352)
Q Consensus 180 s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 259 (352)
+++|.+| +|+++|++++++++++.+.......+++.+++.+.++.++++.. + -+++.++.+++-+++.+.|+++
T Consensus 253 t~~K~l~-~G~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~----~-~~~l~~~~~~~g~~l~~~l~~l 326 (408)
T PRK04612 253 TLAKALG-GGFPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKL----A-SPQIAANVARQSAALRAGLEAL 326 (408)
T ss_pred EEcchhc-CCCceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHH----H-hccHHHHHHHHHHHHHHHHHHH
Confidence 9999998 89999999999988887766555567789999999999999762 1 1345555666666666666543
Q ss_pred ----CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHH
Q 018665 260 ----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQ 333 (352)
Q Consensus 260 ----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~ 333 (352)
+.+..+. ..|.++.+.+..... ..+..+.+.+.++ |+.+.+. ..+.+|+.++. +++|++
T Consensus 327 ~~~~~~i~~vr-g~Gl~~~i~~~~~~~---------~~a~~i~~~l~~~-Gvlv~~~----g~~~lRl~Ppl~it~eeid 391 (408)
T PRK04612 327 NAEFGVFAQVR-GRGLMLGAVLAPAHA---------GQAGAILDLAAEH-GLLLLQA----GPDVLRFVPALNLTDAELA 391 (408)
T ss_pred HhhCCCeeeee-ccceEEEEEecCchh---------hHHHHHHHHHHHC-CeEEeeC----CCCEEEEcCCccCCHHHHH
Confidence 2222333 335556666532100 1356788888865 9998764 24889999887 999999
Q ss_pred HHHHHHHHHHhhhC
Q 018665 334 AAVERIKKGLLTLR 347 (352)
Q Consensus 334 ~~~~~l~~~~~~~~ 347 (352)
+++++|++++.++-
T Consensus 392 ~~l~~l~~~l~~~~ 405 (408)
T PRK04612 392 DGLARLRLALADYV 405 (408)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999997653
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-22 Score=180.22 Aligned_cols=211 Identities=15% Similarity=0.108 Sum_probs=155.3
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH---HHHHhcCCeEEEecccCCCCc
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISENF 95 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~---~~~~~~g~~v~~i~~~~~~~~ 95 (352)
|++.+|++.+ .+..++++++++|+..++.+++++||+|+++++.|..+. ..++..|.+++.++..
T Consensus 52 lE~~la~leg-------~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~----- 119 (397)
T PRK05939 52 LEAKITKMEG-------GVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT----- 119 (397)
T ss_pred HHHHHHHHhC-------CCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC-----
Confidence 3399999875 444566667799999999999999999999999998754 3567789999999752
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
|++++++++++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|++++... .+. +...+.+
T Consensus 120 --d~e~l~~~l~~~tklV~vesp~NptG~v~d---l~~I~~la~~~-gi~livD~t~a~~~-------~~~--~~~~gaD 184 (397)
T PRK05939 120 --DVQNVAAAIRPNTRMVFVETIANPGTQVAD---LAGIGALCRER-GLLYVVDNTMTSPW-------LFR--PKDVGAS 184 (397)
T ss_pred --CHHHHHHhCCCCCeEEEEECCCCCCCCHHh---HHHHHHHHHHc-CCEEEEECCccccc-------ccC--ccccCCE
Confidence 789999999999999999999999999988 99999999999 99999999985311 111 1113567
Q ss_pred EEEeccccccccccceeEEEEcChhH----------------------HHHHHh-hhhccccCCChHHHHHHHHHhcccC
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKHF----------------------VAACNK-IQSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~~----------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
+++.|++|.++..|.++|+++.++.. +..+.. .........++.....+...++
T Consensus 185 ivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~--- 261 (397)
T PRK05939 185 LVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAIGAE--- 261 (397)
T ss_pred EEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcC---
Confidence 99999999998778898998764211 111111 1123344556655554444444
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCce
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
.+..+.++..++...+.+.|++.|.+.
T Consensus 262 ----tl~~R~~~~~~na~~la~~L~~~p~V~ 288 (397)
T PRK05939 262 ----TLALRVDRSCSNALALAQFLEAHPKVA 288 (397)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 345555556668888888888776653
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-22 Score=181.89 Aligned_cols=210 Identities=12% Similarity=0.135 Sum_probs=153.7
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCCeEEEecccCCCC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISEN 94 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~~v~~i~~~~~~~ 94 (352)
|++.+|++. ..+..++++|+++++..++ .++++||+|+++.+.|..+.. .+...|.+++.++.
T Consensus 138 LE~~lA~le-------g~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~----- 204 (464)
T PLN02509 138 LESLLAKLD-------KADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT----- 204 (464)
T ss_pred HHHHHHHHh-------CCCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCC-----
Confidence 336666665 3567778888899986555 578999999999999998863 44578999988863
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
.|++++++++++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|++++.... + .++ ..+.
T Consensus 205 --~d~e~l~~ai~~~TklV~lesPsNPtG~i~D---l~~I~~lAk~~-g~~lIVD~A~a~~~~-~---~pl-----~~ga 269 (464)
T PLN02509 205 --TNLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKIAEMAHAQ-GALVLVDNSIMSPVL-S---RPL-----ELGA 269 (464)
T ss_pred --CCHHHHHHhCCcCCeEEEEECCCCCCCCHHH---HHHHHHHHHHc-CCEEEEECCcccccc-C---Chh-----hcCC
Confidence 2789999999989999999999999999877 99999999999 999999999864221 1 111 1244
Q ss_pred eEEEecccccccccc-ceeEEEEcCh-hHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMTG-WRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g-~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
++++.|++|.++.+| .-.|+++++. .+...++..+.......+++....+...+ +.+..+.++.+++...+
T Consensus 270 Divv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L-------~tL~~R~~r~~~nA~~l 342 (464)
T PLN02509 270 DIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI-------KTMALRIEKQQENARKI 342 (464)
T ss_pred cEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhh-------hhHHHHHHHHHHHHHHH
Confidence 599999999996333 3367777644 44555444433333345665544444444 44667778888889999
Q ss_pred HHHhcccCCce
Q 018665 253 VKSFGELEGVK 263 (352)
Q Consensus 253 ~~~l~~~~g~~ 263 (352)
.+.|++.|.+.
T Consensus 343 a~~L~~~p~V~ 353 (464)
T PLN02509 343 AMYLSSHPRVK 353 (464)
T ss_pred HHHHhcCCCcc
Confidence 99999887764
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=179.48 Aligned_cols=290 Identities=13% Similarity=0.143 Sum_probs=193.0
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHh-cC-------------CeEEEecccCCCCccc---
Q 018665 37 DQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-AD-------------ATPVILPTRISENFLL--- 97 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~-~g-------------~~v~~i~~~~~~~~~~--- 97 (352)
+.+++++|+++|++.+++... ....+|+.....|++....... .+ ..+..+|.+.... ..
T Consensus 102 ~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~ 180 (425)
T PRK07495 102 KKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELH-GVSVE 180 (425)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccc-cccHH
Confidence 689999999999999998642 2345788888878776432211 11 1334444442211 12
Q ss_pred -CHHHHHhhcc-----CCeeEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCC
Q 018665 98 -DPKVLESKLT-----EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 170 (352)
Q Consensus 98 -d~~~l~~~l~-----~~~~~i~i~~p~nptG-~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~ 170 (352)
+++.+++.+. +++++|++...+..+| ..+|.+.+++|.++|++| |+++|+||++.++.++|.. .....
T Consensus 181 ~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tG~gr~G~~-~a~~~--- 255 (425)
T PRK07495 181 QSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQH-GILLIADEVQTGFARTGKL-FAMEH--- 255 (425)
T ss_pred HHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhcCCcCCCc-eeecc---
Confidence 2445566553 3567777766655578 457899999999999999 9999999999988776642 11211
Q ss_pred CCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHH
Q 018665 171 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 250 (352)
Q Consensus 171 ~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
.+....+.+++|.++ +|+++|++++++++++.+.......+++.|++.++++.++++.-. . .++.++.+++.+
T Consensus 256 -~gv~pDi~tlsK~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~--~---~~l~~~~~~~g~ 328 (425)
T PRK07495 256 -HEVAADLTTMAKGLA-GGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIE--E---EDLCERANQLGN 328 (425)
T ss_pred -cCCCCCEEeehhhhc-CCccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHH--h---chHHHHHHHHHH
Confidence 233455889999998 899999999999998887655556678899999998888876511 1 123334444444
Q ss_pred HHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEee
Q 018665 251 FLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326 (352)
Q Consensus 251 ~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~ 326 (352)
++.+.|++ +|.+.-+.. .|.++++++.+....... ......+.+.++++ |+.+.+.+. ..+.+|+.++
T Consensus 329 ~l~~~L~~l~~~~~~i~~vrG-~Gl~~~iel~~~~~~~~~----~~~~~~~~~~~~~~-Gvl~~~~g~--~~~~~r~~Pp 400 (425)
T PRK07495 329 RLKQRLASLRETVPEIADIRG-PGFMNAVEFNDADSGLPS----AEFANRVRLKALEK-GLILLTCGV--HGNVIRFLAP 400 (425)
T ss_pred HHHHHHHHHHhhCCCeeeeec-CceEEEEEEecCCCCCcc----HHHHHHHHHHHHHC-CeEEeecCC--CCCEEEEeCC
Confidence 44444443 343333333 388899988432110000 00134677777765 898865322 1478999988
Q ss_pred c--CHHHHHHHHHHHHHHHhhhC
Q 018665 327 A--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 327 ~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
. +++++++++++|++++++++
T Consensus 401 l~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 401 ITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred CccCHHHHHHHHHHHHHHHHHHh
Confidence 7 99999999999999998765
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-22 Score=178.64 Aligned_cols=216 Identities=10% Similarity=0.120 Sum_probs=157.8
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCCe
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADAT 83 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~~ 83 (352)
+...+++ +.+|++.+ ... .++++++++++..++ .++++||+|+++.|.|.+... .++..|++
T Consensus 50 p~~~~Le------~~lA~l~g------~~~-~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~ 115 (377)
T PRK07671 50 PTRAALE------ELIAVLEG------GHA-GFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIE 115 (377)
T ss_pred hHHHHHH------HHHHHHhC------CCc-eEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeE
Confidence 3345566 99999985 233 455666778887655 577899999999999985543 44568999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
++.++. .|++++++++++++++|++++|+||+|.+.+ +++|.++|+++ |+++|+|++++...+. .
T Consensus 116 v~~v~~-------~d~~~l~~ai~~~tklV~le~P~NPtg~~~d---l~~I~~la~~~-g~~lvvD~a~~~~~~~----~ 180 (377)
T PRK07671 116 HTFVDT-------SNLEEVEEAIRPNTKAIYVETPTNPLLKITD---IKKISTIAKEK-GLLTIVDNTFMTPYWQ----S 180 (377)
T ss_pred EEEECC-------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCCccccC----C
Confidence 998874 2889999999989999999999999999998 99999999999 9999999998642211 1
Q ss_pred ccccCCCCCCceEEEecccccccccc-ceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
++ ..+.++++.|++|.+|.++ .-.|++++ ++++++++...+.......++.....+...+ +.+..+
T Consensus 181 p~-----~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l-------~tl~~R 248 (377)
T PRK07671 181 PI-----SLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGL-------KTLGIR 248 (377)
T ss_pred hh-----hhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCc-------ChHHHH
Confidence 11 1244599999999996333 23565665 5678888877666555556665555444333 335556
Q ss_pred HHHHHHHHHHHHHHhcccCCcee
Q 018665 242 VKAFRERRDFLVKSFGELEGVKM 264 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~ 264 (352)
.++..++...+.+.|++.|++..
T Consensus 249 ~~~~~~na~~la~~L~~~~~v~~ 271 (377)
T PRK07671 249 MEEHETNSRAIAEFLNNHPAVNK 271 (377)
T ss_pred HHHHHHHHHHHHHHHHcCCCeeE
Confidence 77777888899999988776533
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-22 Score=184.56 Aligned_cols=309 Identities=18% Similarity=0.152 Sum_probs=200.9
Q ss_pred CCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHH--HH-HhcCCCC----EEEecCCCCCChHHHHH
Q 018665 7 SQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQA--VL-AVCSPGD----EVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~--~~-~l~~~~~----~vl~~~~~~~~~~~~~~ 78 (352)
..|..+++ ..+.+++. ..| ++...+..++|+++.+..+ ++ .+.++|| +|+++.+.|+.+...++
T Consensus 108 sqG~lel~------~~~~~~la~l~G--~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~ 179 (481)
T PRK04366 108 VQGALELM------YELQEWLKEITG--MDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAA 179 (481)
T ss_pred hhHHHHHH------HHHHHHHHHHhC--CCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHH
Confidence 34555666 55555554 334 3344454445555444422 22 2345555 99999999999999999
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
..|.+++.++++ .++.+|++.|++++++++++|++++|+ |+|.. ...+++|+++|+++ |+++++|+++.....
T Consensus 180 ~~G~~vv~v~~~--~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~-gal~iVD~a~~~~~~- 252 (481)
T PRK04366 180 MAGFKVVEIPSN--EDGLVDLEALKAAVGEDTAALMLTNPN-TLGLF--ERNILEIAEIVHEA-GGLLYYDGANLNAIL- 252 (481)
T ss_pred HcCCEEEEeecC--CCCCcCHHHHHhhcccCCeEEEEeCCC-Ccccc--chHHHHHHHHHHHc-CCEEEEEecChhhhc-
Confidence 999999999985 346789999999999899999999988 89965 23499999999999 999999999853211
Q ss_pred CCCccccccCCCCCCceEEEeccccccccc----cceeEEEEcChhHHHHHHhhh-------------------hccccC
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMT----GWRLGYIAGPKHFVAACNKIQ-------------------SQFTSG 215 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----g~~~g~l~~~~~~~~~~~~~~-------------------~~~~~~ 215 (352)
+. .. +...+-+++++|.+|++|.| |..+|++.+++++.+.+.... +...++
T Consensus 253 g~--~~----~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t 326 (481)
T PRK04366 253 GK--AR----PGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFY 326 (481)
T ss_pred cc--CC----ccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCccccc
Confidence 11 11 12245669999999998633 456889888887776652100 000111
Q ss_pred CChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE-EEeecCCccCCcccCCCCCCCh
Q 018665 216 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY-LFIDFSTYYGSEAEGFGKIENS 294 (352)
Q Consensus 216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~ 294 (352)
.+.....++...+.. ++.+.++++.++..++.+++.+.|+++..+.+ +...+. +.+.++.. ...+ .+.
T Consensus 327 ~~~l~~~~a~~~l~~--~G~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~~--~~~~~~~~~~~~~~~---~~~g----~~~ 395 (481)
T PRK04366 327 GNFGVLVRAYAYIRS--LGAEGLREVSEDAVLNANYLKARLKDIYDLPY--DRPCMHEFVLSGKKL---KETG----VRT 395 (481)
T ss_pred CchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHhhCcccC--CCCeeEEEEEECccc---cccC----CCH
Confidence 122222333333332 23566777778888889999999987623322 211111 22333210 0011 167
Q ss_pred HHHHHHHHHccCEEeccCCCC-CCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 295 ESLCRYLLDKAQVALVPGDAF-GDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 295 ~~~~~~l~~~~gi~i~~g~~~-~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.++.++|.++ ||.+...... ...+.+|++++. +.+||+++++.|+++.++...
T Consensus 396 ~~v~~~L~~~-Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 396 LDIAKRLLDY-GFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred HHHHHHHHHC-CccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8999999976 8876421111 125689999986 889999999999999877654
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-22 Score=181.31 Aligned_cols=276 Identities=16% Similarity=0.171 Sum_probs=191.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----------CCCCEEEecCCCCCCh-HHHHHhcCC------------eEEEecccCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVC----------SPGDEVIIPAPFWVSY-PEMARIADA------------TPVILPTRIS 92 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~----------~~~~~vl~~~~~~~~~-~~~~~~~g~------------~v~~i~~~~~ 92 (352)
.+.++++++|++|++.+++.+. ...+.|+....+|++. ...+...+. .+..++.
T Consensus 94 ~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 170 (401)
T TIGR01885 94 YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY--- 170 (401)
T ss_pred CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC---
Confidence 4689999999999999998752 2246788788887753 444443221 1222221
Q ss_pred CCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccC
Q 018665 93 ENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 168 (352)
Q Consensus 93 ~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~ 168 (352)
.|++.|++.++ ++..+++++.+++++|...| .+.+++|.++|++| |+++|+||+|.++.++|.. ... ..
T Consensus 171 ----~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~-~~lli~DEv~~g~g~~G~~-~~~-~~ 243 (401)
T TIGR01885 171 ----NNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKH-NVLLIADEIQTGLGRTGKL-LCV-DH 243 (401)
T ss_pred ----CCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchh-hHH-hh
Confidence 26888888774 46678888888999999886 44799999999999 9999999999887666532 121 11
Q ss_pred CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Q 018665 169 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248 (352)
Q Consensus 169 ~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 248 (352)
....++ + .+++|.++.+++|+|++++++++++.+.......+++.+++.+.++.++++.. .+ +.+.++.+++
T Consensus 244 ~~~~~d-i--~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i---~~--~~l~~~~~~~ 315 (401)
T TIGR01885 244 ENVKPD-I--VLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVL---EE--EKLAENAEKL 315 (401)
T ss_pred cCCCCC-E--EEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHH
Confidence 111122 2 24679998555899999999999888765334445677899999999988752 11 1344566777
Q ss_pred HHHHHHHhcccC-Cc-eecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEee
Q 018665 249 RDFLVKSFGELE-GV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326 (352)
Q Consensus 249 ~~~l~~~l~~~~-g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~ 326 (352)
.+++.+.|+++. ++ ..+.+ .|.+..+.++.... + ..+.++++.|.++ ||.+.|+. ++.+|++++
T Consensus 316 ~~~~~~~L~~l~~~~~~~~~g-~g~~~~i~~~~~~~----~----~~~~~l~~~l~~~-Gv~v~~~~----~~~lRi~p~ 381 (401)
T TIGR01885 316 GEIFRDQLKKLPKPIITEVRG-RGLLNAIVIDESKT----G----RTAWDLCLKLKEK-GLLAKPTH----GNIIRLAPP 381 (401)
T ss_pred HHHHHHHHHhccCCceeEEee-cCeeEEEEeccCcc----h----hHHHHHHHHHHhC-CEEEEecC----CCEEEEeCC
Confidence 888888888772 22 22223 34444444433200 0 0467899998865 99997752 678999987
Q ss_pred c--CHHHHHHHHHHHHHHH
Q 018665 327 A--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 327 ~--~~~~l~~~~~~l~~~~ 343 (352)
. +++++++++++|++++
T Consensus 382 l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 382 LVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred ccCCHHHHHHHHHHHHHHh
Confidence 5 9999999999999876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-22 Score=184.16 Aligned_cols=280 Identities=15% Similarity=0.127 Sum_probs=186.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-----C----C-CEEEecCCCCCChHHHHHhcCC-------------eEEEecccCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS-----P----G-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRIS 92 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~-----~----~-~~vl~~~~~~~~~~~~~~~~g~-------------~v~~i~~~~~ 92 (352)
.+.++++++|++|++.+++.... + + ..|+....+|++.......... .+..++.
T Consensus 132 ~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~--- 208 (474)
T PLN02624 132 YDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF--- 208 (474)
T ss_pred CCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC---
Confidence 46899999999999999975432 1 2 3577777777776433222111 1122221
Q ss_pred CCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHH-HHHHHHHHHHhCCCEEEEecccccccccCCCCccccccC
Q 018665 93 ENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 168 (352)
Q Consensus 93 ~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~-~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~ 168 (352)
.|++.+++.++ +++++|+++.++|++|.++|.+ ++++|.++|++| |+++|+||+|.+++++|... .. ..
T Consensus 209 ----~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~-gillI~DEv~tG~GrtG~~~-a~-~~ 281 (474)
T PLN02624 209 ----GDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKH-NVLMIADEIQTGLARTGKML-AC-DW 281 (474)
T ss_pred ----CCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCcCcCcchh-hH-Hh
Confidence 26788888885 4678889999999999987666 699999999999 99999999999876666421 11 11
Q ss_pred CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Q 018665 169 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248 (352)
Q Consensus 169 ~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 248 (352)
.... ..+.+++|.+|.+++++|+++.++++++.+.......+++.+++.+.++.++++... . .++.++..++
T Consensus 282 ~~i~---pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~--~---~~l~~~~~~~ 353 (474)
T PLN02624 282 EEVR---PDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQ--D---EKLAERSAKL 353 (474)
T ss_pred cCCC---CCEEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHH--h---chHHHHHHHH
Confidence 1111 224447899985558999999999888877655555666789999999999987511 1 1233334444
Q ss_pred HHHHHHHhcc----cCC-ceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEE
Q 018665 249 RDFLVKSFGE----LEG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 323 (352)
Q Consensus 249 ~~~l~~~l~~----~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi 323 (352)
.+.+.+.|++ ++. +..+.+. |.++.+.+..... . ...+.++++.|.++ ||.+.|+ .++++|+
T Consensus 354 ~~~l~~~L~~l~~~~~~~i~~vrg~-G~~~~i~l~~~~~---~----~~~a~~~~~~L~e~-GV~v~p~----~~~~lR~ 420 (474)
T PLN02624 354 GQELRDQLQKIQKQFPKLIKEVRGR-GLLNAVVLNSPKL---G----PVSAYDVCLKLKER-GLLAKPT----HDTIIRL 420 (474)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEee-EEEEEEEecCCCc---C----hHHHHHHHHHHHhC-CeEEecC----CCCEEEE
Confidence 4444444443 222 3333344 4444444432100 0 01356788888765 9999885 3678999
Q ss_pred Eeec--CHHHHHHHHHHHHHHHhhh
Q 018665 324 SYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 324 ~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+++. ++++|++++++|+++++..
T Consensus 421 ~p~l~~t~e~id~~l~~L~~~l~~~ 445 (474)
T PLN02624 421 APPLSISEDELQECSKALSDVLEHD 445 (474)
T ss_pred ECCccCCHHHHHHHHHHHHHHHHHH
Confidence 9865 9999999999999988654
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=175.10 Aligned_cols=292 Identities=13% Similarity=0.145 Sum_probs=199.3
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChH-HHHHhcC-------------CeEEEecccCCC--Ccc
Q 018665 35 TPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYP-EMARIAD-------------ATPVILPTRISE--NFL 96 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~-~~~~~~g-------------~~v~~i~~~~~~--~~~ 96 (352)
..+.++++++|++|++.+++... .....|+.....|++.. ..+...+ ..+..+|.+... .+.
T Consensus 116 ~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~ 195 (447)
T COG0160 116 GLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFG 195 (447)
T ss_pred cCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCccc
Confidence 35789999999999999998742 23456777776666544 3333221 235555555321 111
Q ss_pred --------cCHHHHHhhcc------CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 97 --------LDPKVLESKLT------EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 97 --------~d~~~l~~~l~------~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
-..+.+++.+. .++.++++...+...|.. .|.++++++.++|+++ |+++|+||++.+++.+|+
T Consensus 196 ~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~-gillI~DEVQtG~GRTG~- 273 (447)
T COG0160 196 IGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREH-GILLIADEVQTGFGRTGK- 273 (447)
T ss_pred CchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcccc-
Confidence 12334555342 267888888888888866 5677899999999999 999999999999998883
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
...+....- ..-+-+++|.+| +|+++|.++.++++.+ .......++++.|+++.+++.+.|+... -+.+
T Consensus 274 ~fa~E~~gv----~PDivt~aK~ig-~G~Pl~avv~r~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie-----~e~L 342 (447)
T COG0160 274 MFAFEHFGV----EPDIVTLAKSLG-GGLPLSAVVGRAEIMD-WPPGGHGGTFGGNPVACAAALAVLDVIE-----EENL 342 (447)
T ss_pred chhhhhcCC----CCCEEEeccccc-CCCceeEEeccHHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHHH-----HccH
Confidence 444444332 233777899999 7999999999999988 5555566679999999999999998521 1244
Q ss_pred HHHHHHHHHHHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC
Q 018665 242 VKAFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~ 317 (352)
.++..+.-+++.+.|.+ .|-+.-+ ...|.++.+++-+....+... .+....+.++++++ |+.+..++. .
T Consensus 343 ~~~a~~~G~~l~~~L~~l~~~~~~IgdV-RG~Glm~giE~v~d~~t~~p~---~~~~~~i~~~~~~~-Glil~~~G~--~ 415 (447)
T COG0160 343 LERAAELGEYLRDRLEELQEKHPLIGDV-RGLGLMIGVELVKDRDTKEPD---AELAAKIVARAFER-GLLLLTCGP--H 415 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCceecc-cccceEEEEEEecCCCCCCCC---HHHHHHHHHHHHHc-CCEEeccCC--C
Confidence 44555555555555544 3322222 234666777764321110000 01356888998877 887766543 2
Q ss_pred CCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 318 DTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 318 ~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.+||.++. ++|++++++++|.+++++.
T Consensus 416 ~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 416 GNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred CcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 6899999988 9999999999999999864
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=175.88 Aligned_cols=207 Identities=13% Similarity=0.124 Sum_probs=148.3
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH----HHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~----~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.+|++.+ .+..+++++++.|+..++ .++++||+|+++++.|.+.. ..++..|++++.++.
T Consensus 57 ~~la~l~g-------~~~al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~------- 121 (380)
T PRK06176 57 ELIADLEG-------GVKGFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT------- 121 (380)
T ss_pred HHHHHHhC-------CCCEEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC-------
Confidence 99999975 334466677788998655 56799999999999997654 345678999888874
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
.|++++++++++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|++++.... ..++ ..+.++
T Consensus 122 ~d~e~l~~ai~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~-gi~vivD~t~a~~~~----~~p~-----~~gaDi 188 (380)
T PRK06176 122 SDLSQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDH-GLLTIVDNTFATPYY----QNPL-----LLGADI 188 (380)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCceecC---HHHHHHHHHHc-CCEEEEECCcccccc----CCcc-----ccCCCE
Confidence 2799999999989999999999999999999 88999999999 999999999875321 1121 134459
Q ss_pred EEecccccccccc-ceeEEEEcC-hhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 177 ~~~s~sK~~g~~g-~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
++.|++|.++.++ .-.|+++.+ +++.++++..+.......++.....+...+. .+..+.++..++...+.+
T Consensus 189 vv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~-------tl~~R~~~~~~~a~~la~ 261 (380)
T PRK06176 189 VVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIK-------TLGLRMEAHQKNALCVAE 261 (380)
T ss_pred EEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccC-------cHHHHHHHHHHHHHHHHH
Confidence 9999999996444 346667764 5666767665554444445555444433332 234444445556667777
Q ss_pred HhcccCCc
Q 018665 255 SFGELEGV 262 (352)
Q Consensus 255 ~l~~~~g~ 262 (352)
.|++.|.+
T Consensus 262 ~L~~~p~v 269 (380)
T PRK06176 262 FLEKHPKV 269 (380)
T ss_pred HHHhCCCe
Confidence 77766554
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=177.33 Aligned_cols=286 Identities=11% Similarity=0.079 Sum_probs=186.3
Q ss_pred cEEE-eCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHH-HHhcC------------CeEEEecccCCCCc-ccCHH
Q 018665 38 QILV-SNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEM-ARIAD------------ATPVILPTRISENF-LLDPK 100 (352)
Q Consensus 38 ~i~~-~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~-~~~~g------------~~v~~i~~~~~~~~-~~d~~ 100 (352)
.+++ +++|++|++.+++... ....+|+.....|++.... +...+ ..+..+|.+..... .-+++
T Consensus 100 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 179 (412)
T TIGR02407 100 KVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIA 179 (412)
T ss_pred eEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHH
Confidence 4655 5899999999998753 2346788888888876533 32221 12333443211000 02466
Q ss_pred HHHhhcc------CCeeEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 101 VLESKLT------EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 101 ~l~~~l~------~~~~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
.+++.+. +++.+|++...+++.|. ++|.+++++|.++|+++ |+++|+||++.+++.+|... ........++
T Consensus 180 ~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GRtG~~~-a~~~~~v~PD 257 (412)
T TIGR02407 180 YFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRH-DILLIVDDIQAGCGRTGTFF-SFEPAGIEPD 257 (412)
T ss_pred HHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchhH-HhcccCCCCC
Confidence 7777774 35677787777888887 57888999999999999 99999999999887666421 1111111122
Q ss_pred ceEEEeccccccccc-cceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMT-GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~-g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
+.+++|.+| + |+|+|++++++++ +.+.......+++.|++...++.++++.-.......+++.+.-+..++.+
T Consensus 258 ----i~~~~K~lg-~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l 331 (412)
T TIGR02407 258 ----IVCLSKSIS-GYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERL 331 (412)
T ss_pred ----EEEechhcc-CCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 456889998 6 9999999998876 55543445567788898888777777631111222222222222222333
Q ss_pred HHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHH
Q 018665 253 VKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLT 330 (352)
Q Consensus 253 ~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~ 330 (352)
.+..++++++.......|.++|+++++.. ....+.+.+.++ ||.+.+... ..+.+|++++. +++
T Consensus 332 ~~l~~~~~~~~~~vrg~Gl~~~l~l~~~~-----------~~~~~~~~~~~~-Gv~v~~~~~--~~~~lr~~p~l~~t~~ 397 (412)
T TIGR02407 332 DRIVAEYPELIKQVRGRGLMQGIECGDGD-----------LAGKIAKAAFEN-GLIIETSGP--NDEVIKLLPPLTIDEE 397 (412)
T ss_pred HHHHhhCCCceEeeecceeEEEEEecChH-----------HHHHHHHHHHHC-CCEEeccCC--CCCEEEEECCCCCCHH
Confidence 33223343333334556888999987531 456788888865 999876432 25789999987 999
Q ss_pred HHHHHHHHHHHHHhh
Q 018665 331 TLQAAVERIKKGLLT 345 (352)
Q Consensus 331 ~l~~~~~~l~~~~~~ 345 (352)
|+++++++|++++++
T Consensus 398 ~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 398 TLQQGLDILEQAVEE 412 (412)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-22 Score=183.17 Aligned_cols=292 Identities=14% Similarity=0.162 Sum_probs=188.9
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHHHHhc-CC------------eEE-----EecccCCCC
Q 018665 35 TPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIA-DA------------TPV-----ILPTRISEN 94 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~~~~-g~------------~v~-----~i~~~~~~~ 94 (352)
..+.+++++|+++|++.+++.... .+++|+..++.|+++...+... +. ... .+..+ .
T Consensus 105 ~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 181 (426)
T PRK00062 105 SIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP--Y- 181 (426)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC--C-
Confidence 357899999999999999987532 3578999999999876333221 10 000 01111 1
Q ss_pred cccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCC
Q 018665 95 FLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 170 (352)
Q Consensus 95 ~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~ 170 (352)
.|++.+++.+. +++++|+++...+.+|...+ .+++++|.++|++| |+++|+||+|.++ ..+. .........
T Consensus 182 --~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~G~-r~g~-~~~~~~~~~ 256 (426)
T PRK00062 182 --NDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEH-GALLIFDEVMTGF-RVAL-GGAQGYYGV 256 (426)
T ss_pred --CCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeechhcc-ccCC-ccHHHHhCC
Confidence 27888888774 36677777766666887775 88899999999999 9999999999987 3332 111111111
Q ss_pred CCCceEEEeccccccccccceeEEEEcChhHHHHHHh---hhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHH
Q 018665 171 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 247 (352)
Q Consensus 171 ~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 247 (352)
.++ +.+++|.++ +|+++|++++++++++.+.. .....+++.+++.++++.++++.... .+..+++.+..+.
T Consensus 257 ~pD----i~~~gK~l~-~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~~~~~~~~~ 330 (426)
T PRK00062 257 TPD----LTTLGKIIG-GGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYEELEALTKR 330 (426)
T ss_pred Ccc----hHhhhhHhh-CCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHH
Confidence 112 578999998 88999999999999888852 22334567899999999999886321 2344444444555
Q ss_pred HHHHHHHHhcccCCceecCCCCceEEEeecCCccCC-cccCCCC-CCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEe
Q 018665 248 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 325 (352)
Q Consensus 248 ~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~ 325 (352)
.++.+.+.+++. ++.......|.++.+.+...... ....... ......+.+.|.++ |+.+.+.. .+.+++++
T Consensus 331 ~~~~l~~~~~~~-~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-Gv~v~~~~----~~~~~~~~ 404 (426)
T PRK00062 331 LAEGLKEAAKKA-GIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDE-GVYLAPSQ----FEAGFVSA 404 (426)
T ss_pred HHHHHHHHHHHc-CCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHC-CeEeecCC----cCceeeec
Confidence 555555544445 43332223344454544321000 0000000 00135788888876 99997742 34678887
Q ss_pred ecCHHHHHHHHHHHHHHHhhh
Q 018665 326 AASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 326 ~~~~~~l~~~~~~l~~~~~~~ 346 (352)
..+++|+++++++|+++++++
T Consensus 405 ~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 405 AHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred cCCHHHHHHHHHHHHHHHHhh
Confidence 779999999999999998764
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-21 Score=175.32 Aligned_cols=291 Identities=10% Similarity=0.115 Sum_probs=189.8
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChH-HHHHhcCC------------eEEEecccCCCC--cc---
Q 018665 37 DQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYP-EMARIADA------------TPVILPTRISEN--FL--- 96 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~-~~~~~~g~------------~v~~i~~~~~~~--~~--- 96 (352)
+.++++++|++|++.+++... ....+|+.....|++.. ..+...+. .+..++.+.... +.
T Consensus 102 ~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (443)
T PRK08360 102 PKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEP 181 (443)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCch
Confidence 689999999999999998742 23357887777777654 33332221 123333221100 00
Q ss_pred -----cCHHHHHhhcc-----CCeeEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 97 -----LDPKVLESKLT-----EKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 97 -----~d~~~l~~~l~-----~~~~~i~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
.+++.+++.+. +++++++++..+||+|..++ .+++++|.++|+++ |+++|+||++.++.++|.. .+.
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~gr~G~~-~a~ 259 (443)
T PRK08360 182 GSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEH-GILLVVDEVQSGLGRTGKW-FAI 259 (443)
T ss_pred hhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCccc-hhh
Confidence 12344555552 46788888766899998876 55899999999999 9999999999998776642 222
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 245 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (352)
..... .++ +.++||.+| +|+|+|++++++++++.+......++++.+++.+.++.++++.-.. + ++.++.
T Consensus 260 ~~~~~-~pD---iitlsK~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~-~----~l~~~~ 329 (443)
T PRK08360 260 EHFGV-EPD---IITLGKPLG-GGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE-K----NLLKRA 329 (443)
T ss_pred hhcCC-CCC---EEEeccccc-CCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH-c----CHHHHH
Confidence 22221 122 336799999 8999999999999999887655566778899999999999875211 1 234444
Q ss_pred HHHHHHHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 246 RERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 246 ~~~~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
+++-+++.+.|++ .+.+.-+. ..|.++-+++.+....+.... ..+..+.+.+.++ |+.+.+. ..+.+
T Consensus 330 ~~~g~~l~~~L~~l~~~~~~v~~vr-g~Gl~~gie~~~~~~~~~~~~---~~~~~~~~~l~~~-Gi~~~~~----~~~~l 400 (443)
T PRK08360 330 EKLGNYTKKRLEEMKKKHELIGDVR-GIGLMIGVDLVKDRETKERAY---EEAAKVVWRAWEL-GLIVTFF----SGNVL 400 (443)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeeee-ccceEEEEEEecCCcccCccH---HHHHHHHHHHHHC-CeEEeec----CCCEE
Confidence 4444444444443 33232233 345556666532110000000 0245677888865 8988653 25789
Q ss_pred EEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 322 RISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 322 Ri~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
|++++. ++++++++++++.++++++..
T Consensus 401 r~~P~l~~t~~~id~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 401 RIQPPLTIEKEVLDEGLDILEEAIEDVEE 429 (443)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 997776 999999999999999988765
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=172.41 Aligned_cols=209 Identities=19% Similarity=0.229 Sum_probs=159.8
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH----hcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~----~~g~~v~~i~~~~~~~~~ 96 (352)
+.+|+.- ..+..+++++|++|+..++.+++++||+|+++...|.+....++ ..|+++.+++.
T Consensus 62 ~~la~Le-------~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~------- 127 (386)
T PF01053_consen 62 QRLAALE-------GGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP------- 127 (386)
T ss_dssp HHHHHHH-------T-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST-------
T ss_pred HHHHHhh-------cccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc-------
Confidence 8888886 46889999999999999999999999999999999999886665 47999998864
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC-EEEEecccccccccCCCCccccccCCCCCCce
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
-|++++++++++++++|++..|.||+..+.+ +++|+++|+++ | +++++|+++.... ...++. ++-+
T Consensus 128 ~d~~~l~~~l~~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~-g~~~~vVDnT~atp~----~~~pL~-----~GaD 194 (386)
T PF01053_consen 128 TDLEALEAALRPNTKLVFLESPSNPTLEVPD---LEAIAKLAKEH-GDILVVVDNTFATPY----NQNPLE-----LGAD 194 (386)
T ss_dssp TSHHHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHT-TT-EEEEECTTTHTT----TC-GGG-----GT-S
T ss_pred hhHHHHHhhccccceEEEEEcCCCccccccc---HHHHHHHHHHh-CCceEEeecccccee----eeccCc-----CCce
Confidence 2899999999999999999999999999999 99999999999 9 9999999986421 111111 3455
Q ss_pred EEEecccccccccc-ceeEEEEcCh--hHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAMTG-WRLGYIAGPK--HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 176 i~~~s~sK~~g~~g-~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
+++.|.+|.++..+ .=.|.++++. ++.+.++......+..+++.....+...+++ +.-+.++..++...+
T Consensus 195 ivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~T-------l~~R~~~~~~nA~~l 267 (386)
T PF01053_consen 195 IVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRT-------LPLRMERQNENAEAL 267 (386)
T ss_dssp EEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTT-------HHHHHHHHHHHHHHH
T ss_pred EEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCc-------HHHHHHHHHHHHHHH
Confidence 99999999995233 3367777554 7888888777777777888877777776655 556666777788889
Q ss_pred HHHhcccCCce
Q 018665 253 VKSFGELEGVK 263 (352)
Q Consensus 253 ~~~l~~~~g~~ 263 (352)
.+.|++.|.+.
T Consensus 268 A~~L~~hp~V~ 278 (386)
T PF01053_consen 268 AEFLEEHPKVK 278 (386)
T ss_dssp HHHHHTSTTEE
T ss_pred HHHHHhCCCCC
Confidence 99999887765
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=176.91 Aligned_cols=211 Identities=12% Similarity=0.133 Sum_probs=153.3
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcCCeEEEecccCCCC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISEN 94 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g~~v~~i~~~~~~~ 94 (352)
|++.+|++.+ .+..++++|+++|++.++.+++++||+|+++...|.+....+ +..|+++++++..
T Consensus 69 le~~lA~l~g-------~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---- 137 (433)
T PRK08134 69 LEERVAALEG-------GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG---- 137 (433)
T ss_pred HHHHHHHHhC-------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC----
Confidence 3499999875 345788999999999999999999999999999998775544 5589999999863
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
|++++++++++++++|++.+|+||+|.+.| +++|+++|+++ |+++|+|+++... ....++ . .+-
T Consensus 138 ---d~~~l~~~i~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~-gi~livD~t~a~~----~~~~pl-~----~Ga 201 (433)
T PRK08134 138 ---DIDGWRAAIRPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEA-GVPLLVDSTFTTP----YLLRPF-E----HGA 201 (433)
T ss_pred ---CHHHHHHhcCCCCeEEEEECCCcccCcccC---HHHHHHHHHHc-CCEEEEECCCccc----ccCCch-h----cCC
Confidence 789999999999999999999999999999 99999999999 9999999998642 111222 1 345
Q ss_pred eEEEeccccccccccceeEEEEcC-hh--------------------------------HHHHHH-hhhhccccCCChHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGP-KH--------------------------------FVAACN-KIQSQFTSGASSIS 220 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~-~~--------------------------------~~~~~~-~~~~~~~~~~~~~~ 220 (352)
++++.|.+|.+|.+|..+|.++.. .. +..+.+ ......+...+++.
T Consensus 202 D~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~ 281 (433)
T PRK08134 202 DLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMN 281 (433)
T ss_pred CEEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHH
Confidence 599999999997666556655432 10 000000 11122233455554
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCce
Q 018665 221 QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 221 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
...+...+ +.+..+.++..++...+.+.|++.|.+.
T Consensus 282 A~l~~~gL-------~tl~~R~~~~~~nA~~la~~L~~~p~V~ 317 (433)
T PRK08134 282 AWQLLQGI-------ETLPLRMERHVANTRKVVAFLASHPAVA 317 (433)
T ss_pred HHHHhcCC-------CcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 44444443 3356666667777888888888776653
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-21 Score=173.58 Aligned_cols=294 Identities=17% Similarity=0.162 Sum_probs=198.8
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
|...+...+++ +.++++++ .++.++++|+++|+..++.++ .++||+|+++.++|..+...++..|.
T Consensus 25 ~~~g~~~~~le------~~la~~~g-------~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~ 91 (380)
T TIGR03588 25 LTQGPTVPAFE------EALAEYVG-------AKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALYCGA 91 (380)
T ss_pred ccCChhHHHHH------HHHHHHHC-------CCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCC
Confidence 33445566777 99999986 234566778999999999998 78999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhcc----CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc-c
Q 018665 83 TPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-Y 157 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~----~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~-~ 157 (352)
+++.+++++ .++.+|++++++.++ +++++|+++ |++|...+ +++|.++|+++ |+++|+|++++... +
T Consensus 92 ~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~t~~v~~~---~~~G~~~~---~~~i~~l~~~~-~~~lI~D~a~a~g~~~ 163 (380)
T TIGR03588 92 KVDFVDIDP-DTGNIDEDALEKKLAAAKGKLPKAIVPV---DFAGKSVD---MQAIAALAKKH-GLKIIEDASHALGAEY 163 (380)
T ss_pred EEEEEecCC-CcCCcCHHHHHHHhhcccCCCceEEEEe---CCCCccCC---HHHHHHHHHHc-CCEEEEECCCcccCcc
Confidence 999999964 346689999999998 678888754 46898888 89999999999 99999999998632 2
Q ss_pred CCCCccccccCCCCCCceEEEeccc--cccccccceeEEEEc-ChhHHHHHHhhhhccc---------------------
Q 018665 158 APATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAG-PKHFVAACNKIQSQFT--------------------- 213 (352)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~s~s--K~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~--------------------- 213 (352)
.+. .+... ..-++.+.|++ |.++ .| ..|+++. ++++.++++.......
T Consensus 164 ~~~---~~g~~---~~~d~~~~S~~~~K~~~-~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 235 (380)
T TIGR03588 164 GGK---PVGNC---RYADATVFSFHPVKIIT-TA-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQE 235 (380)
T ss_pred CCE---eCCCc---cccceEEEecCCCCccc-cc-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeec
Confidence 221 11110 01237777776 8886 33 4566654 5677776654322110
Q ss_pred ----cCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC----CceE-EEeecCCccCCc
Q 018665 214 ----SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFY-LFIDFSTYYGSE 284 (352)
Q Consensus 214 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~----~g~~-~~~~~~~~~~~~ 284 (352)
..++.+........ -..+++..++-+++.+++.+.|.+++++....+. ...+ ..+.++...
T Consensus 236 ~g~n~~m~~l~aa~g~~q-------L~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 305 (380)
T TIGR03588 236 LGFNYRMTDIQAALGLSQ-------LKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEF--- 305 (380)
T ss_pred cccccCccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcC---
Confidence 01111111111111 2335666777788888999999988776654331 1222 223332100
Q ss_pred ccCCCCCCChHHHHHHHHHccCEEeccCCCC-----------C---CC-------CeEEEEeec--CHHHHHHHHHHHHH
Q 018665 285 AEGFGKIENSESLCRYLLDKAQVALVPGDAF-----------G---DD-------TCIRISYAA--SLTTLQAAVERIKK 341 (352)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~-----------~---~~-------~~iRi~~~~--~~~~l~~~~~~l~~ 341 (352)
+ .+.+++.+.|.++ ||.+...... . .+ ..+++.++. +++|+++.++.|++
T Consensus 306 --~----~~r~~l~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~ 378 (380)
T TIGR03588 306 --G----CTRKEVFEALRAA-GIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRK 378 (380)
T ss_pred --C----CCHHHHHHHHHHC-CCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHH
Confidence 0 1678999998765 8877643211 0 01 468888776 89999999999988
Q ss_pred HH
Q 018665 342 GL 343 (352)
Q Consensus 342 ~~ 343 (352)
++
T Consensus 379 ~~ 380 (380)
T TIGR03588 379 VL 380 (380)
T ss_pred hC
Confidence 64
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-21 Score=175.47 Aligned_cols=304 Identities=12% Similarity=0.100 Sum_probs=193.4
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHh-cC-------------Ce
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-AD-------------AT 83 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~-~g-------------~~ 83 (352)
..+|+.+. ..+. ...+.++++++|++|++.+++... ...++|+....+|++....... .+ ..
T Consensus 102 ~~la~~l~~~~p~-~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~ 180 (443)
T PRK06058 102 VAVAEQLNRLTPG-DHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPE 180 (443)
T ss_pred HHHHHHHHHhCCC-CCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCC
Confidence 55556554 2211 112589999999999999998532 2347899999999887743322 11 11
Q ss_pred EEEecccCCCCc----cc--------CHHHHHhhcc-CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEec
Q 018665 84 PVILPTRISENF----LL--------DPKVLESKLT-EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 84 v~~i~~~~~~~~----~~--------d~~~l~~~l~-~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD 149 (352)
+..++.+...+. .. ..+.+++.+. ++++++++...+...|.. .|.+.+++|.++|++| |+++|.|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~-gillI~D 259 (443)
T PRK06058 181 VYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCREN-GVVFIAD 259 (443)
T ss_pred ceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEe
Confidence 222222111110 00 1233444443 466677665555556665 4688999999999999 9999999
Q ss_pred ccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhc
Q 018665 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALG 229 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 229 (352)
|++.++.++|... ........ ++ +.+++|.+| +|+++|++++++++++.+.......+++.|+++++++.++++
T Consensus 260 EV~tGfgRtG~~f-a~~~~gv~-PD---iv~~gK~l~-~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~ 333 (443)
T PRK06058 260 EVQTGFARTGAWF-ACEHEGIV-PD---LITTAKGIA-GGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIE 333 (443)
T ss_pred ccccCCCcChhhh-HHHhcCCC-CC---EEEEccccc-CCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999987766422 11111111 12 445689999 899999999999998888665566788899999999999997
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhccc----CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHcc
Q 018665 230 LGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 305 (352)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (352)
.-. -+++.++.+++.+++.+.|+++ +.+.-+.+.+ .++.+.+...... ... ......+.+.+.++
T Consensus 334 ~~~-----~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G-~~~~i~~~~~~~~-~~~---~~~~~~l~~~~~~~- 402 (443)
T PRK06058 334 TIE-----EDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRG-AMIAIELVKPGTT-EPD---AELTKALAAAAHAA- 402 (443)
T ss_pred HHH-----HcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccc-eEEEEEEecCCCC-CCc---HHHHHHHHHHHHHC-
Confidence 511 1244555556666666666553 2222234444 4444554221000 000 00245677777765
Q ss_pred CEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 306 QVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 306 gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
|+.+.+++.+ .+++|+.++. +++++++++++|++++++
T Consensus 403 Gv~~~~~~~~--~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 403 GVIVLTCGTY--GNVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred CeEEeccCCC--CCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 9999886544 4689998766 999999999999999875
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=169.32 Aligned_cols=210 Identities=11% Similarity=0.079 Sum_probs=164.8
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g~~v~~i~~~~~~~~~ 96 (352)
+.+|++- ..+..++++||++|+..++.+++++||+|+++...|.++...+ +..|+++.+++.
T Consensus 69 ~~la~LE-------g~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~------- 134 (395)
T PRK08114 69 EAMCELE-------GGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP------- 134 (395)
T ss_pred HHHHHHh-------CCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-------
Confidence 8888764 4678888999999999999999999999999999998877554 678999999874
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-CCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
.|.+++++++++++++|++.+|+||+|.+.| +++|+++|+++ ||+++++|++++. +.. .. +..++-+
T Consensus 135 ~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~----p~~----~~-pl~~GaD 202 (395)
T PRK08114 135 LIGADIAKLIQPNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAA----GVL----FK-ALDFGID 202 (395)
T ss_pred CCHHHHHHhcCCCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCcc----ccc----cC-HHHcCCc
Confidence 3778999999999999999999999999999 99999999997 1499999999864 111 11 1124566
Q ss_pred EEEeccccccccc-cceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAMT-GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 176 i~~~s~sK~~g~~-g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
+++.|.+|.++.+ ....|.++.+++..+.+.......+...+++....+.+.+++ +.-+.++..++...+.+
T Consensus 203 ivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-------L~lR~~~~~~na~~va~ 275 (395)
T PRK08114 203 ISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRT-------LGVRLRQHEESSLKVAE 275 (395)
T ss_pred EEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCc-------HHHHHHHHHHHHHHHHH
Confidence 9999999988534 367888888887777666555555666777777766666654 55556677778888888
Q ss_pred HhcccCCce
Q 018665 255 SFGELEGVK 263 (352)
Q Consensus 255 ~l~~~~g~~ 263 (352)
.|++.|.+.
T Consensus 276 ~L~~hp~V~ 284 (395)
T PRK08114 276 WLAEHPEVA 284 (395)
T ss_pred HHHcCCCEe
Confidence 998877654
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=192.26 Aligned_cols=300 Identities=15% Similarity=0.113 Sum_probs=205.2
Q ss_pred HHHHHHHHhcCCCCCCC--cEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHH---HHHhcCCeEEEecccCC--
Q 018665 21 QQFVINLKENGLSYTPD--QILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPE---MARIADATPVILPTRIS-- 92 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~--~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~---~~~~~g~~v~~i~~~~~-- 92 (352)
+.+|++++ ++++ +|++|+|+|++++.++.++ .++||+|++..-.|.+... .++..|+++..++++.+
T Consensus 85 ~~ia~~lg-----a~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~ 159 (805)
T PLN02724 85 QQVLEYFN-----APPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAAN 159 (805)
T ss_pred HHHHHHhC-----CCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccc
Confidence 88888887 5454 5899999999999999887 6788999998777776553 34567999999988622
Q ss_pred ----CCcccCH--HHHHhhc----------cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh-----CCCEEEEeccc
Q 018665 93 ----ENFLLDP--KVLESKL----------TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK-----HPRLLVLSDEI 151 (352)
Q Consensus 93 ----~~~~~d~--~~l~~~l----------~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~-----~~~~~livD~~ 151 (352)
....+++ +.|++.+ .++++++++++.+|.+|..+|.+.++++.+.++. . ++++++|.+
T Consensus 160 ~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g-~~~v~vDaa 238 (805)
T PLN02724 160 QPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSG-RWMVLLDAA 238 (805)
T ss_pred cccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCc-ceEEEeehh
Confidence 1112332 5566653 1356799999999999999994433333332211 2 368999999
Q ss_pred ccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh-----------------------
Q 018665 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI----------------------- 208 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~----------------------- 208 (352)
++. ++.+..+..+ +.++++.|.+|++| +..++|++++++++++.+...
T Consensus 239 Q~~----g~~piDv~~~----~~Dfl~~S~HK~~G-gP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~ 309 (805)
T PLN02724 239 KGC----GTSPPDLSRY----PADFVVVSFYKIFG-YPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERV 309 (805)
T ss_pred hhc----CCCCCChhhc----CCCEEEEecceecc-CCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccH
Confidence 875 4444444433 34599999999997 334689999988877665421
Q ss_pred -hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccC------CceecCCC--------CceEE
Q 018665 209 -QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE------GVKMSEPQ--------GAFYL 273 (352)
Q Consensus 209 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------g~~~~~~~--------~g~~~ 273 (352)
..+..+++|.....++.++++.. ..-.++++.++.+++.+++.+.|++++ ++.++.+. .+..+
T Consensus 310 ~~rfE~GT~n~~~i~~l~aal~~l--~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~iv 387 (805)
T PLN02724 310 EQRFEDGTISFLSIAALRHGFKLL--NRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIV 387 (805)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEE
Confidence 11223467777777777777651 122467778888999999999998875 47776432 23334
Q ss_pred EeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC-----------------------------------C
Q 018665 274 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-----------------------------------D 318 (352)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-----------------------------------~ 318 (352)
.+.+.+..+. .....++ ..|+..+||.++.|..|.. .
T Consensus 388 sFnv~~~~~~-------~v~~~~v-~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~ 459 (805)
T PLN02724 388 TFNLKRADGS-------WVGHREV-EKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPT 459 (805)
T ss_pred EEEEEcCCCC-------EeCHHHH-HHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCccc
Confidence 4454432110 0023334 4566667999999987751 2
Q ss_pred CeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 319 TCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 319 ~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
+.+|+|++. +.+|++++++.|++..-.
T Consensus 460 G~vRvS~g~ynt~eDvd~lv~~l~~~~~~ 488 (805)
T PLN02724 460 GAVRVSFGYMSTFEDCQKFIDFIISSFVS 488 (805)
T ss_pred ceEEEEcCccCCHHHHHHHHHHHHHHhhc
Confidence 789999998 999999999999997744
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-22 Score=172.15 Aligned_cols=297 Identities=18% Similarity=0.170 Sum_probs=195.9
Q ss_pred ChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC-CCC----EEEecCCCCCChH---HHHHhcC
Q 018665 10 TLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS-PGD----EVIIPAPFWVSYP---EMARIAD 81 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-~~~----~vl~~~~~~~~~~---~~~~~~g 81 (352)
.++.| +.+|++++ .++.+|+||+|+|++++.+++.... .++ +|++.+..|.... ..++..|
T Consensus 87 ~E~aR------~~VAklIn-----Ad~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g 155 (428)
T KOG1549|consen 87 VEAAR------EQVAKLIN-----ADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEG 155 (428)
T ss_pred HHHHH------HHHHHHhC-----CCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcC
Confidence 67788 99999998 8888899999999999999998632 334 8888888887766 4666789
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
++|.++|++ .++.+|.+++++.++++++++.|...+|.+|+++| +++|.++|++. ++.+++|.+|+- |+.
T Consensus 156 ~~Vt~lpv~--~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~P---v~EI~~icr~~-~v~v~~DaAQav----G~i 225 (428)
T KOG1549|consen 156 LEVTYLPVE--DSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQP---VKEIVKICREE-GVQVHVDAAQAV----GKI 225 (428)
T ss_pred eEEEEeccC--ccccccHHHHHHhcCCCceEEEEEecccCcccccc---HHHHHHHhCcC-CcEEEeehhhhc----CCc
Confidence 999999998 44568999999999999999999999999999999 99999999999 999999999986 555
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChh--HHH---HH---HhhhhccccCCChHHHHHHHHHhcccCC
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVA---AC---NKIQSQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~--~~~---~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
+..+..+.. +++..|.||++|.+| +|+++++++ .+. .+ ......+..+...+.+..+-.+.+.
T Consensus 226 ~vDV~eln~----D~~s~s~HK~ygp~~--iGaLYvr~~~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~--- 296 (428)
T KOG1549|consen 226 PVDVQELNA----DFLSISAHKIYGPPG--IGALYVRRKRPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEF--- 296 (428)
T ss_pred cccHHHcCc----hheeeecccccCCCc--ceEEEEccCCCcccccCcccCCccccccccCCcCchhhhhhHHHHHH---
Confidence 555555544 388999999999777 898888751 111 00 1112233445555555555555543
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcc-cCCceecCCCCc---eEEEeecCCccCCcccCCCCCCChHHHHHHHHH---ccC
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGA---FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD---KAQ 306 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~g 306 (352)
...........+++....+...+.. .+.+....+... -.+-+.++-. ....+...+.+ +.|
T Consensus 297 ~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~------------~g~~~~~~~~~~~l~s~ 364 (428)
T KOG1549|consen 297 VNKEMAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYV------------EGESLLMDLKDVALSSG 364 (428)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhhhCchhhccCCcccccccceeeecccc------------cCcchhhhhhhhhhccc
Confidence 1122222222333344444444432 333333322111 1122233300 11111111110 111
Q ss_pred EEeccCC-------------CCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 307 VALVPGD-------------AFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 307 i~i~~g~-------------~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
....... .+-...++||+++. +++|++++.+.+++.+..++.
T Consensus 365 ~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~ 421 (428)
T KOG1549|consen 365 SACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLRE 421 (428)
T ss_pred chhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhccc
Confidence 1111110 00013589999998 889999999999999987765
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=176.25 Aligned_cols=226 Identities=18% Similarity=0.195 Sum_probs=160.6
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEE
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~ 85 (352)
|+.-..+++ +.+|++++ ..+.+++++|+++++..++.+++++||+|+++.++|.++...+...|.+++
T Consensus 57 ~~g~i~~~~------~~~A~~~g------a~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~ 124 (294)
T cd00615 57 PTGPIKEAQ------ELAARAFG------AKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPV 124 (294)
T ss_pred CChHHHHHH------HHHHHHhC------CCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEE
Confidence 344456777 99999986 345566699999999999999999999999999999999999999999999
Q ss_pred EecccCCCC----cccCHHHHHhhcc--CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc-ccC
Q 018665 86 ILPTRISEN----FLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI-IYA 158 (352)
Q Consensus 86 ~i~~~~~~~----~~~d~~~l~~~l~--~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~-~~~ 158 (352)
+++.+.+.+ ..+|+++++++++ ++++++++++| |++|.+.| +++|+++|+++ |+++|+||+|+.. .+.
T Consensus 125 ~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~-g~~livDeA~~~~~~~~ 199 (294)
T cd00615 125 YLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVEEAHHR-GLPVLVDEAHGAHFRFH 199 (294)
T ss_pred EecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecC---HHHHHHHHHhc-CCeEEEECcchhhhccC
Confidence 998764433 3689999999996 46889999988 68999999 99999999999 9999999998742 222
Q ss_pred CCCccccccCCCCCCceEEEeccccccccccceeEEE-EcChhH--HHHHHhh-hhccccCCChHHHHHHHHHhcccCCC
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI-AGPKHF--VAACNKI-QSQFTSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l-~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
+..+.+.. ..+.++++.|++|++ +|++.|++ ..+.+. .+++... ....+.+++.....++..++.. .
T Consensus 200 ~~~~~~~~----~~~~div~~S~hK~l--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~---~ 270 (294)
T cd00615 200 PILPSSAA----MAGADIVVQSTHKTL--PALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAM---M 270 (294)
T ss_pred cccCcchh----hcCCcEEEEchhccc--chHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH---H
Confidence 22111111 136679999999987 56655444 344331 2233222 2333456666666666666653 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFG 257 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~ 257 (352)
....++..++..++.+.+++.|+
T Consensus 271 ~~~g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 271 ALEGKELVEELIELALYARQEIN 293 (294)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHh
Confidence 22233445555556666666554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-21 Score=177.18 Aligned_cols=292 Identities=15% Similarity=0.139 Sum_probs=189.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHH-HHhcC-------------CeEEEecccCCCC--cc-
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEM-ARIAD-------------ATPVILPTRISEN--FL- 96 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~-~~~~g-------------~~v~~i~~~~~~~--~~- 96 (352)
.+.++++++|++|++.+++... ....+|+.....|++.... +...+ ..+..+|.+.... ..
T Consensus 103 ~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (433)
T PRK08117 103 LDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGE 182 (433)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccC
Confidence 4689999999999999998632 2335788777777765432 21111 1123333331100 00
Q ss_pred -------cCHHHHHhhcc-----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 97 -------LDPKVLESKLT-----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 97 -------~d~~~l~~~l~-----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
.+++.+++.++ +++.+|++.......|.. .+.+++++|.++|++| |+++|+||++.++..+|....
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tG~gr~G~~~~ 261 (433)
T PRK08117 183 DPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRH-GILLIFDEVQTGFGRTGEWFA 261 (433)
T ss_pred chhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhccCccccchh
Confidence 14555666543 356777777777777876 5688999999999999 999999999999877664221
Q ss_pred ccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
+ ... +....+.+++|.+| +|+++|++++++++++.+.......+++.|++.++++.++++... .+.+.+
T Consensus 262 ~-~~~----gv~pDi~t~sK~lg-~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~-----~~~l~~ 330 (433)
T PRK08117 262 A-QTF----GVVPDIMTIAKGIA-SGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIK-----EEKLLD 330 (433)
T ss_pred H-hhc----CCCCCEeehhhhcc-CCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH-----hccHHH
Confidence 1 111 22233679999999 899999999999998887654555567889999999999998521 123444
Q ss_pred HHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCe
Q 018665 244 AFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 320 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~ 320 (352)
+++++.+++.+.|+++ ..+.......|.++.+++.+... ... ......+.+.+.++ ||.+.+... ..++
T Consensus 331 ~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~-~~~----~~~~~~~~~~l~~~-Gv~~~~~g~--~~~~ 402 (433)
T PRK08117 331 NANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDG-EPD----GDAVEKILDKCLEK-GLLFYLCGN--AGNV 402 (433)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCC-Ccc----hHHHHHHHHHHHHC-CCEEeecCC--CCCE
Confidence 4555555555555443 12212223445666666643210 000 00245677777765 888866321 2579
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 321 IRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 321 iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
+|++++. ++++|++++++|.++++++.
T Consensus 403 lRl~p~~~~t~~~i~~~~~~l~~~l~~~~ 431 (433)
T PRK08117 403 LRMIPPLTVTKEEIDEGLDILDEALTEYE 431 (433)
T ss_pred EEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 9999754 99999999999999998764
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-21 Score=175.63 Aligned_cols=284 Identities=15% Similarity=0.091 Sum_probs=186.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--------CCCCEEEecCCCCCChHHHHHh-cC------------CeEEEecccCCCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--------SPGDEVIIPAPFWVSYPEMARI-AD------------ATPVILPTRISEN 94 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--------~~~~~vl~~~~~~~~~~~~~~~-~g------------~~v~~i~~~~~~~ 94 (352)
.+.++++++|++|++.+++... ....+|+.....|++....... .+ ..+..++.+..+.
T Consensus 102 ~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 181 (423)
T PRK05964 102 LDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGY 181 (423)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchh
Confidence 4689999999999999998642 1235788888888876543322 11 1223344432111
Q ss_pred cccCHHHHHhhcc---CCeeEEEEcC-CCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCC
Q 018665 95 FLLDPKVLESKLT---EKSRLLILCS-PSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 169 (352)
Q Consensus 95 ~~~d~~~l~~~l~---~~~~~i~i~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~ 169 (352)
...+++.+++.++ +++.+|++.. .++.+|... |.+++++|.++|++| |+++|+||++.++..+|... .....
T Consensus 182 ~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~G~~~-a~~~~- 258 (423)
T PRK05964 182 EQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRH-GVLLIFDEIATGFGRTGTLF-ACEQA- 258 (423)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCcchh-HHHhc-
Confidence 1123778888774 4666777766 477777665 788999999999999 99999999999886665321 11111
Q ss_pred CCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh------hhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 170 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 170 ~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
+...-+.+++|.++ +| +++|++++++++.+.+... ....+++.|++...++.++++.-. .+++.
T Consensus 259 ---~v~pDi~~~~K~l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~-~~~~~---- 329 (423)
T PRK05964 259 ---GVSPDIMCLSKGLT-GGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFE-DEPVL---- 329 (423)
T ss_pred ---CCCCCeeeeehhhh-cCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHH-hcCHH----
Confidence 11122557889997 55 8999999999998887532 123445689999999988887411 12333
Q ss_pred HHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 243 KAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
++.+++-+++.+.|+++ +.+.-+. ..|.++.+.+.+... . .....+.+.|.++ ||.+.+. .+
T Consensus 330 ~~~~~~g~~l~~~l~~l~~~~~i~~vr-g~Gl~~~i~l~~~~~----~----~~~~~l~~~l~~~-Gv~v~~~-----~~ 394 (423)
T PRK05964 330 ERVAALSAGLAEGLEPFRDLPGVADVR-VLGAIGAVELDRPVL----E----RDGPALRAFALER-GVLLRPL-----GN 394 (423)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEee-cccEEEEEEeccCcc----h----hHHHHHHHHHHHC-CeEEEec-----CC
Confidence 44444444555544433 3332222 345556666653210 0 0256788888865 9998763 35
Q ss_pred eEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 320 CIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 320 ~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+|++++. +++|+++++++|+++++++
T Consensus 395 ~lR~~p~l~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 395 TIYLMPPYIITAEELDRITDAIVEVADEL 423 (423)
T ss_pred EEEEeCCcccCHHHHHHHHHHHHHHHhhC
Confidence 89999885 9999999999999999763
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=172.27 Aligned_cols=209 Identities=13% Similarity=0.128 Sum_probs=152.8
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.+|++.+ .+..++++++++|+..++.+++++||+|+++.+.|.+... .++..|.+++.++..
T Consensus 70 ~~lA~l~g-------~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~------ 136 (427)
T PRK05994 70 ERVAALEG-------GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD------ 136 (427)
T ss_pred HHHHHHhC-------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC------
Confidence 88888874 4457889999999999999999999999999999986543 467789999998752
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
|++.+++++++++++|++++|+||+|.+.| +++|+++|+++ |+++|+|+++... ....++ ..+-++
T Consensus 137 -d~~~l~~ai~~~tklV~vesp~NptG~v~d---l~~I~~la~~~-gi~livD~a~a~~----~~~~pl-----~~gaDi 202 (427)
T PRK05994 137 -DPASFERAITPRTKAIFIESIANPGGTVTD---IAAIAEVAHRA-GLPLIVDNTLASP----YLIRPI-----EHGADI 202 (427)
T ss_pred -CHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCcccc----ccCCcc-----ccCCcE
Confidence 789999999989999999999999999999 89999999999 9999999998641 111121 134559
Q ss_pred EEeccccccccccceeEEEEcC-hh-----------------------HHHHHH----------hhhhccccCCChHHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGP-KH-----------------------FVAACN----------KIQSQFTSGASSISQK 222 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~-~~-----------------------~~~~~~----------~~~~~~~~~~~~~~~~ 222 (352)
++.|++|.+|.+|-.+|.+++. .. +.+.+. ......+...+++...
T Consensus 203 vv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~ 282 (427)
T PRK05994 203 VVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAF 282 (427)
T ss_pred EEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHH
Confidence 9999999997555455654432 11 111110 0112223345555554
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCce
Q 018665 223 AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
.+...+ +.+..+.++..++...+.+.|++.|++.
T Consensus 283 l~~~~l-------~tL~~r~~~~~~~a~~la~~L~~~p~v~ 316 (427)
T PRK05994 283 LILTGI-------ETLPLRMQRHSDNALAVAEWLKGHPKVS 316 (427)
T ss_pred HHHcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 444444 3456666677778888888888877654
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=172.16 Aligned_cols=210 Identities=10% Similarity=0.089 Sum_probs=154.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.+|++.+ .+..+++++|++|+..++.+++++||+|+++...|.+.... ++..|++++.++ + .
T Consensus 76 ~~lA~l~g-------~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d--~--- 142 (436)
T PRK07812 76 QRIAALEG-------GVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-D--P--- 142 (436)
T ss_pred HHHHHHhC-------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-C--C---
Confidence 88888874 45678888999999999999999999999999988876643 455788888885 2 1
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
.|++++++++++++++|++++|+||+|.+.| +++|.++|+++ |+++|+|++++. +....++ .++-++
T Consensus 143 ~d~e~l~~ai~~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~-gi~liVD~t~a~----~~~~~pl-----~~GaDi 209 (436)
T PRK07812 143 DDLDAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEVAHEA-GVPLIVDNTIAT----PYLIRPL-----EHGADI 209 (436)
T ss_pred CCHHHHHHhCCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcc----cccCCch-----hcCCCE
Confidence 2899999999999999999999999999999 99999999999 999999999764 1111121 134558
Q ss_pred EEeccccccccccceeEEEEcChhH-------------------------------HHHHH-hhhhccccCCChHHHHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHF-------------------------------VAACN-KIQSQFTSGASSISQKAG 224 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~-------------------------------~~~~~-~~~~~~~~~~~~~~~~~~ 224 (352)
++.|++|.+|..|--+|.+++.... +.+.. ......+...+++....+
T Consensus 210 vv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~ 289 (436)
T PRK07812 210 VVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLI 289 (436)
T ss_pred EEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 8999999997566556666553210 10111 122233455666655544
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCce
Q 018665 225 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
...++ .+..+.++..++...+.+.|++.|++.
T Consensus 290 ~rgl~-------tL~~R~~~~~~nA~~la~~L~~~p~v~ 321 (436)
T PRK07812 290 AQGLE-------TLSLRIERHVANAQRVAEFLEARDEVA 321 (436)
T ss_pred hcCcC-------cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 44443 466667777888888999999887753
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=175.55 Aligned_cols=282 Identities=11% Similarity=0.030 Sum_probs=195.0
Q ss_pred HHHHHHHHhcCCCCC-CCcEEEeC-ChHHHHHHHHHHhcCC-CCEEEecCCCCCCh-HH-HHHhcCC-eEEEecccCCCC
Q 018665 21 QQFVINLKENGLSYT-PDQILVSN-GAKQSILQAVLAVCSP-GDEVIIPAPFWVSY-PE-MARIADA-TPVILPTRISEN 94 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~-~~~i~~~~-g~~~a~~~~~~~l~~~-~~~vl~~~~~~~~~-~~-~~~~~g~-~v~~i~~~~~~~ 94 (352)
+.++++++ .+ +++|++++ |+|++++.++.+++++ ++.|+. ...|..- .. ..+..|. +++.++.+ .+
T Consensus 55 ~~l~~l~~-----~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~--~g 126 (378)
T PRK03080 55 EGTRELLS-----LPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEAD--YG 126 (378)
T ss_pred HHHHHHhC-----CCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHHHHHHHHhhcCCCCceEeccC--CC
Confidence 77777775 43 35788875 9999999999998874 344444 4444432 22 2366799 99999876 33
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
..+|+++++. ++.|.+++..|.||..+| +++|++ +++ |+++++|.+++. |..+..+.. -
T Consensus 127 ~~~d~~~i~~-----~~~V~~~h~~t~tG~~~p---i~~I~~--~~~-g~~~vVDa~qs~----G~~pidv~~------i 185 (378)
T PRK03080 127 SLPDLSAVDF-----DRDVVFTWNGTTTGVRVP---VARWIG--ADR-EGLTICDATSAA----FALPLDWSK------L 185 (378)
T ss_pred CCCCHhhcCC-----CCCEEEEecCCccceecc---chhhcc--ccC-CCeEEEeccccc----ccCCCCHHH------C
Confidence 3467776432 456888999999999999 888888 788 999999999886 333333332 2
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhhh--------------------h--c-cccCCChHHHHHHHHHhccc
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ--------------------S--Q-FTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~--------------------~--~-~~~~~~~~~~~~~~~~l~~~ 231 (352)
+++++|.+|+++ +..++|+++.+++.++++.... . . +..+++.....++.++++.-
T Consensus 186 D~~~~s~~K~l~-~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l 264 (378)
T PRK03080 186 DVYTFSWQKVLG-GEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWA 264 (378)
T ss_pred cEEEEehhhhCC-CCCceEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHH
Confidence 489999999996 4356899999999887765321 0 0 01224444454445566541
Q ss_pred CCChH-HHHHHHHHHHHHHHHHHHHhcccCCceecCC----CCceEEEeecCC---ccCCcccCCCCCCChHHHHHHHHH
Q 018665 232 YAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFST---YYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 232 ~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~----~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
... .++++.++.+++.+++++.|++++++.++.+ +++..+.+.+++ . ...++...|.+
T Consensus 265 --~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~------------~~~~~~~~l~~ 330 (378)
T PRK03080 265 --NSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAA------------VDAAAVAKLLR 330 (378)
T ss_pred --HHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHH------------HHHHHHHHHHH
Confidence 123 5788888999999999999998866666531 233345566664 1 23356667776
Q ss_pred ccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 304 KAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 304 ~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
+ |+.+..|......+.+|+|++. +++|++++++.|++++++++
T Consensus 331 ~-~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~ 375 (378)
T PRK03080 331 E-NGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERLK 375 (378)
T ss_pred c-CCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 6 7888776533235789999987 88999999999999988765
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=172.06 Aligned_cols=286 Identities=11% Similarity=0.099 Sum_probs=187.9
Q ss_pred cEEE-eCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHH-HHHhcC------------CeEEEecccCCCCc-ccCHH
Q 018665 38 QILV-SNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRISENF-LLDPK 100 (352)
Q Consensus 38 ~i~~-~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~-~~~~~g------------~~v~~i~~~~~~~~-~~d~~ 100 (352)
.+++ ++||++|++.+++... ....+|+.....|++... .+...+ ..+..+|.+..... .-|++
T Consensus 104 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 183 (425)
T PRK09264 104 KVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLA 183 (425)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHH
Confidence 5655 5899999999998753 234678888888887653 222211 12344444321100 12677
Q ss_pred HHHhhcc------CCeeEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 101 VLESKLT------EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 101 ~l~~~l~------~~~~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
.+++.+. +++.+|++...+...|. ++|.+.+++|.++|++| |+++|+||++.+++..|.. .........++
T Consensus 184 ~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GrtG~~-~~~~~~~v~PD 261 (425)
T PRK09264 184 YLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKH-DILLIVDDIQAGCGRTGTF-FSFERAGITPD 261 (425)
T ss_pred HHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEechhhCCccccHH-HHHhhcCCCCC
Confidence 7887774 24667777777777786 56888999999999999 9999999999988766632 11121211122
Q ss_pred ceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
+.+++|.+|.+|+++|++++++++ ..+.......+++.|+++..++.++++.... + .++.++++++.+++.
T Consensus 262 ----i~t~~K~l~~~G~pigav~~~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~-~---~~l~~~~~~~g~~l~ 332 (425)
T PRK09264 262 ----IVTLSKSISGYGLPMALVLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWS-D---DAFEKEVKAKGELVR 332 (425)
T ss_pred ----EEEeccccCCCccceEEEEEchhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHh-h---hHHHHHHHHHHHHHH
Confidence 457789998449999999999886 4443333445677888888877777742111 1 134445555555555
Q ss_pred HHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--
Q 018665 254 KSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-- 327 (352)
Q Consensus 254 ~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-- 327 (352)
+.|++ .|.+.......|.++++.+++.. ....+.+.+.++ |+.+.+...+ ...+|++++.
T Consensus 333 ~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~-----------~~~~l~~~~~~~-Gv~~~~~~~~--~~~lr~~p~l~~ 398 (425)
T PRK09264 333 ERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGE-----------LAGKIAAEAFEN-GLIIETSGPE--DEVVKLLPPLTI 398 (425)
T ss_pred HHHHHHHHhCCCceecceecccEEEEEecChH-----------HHHHHHHHHHHC-CCEEeccCCC--CCEEEEeCCCCC
Confidence 55543 33232222345777888886431 466788888876 8998775322 4788998874
Q ss_pred CHHHHHHHHHHHHHHHhhhCC
Q 018665 328 SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 328 ~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+++++++++++|+++++++..
T Consensus 399 t~~ei~~~~~~l~~~l~~~~~ 419 (425)
T PRK09264 399 DEEELEEGLDILEEAVAEVLA 419 (425)
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999987644
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=170.11 Aligned_cols=288 Identities=15% Similarity=0.071 Sum_probs=193.6
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCC-------------------------------CCEEEecCCCCCChHHH-----H
Q 018665 34 YTPDQILVSNGAKQSILQAVLAVCSP-------------------------------GDEVIIPAPFWVSYPEM-----A 77 (352)
Q Consensus 34 ~~~~~i~~~~g~~~a~~~~~~~l~~~-------------------------------~~~vl~~~~~~~~~~~~-----~ 77 (352)
.+..+|-..+| +.|+..++.+++++ ||+|+..+..+.++... +
T Consensus 110 a~~anvqp~Sg-~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~ 188 (493)
T PRK13580 110 AEHAYVQPHSG-ADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNI 188 (493)
T ss_pred CCcccccCCCc-HHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccch
Confidence 44456665555 46777788888865 79999877666544321 2
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 157 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~ 157 (352)
.....++..++++. .+..+|++++++.+++.++.++++..+|- |...| +++|.++|+++ |+++++|++|+....
T Consensus 189 ~~~~~~~~~y~vd~-~~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~d---l~~i~eia~~~-gA~L~VD~AH~~Gli 262 (493)
T PRK13580 189 SGKMFHQRSYGVDP-DTGLLDYDEIAALAREFKPLILVAGYSAY-PRRVN---FAKLREIADEV-GAVLMVDMAHFAGLV 262 (493)
T ss_pred hhheeeeEecccCc-ccCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcC---HHHHHHHHHHc-CCEEEEECchhhcee
Confidence 22235666777764 33469999999999988888888888776 44778 99999999999 999999999996544
Q ss_pred CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHH
Q 018665 158 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
.+......... ..+.+++++|++|++ .|.+.|++++++++++.+.........++.++..++.+.++... ....
T Consensus 263 gg~~~~~~~~~--~~~~D~vtgT~hKaL--~GP~GG~I~~~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~--~~~e 336 (493)
T PRK13580 263 AGKVFTGDEDP--VPHADIVTTTTHKTL--RGPRGGLVLAKKEYADAVDKGCPLVLGGPLPHVMAAKAVALAEA--RTPE 336 (493)
T ss_pred ccccchhhcCC--CCCCcEEEeCChhhc--cCCCeEEEEecHHHHHHHhhCCCcccCCCccHHHHHHHHHHHHH--hCcc
Confidence 33221100000 123458999999998 23446999999999888854432222234444444444444431 1122
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCceecC-CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 238 VSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
..+.++++.++.++|.+.|++. |+.++. ...+.++++.+++.. .+...+.+.|.+. ||.+.+-....
T Consensus 337 f~~y~~~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~~----------~~g~~a~~~L~e~-GI~vn~i~~Pt 404 (493)
T PRK13580 337 FQKYAQQVVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSFG----------LTGRQAESALLDA-GIVTNRNSIPS 404 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCHH----------HHHHHHHHHHHHC-CeEEccccCCC
Confidence 3567888999999999999987 888763 244566777876531 0233565666655 99987654333
Q ss_pred C------CCeEEEEeec------CHHHHHHHHHHHHHHHhhh
Q 018665 317 D------DTCIRISYAA------SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 317 ~------~~~iRi~~~~------~~~~l~~~~~~l~~~~~~~ 346 (352)
. +..+||++.. +++|++++++.|.++++..
T Consensus 405 vp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 405 DPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred CCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 2 4579999876 5799999999999988754
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=174.32 Aligned_cols=291 Identities=11% Similarity=0.052 Sum_probs=196.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEe---CChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh----------cCCeEEEe
Q 018665 21 QQFVINLKENGLSYTPDQILVS---NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----------ADATPVIL 87 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~---~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~----------~g~~v~~i 87 (352)
+.++++++ .+++++.++ +|+++++..++.+++++||+|++....|.++...+.. .+.++..+
T Consensus 87 ~~~a~lf~-----a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~ 161 (452)
T PTZ00094 87 KRALEAFG-----LDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPY 161 (452)
T ss_pred HHHHHHhC-----CCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeec
Confidence 57777776 566777677 7899999999999999999999988888776544321 12334455
Q ss_pred cccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccc
Q 018665 88 PTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 88 ~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
+++. ++.+|+++|++.+++ +++++++. ++.+|...| +++|.++|+++ |+++++|++|+...... ...
T Consensus 162 ~~~~--~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~d---i~~I~~i~~~~-ga~l~vDaaq~~G~i~~----~~~ 229 (452)
T PTZ00094 162 QVNE--KGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDID---YKRFREICDSV-GAYLMADIAHTSGLVAA----GVL 229 (452)
T ss_pred ccCC--CCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccC---HHHHHHHHHHc-CCEEEEeccchhccccC----CCC
Confidence 5543 356999999999954 56666653 345899999 89999999999 99999999998633222 111
Q ss_pred cCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh-----hccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
..+. .+.+++++|.+|+++ |.+.|+++.++++.+.+.... ..+..+++....+++.++++.. .....++.
T Consensus 230 ~~~~-~~~D~l~~S~hK~l~--GP~Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~--~~~~~~~~ 304 (452)
T PTZ00094 230 PSPF-PYADVVTTTTHKSLR--GPRSGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEV--QSPEWKEY 304 (452)
T ss_pred CCCC-CCCcEEEcCCccCCC--CCCceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHH--hChhHHHH
Confidence 1111 134589999999883 233488777766544332211 1122356777777777777651 12345677
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCC-ceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec-cCCCCC---
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQG-AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAFG--- 316 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~-~g~~~~--- 316 (352)
.+++.++.+++.+.|++. |+.+..+.. .....+.+.... .+...+...|. +.||.+. ++-.+.
T Consensus 305 ~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~----------~~~~~~~~~L~-~~gI~vs~~~~p~~~~~ 372 (452)
T PTZ00094 305 AKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPFG----------ITGSKMEKLLD-AVNISVNKNTIPGDKSA 372 (452)
T ss_pred HHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcCC----------CCHHHHHHHHH-HCCcEEecccCCCCCcC
Confidence 788999999999999876 877764321 222333443210 15677777775 4599984 332221
Q ss_pred -CCCeEEEEeec--C----HHHHHHHHHHHHHHHhh
Q 018665 317 -DDTCIRISYAA--S----LTTLQAAVERIKKGLLT 345 (352)
Q Consensus 317 -~~~~iRi~~~~--~----~~~l~~~~~~l~~~~~~ 345 (352)
.++++|++++. + ++|++++++.|++++..
T Consensus 373 ~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 373 LNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred CCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 24789999976 3 89999999999999875
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=171.33 Aligned_cols=290 Identities=14% Similarity=0.042 Sum_probs=185.2
Q ss_pred HHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCCh-HHHHHh--cCCeE--EEecccCCCCcc
Q 018665 22 QFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY-PEMARI--ADATP--VILPTRISENFL 96 (352)
Q Consensus 22 ~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~-~~~~~~--~g~~v--~~i~~~~~~~~~ 96 (352)
.++++++ ....++.++||+.|+..++.+++++||+|+++..+|.+. ...++. .+... ..++.+. .++.
T Consensus 82 ~la~l~g------~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~ 154 (416)
T PRK13034 82 RAKQLFG------CDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDR-LTGL 154 (416)
T ss_pred HHHHHhC------CCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEccccc-ccCC
Confidence 8888885 333335568999999999999999999999999999773 222221 12222 2444432 2345
Q ss_pred cCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 97 LDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 97 ~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
+|++++++.++ .++++|++..+. .|...| +.+|.++|+++ |+++++|++|+...+.. . .....+ ...+
T Consensus 155 ~d~~~le~~l~~~~~klVi~~~~~--~g~~~d---l~~l~~la~~~-g~~livD~Aha~G~~~~-g-~~~~~~---~~~D 223 (416)
T PRK13034 155 IDYDEVEELAKEHKPKLIIAGFSA--YPRELD---FARFREIADEV-GALLMVDMAHIAGLVAA-G-EHPNPF---PHAH 223 (416)
T ss_pred cCHHHHHHHHhhcCCeEEEECCCc--cccccC---HHHHHHHHHHc-CCEEEEeCcccccCccc-C-CCCCCC---CCce
Confidence 89999999885 367787775554 467778 88999999999 99999999998643321 1 111111 1345
Q ss_pred EEEeccccccccccceeEEEEcChhHH-HHHHhhhhccc--cCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKHFV-AACNKIQSQFT--SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
++++|++|+++ |...|+++++.+.+ ..++.. .+.+ .++++....++..++... ......+.++++.++.+++
T Consensus 224 i~~~s~~K~l~--g~~GG~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~l~~~a~~l 298 (416)
T PRK13034 224 VVTTTTHKTLR--GPRGGMILTNDEEIAKKINSA-VFPGLQGGPLMHVIAAKAVAFGEA--LQPEFKTYAKQVIANAQAL 298 (416)
T ss_pred EEEEeCcccCC--CCCCeEEEECcHHHHHHHHhh-cCCcccCCccHHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHH
Confidence 89999999994 22247777765544 434332 2111 123333333333333321 1122345578889999999
Q ss_pred HHHhcccCCceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC------CCCCCeEEEEe
Q 018665 253 VKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA------FGDDTCIRISY 325 (352)
Q Consensus 253 ~~~l~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~------~~~~~~iRi~~ 325 (352)
++.|++. |+.+..+ .....+.+.+.... .+...+.+.|.++ ||.+.+... ...+..+|+++
T Consensus 299 ~~~L~~~-G~~~~~~~~~t~i~~v~~~~~~----------~~~~~~~~~L~~~-GI~v~~~~~p~~~~~p~~~~~lR~~~ 366 (416)
T PRK13034 299 AEVLKER-GYDLVSGGTDNHLLLVDLRPKG----------LSGKDAEQALERA-GITVNKNTVPGDTESPFVTSGIRIGT 366 (416)
T ss_pred HHHHHHc-CCEeccCCCCCcEEEEEcCCCC----------CCHHHHHHHHHhC-CcEEeccCCCCCCcCCCCCCeeEeCc
Confidence 9999988 8887643 34455556554321 1456666777654 998865211 11245799997
Q ss_pred ec------CHHHHHHHHHHHHHHHhhh
Q 018665 326 AA------SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 326 ~~------~~~~l~~~~~~l~~~~~~~ 346 (352)
+. +++|++++++.|++++.+.
T Consensus 367 ~~~t~~~~~~~di~~l~~~l~~~~~~~ 393 (416)
T PRK13034 367 PAGTTRGFGEAEFREIANWILDVLDDL 393 (416)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhcC
Confidence 65 5799999999999988753
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-20 Score=162.89 Aligned_cols=286 Identities=20% Similarity=0.285 Sum_probs=198.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCc
Q 018665 17 WSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 95 (352)
Q Consensus 17 ~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~ 95 (352)
.+|++.+|+|++ ..+.+.++|+|.|+..+++++ .++||.|++|..+|..+.+..-..|.+++++++++ +.+
T Consensus 37 ~~FE~~~ae~~G-------~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~-~T~ 108 (374)
T COG0399 37 RRFEQAFAEYLG-------VKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDP-DTL 108 (374)
T ss_pred HHHHHHHHHHhC-------CCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCC-ccc
Confidence 356799999984 788899999999999999976 58999999999999999999999999999999996 557
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc-ccCCCCccccccCCCCCCc
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI-IYAPATHTSFASLPGMWER 174 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~-~~~~~~~~~~~~~~~~~~~ 174 (352)
.+|++.+++++++++++|+..+ -.|...+ +++|.++|++| |++||+|.+++.. .|.|+...++.
T Consensus 109 nid~~~ie~aIt~~tKAIipVh---l~G~~~d---m~~i~~la~~~-~l~vIEDaAqa~Ga~y~gk~vGt~G-------- 173 (374)
T COG0399 109 NIDPDLIEAAITPRTKAIIPVH---LAGQPCD---MDAIMALAKRH-GLPVIEDAAQAHGATYKGKKVGSFG-------- 173 (374)
T ss_pred CCCHHHHHHHcccCCeEEEEeh---hccCCCC---HHHHHHHHHHc-CCeEEEEcchhccCeecCccccccc--------
Confidence 7999999999999999999544 4577888 99999999999 9999999999853 33443222222
Q ss_pred eEEEecc--ccccccccceeEEEEc-ChhHHHHHHhhhhcc----------------ccCCChHHHHHHHHHhcccCCCh
Q 018665 175 TLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF----------------TSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 175 ~i~~~s~--sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
.+.+.|| .|.++ .| -.|.+++ ++++.++++...... ++..+.+..+..... -
T Consensus 174 d~~~fSF~~~K~it-tg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~Q-------L 244 (374)
T COG0399 174 DIGAFSFHATKNLT-TG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQ-------L 244 (374)
T ss_pred ceEEEEecCCCCcc-cc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHH-------H
Confidence 2556776 69887 55 4577665 456777665432111 111222222222222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCc----eE-EEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE--
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA----FY-LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA-- 308 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~-- 308 (352)
+.+++..++-++..+...+.|++++++.......+ ++ ..+.+++.. .+-+.+.+.|.++ ||.
T Consensus 245 ~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~----------~~R~~l~~~L~~~-gi~~~ 313 (374)
T COG0399 245 ERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEEG----------ISRDALMESLKEA-GVGAV 313 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCCC----------CCHHHHHHHHHhC-CCCce
Confidence 45566666666677788888888766544422222 22 233444320 1567888888866 544
Q ss_pred --eccCCCC--------C----C-------CCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 309 --LVPGDAF--------G----D-------DTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 309 --i~~g~~~--------~----~-------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
..|-... . . ...+.+.+.. +++++++.++.|++++..
T Consensus 314 ~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 314 VYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred EEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 3331110 0 0 1357776665 899999999999998864
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=171.01 Aligned_cols=277 Identities=12% Similarity=0.077 Sum_probs=183.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcC-----CCCEEEecCCCCCChHH-HHHhcCC------------eEEEecccCCCCcccC
Q 018665 37 DQILVSNGAKQSILQAVLAVCS-----PGDEVIIPAPFWVSYPE-MARIADA------------TPVILPTRISENFLLD 98 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~~-----~~~~vl~~~~~~~~~~~-~~~~~g~------------~v~~i~~~~~~~~~~d 98 (352)
+.++++++|++|++.+++.... ...+|+.....|++... .+...+. .+..+|. .|
T Consensus 135 ~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-------~d 207 (442)
T TIGR03372 135 KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-------GD 207 (442)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-------CC
Confidence 6799999999999999986421 23578888887777653 3322221 1122221 25
Q ss_pred HHHHHhhcc------CCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 99 PKVLESKLT------EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 99 ~~~l~~~l~------~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
.+.+++.++ +++.++++...+...|... |++.++++.++|++| |+++|+||++.+++.+|.. ..+....-.
T Consensus 208 ~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~-g~llI~DEV~tG~GRtG~~-~a~e~~gv~ 285 (442)
T TIGR03372 208 IEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEF-GALLILDEVQTGMGRTGKM-FACEHEGVQ 285 (442)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeecccCCCccccc-hhhhhcCCC
Confidence 666666553 3567777777777778655 678899999999999 9999999999988766642 222222211
Q ss_pred CCceEEEecccccccccc-ceeEEEEcChhHHHHHHh--hhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Q 018665 172 WERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 248 (352)
+| +.+++|.+| +| +++|.+++++++.+.+.. .....+++.|+...+++.+.|+.-.. ++..++..+.-...
T Consensus 286 PD----ivt~gK~lg-~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~-~~l~~~~~~~G~~l 359 (442)
T TIGR03372 286 PD----ILCLAKALG-GGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLE-KNLPAQAAIKGDFL 359 (442)
T ss_pred CC----eeeehhhhc-CCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 22 445899998 88 699999999998887742 23455677899999999999876211 12233333333333
Q ss_pred HHHHHHHhcccC-CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec
Q 018665 249 RDFLVKSFGELE-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 327 (352)
Q Consensus 249 ~~~l~~~l~~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~ 327 (352)
++.|.+...+.| .+.-+. ..|.++.+++.+.. ....+.+.|+++ |+.+.+... ..+.+|+.++.
T Consensus 360 ~~~L~~l~~~~~~~i~~vR-G~Gl~~giel~~~~-----------~~~~i~~~l~~~-Gvl~~~~~~--~~~~lr~~Ppl 424 (442)
T TIGR03372 360 LDGFQQLAAEYPDLIIEAR-GKGLLMAIEFRDNE-----------IGYAFAKELFQQ-NILVAGTLN--NAKSIRIEPPL 424 (442)
T ss_pred HHHHHHHHHhCCCceEEEe-cceEEEEEEeCChH-----------HHHHHHHHHHHC-CcEEeecCC--CCCEEEEECCc
Confidence 333433333343 222222 44666777775420 356788888876 899865321 24789998887
Q ss_pred --CHHHHHHHHHHHHHHH
Q 018665 328 --SLTTLQAAVERIKKGL 343 (352)
Q Consensus 328 --~~~~l~~~~~~l~~~~ 343 (352)
+++|+++++++|.+++
T Consensus 425 ~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 425 TITIEQCALVIKAAKDAL 442 (442)
T ss_pred ccCHHHHHHHHHHHHHhC
Confidence 9999999999998864
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-20 Score=167.61 Aligned_cols=293 Identities=13% Similarity=0.133 Sum_probs=194.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC-------CCCEEEecCCCCCChH-HHHHhcCCeE---EEecc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS-------PGDEVIIPAPFWVSYP-EMARIADATP---VILPT 89 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~~~~vl~~~~~~~~~~-~~~~~~g~~v---~~i~~ 89 (352)
..+++++.... ..+.+++++|+++|++.+++.+.. ...+|+..+..|++.. ..+...+... .+.|.
T Consensus 81 ~~la~~l~~~~---~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~ 157 (395)
T PRK03715 81 AKLAGLLTQHS---CFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQ 157 (395)
T ss_pred HHHHHHHhhcc---CCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCC
Confidence 77777776211 246899999999999999988641 1256887777776654 4444433221 11111
Q ss_pred cCC--CCcccCHHHHHhhccCCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccc
Q 018665 90 RIS--ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 90 ~~~--~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
... .....|++.+++.+++++++|+++..++..|... |.+.+++|.++|+++ |+++|+||++.+++..|.... ..
T Consensus 158 ~~~~~~~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~-~~llI~DEv~tG~GRtG~~~a-~~ 235 (395)
T PRK03715 158 VPGFPKAELNDIASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQH-GLLLIVDEVQTGCGRTGTLFA-YE 235 (395)
T ss_pred CCCceeeCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCcchhh-Hh
Confidence 100 0001478999999987888888887788888765 688999999999999 999999999998766664221 11
Q ss_pred cCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 246 (352)
..... .-+.+++|.+| +|.++|.+++++++.. +.......+++.++...+++.++++.- + -+++.++.+
T Consensus 236 ~~gv~----PDi~t~gK~lg-~G~p~~av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l----~-~~~l~~~~~ 304 (395)
T PRK03715 236 LSGIE----PDIMTLGKGIG-GGVPLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQL----L-APGFLEGVR 304 (395)
T ss_pred hcCCC----Cceeeehhhhh-CCcceEEEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHH----H-hccHHHHHH
Confidence 11111 12567899998 7899999999888753 322223456678899998888888752 1 134455666
Q ss_pred HHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc--cCEEeccCCCCCCCCeE
Q 018665 247 ERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK--AQVALVPGDAFGDDTCI 321 (352)
Q Consensus 247 ~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~gi~i~~g~~~~~~~~i 321 (352)
++-+++.+.|+++ .++..+. ..|.++.+++.+. ....+.+.+.+. .|+.+.+. .++.+
T Consensus 305 ~~g~~l~~~L~~l~~~~~i~~vr-G~Glm~~i~l~~~------------~~~~~~~~~~~~~~~Gi~~~~~----~~~~l 367 (395)
T PRK03715 305 ARGEYLKEKLLELSEERGLEGER-GEGLLRALLLGKD------------IGPQIVEKARDMQPDGLLLNAP----RPNLL 367 (395)
T ss_pred HHHHHHHHHHHHHhhcCCcCeEE-cceeEEEEEecCc------------hHHHHHHHHHhccCCCEEEeec----CCCEE
Confidence 6666666666543 1343332 3466677777532 233444433321 28888643 24789
Q ss_pred EEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 322 RISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 322 Ri~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
|++++. +++|+++++++|+++++++
T Consensus 368 R~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 368 RFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred EEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 999987 9999999999999999764
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-20 Score=165.12 Aligned_cols=282 Identities=13% Similarity=0.119 Sum_probs=203.6
Q ss_pred HHHHHHHHhcCCCCCCCcE--EEeCChHHHHHHHHHHh--cCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQI--LVSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i--~~~~g~~~a~~~~~~~l--~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.+|++++ .+++++ ++|+|+|+++..++... ..++++|+++...|.+...+++..|.+...++.++ ++.
T Consensus 72 ~~~a~l~g-----~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~--~g~ 144 (380)
T PRK02769 72 NFFAELFK-----IPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLP--NGE 144 (380)
T ss_pred HHHHHHhC-----CCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccCC--CCc
Confidence 55566665 444454 88999999988776554 24568999999999999999999999998888863 556
Q ss_pred cCHHHHHhhccCC---eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC---EEEEecccccccccCCCCccccccCCC
Q 018665 97 LDPKVLESKLTEK---SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR---LLVLSDEIYEHIIYAPATHTSFASLPG 170 (352)
Q Consensus 97 ~d~~~l~~~l~~~---~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~---~~livD~~~~~~~~~~~~~~~~~~~~~ 170 (352)
+|+++|+++++++ +.+|+++.++|++|.+.| +++|+++|+++ | +++++|.+++++...-...... +..
T Consensus 145 id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~-g~~~~~lHVDaA~gg~~~p~~~~~~~--~d~ 218 (380)
T PRK02769 145 IDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN---IKEIQEILKKI-GIDDYYIHADAALSGMILPFVNNPPP--FSF 218 (380)
T ss_pred CcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHh-CCCceEEEEEecccceeecccCcccc--CCc
Confidence 9999999999765 889999999999999999 99999999999 8 7999999998743210000000 111
Q ss_pred CCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhh-------ccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 171 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS-------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 171 ~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
..+-+.+..|.+|.++ ...++|+++.+++.++.+..... ...++.+.....++.+++.. ...+.+++..+
T Consensus 219 ~~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~--lg~~G~~~~~~ 295 (380)
T PRK02769 219 ADGIDSIAISGHKFIG-SPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRS--LGSKGLRQRVQ 295 (380)
T ss_pred cCCCCEEEECCcccCC-CCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHH--HCHHHHHHHHH
Confidence 1134578899999987 45678999988877666532111 11234455555556666554 24677899999
Q ss_pred HHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEE
Q 018665 244 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 323 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi 323 (352)
+..++.+++.+.|++. |+..........+.+..|. +++ .+ |..+.+- +.++|+
T Consensus 296 ~~~~la~~l~~~L~~~-g~~~~~~p~~~~v~f~~~~---------------~~~----~~--~w~l~~~-----~~~~hi 348 (380)
T PRK02769 296 HCLDMAQYAVDRLQAN-GIPAWRNPNSITVVFPCPS---------------ERI----WK--KWHLATS-----GNQAHI 348 (380)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEcCCCceEEEEcCCC---------------HHH----Hh--CeeEccc-----CCEEEE
Confidence 9999999999999886 8887765555556555432 122 22 4555442 458999
Q ss_pred Eeec--CHHHHHHHHHHHHHHHhh
Q 018665 324 SYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 324 ~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
.+.. +.+.++++++.|.+....
T Consensus 349 ~~~~~~~~~~~~~f~~dl~~~~~~ 372 (380)
T PRK02769 349 ITMPHHNKQQIDSLIDELIFDLKN 372 (380)
T ss_pred EECCCCCHHHHHHHHHHHHHHHhc
Confidence 8876 888999999999888763
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-20 Score=181.14 Aligned_cols=300 Identities=16% Similarity=0.129 Sum_probs=215.5
Q ss_pred hhhHHHHHHHHhcCCCCCCCcEEEeCChH----HHHHHHHHHhcCC-CC----EEEecCCCCCChHHHHHhcCCeEEEec
Q 018665 18 SFVQQFVINLKENGLSYTPDQILVSNGAK----QSILQAVLAVCSP-GD----EVIIPAPFWVSYPEMARIADATPVILP 88 (352)
Q Consensus 18 ~~~~~ia~~~~~~~~~~~~~~i~~~~g~~----~a~~~~~~~l~~~-~~----~vl~~~~~~~~~~~~~~~~g~~v~~i~ 88 (352)
+.++.++++++ .++|.++++++ ++++.+++.+.++ || .|+++...|......++..|++++.++
T Consensus 572 ~~r~~la~i~g-------~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~ 644 (993)
T PLN02414 572 DLGDLLCEITG-------FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVG 644 (993)
T ss_pred HHHHHHHHHhC-------CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEEec
Confidence 33488888875 49999999999 8999999998755 76 899999999999999999999999999
Q ss_pred ccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 89 TRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 89 ~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
.+. ++.+|+++|++++++ ++++|++++|+|-+|...| +++|+++|+++ |+++++|.++.... .+ ...
T Consensus 645 ~d~--~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~-Galv~vDgAq~~a~-~~--l~~- 714 (993)
T PLN02414 645 TDA--KGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDN-GGQVYMDGANMNAQ-VG--LTS- 714 (993)
T ss_pred cCC--CCCcCHHHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHc-CCEEEEEecCHHhc-cC--cCC-
Confidence 973 346999999999984 7899999999999999999 99999999999 99999999986411 00 111
Q ss_pred ccCCCCCCceEEEeccccccc----cccceeEEEEcChhHHHHHHhhh-----------hcc-ccCCC--h----HHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNKIQ-----------SQF-TSGAS--S----ISQKA 223 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g----~~g~~~g~l~~~~~~~~~~~~~~-----------~~~-~~~~~--~----~~~~~ 223 (352)
+.+.+-+++.+|.+|+|+ .+|.++|++.+.+++...+.... ... ..+.+ + .....
T Consensus 715 ---p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~ 791 (993)
T PLN02414 715 ---PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPI 791 (993)
T ss_pred ---ccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHH
Confidence 122455699999999775 34567999999887766654321 001 11111 1 22222
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE--EEeecCCccCCcccCCCCCCChHHHHHHH
Q 018665 224 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYL 301 (352)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 301 (352)
+...+.. ++.+.+.+..+....+..++.++|++..++.+..+.+.++ +.+.++... +..| .++.+++++|
T Consensus 792 A~~yi~~--lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~--~~~g----~~~~di~krL 863 (993)
T PLN02414 792 SYTYIAM--MGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFK--NTAG----IEPEDVAKRL 863 (993)
T ss_pred HHHHHHH--HCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccc--cccC----CCHHHHHHHH
Confidence 2333322 3467788888888999999999998744555543333322 223333110 0001 1678999999
Q ss_pred HHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 302 LDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 302 ~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
. ++||....-+ |-.++++|++++. +.+|||++++.+..+..+..
T Consensus 864 ~-d~Gihapt~~-~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~ 909 (993)
T PLN02414 864 M-DYGFHAPTMS-WPVPGTLMIEPTESESKAELDRFCDALISIREEIA 909 (993)
T ss_pred H-HcCcEEeeec-cccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 9 5588754422 3347899999988 88999999999988887765
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=160.44 Aligned_cols=300 Identities=16% Similarity=0.125 Sum_probs=206.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~ 80 (352)
-|+.++-..++. +.+++.++ .+.++|+++||+++..++.+.+++++.|++-.-.|.... .+++.+
T Consensus 30 ~YG~D~~~~~~e------~~~ae~~g-------~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~ 96 (342)
T COG2008 30 VYGEDPTTNALE------QRIAELFG-------KEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYTDECGAPEFF 96 (342)
T ss_pred CCCCCHHHHHHH------HHHHHHhC-------CceEEEecCccHHHHHHHHHhcCCCCeEEEeccccceecccCcHHHH
Confidence 477777777888 99999985 499999999999999999999999999999887776544 344444
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+-- ..++..+..+..+++++++..++. .+.++++.+.++..|+++|.+++++|.++|+++ |++|..|.+.-.
T Consensus 97 ~~~-~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~-~l~LHmDGAR~~ 174 (342)
T COG2008 97 GGG-QKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEH-GLPLHMDGARLA 174 (342)
T ss_pred cCC-ceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHh-CCceeechHHHH
Confidence 411 123333335567999999998863 345666666666899999999999999999999 999999998654
Q ss_pred cccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHH--HhcccC
Q 018665 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVA--ALGLGY 232 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~ 232 (352)
....... ++..... ...+.+..++||..+.++ -+.++.+++++++++.+........+.....++.. +|++
T Consensus 175 nA~valg-~~~~~~~--~~~D~v~~~~tK~g~~~~--gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~-- 247 (342)
T COG2008 175 NALVALG-VALKTIK--SYVDSVSFCLTKGGGAPV--GAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALED-- 247 (342)
T ss_pred HHHHHcC-CCHHHHH--hhCCEEEEecccCCccee--eeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhc--
Confidence 3221111 2222222 123366667899876443 24445899999998877666655555544444433 3432
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
+-|+ ....+-+.....|.+.|+..+|+++..|...+++++.+++.. .+.......+.. .|+.+.++
T Consensus 248 --~~~~-~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~~----------i~~l~~~~~~~~-~~~~~~~~ 313 (342)
T COG2008 248 --DVWR-LAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPESA----------IEALRLAGALFY-RGVLIGAH 313 (342)
T ss_pred --cHHH-HHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECChHH----------HHHHHhhchhhe-eeeeccCC
Confidence 2222 222333445888999999888999998888888999987631 022223333332 24554432
Q ss_pred CCCCCCCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 313 DAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 313 ~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
+ ..+|+..+. +++++++++..++++.
T Consensus 314 ~-----~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 314 G-----EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred C-----ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 1 478998887 8899999999998865
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-19 Score=159.70 Aligned_cols=210 Identities=17% Similarity=0.173 Sum_probs=159.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++- ..+..+.++||++|+..++.+++++||+|++++..|.+... .+++.|+++.+++..
T Consensus 70 ~~~a~LE-------g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~------ 136 (396)
T COG0626 70 EALAELE-------GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPG------ 136 (396)
T ss_pred HHHHHhh-------CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCC------
Confidence 7887774 47889999999999999999999999999999999998774 446789999988742
Q ss_pred cCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 97 LDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 97 ~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
+.+++++++. +++++|++..|.||+-.+.+ +.+|+++|+++ |+++|+|+++.... ..-+-..+-+
T Consensus 137 -~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~-g~~vvVDNTfatP~---------~q~PL~~GaD 202 (396)
T COG0626 137 -DDEALEAAIKEPNTKLVFLETPSNPLLEVPD---IPAIARLAKAY-GALVVVDNTFATPV---------LQRPLELGAD 202 (396)
T ss_pred -ChHHHHHHhcccCceEEEEeCCCCccccccc---HHHHHHHHHhc-CCEEEEECCccccc---------ccChhhcCCC
Confidence 4556666676 59999999999999999999 99999999999 99999999987521 1111123566
Q ss_pred EEEeccccccccc-cceeEEEEcChh-HHHHHHhhhh-ccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAMT-GWRLGYIAGPKH-FVAACNKIQS-QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 176 i~~~s~sK~~g~~-g~~~g~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
|++.|.+|.++.. ..=.|.++++.+ +.+.+..... ..+..++++....+.+.+++ +.-+.++..++...+
T Consensus 203 IVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkT-------L~~Rm~~~~~nA~~I 275 (396)
T COG0626 203 IVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRT-------LALRMERHNENALKI 275 (396)
T ss_pred EEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccch-------HHHHHHHHHHHHHHH
Confidence 9999999999523 344565665554 4444433333 35667788887777766654 555566677778888
Q ss_pred HHHhcccCCcee
Q 018665 253 VKSFGELEGVKM 264 (352)
Q Consensus 253 ~~~l~~~~g~~~ 264 (352)
.+.|++.|.++-
T Consensus 276 A~~L~~~p~V~~ 287 (396)
T COG0626 276 AEFLADHPKVKK 287 (396)
T ss_pred HHHHhcCCCeEE
Confidence 888888766643
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=166.39 Aligned_cols=280 Identities=12% Similarity=0.115 Sum_probs=200.7
Q ss_pred HHHHHHHHhcCCCC-CCCcEEEeCC-hHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcCCeEEEecccCCCCc-
Q 018665 21 QQFVINLKENGLSY-TPDQILVSNG-AKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENF- 95 (352)
Q Consensus 21 ~~ia~~~~~~~~~~-~~~~i~~~~g-~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i~~~~~~~~- 95 (352)
+.++++++ . +..+|++++| +|++++.++..+.++++++++...+.++.+ ..++..|. ++.+..++..+|
T Consensus 44 ~~l~~l~~-----~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~ 117 (349)
T TIGR01364 44 SDLRELLN-----IPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYT 117 (349)
T ss_pred HHHHHHhC-----CCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCC
Confidence 66666654 3 2356777755 999999999999988999888877666544 78889999 777775432222
Q ss_pred -ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 96 -LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 96 -~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
.+++++++ +++++++|.+++..+.||...+ ++++.+ ++++++|.+++. +..+..+.. .+
T Consensus 118 ~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~--------~l~~~~-~~l~iVDavss~----g~~~id~~~----~d- 177 (349)
T TIGR01364 118 KIPDPSTWE--ISEDAAYVHYCANETIHGVEFR--------ELPDVK-NAPLVADMSSNI----LSRPIDVSK----FG- 177 (349)
T ss_pred CCCCHHhcC--CCCCCCEEEEcCCCCcccEecc--------eecccC-CCeEEEEccccc----cCccCCHHH----cc-
Confidence 35666655 3468899999999999999876 556678 999999999875 332333322 23
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhh----------h--hccccCCChHHHHHHHHHhcccCCChH-HHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI----------Q--SQFTSGASSISQKAGVAALGLGYAGGE-VVSKM 241 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 241 (352)
++++|.+|.+|.+ ++|+++.++++++++... . ....+++|.....++.++++.- ..+ .++.+
T Consensus 178 -~~~~ssqK~lgP~--Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l--~~~gG~e~i 252 (349)
T TIGR01364 178 -LIYAGAQKNIGPA--GLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWL--KEQGGVKAI 252 (349)
T ss_pred -EEEEecccccCCC--ceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHH--HHcCCHHHH
Confidence 8899999999844 489999999888765221 1 1223578888888888888862 234 58999
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCC----CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~ 317 (352)
.++.+++.+++++.|++++|+..... +....+.+.+++.. ...++...+.+ .|+.+.+|.. .
T Consensus 253 ~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~-----------~~~~~~~~~~~-~Gi~~~~~~~--~ 318 (349)
T TIGR01364 253 EKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEE-----------LEKRFLKEAEE-RGLVSLKGHR--S 318 (349)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChh-----------HhHHHHHHHHH-CCCcccCCcc--c
Confidence 99999999999999999977644421 23344555655320 23566566665 4887777654 3
Q ss_pred CCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 318 DTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 318 ~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
.+.+|+|+.. +.||++++++.|+++.+.
T Consensus 319 ~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 319 VGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred cCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 5799999987 899999999999997753
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-19 Score=165.38 Aligned_cols=291 Identities=14% Similarity=0.177 Sum_probs=187.0
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHH-HHHhcC-------------CeEEEecccCCCC--cc-c
Q 018665 37 DQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPE-MARIAD-------------ATPVILPTRISEN--FL-L 97 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~-~~~~~g-------------~~v~~i~~~~~~~--~~-~ 97 (352)
+.++++++|++|++.+++... ....+|+.....|++... .+...+ ..+..+|.++... +. .
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 183 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEP 183 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCC
Confidence 589999999999999998642 223568888877777653 332222 1233344332110 00 0
Q ss_pred C-------HHHHHhhc-----cCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 98 D-------PKVLESKL-----TEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 98 d-------~~~l~~~l-----~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
+ ++++++.+ .+++.+|++...++..|.. +|.+.+++|.++|++| |+++|+||++.++...|.. ..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~-g~llI~DEv~tg~GrtG~~-~a 261 (445)
T PRK08593 184 DANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREH-GILFAVDDIQQGLGRTGKW-SS 261 (445)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCchH-HH
Confidence 1 23444433 2467788888778777876 6888999999999999 9999999999988766542 11
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
.......++ +.+++|.+| +|+++|++++++++++.+......++++.++..++++.++++.-.. . ++.++
T Consensus 262 ~~~~gv~pD----i~t~gK~l~-~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~-~----~l~~~ 331 (445)
T PRK08593 262 ISHFNITPD----LMSFGKSLA-GGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIED-E----SLLQR 331 (445)
T ss_pred HHhcCCCCC----Eeeeccccc-CCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHh-c----cHHHH
Confidence 121211112 557899998 7899999999999998876444556778999999989998875211 2 33344
Q ss_pred HHHHHHHHHHHhc----ccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCe
Q 018665 245 FRERRDFLVKSFG----ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 320 (352)
Q Consensus 245 ~~~~~~~l~~~l~----~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~ 320 (352)
.+++-+++.+.|+ +.+.+.-+. ..|.++.+.+.......... ......+.+.++++ ||.+.+. ..+.
T Consensus 332 ~~~~g~~l~~~L~~l~~~~~~v~~vr-G~Gl~~gi~l~~~~~~~~~~---~~~~~~~~~~~~~~-Gv~~~~~----~~~~ 402 (445)
T PRK08593 332 SAEKGEYARKRFDQWVSKYNFVGDVR-GYGLSIGIDIVSDKKLKTRD---NEAALKICNYCFEH-GVVIIAV----AGNV 402 (445)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEe-ccceEEEEEEecCCCcCCCc---HHHHHHHHHHHHHC-CeEEecc----CCCE
Confidence 4444444444444 343232222 33555555553211000000 00245688888865 9988653 2468
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 321 IRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 321 iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+|+.++. +++|++++++++.++++++..
T Consensus 403 lr~~p~l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 403 LRFQPPLVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred EEEECCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 9998887 999999999999999987754
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=167.77 Aligned_cols=286 Identities=13% Similarity=0.162 Sum_probs=190.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc---C-C-CCEEEecCCCCCChHHH-HHhcCCeEEE---ecccCCCC--cccCHHHHHh
Q 018665 36 PDQILVSNGAKQSILQAVLAVC---S-P-GDEVIIPAPFWVSYPEM-ARIADATPVI---LPTRISEN--FLLDPKVLES 104 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~---~-~-~~~vl~~~~~~~~~~~~-~~~~g~~v~~---i~~~~~~~--~~~d~~~l~~ 104 (352)
.+.++++++|++|++.+++... . + ..+|+.....|++.... +...+..... .+..+.-. .-.|.+.+++
T Consensus 141 ~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 220 (459)
T PRK11522 141 LKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRT 220 (459)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHH
Confidence 3689999999999999998643 1 1 24688888888876533 3222211110 11110000 0026677777
Q ss_pred hcc------CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEE
Q 018665 105 KLT------EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 177 (352)
Q Consensus 105 ~l~------~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (352)
.++ +++.++++...+...|.. .|.+.++++.++|++| |+++|+||++.+++..|.. .........+|
T Consensus 221 ~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~-g~llI~DEV~tG~GRtG~~-~a~e~~gv~PD---- 294 (459)
T PRK11522 221 ALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEF-GALLILDEVQTGMGRTGKM-FACEHENVQPD---- 294 (459)
T ss_pred HHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHc-CCEEEeccceecCCccchh-hhhhccCCCCC----
Confidence 664 356677777777777875 5677899999999999 9999999999988666652 12222221122
Q ss_pred Eecccccccccc-ceeEEEEcChhHHHHHHh--hhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 178 VNGFSKAFAMTG-WRLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 178 ~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
+.+++|.+| +| +++|.+++++++.+.+.. .....+++.|+...+++.+.++.-.. + .+.++.+++-+++.+
T Consensus 295 ivt~gK~lg-gG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~-~----~l~~~~~~~g~~l~~ 368 (459)
T PRK11522 295 ILCLAKALG-GGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLE-Q----NLPAQAEQKGDYLLD 368 (459)
T ss_pred EEEechhhh-CCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHH
Confidence 447899998 78 699999999998887642 23455677899999999999886221 2 344555555566666
Q ss_pred Hhccc----CC-ceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--
Q 018665 255 SFGEL----EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-- 327 (352)
Q Consensus 255 ~l~~~----~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-- 327 (352)
.|+++ |. +.-+. ..|.++.+++.+. .....+.+.|+++ ||.+.+.. ...+.+|+.++.
T Consensus 369 ~L~~l~~~~~~~i~~Vr-G~Gl~~giel~~~-----------~~~~~i~~~l~~~-Gvl~~~~~--~~~~~lr~~Ppl~~ 433 (459)
T PRK11522 369 GFRQLAREYPDLVQEAR-GKGMLMAIEFVDN-----------EIGYNFASEMFRQ-RVLVAGTL--NNAKTIRIEPPLTL 433 (459)
T ss_pred HHHHHHHhCCCceeeEE-eceeEEEEEecCc-----------hHHHHHHHHHHHC-CeEEEecC--CCCCEEEEECCccC
Confidence 66543 22 22222 3466677777542 0356788888875 99987532 135789998887
Q ss_pred CHHHHHHHHHHHHHHHhhhCC
Q 018665 328 SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 328 ~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+++|+++++++|.++++++..
T Consensus 434 t~~~id~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 434 TIEQCEQVLKAARKALAAMRV 454 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987653
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-19 Score=164.08 Aligned_cols=212 Identities=12% Similarity=0.132 Sum_probs=154.2
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH----HHHHhcCCeEEEecccCCCC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISEN 94 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~----~~~~~~g~~v~~i~~~~~~~ 94 (352)
|++.+|++.+ .+..++++++++|+..++.+++++||+|+++...|.+.. ..++..|+++++++.+
T Consensus 74 le~~la~l~g-------~~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---- 142 (437)
T PRK05613 74 LENRIASLEG-------GVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENP---- 142 (437)
T ss_pred HHHHHHHHhC-------CCeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCC----
Confidence 3488888875 345566666668888888888899999999999999874 4557889999999721
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
.|++++++++++++++|+++++.||+|.+.| +++|+++|+++ |+++|+|.+++.. ....++ . .+-
T Consensus 143 --~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~-gi~livD~t~a~g----~~~~p~-~----~Ga 207 (437)
T PRK05613 143 --DDPESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEVAHRN-QVPLIVDNTIATA----ALVRPL-E----LGA 207 (437)
T ss_pred --CCHHHHHHhCCccCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCeEEEECCCccc----cccChH-H----hCC
Confidence 2789999999999999999999999999999 99999999999 9999999998642 111111 1 244
Q ss_pred eEEEeccccccccccceeEEEEc-ChhH-----------------------------------H-HHHHhhhhccccCCC
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAG-PKHF-----------------------------------V-AACNKIQSQFTSGAS 217 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~-~~~~-----------------------------------~-~~~~~~~~~~~~~~~ 217 (352)
++++.|++|.++..|..+|.+++ +.++ . +.........+...+
T Consensus 208 Divv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 287 (437)
T PRK05613 208 DVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLS 287 (437)
T ss_pred CEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCC
Confidence 59999999999755555555443 3210 0 011122334455677
Q ss_pred hHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCce
Q 018665 218 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 263 (352)
Q Consensus 218 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 263 (352)
++....+...+++ +..+.++..++...+.+.|++.|.+.
T Consensus 288 p~~a~l~~rgl~T-------L~lR~~~~~~nA~~lA~~L~~hp~V~ 326 (437)
T PRK05613 288 PFNAWVTAQGLDT-------LSLRLERHNENAIKVAEFLNNHEKVA 326 (437)
T ss_pred HHHHHHHHcccCc-------HHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 7777666655544 55566677778888999999887653
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-20 Score=166.84 Aligned_cols=304 Identities=13% Similarity=0.083 Sum_probs=203.4
Q ss_pred HHHHHHHHhcCCCCC-C-CcEEE--eCChHHHHHHHHHHhcC--------C-----CCEEEecCCCCCChHHHHHhcCCe
Q 018665 21 QQFVINLKENGLSYT-P-DQILV--SNGAKQSILQAVLAVCS--------P-----GDEVIIPAPFWVSYPEMARIADAT 83 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~-~-~~i~~--~~g~~~a~~~~~~~l~~--------~-----~~~vl~~~~~~~~~~~~~~~~g~~ 83 (352)
+.++++++ .+ + +++.+ |+|+|++++.++.+... . ...|+++.-.|.++..+++..|++
T Consensus 87 ~~la~llg-----~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~ 161 (431)
T TIGR01788 87 NMLADLWH-----APAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVE 161 (431)
T ss_pred HHHHHHhC-----CCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCce
Confidence 55555554 33 2 45554 89999999988865421 1 136899999999999999999999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-----CEEEEeccccccccc-
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-----RLLVLSDEIYEHIIY- 157 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~-----~~~livD~~~~~~~~- 157 (352)
++.+|++. +++.+|+++|++++++++.+|+++..+|.+|.+.| +++|+++|++++ |+++++|.+++++..
T Consensus 162 v~~i~~d~-~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p 237 (431)
T TIGR01788 162 LREVPMDP-GRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYED---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAP 237 (431)
T ss_pred eEEEecCC-CceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCC---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHH
Confidence 99999975 34569999999999999999999999999999999 889999998873 699999999996431
Q ss_pred --CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChh--HHHHHHhh---h----hccccCCChHHHHHHHH
Q 018665 158 --APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAACNKI---Q----SQFTSGASSISQKAGVA 226 (352)
Q Consensus 158 --~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~--~~~~~~~~---~----~~~~~~~~~~~~~~~~~ 226 (352)
.+.....+. ...-+.+..|.||++. +..++|+++.+++ +.+.+... . ...+...+.....++..
T Consensus 238 ~~~~~~~~~~~----~~~~DSis~s~HK~~~-~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~ 312 (431)
T TIGR01788 238 FVYPDLEWDFR----LPRVKSINVSGHKYGL-VYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQ 312 (431)
T ss_pred HhCCCchhhcC----CCCceEEEECchhccC-CCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHH
Confidence 122222221 1234468889999862 3445788876553 22322110 0 00111122222112222
Q ss_pred HhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHcc
Q 018665 227 ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 305 (352)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (352)
.+....+....++++.++..++.+++.+.|++.++++++.+ +....+.+++.+... .+ .+..++.+.|.++
T Consensus 313 w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~---~~----~~~~~l~~~L~~~- 384 (431)
T TIGR01788 313 YYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDAD---PG----YTLYDLSHRLRER- 384 (431)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCC---CC----cCHHHHHHHHHHC-
Confidence 22211123577888899999999999999999988998865 333445555543100 00 1677899988876
Q ss_pred CEEeccCCC---CCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 306 QVALVPGDA---FGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 306 gi~i~~g~~---~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
|+.+..-.. ....-++|+++.. +.+.++++++.|++++..+
T Consensus 385 G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 385 GWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred CCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 876433221 1122468998864 7899999999999998764
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=167.01 Aligned_cols=298 Identities=14% Similarity=0.086 Sum_probs=187.7
Q ss_pred CcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHHHHH-hcC------------CeEEEecccCCCC-
Q 018665 37 DQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPEMAR-IAD------------ATPVILPTRISEN- 94 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~~~~-~~g------------~~v~~i~~~~~~~- 94 (352)
+.+++++||++|++.+++.... ...+|+.....|++....+. ..+ ..+..++.+....
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (451)
T PRK07678 106 YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRM 185 (451)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccc
Confidence 5899999999999999987421 12578888888887654332 211 1122233221110
Q ss_pred -cc-----cC---HHHHHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 95 -FL-----LD---PKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 95 -~~-----~d---~~~l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
+. .+ ++.+++.+. +++.+|++...+...|.. +|.+.++++.++|++| |+++|+||++.+|...|.
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~tGfGRtG~ 264 (451)
T PRK07678 186 PGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKH-GALLISDEVICGFGRTGK 264 (451)
T ss_pred cccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhcCCcCch
Confidence 00 01 233555553 467788887777666766 5677999999999999 999999999999877664
Q ss_pred CccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh------hhccccCCChHHHHHHHHHhcccCC
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
. ..+....-. .-+.+++|.+| +| +++|.+++++++.+.+... ....+++.|++..+++.++++.-..
T Consensus 265 ~-~~~~~~gv~----PDivt~gK~lg-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~ 338 (451)
T PRK07678 265 A-FGFMNYGVK----PDIITMAKGIT-SAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN 338 (451)
T ss_pred h-HHHHhcCCC----CCEEEeecccc-cCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHh
Confidence 2 112222211 22557799998 67 6999999999998887631 3456788999999999999986211
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
++..+++.+.-...++.+.+.+++.+.+.-+. ..|.++.+++........... .....++.+.++++ |+.+.+..
T Consensus 339 -~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vr-g~Gl~~~i~~~~~~~~~~~~~--~~~a~~i~~~l~~~-Gv~~~~~g 413 (451)
T PRK07678 339 -ENLIERSAQLGELLLEQLKEELGEHPLVGDIR-GKGLLVGIELVNDKETKEPAD--NDKVASVVAACKEK-GLIIGKNG 413 (451)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE-eeceEEEEEEecCCcccCcCc--hHHHHHHHHHHHHC-CcEEeecC
Confidence 22233333333444444444444443332233 345556666532111000000 00245778888876 99986632
Q ss_pred C--CCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 314 A--FGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 314 ~--~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
. ....+.+|++++. +++||+++++++.++++++
T Consensus 414 ~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 414 DTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred ccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 1 1224789999887 9999999999999999865
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=158.94 Aligned_cols=300 Identities=15% Similarity=0.163 Sum_probs=199.7
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHH-hcCC---------------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMAR-IADA--------------- 82 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~-~~g~--------------- 82 (352)
+.+.+.+ ..-+.|-+++++|+|...+++... -..++|+....||+++.+.+. ..|.
T Consensus 100 ell~~~~------p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~ 173 (432)
T COG0001 100 ELLIERV------PSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPA 173 (432)
T ss_pred HHHHHhc------CcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCCh
Confidence 5555554 245999999999999999988642 234799999999998886443 3331
Q ss_pred ----eEEEecccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 83 ----TPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 83 ----~v~~i~~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
.+..+|. .|++.+++++++ +..+|++.......|.+ +.++++++|.++|+++ |+++|.||+..+
T Consensus 174 ~~a~~ti~~~y-------ND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~-G~lLI~DEViTG 245 (432)
T COG0001 174 DVAKHTLVLPY-------NDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEH-GALLIFDEVITG 245 (432)
T ss_pred hhhccEEEecC-------CCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEecchhh
Confidence 1222221 278888888863 67777776665445664 5566899999999999 999999999988
Q ss_pred cccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh---hccccCCChHHHHHHHHHhccc
Q 018665 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~ 231 (352)
|...-.....+..+ ..-+.+++|.+| +|+++|.+-++.++++.+.... ...+++.|+..+.|..+.++.-
T Consensus 246 FR~~~gGaq~~~gi------~PDlttlGKiIG-GGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l 318 (432)
T COG0001 246 FRVALGGAQGYYGV------EPDLTTLGKIIG-GGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEEL 318 (432)
T ss_pred cccCCcccccccCc------Ccchhhhhhhhc-CCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHH
Confidence 75432222233322 234889999999 9999999999999999876443 3346788999999999988752
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCC--CCChHHHHHHHHHccCEEe
Q 018665 232 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK--IENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~i 309 (352)
...+...+++.+.-.+.++-+.+.+.+. ++.+.....|-++.+.+.+.....+..... .+.-..+.+.|+++ ||++
T Consensus 319 ~~~~~~y~~l~~~~~~L~~gl~~~~~~~-g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l 396 (432)
T COG0001 319 MTEEGVYERLDALGERLAEGLRAAAERH-GIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYL 396 (432)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-Cccc
Confidence 1101134444444444555555555555 777765554444444433211111110000 00123466678876 9999
Q ss_pred ccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 310 VPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 310 ~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
.|+. -...-+|.++++++|++.++.+.++++++.
T Consensus 397 ~ps~----~ea~flS~ahte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 397 APSQ----FEAGFLSTAHTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred CCcc----ccceeeecccCHHHHHHHHHHHHHHHHHhh
Confidence 8863 245578888999999999999999988764
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=168.23 Aligned_cols=278 Identities=14% Similarity=0.134 Sum_probs=190.9
Q ss_pred HHHHHHHHhcCCCC-CCCcEEEeCC-hHHHHHHHHHHhcC---CCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCc
Q 018665 21 QQFVINLKENGLSY-TPDQILVSNG-AKQSILQAVLAVCS---PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 95 (352)
Q Consensus 21 ~~ia~~~~~~~~~~-~~~~i~~~~g-~~~a~~~~~~~l~~---~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~ 95 (352)
+.++++++ . ++++|++++| +|++++.++..+.. +++.|+. .+....+...++..|.+++.++.+.+.++
T Consensus 51 ~~l~~l~~-----~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~ 124 (355)
T cd00611 51 SDLRELLN-----IPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKY 124 (355)
T ss_pred HHHHHHhC-----CCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCC
Confidence 88888886 4 4578999977 99999999999976 4444433 33333334577899999999998643222
Q ss_pred ccC-HHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 96 LLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 96 ~~d-~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
.+ ++..+..+++++++|.+++..|.||...+ ++++.+ |+++++|.+++. |..+..+... +
T Consensus 125 -~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~--------~i~~~~-g~~~~VDa~qs~----g~~~idv~~~----~- 185 (355)
T cd00611 125 -TKIPDVETWDLAPDAAYVHYCSNETIHGVEFD--------EVPDTG-GVPLVADMSSNI----LSRPIDVSKF----G- 185 (355)
T ss_pred -CCCCCHhhcCCCCCCCEEEEeCCcccccEEcc--------eecccC-CCeEEEEccccc----cCCCCCHHHh----C-
Confidence 13 33333445678999999999999999844 234458 999999999986 3333333321 2
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhh------------hhccccCCChHHHHHHHHHhcccCCChH-HHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI------------QSQFTSGASSISQKAGVAALGLGYAGGE-VVSKM 241 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 241 (352)
+++.|.+|.+|.+ ++|++++++++++++... ...+..++|.....++.++++.- ... .++.+
T Consensus 186 -~~~ss~~K~lGP~--G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l--~~~gg~e~i 260 (355)
T cd00611 186 -VIYAGAQKNLGPA--GVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWL--KEQGGVEAM 260 (355)
T ss_pred -EEEeecccccCCC--ceEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHcCCHHHH
Confidence 4667789988744 589999999888765421 01113567888888888888752 133 58888
Q ss_pred HHHHHHHHHHHHHHhcccCCce-ec-C--CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC
Q 018665 242 VKAFRERRDFLVKSFGELEGVK-MS-E--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~-~~-~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~ 317 (352)
.++.+++.+++.+.|+++||+. .. . .+.+..+.+.+++.. ...++.+.+.+ .|+.+.++.. .
T Consensus 261 ~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~~-----------l~~~~~~~~~r-~G~~~~~~~~--~ 326 (355)
T cd00611 261 EKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKEE-----------LEKEFLKEAEA-AGMIGLKGHR--S 326 (355)
T ss_pred HHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCChh-----------hhHHHHHHHHH-CCCcccCCCc--c
Confidence 9999999999999999998863 21 1 123344555655320 23444455554 4887666543 3
Q ss_pred CCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 318 DTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 318 ~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
.+.+|+|+.. +++|++++++.|+++
T Consensus 327 ~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 327 VGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred cCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 5799999988 999999999999985
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=149.38 Aligned_cols=302 Identities=18% Similarity=0.234 Sum_probs=210.8
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChH---HHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYP---EMAR 78 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~---~~~~ 78 (352)
.|+.++...+|+ +..|+.++ +..-+|+ +|+|.++.++++.. -++|..|++.+-+|.... .+..
T Consensus 51 VyGeD~tt~rLE------~~vA~l~G------KEAgLFv-~SGTmgNllaIm~Hc~~rg~eii~gd~~HI~~~E~gg~s~ 117 (384)
T KOG1368|consen 51 VYGEDPTTNRLE------QRVAELFG------KEAGLFV-PSGTMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQGGISQ 117 (384)
T ss_pred cccCCccHHHHH------HHHHHHhC------ccceeee-cccccccHHHHHHHhcCCCceEEeccchheeehhccChhh
Confidence 588889999999 99999986 4444555 45555566666664 558899999988776444 3455
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhccC--------CeeEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEec
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLTE--------KSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~--------~~~~i~i~~p~nptG-~~~~~~~l~~l~~~~~~~~~~~livD 149 (352)
..|+.+.++... .+.-+++++++++++. -+++|++.|.+|.+| .++|.+++.++.++|+++ ++.+..|
T Consensus 118 l~gv~~~tv~~e--~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~-glkLH~D 194 (384)
T KOG1368|consen 118 LAGVHVRTVKNE--NDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRH-GLKLHMD 194 (384)
T ss_pred hccceeEeeeeC--CCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhcc-CCeeecc
Confidence 677787777765 4445899999999962 468999999976555 999999999999999999 9999999
Q ss_pred ccccccccCCCCccccccCCCCCCceEEEeccccccccccceeE-EEEcChhHHHHHHhhhhccccCCChHHHHHHHHHh
Q 018665 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAAL 228 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 228 (352)
.+.-+-..... ..++..+....+ -+--.+||.+|.| +| .++++.+++++.+..+...+.+.-..+..++++..
T Consensus 195 GARi~NAavas-gV~vk~i~~~fD--SVsiCLSKglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLv 268 (384)
T KOG1368|consen 195 GARIFNAAVAS-GVPVKKICSAFD--SVSICLSKGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALV 268 (384)
T ss_pred hhhhhhHHHHc-CCCHHHHHHhhh--hhhhhhhccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 98654322111 123333322112 1233578988733 44 55689999999887766666677666666666655
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 229 GLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
.. .+... ....-.++...+.+.++..+++.+-.+ ....++.+.+.... .+++.+++.+.+. ||
T Consensus 269 al----~~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~----------~~~~~l~~~~~k~-gi 332 (384)
T KOG1368|consen 269 AL----DENVP-LLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQAR----------LTAEELCKFLEKN-GI 332 (384)
T ss_pred Hh----hcchH-HHHHHHHHHHHHHHHhccccceeeecchhhcceeeeeccccc----------CCHHHHHHHHHHC-Ce
Confidence 53 23333 445556677778888888766777655 33444555443221 2899999998865 99
Q ss_pred EeccCCCCCCCCeEEEEeec--CHHHHHHHHHHH-HHHHhhh
Q 018665 308 ALVPGDAFGDDTCIRISYAA--SLTTLQAAVERI-KKGLLTL 346 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l-~~~~~~~ 346 (352)
.+..+. ...+|+.+++ +.++++..+..+ +.++.++
T Consensus 333 ~lm~~~----s~r~Rivlh~Qvt~~~ve~~~~~~~k~~~~q~ 370 (384)
T KOG1368|consen 333 LLMGGA----SRRIRIVLHHQVTDEDVEYVKSVLSKKFLKQL 370 (384)
T ss_pred EEeecc----ccceEEEEEEecCHHHHHHHHHHHHHHHHhhc
Confidence 998864 4458999998 999999999999 5554443
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-19 Score=157.75 Aligned_cols=309 Identities=15% Similarity=0.151 Sum_probs=212.1
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH-HHhcCC
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIADA 82 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~-~~~~g~ 82 (352)
|+.++.+.+++ +.++++++ .++++.+++++.|++.+....+++||.| +.+.|...... ....|.
T Consensus 67 yag~~s~~~lE------~~va~~~G-------~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~Ga 131 (450)
T TIGR02618 67 YAGSRNFYHLE------RTVRELYG-------FKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKNGA 131 (450)
T ss_pred hcCCCcHHHHH------HHHHHHHC-------CCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhCCe
Confidence 77778888888 99999985 6789999999999998776778999976 77777555544 688888
Q ss_pred eEEEecccC--------CCCcccCHHHHHhhccC----CeeEEEEcCCCC-CcccCCCHHHHHHHHHHHHhCCCEEEEec
Q 018665 83 TPVILPTRI--------SENFLLDPKVLESKLTE----KSRLLILCSPSN-PTGSVYPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 83 ~v~~i~~~~--------~~~~~~d~~~l~~~l~~----~~~~i~i~~p~n-ptG~~~~~~~l~~l~~~~~~~~~~~livD 149 (352)
.++-++.++ ..++.+|+++|++++++ +++++.+++++| .+|+++|.+.++++.++|+++ |+.+|.|
T Consensus 132 v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~-Gl~vi~D 210 (450)
T TIGR02618 132 TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAH-GIKVFYD 210 (450)
T ss_pred EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHc-CCEEEEE
Confidence 655554331 23466899999999975 345677888877 458999999999999999999 9999999
Q ss_pred ccccc-ccc------CCCCccccc----cCCCCCCceEEEeccccccccccceeEEEE-cChhHHHHHHhhhhccc----
Q 018665 150 EIYEH-IIY------APATHTSFA----SLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFT---- 213 (352)
Q Consensus 150 ~~~~~-~~~------~~~~~~~~~----~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~-~~~~~~~~~~~~~~~~~---- 213 (352)
.++.. ..+ .+....+.. .+.. .-+.++.|..|..+.+- .|+++ .+++++++++.....+.
T Consensus 211 aAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~--~aD~~~~S~~Kd~~~~~--GG~l~~~d~~l~~k~r~~~~~~eG~~t 286 (450)
T TIGR02618 211 ATRCVENAYFIKEREQGYEDKSIAEILKEMMS--YADGCTMSGKKDCLVNI--GGFLCMNDDEMFQSAKELVVVFEGMPS 286 (450)
T ss_pred ccchhhChhhhhcccccccCCCHHHHHHHHhc--cCcEEEEeeccCCCCCC--ceEEEeCCHHHHHHHHHHhhhcCCccc
Confidence 99875 111 112223331 1111 12258888889876441 25555 57889888877643321
Q ss_pred -cCCChHHHHHHHHHhcccCCChHHHH-HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecC----CccCCcccC
Q 018665 214 -SGASSISQKAGVAALGLGYAGGEVVS-KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS----TYYGSEAEG 287 (352)
Q Consensus 214 -~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~----~~~~~~~~~ 287 (352)
.+.+.-.+.+++.++.. ..+ ...++-....++|.+.|.+. |+.++.|.+|..++++.. ......
T Consensus 287 yGgla~r~~~ala~gL~e------~~~~~y~~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lph~~~~~--- 356 (450)
T TIGR02618 287 YGGLAGRDMEAMAIGIRE------AVDYEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLPHIPQDQ--- 356 (450)
T ss_pred cCchhhhhHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCCCCChhh---
Confidence 22344444444545543 222 22222333467888888888 999988888988888753 332222
Q ss_pred CCCCCChHHHHHHHHHccCEEecc-CCCC-C-C----------CCeEEEEeec---CHHHHHHHHHHHHHHHhhh
Q 018665 288 FGKIENSESLCRYLLDKAQVALVP-GDAF-G-D----------DTCIRISYAA---SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 288 ~~~~~~~~~~~~~l~~~~gi~i~~-g~~~-~-~----------~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~ 346 (352)
+ .+..++.+|....||--.- |+.. + . -..+|+.++. |.+.++...+.|..+.++-
T Consensus 357 ~----p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~ 427 (450)
T TIGR02618 357 F----PAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHR 427 (450)
T ss_pred C----hHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhH
Confidence 2 6788999999888874222 2221 1 1 1479999987 8899999999998887653
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-20 Score=164.88 Aligned_cols=280 Identities=10% Similarity=0.056 Sum_probs=199.3
Q ss_pred HHHHHHHHhcCCCC-CCCcE-EEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSY-TPDQI-LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~-~~~~i-~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ . +..++ +++++++.+++.++..++.+++++++.....++.+ ..++..|.. +.+..+...+ .
T Consensus 55 ~~l~~l~~-----~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g-~ 127 (360)
T PRK05355 55 ADLRELLN-----IPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDG-F 127 (360)
T ss_pred HHHHHHhC-----CCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccC-C
Confidence 66666664 3 22345 55588889999999999999988887776665544 688888965 6666543122 2
Q ss_pred cCHHHHHh-hccCCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 97 LDPKVLES-KLTEKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 97 ~d~~~l~~-~l~~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
.+..++++ .+++++++|.+++..+.||... + +.+| + |+++|+|.+++. |..+..+.. .+
T Consensus 128 ~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~---i~~i------~-g~l~vVDavss~----g~~~idv~~----~d- 188 (360)
T PRK05355 128 TYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHE---LPDT------G-DVPLVADMSSDI----LSRPIDVSK----FG- 188 (360)
T ss_pred CCCCChhhccCCCCCCEEEEccCCCcceEecCc---cccc------C-CCcEEEEcCccc----cCccCCHHH----cc-
Confidence 34444444 7777899999999999999998 5 5555 8 999999999886 333333332 23
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhh-----------h-hccccCCChHHHHHHHHHhcccCCChH-HHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-----------Q-SQFTSGASSISQKAGVAALGLGYAGGE-VVSKM 241 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 241 (352)
+++.|.+|.+|.+ ++|++++++++++++... . ....+++|.....++.++++.. ..+ .++.+
T Consensus 189 -~~~~ssqK~lgP~--Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i--~~~gG~e~i 263 (360)
T PRK05355 189 -LIYAGAQKNIGPA--GLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWL--KEQGGVAAM 263 (360)
T ss_pred -EEEEeccccccCC--ceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHH--HHccCHHHH
Confidence 8899999999843 589999999888775431 1 1223678888999999888862 234 58899
Q ss_pred HHHHHHHHHHHHHHhcccCCceecC---CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCC
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSE---PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 318 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~ 318 (352)
.++.++..+++++.|++++.+..+. .+.+..+.+.+|+.. ...++.+.+.++ |+.+.++.. ..
T Consensus 264 ~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~-----------~~~~~~~~~~~~-Gi~~~~~~~--~~ 329 (360)
T PRK05355 264 EKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEE-----------LDKKFLAEAKAA-GLVGLKGHR--SV 329 (360)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChH-----------HHHHHHHHHHHC-CCcccCCCC--cc
Confidence 9999999999999999984322222 123344666666531 345666666654 888866642 35
Q ss_pred CeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 319 TCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 319 ~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
+.+|+|+.. +.+|++++++.|+++++.
T Consensus 330 g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 330 GGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 899999987 899999999999998764
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-20 Score=156.93 Aligned_cols=292 Identities=15% Similarity=0.178 Sum_probs=217.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 98 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d 98 (352)
+.+|+++. ++.-++.++.--|++..+.+|.+ +|..|......|-+++...+..++.-..+.. + |
T Consensus 223 ~eLA~LHq-------K~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns~v~K~IFrH----N---D 288 (570)
T KOG1360|consen 223 AELADLHQ-------KEAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRH----N---D 288 (570)
T ss_pred HHHHHHhc-------CcceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhcCCcceeecc----C---C
Confidence 88888884 44444555555666666666643 6778888888999999999999988777653 2 7
Q ss_pred HHHHHhhcc----CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 99 PKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 99 ~~~l~~~l~----~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
++.|++.+. .-+++|....+++.+|.+.| +++|++++++| |.+.++||++.-..|...+..--..-.-.+..
T Consensus 289 ~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcp---leelcDvah~y-GAiTFlDEVHAVGlYG~rGaGvgerdGvm~kv 364 (570)
T KOG1360|consen 289 LDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCP---LEELCDVAHKY-GAITFLDEVHAVGLYGPRGAGVGERDGVMHKV 364 (570)
T ss_pred HHHHHHHHHhCCCCCCceEEEeeeeccCCCcCC---HHHHHHHHHHh-CceeeeehhhhhccccCCCCCccccCCcchhh
Confidence 888888774 36788889999999999999 99999999999 99999999998766654432222211222345
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhhhhcc--ccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
+|+.+++.|+||+-| ||+.+...+++.++++...| +.+.+++.+..+..+...- ..+.-+.++..-+++..++
T Consensus 365 DiIsGTLgKafGcVG---GYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~l--k~~eg~~lR~~hqrnv~~~ 439 (570)
T KOG1360|consen 365 DIISGTLGKAFGCVG---GYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRIL--KSEEGRVLRRQHQRNVKYV 439 (570)
T ss_pred hhcccchhhhccccc---ceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHH--hhhhhHHHHHHHHHHHHHH
Confidence 588999999999777 99999999999999886544 4456666666666666541 1233356667778888999
Q ss_pred HHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC---CCCeEEEEeec--
Q 018665 253 VKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAA-- 327 (352)
Q Consensus 253 ~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~---~~~~iRi~~~~-- 327 (352)
++.|.+. |+.++++.+-+ +-+.+.+.. .+.++.+.|..++||++..-.... ....+||.+..
T Consensus 440 kq~l~~~-GiPVi~~pSHI-iPv~vgda~-----------l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~H 506 (570)
T KOG1360|consen 440 KQLLMEL-GIPVIPNPSHI-IPVRVGDAA-----------LAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHH 506 (570)
T ss_pred HHHHHHc-CCcccCCCcce-eeeeccCHH-----------HHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCC
Confidence 9999998 99998765554 555554431 467888999999999998755433 24579998876
Q ss_pred CHHHHHHHHHHHHHHHhhhCC
Q 018665 328 SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 328 ~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+.+.++.+++.+.++-.++..
T Consensus 507 T~~mm~~lv~~l~~vw~~v~l 527 (570)
T KOG1360|consen 507 TPQMMNILVNALLDVWNEVGL 527 (570)
T ss_pred CHHHHHHHHHHHHHHHHHcCC
Confidence 889999999999998887754
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-19 Score=160.65 Aligned_cols=281 Identities=18% Similarity=0.283 Sum_probs=190.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcc
Q 018665 18 SFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 18 ~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+|++.+++++ ..++++.++|+|.|+..++.++ .++||+|++|..+|..+..++...|.+++++++++ +++.
T Consensus 29 ~fE~~~a~~~-------g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~-~~~~ 100 (363)
T PF01041_consen 29 EFEKEFAEYF-------GVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDP-ETLN 100 (363)
T ss_dssp HHHHHHHHHH-------TSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BET-TTSS
T ss_pred HHHHHHHHHh-------CCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccC-CcCC
Confidence 4669999998 4889999999999999999998 47899999999999999999999999999999985 5678
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc-CCCCccccccCCCCCCce
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-APATHTSFASLPGMWERT 175 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~-~~~~~~~~~~~~~~~~~~ 175 (352)
+|++.+++++++++++|++.+. .|...+ +++|.++|+++ |+++|+|.+++.... .| ...... -+
T Consensus 101 id~~~~~~~i~~~t~ai~~~h~---~G~~~d---~~~i~~~~~~~-~i~lIeD~a~a~g~~~~g---~~~G~~-----gd 165 (363)
T PF01041_consen 101 IDPEALEKAITPKTKAILVVHL---FGNPAD---MDAIRAIARKH-GIPLIEDAAQAFGARYKG---RPVGSF-----GD 165 (363)
T ss_dssp B-HHHHHHHHHTTEEEEEEE-G---GGB------HHHHHHHHHHT-T-EEEEE-TTTTT-EETT---EETTSS-----SS
T ss_pred cCHHHHHHHhccCccEEEEecC---CCCccc---HHHHHHHHHHc-CCcEEEccccccCceeCC---EeccCC-----CC
Confidence 9999999999999999996554 467777 99999999999 999999999986432 22 112211 23
Q ss_pred EEEecc--ccccccccceeEEEEcC-hhHHHHHHhhhhc-----------------cccCCChHHHHHHHHHhcccCCCh
Q 018665 176 LTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQ-----------------FTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 176 i~~~s~--sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
+.+.|| +|.+. .| ..|+++++ +++.++++.+... ..+.++.+..+.+...|
T Consensus 166 ~~~fSf~~~K~i~-~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL------- 236 (363)
T PF01041_consen 166 IAIFSFHPTKIIT-TG-EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQL------- 236 (363)
T ss_dssp EEEEESSTTSSS--SS-S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHH-------
T ss_pred ceEecCCCCCCCc-CC-CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHH-------
Confidence 777777 58885 44 34777664 5666666544321 11234444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCC-CC----ce-EEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QG----AF-YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
+.+++..+.-+++.+.+.+.|.+++++..... .. .+ .+.+.+++... .+.+++.+.|.++ ||.+
T Consensus 237 ~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~---------~~rd~l~~~L~~~-GI~~ 306 (363)
T PF01041_consen 237 KRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL---------ADRDELVEALRAR-GIET 306 (363)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC---------STHHHHHHHHHHT-TBEE
T ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc---------chHHHHHHHHHHC-CCcc
Confidence 34666677777888899999999888754421 11 11 23344443210 1578899998877 9988
Q ss_pred ccCCC-C-C------C----------------CCeEEEEeec--CHHHHHHHHHHHH
Q 018665 310 VPGDA-F-G------D----------------DTCIRISYAA--SLTTLQAAVERIK 340 (352)
Q Consensus 310 ~~g~~-~-~------~----------------~~~iRi~~~~--~~~~l~~~~~~l~ 340 (352)
.+... . . . ...+.+.+.. +++++++.++.|+
T Consensus 307 ~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 307 RPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp BCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred cccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 77541 0 0 0 0246666665 8899999988774
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-19 Score=164.47 Aligned_cols=311 Identities=11% Similarity=0.045 Sum_probs=192.7
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc------C--CCCEEEecCCCCCChHHH-HHhcC----------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC------S--PGDEVIIPAPFWVSYPEM-ARIAD---------- 81 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~------~--~~~~vl~~~~~~~~~~~~-~~~~g---------- 81 (352)
..+|+.+...- +-.-+.+++++||++|++.+++... . ...+|+.....|++.... ....|
T Consensus 97 ~~lAe~L~~~~-p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~ 175 (461)
T PRK07482 97 ITLSKRIIDRA-PAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDL 175 (461)
T ss_pred HHHHHHHHHhC-CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCC
Confidence 55555554111 1124689999999999999998753 1 135788888888875422 11111
Q ss_pred --CeEEEecccCCCCc-----------ccCHHHHHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCC
Q 018665 82 --ATPVILPTRISENF-----------LLDPKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPR 143 (352)
Q Consensus 82 --~~v~~i~~~~~~~~-----------~~d~~~l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~ 143 (352)
..+..++.+..... ..+++.+++.+. +++.+|++...+...|.. .|.+.+++|.++|++| |
T Consensus 176 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~-g 254 (461)
T PRK07482 176 PIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKY-D 254 (461)
T ss_pred CCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHh-C
Confidence 11222322211000 013567777663 457788887777767766 5677999999999999 9
Q ss_pred EEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccc-eeEEEEcChhHHHHHHh-------hhhccccC
Q 018665 144 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNK-------IQSQFTSG 215 (352)
Q Consensus 144 ~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~-~~g~l~~~~~~~~~~~~-------~~~~~~~~ 215 (352)
+++|+||++.+|+..|.... ...... ..-+.+++|.++ +|. ++|.+++++++.+.+.. ....++++
T Consensus 255 iLlI~DEV~tGfGRtG~~~a-~~~~gv----~PDiv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~ 328 (461)
T PRK07482 255 ILLIADEVVTGFGRLGSMFG-SDHYGI----EPDLITVAKGLT-SAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYS 328 (461)
T ss_pred CEEEEeccccCCCcCcchhh-HHhcCC----CCCEEEEccccc-cCccccceeeecHHHHHHHhcccccCCccccCCCCC
Confidence 99999999999977764222 122221 122555789998 785 99999999998887752 12445778
Q ss_pred CChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCC-CCh
Q 018665 216 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI-ENS 294 (352)
Q Consensus 216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 294 (352)
.|+++.+++.+.++.-.. ++..++..+.-....+.+.+.+++++.+.-+. ..|.++.+++.+....+ ..+... ...
T Consensus 329 gnpl~~Aaa~a~L~~~~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vr-G~Glm~giel~~~~~~~-~~~~~~~~~~ 405 (461)
T PRK07482 329 GHPICAAAALANLDILER-ENLVGNAAEVGAYFRARLRAAFGDHPLVGEVR-GVGMLAAVEFVADRDDR-TPFDPALKIG 405 (461)
T ss_pred cCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe-eceeEEEEEeccCCCcC-CCCChhhHHH
Confidence 999999999999875211 22333333333333344444334443333333 44566667764321100 000000 013
Q ss_pred HHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 295 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 295 ~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
..+...++++ |+.+.++. ..+.+|+.++. +++|+++++++|+++++++
T Consensus 406 ~~i~~~~~~~-Gvl~~~~~---~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 406 PQVSAAALER-GVIARAMP---HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred HHHHHHHHHC-CcEEecCC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5678888875 88886532 24678998765 9999999999999999765
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-18 Score=161.08 Aligned_cols=291 Identities=14% Similarity=0.120 Sum_probs=181.9
Q ss_pred EEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHh-cC------------CeEEEecccCCCC--cc----c
Q 018665 39 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-AD------------ATPVILPTRISEN--FL----L 97 (352)
Q Consensus 39 i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~-~g------------~~v~~i~~~~~~~--~~----~ 97 (352)
+++++||++|++.+++... ....+|+.....|++....+.. .+ ..+..++.+.... +. .
T Consensus 105 ~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (442)
T TIGR00709 105 QFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEA 184 (442)
T ss_pred EEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchh
Confidence 5667999999999998753 2346788888888877643332 22 1123333321110 00 0
Q ss_pred CH----HHHHhhcc------CCeeEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccc
Q 018665 98 DP----KVLESKLT------EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 98 d~----~~l~~~l~------~~~~~i~i~~p~nptG-~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
+. +.+++.+. +++.++++...++..| ..+|.+.++++.++|++| |+++|.||++.++.++|. .....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~-~~a~~ 262 (442)
T TIGR00709 185 GSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKH-DIKLILDEVQAGFGRSGT-MFAFE 262 (442)
T ss_pred HHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCCc-hhHHH
Confidence 11 11233332 3667777777665555 457899999999999999 999999999999987774 22322
Q ss_pred cCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 246 (352)
..... ++ +.+++|.++ .|+++|+++++++ ++.+.......+++.|++.++++.++++... + +.+.++.+
T Consensus 263 ~~gv~-PD---iv~~gK~l~-~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~--~---~~l~~~~~ 331 (442)
T TIGR00709 263 HAGIE-PD---FVVMSKAVG-GGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWK--D---DNLAQNAQ 331 (442)
T ss_pred HcCCC-Cc---EEEEccccc-CCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHH--h---cCHHHHHH
Confidence 22221 22 334899998 6899999999888 4554333345678899999999999997511 1 23344555
Q ss_pred HHHHHHHHHhcc----cCCceecCCCCceEEEeecCCccCC-cccC-CC-CCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 247 ERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGS-EAEG-FG-KIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 247 ~~~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
++.+++.+.|++ .|.+.-+. ..|.++.+++.+.... .... .. .......+...++++ |+.+.+... ..+
T Consensus 332 ~~g~~l~~~L~~l~~~~~~v~~vr-G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~~--~~~ 407 (442)
T TIGR00709 332 ERGERITSFLDDMIKEHPCIGNVR-GRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFEN-GLLLETGGR--EGE 407 (442)
T ss_pred HHHHHHHHHHHHHHHhCCCeeeee-ccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHC-CeEEeecCC--CCC
Confidence 555666666554 33232222 3466666766432100 0000 00 000245677777765 999876432 257
Q ss_pred eEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 320 CIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 320 ~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+|+.++. +++|++++++++.++++++
T Consensus 408 ~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 436 (442)
T TIGR00709 408 VFRLLCPITIDQEECEEGISRFKQAVEEA 436 (442)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89998887 9999999999999999775
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-19 Score=158.64 Aligned_cols=209 Identities=11% Similarity=0.171 Sum_probs=149.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH----HHHHhcCCeEEEecccCCC
Q 018665 18 SFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISE 93 (352)
Q Consensus 18 ~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~----~~~~~~g~~v~~i~~~~~~ 93 (352)
+|++.++++.+ .+..+.++++++|+..++.+++++||+|+++.+.|.... ..+...|++++++++++..
T Consensus 68 ~lE~~la~leg-------~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~ 140 (384)
T PRK06434 68 AFEEKYAVLEN-------AEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLN 140 (384)
T ss_pred HHHHHHHHHhC-------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChh
Confidence 45599999874 567889999999999999999999999999988766655 5667899999999976323
Q ss_pred CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 94 ~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
.+.++ .+++++|++..|+||++.+.| +++|+++|+++ + +++|.+++. +....++. .+
T Consensus 141 ~~~l~--------~~~tklv~~e~~snpt~~v~D---i~~I~~la~~~-~--lvVD~t~~s----~~~~~pl~-----~g 197 (384)
T PRK06434 141 SLDFD--------PSNYDLIYAESITNPTLKVPD---IKNVSSFCHEN-D--VIVDATFAS----PYNQNPLD-----LG 197 (384)
T ss_pred heeec--------CCCeeEEEEEcCCCCCceeec---HHHHHHHHHHc-C--eEEECCCCC----cccCCchh-----cC
Confidence 22221 136899999999999999998 99999999999 8 466999642 11111221 24
Q ss_pred ceEEEecccccccccc-ceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 251 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g-~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
-++++.|.+|.++.+| .-.|.++. ++++.++++......+...+++....+...+ +.+..+.++.+++...
T Consensus 198 aDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL-------~tL~~R~~r~~~~a~~ 270 (384)
T PRK06434 198 ADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGL-------KTLGLRMEKHNKNGME 270 (384)
T ss_pred CCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCC-------CcHHHHHHHHHHHHHH
Confidence 4599999999996333 33566666 4556666665544444455655444444444 3456666777778888
Q ss_pred HHHHhcccCCce
Q 018665 252 LVKSFGELEGVK 263 (352)
Q Consensus 252 l~~~l~~~~g~~ 263 (352)
+.+.|++.|.+.
T Consensus 271 ~a~~L~~~p~v~ 282 (384)
T PRK06434 271 LARFLRDSKKIS 282 (384)
T ss_pred HHHHHHcCCCcc
Confidence 899998887663
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-19 Score=162.06 Aligned_cols=297 Identities=12% Similarity=0.148 Sum_probs=188.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHHH-HHhcCC------------eEEEecccCCCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPEM-ARIADA------------TPVILPTRISEN 94 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~~-~~~~g~------------~v~~i~~~~~~~ 94 (352)
.+.++++++|++|++.+++.... ...+|+....+|++.... +...+. .+..+|.+....
T Consensus 112 ~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 191 (460)
T PRK06541 112 LNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYR 191 (460)
T ss_pred cCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCcccc
Confidence 36899999999999999886421 136788888777766532 222111 122233221000
Q ss_pred ---cccC--------HHHHHhhcc----CCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 95 ---FLLD--------PKVLESKLT----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 95 ---~~~d--------~~~l~~~l~----~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
+..+ ++.+++.++ +++.+|++...++++|... |.+.+++|.++|+++ |+++|+||++.+++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~-g~llI~DEV~tGfGR~ 270 (460)
T PRK06541 192 APELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRY-DVLLVSDEVICAFGRL 270 (460)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcC
Confidence 1112 356777664 3455566655588899875 588999999999999 9999999999887655
Q ss_pred CCCccccccCCCCCCceEEEeccccccccccc-eeEEEEcChhHHHHHHhhh----hccccCCChHHHHHHHHHhcccCC
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKIQ----SQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~-~~g~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
|... ........++ +.+++|.+| +|+ ++|++++++++++.+.... ..++++.|++..+++.+.++.-
T Consensus 271 G~~~-a~~~~gv~PD----ivt~gK~l~-~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l-- 342 (460)
T PRK06541 271 GEMF-GCERFGYVPD----IITCAKGIT-SGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIF-- 342 (460)
T ss_pred chhh-hhhhcCCCCC----EEEeccccc-CCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHH--
Confidence 5421 1111111112 346899998 886 9999999999988875321 2346778889988888888751
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceec--CCCCceEEEeecCCccCCcccCCCCC--C--ChHHHHHHHHHccCE
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKI--E--NSESLCRYLLDKAQV 307 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~~gi 307 (352)
.-+.+.++++++.+++.+.|+++....++ ....|.++.+++.+....+. .+... . ....+.+.|+++ |+
T Consensus 343 ---~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-Gi 417 (460)
T PRK06541 343 ---EREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKE-TFTDDESERLLRGFLSPALFEA-GL 417 (460)
T ss_pred ---HhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCccccc-CCcchhhhhhHHHHHHHHHHhC-Ce
Confidence 11234566777777777777665222221 22345556666632111000 00000 0 012566777765 99
Q ss_pred EeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 308 ALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+.+.. . ....+|++++. +++|+++++++|.++++++..
T Consensus 418 ~~~~~~-~-g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06541 418 YCRADD-R-GDPVVQLAPPLISGQEEFDEIEQILRSVLTEAWA 458 (460)
T ss_pred EEEecC-C-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 997631 1 24689999995 999999999999999987543
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-19 Score=163.67 Aligned_cols=295 Identities=12% Similarity=0.123 Sum_probs=189.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHHH-HHhc---------C---CeEEEecccCC--
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPEM-ARIA---------D---ATPVILPTRIS-- 92 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~~-~~~~---------g---~~v~~i~~~~~-- 92 (352)
.+.++++++|++|++.+++.... ...+|+....+|++.... .... + ..+..++.+..
T Consensus 107 ~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (459)
T PRK05965 107 LNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYR 186 (459)
T ss_pred cCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccc
Confidence 46899999999999999986421 135788888888876532 2211 1 11223332211
Q ss_pred CCcccC--------HHHHHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 93 ENFLLD--------PKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 93 ~~~~~d--------~~~l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
..+..| ++.+++.+. +++.++++...+...|.. +|.+.+++|.++|++| |+++|.||++.+|+.+|
T Consensus 187 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~-gillI~DEV~tGfGRtG 265 (459)
T PRK05965 187 NPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACREL-GILFVADEVITGFGRTG 265 (459)
T ss_pred cccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhccCccCc
Confidence 001112 256676664 467788887777777765 5778999999999999 99999999999997776
Q ss_pred CCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHh-------hhhccccCCChHHHHHHHHHhccc
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~ 231 (352)
.. ........ ..-+.+++|.+| +| +++|.+++++++.+.+.. .....+++.|++..+++.+.++..
T Consensus 266 ~~-~a~~~~gv----~PDiv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l 339 (459)
T PRK05965 266 PL-FACEAEGV----VPDLMTVAKGLT-SGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLY 339 (459)
T ss_pred hh-hhHhhcCC----CCCeEEechhhc-cCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHH
Confidence 42 22222221 122666789998 88 499999999999887753 234557789999999999998752
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhcc---cCCceecCCCCceEEEeecCCccCCcccCCCC-CCChHHHHHHHHHccCE
Q 018665 232 YAGGEVVSKMVKAFRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQV 307 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi 307 (352)
. + +++.++.++.-+++.+.|++ .|.+.-+ ...|.++.+++........ .+.. ......+.+.++++ |+
T Consensus 340 ~--~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~v-rG~Gl~~gie~~~~~~~~~-~~~~~~~~~~~i~~~~~~~-Gl 411 (459)
T PRK05965 340 H--E---GGLLANGQKAGPRFAAGLDALRAHPLVGDV-RGRGLLGALELVADKATKT-PFDAALDPADRIFDRAYAN-GL 411 (459)
T ss_pred H--h---ccHHHHHHHHHHHHHHHHHhhccCCCEEEE-eecceEEEEEEeccccccC-CCCchhHHHHHHHHHHHhC-Ce
Confidence 1 1 12333444444555555544 3322222 2345556666632111000 0000 00145677777765 99
Q ss_pred EeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCCC
Q 018665 308 ALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
.+.+. ..+.+|+.++. +++|+++++++|.++++++...
T Consensus 412 l~~~~----g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~~ 451 (459)
T PRK05965 412 VFRAF----GDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLAD 451 (459)
T ss_pred EEEec----CCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 98763 24678998876 9999999999999999887543
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=163.55 Aligned_cols=282 Identities=12% Similarity=0.063 Sum_probs=187.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChH-HHHHhcC-------------CeEEEecccCCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYP-EMARIAD-------------ATPVILPTRISE 93 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~-~~~~~~g-------------~~v~~i~~~~~~ 93 (352)
-+.+++++++++|++.+++.... ...+|+.....|++.. .++...+ ..+..+|.+...
T Consensus 104 ~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 183 (429)
T PRK06173 104 LNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIK 183 (429)
T ss_pred cCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcc
Confidence 36899999999999999987431 2357888888887743 2221111 112233332110
Q ss_pred ---C-cccCHHHHHhhcc---CCeeEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 94 ---N-FLLDPKVLESKLT---EKSRLLILCSP-SNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 94 ---~-~~~d~~~l~~~l~---~~~~~i~i~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
. ...+++.|++.+. +++.+++++.. +...|.. +|++.++++.++|++| |+++|+||++.+++.+|... .
T Consensus 184 ~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~-g~llI~DEv~tG~GrtG~~~-a 261 (429)
T PRK06173 184 FGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY-GVLLIFDEIATGFGRTGKLF-A 261 (429)
T ss_pred cchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc-CCeEEecchhcCCCcCCcch-H
Confidence 0 0114666777774 46778888774 7777765 6788999999999999 99999999998876655421 1
Q ss_pred cccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHh-----hhhccccCCChHHHHHHHHHhcccCCChHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGLGYAGGEVV 238 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (352)
.......+| +.+++|.++ +| ++++.++.++++.+.+.. .....+++.+++..+++.++++.-. +
T Consensus 262 ~~~~gv~PD----iv~~gK~l~-gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~---~-- 331 (429)
T PRK06173 262 LEHAGVVPD----IMCIGKALT-GGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLL---E-- 331 (429)
T ss_pred HHhcCCCCC----EEEeehhhh-CCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHH---h--
Confidence 111211112 334899997 78 489999999999887753 1233456688999999998887521 1
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCceecC--CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 239 SKMVKAFRERRDFLVKSFGELEGVKMSE--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
+.+.++++++-+++.+.|+++.+...+. ...|.++.+.+.... ....+.+.|.++ |+.+.+.
T Consensus 332 ~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~-----------~~~~i~~~l~e~-Gi~v~~~---- 395 (429)
T PRK06173 332 SPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPV-----------NMATLQPRFVEH-GIWVRPF---- 395 (429)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcc-----------cHHHHHHHHHHC-CeEEEec----
Confidence 1234555556666666665431222221 134666667775421 457888888876 9999764
Q ss_pred CCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 317 DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 317 ~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.+|+.++. +++|+++++++|++++.++
T Consensus 396 -g~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 396 -GKLVYIMPPFIISPDELSQLTSGLLRVLKQE 426 (429)
T ss_pred -CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 2589999987 9999999999999999765
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-19 Score=159.77 Aligned_cols=295 Identities=20% Similarity=0.228 Sum_probs=201.8
Q ss_pred chhhHHHHHHHHhcCCCCCC-CcEEEeCChH-HHHHHHHHHhcC---CCCEEEecCCCCCChHHHHHhcCCeEEEecc-c
Q 018665 17 WSFVQQFVINLKENGLSYTP-DQILVSNGAK-QSILQAVLAVCS---PGDEVIIPAPFWVSYPEMARIADATPVILPT-R 90 (352)
Q Consensus 17 ~~~~~~ia~~~~~~~~~~~~-~~i~~~~g~~-~a~~~~~~~l~~---~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~-~ 90 (352)
.+|++.++++++ ++. +..++++++| .++..++.++.. +++.|+++..+|.+...++...|.+++.++. .
T Consensus 108 ~~~e~~~~~~~G-----~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~ 182 (444)
T TIGR03531 108 NKLVKDFLKLLG-----LRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVL 182 (444)
T ss_pred HHHHHHHHHHcC-----CCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeee
Confidence 345577777765 322 4688899999 577777777642 5789999999999999999999999999996 2
Q ss_pred CCCCcccCHHHHHhhccC---CeeEEEEcCCC-CCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccc
Q 018665 91 ISENFLLDPKVLESKLTE---KSRLLILCSPS-NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 91 ~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~-nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
+++++.+|++.|++++++ +..++++.+|+ ++.|...+ +++|+++|+++ |+++|+|++|+... ....
T Consensus 183 d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~dd---L~eIa~la~k~-gI~lIvDaAyg~~~------~~~~ 252 (444)
T TIGR03531 183 DGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDD---IEEIAKICANY-DIPHIVNNAYGLQS------NKYM 252 (444)
T ss_pred cCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhC---HHHHHHHHHHc-CCEEEEECcCcCcC------hhhh
Confidence 346788999999999975 45666666664 44455556 99999999999 99999999998521 1111
Q ss_pred cC---CCCCCc-eEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 167 SL---PGMWER-TLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 167 ~~---~~~~~~-~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
.. ....++ .+++.|++|.+..++. .|.++. ++++++.+...... ...+.+.+.+...++.. ..+.++++
T Consensus 253 ~~~~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g--~~~~s~~~~~~~~ll~~---G~~g~~~l 326 (444)
T TIGR03531 253 ELINKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPG--RASASPSLDVLITLLSL---GSKGYLEL 326 (444)
T ss_pred hhhhccccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccC--CCCChHHHHHHHHHHHh---CHHHHHHH
Confidence 11 000112 4778899999976664 444545 77888877654222 22445677777777765 46888999
Q ss_pred HHHHHHHHHHHHHHhccc---CCceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE----eccCC
Q 018665 242 VKAFRERRDFLVKSFGEL---EGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA----LVPGD 313 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~---~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~----i~~g~ 313 (352)
.++..++++++.+.|+++ .|..++.. ....-+.+.+....+ .+...+...|..+ +|. |.++.
T Consensus 327 i~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~---------~~~~~~g~~l~~~-~v~g~r~v~~~~ 396 (444)
T TIGR03531 327 LKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLKG---------KDPTMLGSMLYSR-RVTGPRVVTNGD 396 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecccccc---------cCHHHHHHHHHhC-CCCCceeecCCC
Confidence 999999999999988865 36666643 222323344332210 1677888888766 452 34444
Q ss_pred ----------CCCC------CCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 314 ----------AFGD------DTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 314 ----------~~~~------~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
.|+. ..|+-++.+. +.+|++.++++|.++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 397 SKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred ceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 1111 1355555544 889999999999875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-19 Score=148.09 Aligned_cols=314 Identities=15% Similarity=0.172 Sum_probs=229.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEE--EeCChHHHHHHHHHHh---cCCCCEEEecCCCCCChHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQIL--VSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYPEM 76 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~--~~~g~~~a~~~~~~~l---~~~~~~vl~~~~~~~~~~~~ 76 (352)
-|-|-.|.+.++ +..++.+- ....-++.+.++ -+-|||+|+.....-+ +. ...|.+..|+|..+..+
T Consensus 69 EYLpi~Gl~~F~------~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~i 141 (410)
T KOG1412|consen 69 EYLPILGLPTFT------KAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHHAI 141 (410)
T ss_pred hhccccCchhhh------hhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcc-cceeEecCCchhHHHHH
Confidence 466777788888 88888876 333334445543 3467788887666544 33 35699999999999999
Q ss_pred HHhcC-CeEEEecccCCCCcccCHHHHHhhccCCe--eEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 77 ARIAD-ATPVILPTRISENFLLDPKVLESKLTEKS--RLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 77 ~~~~g-~~v~~i~~~~~~~~~~d~~~l~~~l~~~~--~~i~-i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
++..| ..+..++....+...+|++.+...+...+ ..++ ..+.|||||.-++.|.++.|++..++. +...+.|-+|
T Consensus 142 f~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k-~lf~fFDiAY 220 (410)
T KOG1412|consen 142 FEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSK-NLFPFFDIAY 220 (410)
T ss_pred HHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhc-Cceeeeehhh
Confidence 99999 56777887766777799999998886433 2333 345599999999999999999999999 9999999999
Q ss_pred cccccCCC-Ccc-ccccCCCCCCceEEEeccccccccccceeEEEEc---ChhHHH----HHHhhhhccccCCChHHHHH
Q 018665 153 EHIIYAPA-THT-SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKHFVA----ACNKIQSQFTSGASSISQKA 223 (352)
Q Consensus 153 ~~~~~~~~-~~~-~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~ 223 (352)
.+|+-++- .+. .+.........+++.-||+|.+|+-+-|+|.+.. ++..+. ++....+.....|+..+...
T Consensus 221 QGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArI 300 (410)
T KOG1412|consen 221 QGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARI 300 (410)
T ss_pred cccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHH
Confidence 98865321 111 1122222234578999999999999999997652 444444 44444455556788888999
Q ss_pred HHHHhcccCCChHHHH---HHHHHHHHHHHHHHHHhccc--CC-ceecCCCCceEEEeecCCccCCcccCCCCCCChHHH
Q 018665 224 GVAALGLGYAGGEVVS---KMVKAFRERRDFLVKSFGEL--EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL 297 (352)
Q Consensus 224 ~~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~--~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (352)
+...|+.....++|.+ .+-.++++.|..|++.|..+ || |.-+..+.|+|-+-.+ ++ ..
T Consensus 301 V~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGL---------------tp-~q 364 (410)
T KOG1412|consen 301 VHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGL---------------TP-AQ 364 (410)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCC---------------CH-HH
Confidence 9999998655455544 34457788888899988876 55 6666778888766443 34 44
Q ss_pred HHHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHhhhCC
Q 018665 298 CRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 298 ~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+++|.+++.|++.+.+ ||+++. ....+|...++|.++++.+..
T Consensus 365 V~~li~~h~vyLl~~G--------RInisGLN~~NveyVAkAIde~Vr~~~~ 408 (410)
T KOG1412|consen 365 VDHLIENHKVYLLSDG--------RINISGLNMKNVEYVAKAIDETVRAIKS 408 (410)
T ss_pred HHHHHHhceEEEecCC--------cEeeeccccccHHHHHHHHHHHHHhhcc
Confidence 5778888889988766 999998 778899999999999887654
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-19 Score=157.40 Aligned_cols=277 Identities=15% Similarity=0.106 Sum_probs=194.1
Q ss_pred HHHHHHHHhcCCCCCCCcE--EEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQI--LVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i--~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ .+++++ ++|+|+|+++..++.... .++..|+++...|.+...+++..|..+..+|++. ++.
T Consensus 73 ~~ia~llg-----~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~--~g~ 145 (374)
T PLN03032 73 DWFARLWE-----LEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPTLP--SGE 145 (374)
T ss_pred HHHHHHhC-----CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEeeeCC--CCc
Confidence 55666665 556676 999999999998887653 2345899999999999999999999999999864 456
Q ss_pred cCHHHHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC-----EEEEecccccccccC--CCCccccc
Q 018665 97 LDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-----LLVLSDEIYEHIIYA--PATHTSFA 166 (352)
Q Consensus 97 ~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~~livD~~~~~~~~~--~~~~~~~~ 166 (352)
+|+++|++++++ ++.+++++..+|++|.+.| +++|+++|+++ | +++++|.+++++... .. .+.+
T Consensus 146 id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~-g~~~~~~~lHvDaA~gg~~~p~~~~-~~~~- 219 (374)
T PLN03032 146 IDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKEL-GYTEDRFYIHCDGALFGLMMPFVSR-APEV- 219 (374)
T ss_pred CcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHh-CCCCCCeeEEEEccchhhhhhccCC-Cccc-
Confidence 999999999975 4677888888999999999 99999999998 7 589999999864221 10 0001
Q ss_pred cCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcc-----ccCC--ChHHHHHHHHHhcccCCChHHHH
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF-----TSGA--SSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
... .+-+.+..|.||..| ...++|.++.+++.++.+.....+. +... +......+...+.. .+.+.+.
T Consensus 220 ~~~--~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~--~G~~g~~ 294 (374)
T PLN03032 220 TFR--KPIGSVSVSGHKFLG-CPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRR--KGYRGIK 294 (374)
T ss_pred CCC--cCCcEEEECcccccC-CCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHH--hCHHHHH
Confidence 111 124467889999987 4567899998887776553221111 1222 22333344444433 2467888
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
+..++.-++.+++.+.|++. ++.+...+..+.+.+..|. .+ .+.+ |..+.+ .+.
T Consensus 295 ~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~~--------------~~----~~~~--~w~l~~-----~~~ 348 (374)
T PLN03032 295 RDVQHCMRNAHYLKDRLTEA-GLTCRLNELSSTVVFERPM--------------DE----AFIK--KWQLAC-----EGD 348 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcEEECCCceEEEEcCCC--------------cH----hHhh--eeeecc-----cCC
Confidence 99999999999999999987 7776544444445555442 11 1232 455543 245
Q ss_pred eEEEEeec--CHHHHHHHHHHHHH
Q 018665 320 CIRISYAA--SLTTLQAAVERIKK 341 (352)
Q Consensus 320 ~iRi~~~~--~~~~l~~~~~~l~~ 341 (352)
++|+++.. +.+.++++++.|++
T Consensus 349 ~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 349 IAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhc
Confidence 89998876 77889999988865
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-18 Score=160.35 Aligned_cols=292 Identities=11% Similarity=0.054 Sum_probs=184.5
Q ss_pred CcEEEeCChHHHHHHHHHHhc------C--CCCEEEecCCCCCChH-HHHHhcCCe------------EEEecccCCCCc
Q 018665 37 DQILVSNGAKQSILQAVLAVC------S--PGDEVIIPAPFWVSYP-EMARIADAT------------PVILPTRISENF 95 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~------~--~~~~vl~~~~~~~~~~-~~~~~~g~~------------v~~i~~~~~~~~ 95 (352)
+.++++++|++|++.+++... . ...+|+..+..|++.. ..+...|.. +..++.+....+
T Consensus 152 ~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~ 231 (504)
T PLN02760 152 GKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRF 231 (504)
T ss_pred CEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCccccc
Confidence 579999999999999998763 1 1357888877777654 333322221 112222110000
Q ss_pred -----------ccCHHHHHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 96 -----------LLDPKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 96 -----------~~d~~~l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
....+.+++.+. +++.+|++.......|.. .|.+.+++|.++|++| |+++|+||++.+|+..|
T Consensus 232 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~-g~lLI~DEV~TGfGRtG 310 (504)
T PLN02760 232 HLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKY-DILFIADEVICAFGRLG 310 (504)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEecchhhCCcccc
Confidence 001234555552 356777777777777865 5678999999999999 99999999999887776
Q ss_pred CCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh-------hhccccCCChHHHHHHHHHhccc
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~ 231 (352)
.. .......- ..-+.+++|.+| +| +++|.+++++++++.+... .+.++++.|++..+++.+.|+..
T Consensus 311 ~~-~a~e~~gv----~PDivtlgK~lg-gG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i 384 (504)
T PLN02760 311 TM-FGCDKYNI----KPDLVSLAKALS-SAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIY 384 (504)
T ss_pred hh-hHHHhcCC----CCcEEEeccccc-CCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHH
Confidence 52 22222221 123677899998 66 4899999999998887531 34567788999999999999752
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE
Q 018665 232 YAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 308 (352)
.. +++.++.+++-+++.+.|+++ +.+.-+. ..|.++.+++.+........-........+.+.++++ |+.
T Consensus 385 ~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vr-G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gvl 457 (504)
T PLN02760 385 KE-----RNIPEHVNKIAPRFQDGIKAFSGSPIIGEIR-GTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKR-GML 457 (504)
T ss_pred Hh-----CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEE-eCceEEEEEEecCCcccccccchhHHHHHHHHHHHhC-CcE
Confidence 11 134445555555555555443 2222222 3355566666332110000000000144677777765 999
Q ss_pred eccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 309 LVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 309 i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
+.+. ...+|++++. +++||++++++++++++++.
T Consensus 458 ~~~~-----g~~lrl~Ppl~it~eeid~~~~~l~~al~~~~ 493 (504)
T PLN02760 458 VRVA-----GDNIMMSPPLIITPEEVDELISIYGKALKATE 493 (504)
T ss_pred EEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8763 2578999884 99999999999999998763
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-18 Score=157.98 Aligned_cols=288 Identities=13% Similarity=0.068 Sum_probs=186.0
Q ss_pred CcEEEeCChHHHHHHHHHHhc------C--CCCEEEecCCCCCChHH-HHHhcC------------CeEEEecccCCCCc
Q 018665 37 DQILVSNGAKQSILQAVLAVC------S--PGDEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRISENF 95 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~------~--~~~~vl~~~~~~~~~~~-~~~~~g------------~~v~~i~~~~~~~~ 95 (352)
+.++++++|++|++.+++... . ...+|+....+|++... ++...| ..+..++.+...+.
T Consensus 115 ~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 194 (453)
T PRK06943 115 GHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGA 194 (453)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCcccc
Confidence 589999999999999998752 1 23678888888887552 222121 11223333321110
Q ss_pred ----------ccCHHHHHhhcc---CCeeEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 96 ----------LLDPKVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 96 ----------~~d~~~l~~~l~---~~~~~i~i~~-p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
.-+++.+++.++ +++.+|++.. .+...|. ..|.+.++++.++|++| |+++|.||++.+++..|.
T Consensus 195 ~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~-gillI~DEV~TG~GRtG~ 273 (453)
T PRK06943 195 RPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRY-GVHLIADEIAVGCGRTGT 273 (453)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHc-CCEEEeechhhCCCCCcc
Confidence 013466777664 4777888877 3666676 46788999999999999 999999999999877664
Q ss_pred CccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHh------hhhccccCCChHHHHHHHHHhcccCC
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK------IQSQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
. ......... .-+.+++|.++ +| +++|.+++++++.+.+.. .....+++.|++..+++.+.|+.-..
T Consensus 274 ~-fa~~~~gv~----PDivt~gKgl~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~ 347 (453)
T PRK06943 274 F-FACEQAGVW----PDFLCLSKGIS-GGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE 347 (453)
T ss_pred h-hHHHhCCCC----CCeEeeehhhc-cCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 2 222222211 22556689998 88 599999999999887753 12445678899999999999886221
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
++.+++..+.-+..++.+.+. .+.+++.-+. ..|.++.+++....... ......+.+.+.++ |+.+.+.
T Consensus 348 -~~l~~~~~~~G~~l~~~L~~l-~~~~~v~~vr-G~Gl~~gvel~~~~~~~------~~~~~~i~~~~~~~-Gll~~~~- 416 (453)
T PRK06943 348 -DDVLARNARKSARLRAALAPL-AAHPQVRHLR-QRGTIFAFDVALDGDAA------RTFSRRFFEAALER-ELLLRPI- 416 (453)
T ss_pred -cCHHHHHHHHHHHHHHHHHHH-hcCCCEEeEe-ccccEEEEEEccCCCcc------hHHHHHHHHHHHHC-CcEEEec-
Confidence 222333333333333333332 2344554333 34555666664210000 00245677887765 8998763
Q ss_pred CCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 314 AFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 314 ~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.+|++++. +++|+++++++|.++++++
T Consensus 417 ----g~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 417 ----GTTVYLMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred ----CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 2469999765 9999999999999999876
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-19 Score=157.73 Aligned_cols=264 Identities=13% Similarity=0.110 Sum_probs=182.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHh-c-------CCe-----EEEecccCCCCcccCHH
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-A-------DAT-----PVILPTRISENFLLDPK 100 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~-~-------g~~-----v~~i~~~~~~~~~~d~~ 100 (352)
.+.+++++++++|++.+++... ...++|+....+|++....... . +.. +..++. .|++
T Consensus 81 ~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-------~d~~ 153 (364)
T PRK04013 81 YEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-------NDVE 153 (364)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-------CCHH
Confidence 4689999999999999998753 2337899888888876533322 1 111 122221 2678
Q ss_pred HHHhhccCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEe
Q 018665 101 VLESKLTEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 179 (352)
Q Consensus 101 ~l~~~l~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (352)
.+++.+.+++++|++...+...|.. .|.+.++++.++|+++ |+++|+||++.++ ..|.. .......-. .-+.
T Consensus 154 ~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~-gillI~DEv~tG~-RtG~~-~a~~~~gv~----PDiv 226 (364)
T PRK04013 154 AAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDV-GALLIADEVQSGL-RTGKF-LAIEHYKVE----PDIV 226 (364)
T ss_pred HHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhcC-CCCch-hHHHhcCCC----CCEE
Confidence 8999888888999888887766764 5677999999999999 9999999999987 66642 222222111 2256
Q ss_pred ccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc
Q 018665 180 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 259 (352)
Q Consensus 180 s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 259 (352)
+++|.+| +|+++|.++.++++. .....++++.|+...+++.+.++.-.. ++..++..+ . +. .+..
T Consensus 227 ~~gK~lg-gG~P~~a~~~~~~~~----~~~~~~T~~gnp~~~aaa~a~l~~i~~-~~l~~~~~~----~---l~-~l~~- 291 (364)
T PRK04013 227 TMGKGIG-NGVPVSLTLTNFDVE----RGKHGSTFGGNPLACKAVAVTLRILRR-ERLVEKAGE----K---FI-EIKG- 291 (364)
T ss_pred Eeccccc-CCceeEEEEeccccc----CCCcCCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHH----H---HH-Hhcc-
Confidence 6789998 789999999887752 223556788999999999999886221 222222222 1 22 2222
Q ss_pred CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHH
Q 018665 260 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVE 337 (352)
Q Consensus 260 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~ 337 (352)
+.+.-+. ..|.++-+++.+ ....+.+.++++ |+.+.+. ..+.+|+.++. +++|++++++
T Consensus 292 ~~v~~vR-G~Gl~~gve~~~-------------~~~~i~~~~~~~-Gll~~~~----g~~vlr~~Ppl~it~~~i~~~~~ 352 (364)
T PRK04013 292 ERVVTTR-GRGLMIGIVLKK-------------PVGKYVEELQNR-GYLVHTA----GQRVIRLLPPLIISKDTMEEAKS 352 (364)
T ss_pred Ccceeee-eCcEEEEEEeCC-------------cHHHHHHHHHhC-CcEEeeC----CCCEEEEeCCcccCHHHHHHHHH
Confidence 2222222 346667777743 356788888876 8988663 24789999987 9999999999
Q ss_pred HHHHHHhhhC
Q 018665 338 RIKKGLLTLR 347 (352)
Q Consensus 338 ~l~~~~~~~~ 347 (352)
+|++++.++.
T Consensus 353 ~l~~~l~~~~ 362 (364)
T PRK04013 353 AIEGVINDIL 362 (364)
T ss_pred HHHHHHHHHh
Confidence 9999998754
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-18 Score=155.60 Aligned_cols=283 Identities=17% Similarity=0.225 Sum_probs=187.2
Q ss_pred hHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh---------cCCCCEEEecCCCCCChHHHHHhcCCeEEEeccc
Q 018665 20 VQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV---------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 90 (352)
Q Consensus 20 ~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---------~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~ 90 (352)
++.+|++++ .+++++++|+++++..++.++ +++||+|+++.++|..+...+...|.+++.++++
T Consensus 69 e~~lA~~~g-------~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd 141 (438)
T PRK15407 69 EKKLAEFLG-------VRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVE 141 (438)
T ss_pred HHHHHHHhC-------CCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 399999985 357999999999999988876 3789999999999999999999999999999987
Q ss_pred CCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc-cCCCCccccccCC
Q 018665 91 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLP 169 (352)
Q Consensus 91 ~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~-~~~~~~~~~~~~~ 169 (352)
. .++.+|++.+++.+++++++|+++++ .|.+.+ +++|.++|+++ |+++|+|++++... +.|.. .....
T Consensus 142 ~-~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~d---l~~I~~la~~~-gi~vIeDaa~a~G~~~~g~~---~G~~g 210 (438)
T PRK15407 142 L-PTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFD---LAAVKAFCDKH-NLWLIEDNCDALGSTYDGRM---TGTFG 210 (438)
T ss_pred C-CcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhh---HHHHHHHHHHC-CCEEEEECccchhhhcCCee---eeccC
Confidence 4 45678999999999889999998775 456566 89999999999 99999999998532 22221 11111
Q ss_pred CCCCceEEEecc--ccccccccceeEEEEcChh-HHHHHHhhhhcc----------------------------------
Q 018665 170 GMWERTLTVNGF--SKAFAMTGWRLGYIAGPKH-FVAACNKIQSQF---------------------------------- 212 (352)
Q Consensus 170 ~~~~~~i~~~s~--sK~~g~~g~~~g~l~~~~~-~~~~~~~~~~~~---------------------------------- 212 (352)
++.+.|| +|.+. .|- .|+++++.+ +.+.++......
T Consensus 211 -----d~~~fSf~~~k~~~-~ge-GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (438)
T PRK15407 211 -----DIATLSFYPAHHIT-MGE-GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTY 283 (438)
T ss_pred -----ceEEEeCCCCCCcc-ccC-ceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccc
Confidence 2556666 46675 443 488887654 444443322110
Q ss_pred -----ccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCC-ceecC-CCC---ceE-EEeecCCcc
Q 018665 213 -----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG-VKMSE-PQG---AFY-LFIDFSTYY 281 (352)
Q Consensus 213 -----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g-~~~~~-~~~---g~~-~~~~~~~~~ 281 (352)
++.++.+..+.+... -+.+++..++-+++.+++.+.|..+++ +.... +.+ .++ +.+.+++..
T Consensus 284 ~~~G~n~rmsel~AAig~~q-------L~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 356 (438)
T PRK15407 284 SHLGYNLKITDMQAAIGLAQ-------LEKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDA 356 (438)
T ss_pred cccccccCccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcC
Confidence 011112112111111 344566667777778888888887764 22221 111 222 223443210
Q ss_pred CCcccCCCCCCChHHHHHHHHHccCEEeccCCC--------C-----C----C-------CCeEEEEeec--CHHHHHHH
Q 018665 282 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDA--------F-----G----D-------DTCIRISYAA--SLTTLQAA 335 (352)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~--------~-----~----~-------~~~iRi~~~~--~~~~l~~~ 335 (352)
+ .+.+++.+.|.++ ||.+.+... | . . ...+-+.+.. +++++++.
T Consensus 357 ~---------~~Rd~l~~~L~~~-GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i 426 (438)
T PRK15407 357 G---------FTRVELVKYLEEN-KIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYV 426 (438)
T ss_pred C---------CCHHHHHHHHHHC-CCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHH
Confidence 0 1578899998876 887643211 0 0 0 1235555544 88999999
Q ss_pred HHHHHHHHh
Q 018665 336 VERIKKGLL 344 (352)
Q Consensus 336 ~~~l~~~~~ 344 (352)
++.|+++++
T Consensus 427 ~~~i~~~~~ 435 (438)
T PRK15407 427 IEKIEEFFG 435 (438)
T ss_pred HHHHHHHHh
Confidence 999999875
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=158.67 Aligned_cols=290 Identities=16% Similarity=0.164 Sum_probs=184.1
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHH-HHHhcC-------------CeEEEecccCCCC--cc--
Q 018665 37 DQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPE-MARIAD-------------ATPVILPTRISEN--FL-- 96 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~-~~~~~g-------------~~v~~i~~~~~~~--~~-- 96 (352)
+.+++++||++|++.+++... ....+|+.....|++... ++...+ ..+..+|.+.... +.
T Consensus 114 ~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 193 (457)
T PRK05639 114 PKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGIN 193 (457)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCcccccccccc
Confidence 689999999999999998753 234578888887777553 222111 1233444432110 00
Q ss_pred --cCH--------HHHHhhc------cCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 97 --LDP--------KVLESKL------TEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 97 --~d~--------~~l~~~l------~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.+. +.+++.+ .+++.++++...+...|.. +|.+.+++|.++|++| |+++|+||++.++..+|
T Consensus 194 ~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~-g~llI~DEv~tG~GrtG 272 (457)
T PRK05639 194 GYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEH-GILLVMDEVQTGIGRTG 272 (457)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhccCcCc
Confidence 022 2344443 2467788887777777764 5688999999999999 99999999999886666
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
... ......-.+| +.+++|.+| +|.++|++++++++++. ......++++.++...+++.+.++.-. -+
T Consensus 273 ~~~-a~~~~gv~PD----iv~~gK~l~-gG~pi~av~~~~~i~~~-~~~~~~~T~~g~p~~~aaa~a~l~~l~-----~~ 340 (457)
T PRK05639 273 KWF-ASEWFEVKPD----LIIFGKGVA-SGMGLSGVIGRKELMDL-TSGSALLTPAANPVISAAAEATLEIIE-----EE 340 (457)
T ss_pred hHH-HHHhcCCCCC----EEEechhhc-CCCcceeEEehHHHHhh-cCCCcccCCCcCHHHHHHHHHHHHHHH-----Hc
Confidence 421 1111121112 334899998 78999999999999883 222234567789999988888887521 12
Q ss_pred HHHHHHHHHHHHHHHHhccc-C--CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGEL-E--GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~-~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
++.++.+++-+++.+.|+++ . ++.......|.++.+.+-..... . .......+.+.++++ |+.+.+...
T Consensus 341 ~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~--~---~~~~~~~~~~~~~~~-Gv~~~~~g~-- 412 (457)
T PRK05639 341 NLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGK--P---DPELTGKICWRAFEL-GLILPSYGM-- 412 (457)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCC--C---CHHHHHHHHHHHHhC-CeEEeecCC--
Confidence 33344444555555555442 1 22221223455566655321100 0 000245677888876 999866421
Q ss_pred CCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 317 DDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 317 ~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
..+.+|+.++. +++|+++++++|+++++++.
T Consensus 413 ~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 413 FGNVIRITPPLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 25789999987 99999999999999998764
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-18 Score=151.79 Aligned_cols=311 Identities=13% Similarity=0.115 Sum_probs=209.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH-HHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~-~~~~g 81 (352)
-|+.++.+.+++ +.++++++ .+.++.++++|.|++.+....+++||.| +..+|...... ....|
T Consensus 73 ~Yagd~s~~~LE------~~vAe~lG-------~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~G 137 (460)
T PRK13237 73 AYAGSRNFYHLE------ETVQEYYG-------FKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNG 137 (460)
T ss_pred hhcCCCcHHHHH------HHHHHHHC-------CCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCC
Confidence 377788888888 99999985 5679999999999998766678889864 55545544433 67778
Q ss_pred CeEEEeccc--------CCCCcccCHHHHHhhccC----CeeEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEe
Q 018665 82 ATPVILPTR--------ISENFLLDPKVLESKLTE----KSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLS 148 (352)
Q Consensus 82 ~~v~~i~~~--------~~~~~~~d~~~l~~~l~~----~~~~i~i~~p~npt-G~~~~~~~l~~l~~~~~~~~~~~liv 148 (352)
....-+..+ ...++.+|+++|++++++ ++.++.+..++|.. |++.|.+.++++.++|+++ |+.+|.
T Consensus 138 a~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~-Gl~Vi~ 216 (460)
T PRK13237 138 GIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKH-GIKVFF 216 (460)
T ss_pred cEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHc-CCEEEE
Confidence 754433211 124567999999999974 33456677777766 7999999999999999999 999999
Q ss_pred ccccccccc-------CCCCcccccc----CCCCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhcc----
Q 018665 149 DEIYEHIIY-------APATHTSFAS----LPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF---- 212 (352)
Q Consensus 149 D~~~~~~~~-------~~~~~~~~~~----~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~---- 212 (352)
|.++..... .+....+... +. ..-+.++.|++|.++.+ . .|++++ +++++++++.....+
T Consensus 217 DaAra~gna~fI~~re~~y~~~~i~ei~~e~~--s~aD~~t~S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~~~~eG~~ 292 (460)
T PRK13237 217 DATRCVENAYFIKEREEGYQDKSIKEIVHEMF--SYADGCTMSGKKDCLVN-I-GGFLAMNDEELFDEAKELVVVYEGMP 292 (460)
T ss_pred ECcchhcChhhhcccccccCCCcHhHHhhhcc--CcCcEEEEeCCCCCCCC-C-ceEEEECCHHHHHHHHHhccccCCCc
Confidence 999874210 1111222211 11 12337788899998633 2 366664 667888887663222
Q ss_pred -ccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeec----CCccCCcccC
Q 018665 213 -TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF----STYYGSEAEG 287 (352)
Q Consensus 213 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~----~~~~~~~~~~ 287 (352)
..+.+.-.+.+++..+.... ..+++....+ ..++|.+.|.+. |+.++.|.+|.-++++. |......
T Consensus 293 tygg~~grd~~alAvgl~E~~-~~~y~~~ri~----~~~~l~~~L~~~-Gvpv~~p~ggH~v~vda~~~lph~~~~~--- 363 (460)
T PRK13237 293 SYGGMAGRDMEAMAIGIEESV-QYEYIEHRVG----QVRYLGEKLLAA-GVPIVEPVGGHAVFLDARRFLPHLPQDQ--- 363 (460)
T ss_pred CCCChhhhHHHHHHhHHHhhc-hHHHHHHHHH----HHHHHHHHHHHC-CCceecCCCceEEEEEhHHhCCCCCccc---
Confidence 22344445556665555422 1344444443 445788888776 99999999998888874 4333222
Q ss_pred CCCCCChHHHHHHHHHccCEEec-cCCCC-C-C----------CCeEEEEeec---CHHHHHHHHHHHHHHHhhh
Q 018665 288 FGKIENSESLCRYLLDKAQVALV-PGDAF-G-D----------DTCIRISYAA---SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 288 ~~~~~~~~~~~~~l~~~~gi~i~-~g~~~-~-~----------~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~ 346 (352)
+ .+..++.+|..+.||--. -|+.. + . -..+|+.++. |.+.++...+.|..+.+.-
T Consensus 364 ~----p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~ 434 (460)
T PRK13237 364 F----PAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHR 434 (460)
T ss_pred C----hHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhH
Confidence 2 678899999988887432 12211 1 0 1479999987 8899999999998887653
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-18 Score=140.22 Aligned_cols=284 Identities=17% Similarity=0.178 Sum_probs=217.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcCCeEEEecccCCCCcccCHHHHHhhcc-CCee
Q 018665 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLT-EKSR 111 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~-~~~~ 111 (352)
++....+..+++.+++.++-.+..+||+|++....-++.+ +.+++.|++|+.++.+ -+..+.++++.+.+. .+++
T Consensus 67 n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~--~G~~~~le~i~~~lsqh~p~ 144 (385)
T KOG2862|consen 67 NAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEAD--IGQAVPLEEITEKLSQHKPK 144 (385)
T ss_pred CCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecC--cccCccHHHHHHHHHhcCCc
Confidence 3456788888999999999999999999998876655544 7899999999999876 444589999999996 4889
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccce
Q 018665 112 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 191 (352)
Q Consensus 112 ~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~ 191 (352)
++++++..+.||...|. ++..-++|++| +.+++||.+.+-. . ..+ .+ ++++.++......|++| +..+
T Consensus 145 ~vfv~hgdsSTgV~q~~--~~~~g~lc~k~-~~lllVD~VaSlg----g--t~F-~m-DewgVDvaytgSQKaL~-aP~G 212 (385)
T KOG2862|consen 145 AVFVTHGDSSTGVLQDL--LAISGELCHKH-EALLLVDTVASLG----G--TEF-EM-DEWGVDVAYTGSQKALG-APAG 212 (385)
T ss_pred eEEEEecCccccccchH--HHHHHHHhhcC-CeEEEEechhhcC----C--ccc-ee-hhhcccEEEecchhhcC-CCCC
Confidence 99999999999999883 45566788899 9999999998742 1 111 12 23566677777889998 4446
Q ss_pred eEEEEcChhHHHHHHhhhh-----------------------ccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Q 018665 192 LGYIAGPKHFVAACNKIQS-----------------------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248 (352)
Q Consensus 192 ~g~l~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 248 (352)
++.+..++...++++.... .+..+++....+.+.++|... .++.+++..++.++.
T Consensus 213 LsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I--~eeGL~~~~~rH~e~ 290 (385)
T KOG2862|consen 213 LSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALI--AEEGLENSWRRHREM 290 (385)
T ss_pred cceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 7888888887777653221 223467777888888888763 478899999999999
Q ss_pred HHHHHHHhcccCCceecC----CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEE
Q 018665 249 RDFLVKSFGELEGVKMSE----PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324 (352)
Q Consensus 249 ~~~l~~~l~~~~g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~ 324 (352)
.+.++..|++. |++... ........+..|..+ |..+++.++..++++.+.-|-....+..+||.
T Consensus 291 s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~vp~gv-----------Dw~dVv~~~~~~~~vei~gglg~~~gKv~RIG 358 (385)
T KOG2862|consen 291 SKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKVPYGV-----------DWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIG 358 (385)
T ss_pred HHHHHHHHHHh-CccceecChhhccCcceeeecCCCC-----------CHHHHHHHHHHhcCEEeccccCCCcccEEEEE
Confidence 99999999987 766652 222333445666554 89999999998888887555444456799998
Q ss_pred eec---CHHHHHHHHHHHHHHHhhh
Q 018665 325 YAA---SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 325 ~~~---~~~~l~~~~~~l~~~~~~~ 346 (352)
+.. +-|.++..++.|+.++.+.
T Consensus 359 l~gcna~~e~i~~v~~ll~~alq~~ 383 (385)
T KOG2862|consen 359 LLGCNANVEYIDNVVELLKLALQRK 383 (385)
T ss_pred EeeccCCcHHHHHHHHHHHHHHhhc
Confidence 754 6699999999999998764
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-18 Score=155.62 Aligned_cols=286 Identities=15% Similarity=0.155 Sum_probs=183.8
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHH-HhcCC-------------eEEEecccCCCC--cc--
Q 018665 37 DQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMA-RIADA-------------TPVILPTRISEN--FL-- 96 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~-~~~g~-------------~v~~i~~~~~~~--~~-- 96 (352)
+.++++++|++|++.+++... ...++|+.....|++....+ ...+. .+..++.+.... +.
T Consensus 116 ~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (441)
T PRK05769 116 KKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIE 195 (441)
T ss_pred CEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCC
Confidence 689999999999999998642 23467888888887766432 22211 123333321000 00
Q ss_pred -------cCHHHHHh-hc-----cCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 97 -------LDPKVLES-KL-----TEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 97 -------~d~~~l~~-~l-----~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
.+++.+++ .+ .+++.+|++...+...|.. .|.+++++|.++|+++ |+++|+||++.++...|..
T Consensus 196 ~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~tG~gr~G~~- 273 (441)
T PRK05769 196 NPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKY-GILLIDDEVQTGMGRTGKM- 273 (441)
T ss_pred chHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccce-
Confidence 01233555 22 2456777777767777875 4677899999999999 9999999999987666642
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
......... ++ +.+++|.+| +|+++|++++++++++... .....+++.+++.++++.++++. -+. ++.
T Consensus 274 ~a~~~~gv~-pD---ivt~~K~l~-~G~p~gav~~~~~i~~~~~-~~~~~T~~g~p~~~aaa~a~L~~----l~~--~~~ 341 (441)
T PRK05769 274 FAIEHFGVE-PD---IITLAKAIA-GGLPLGAVIGRAELMFLPP-GSHANTFGGNPVAAAAALATLEE----LEE--GLL 341 (441)
T ss_pred ehhhccCCC-CC---EEEEccccc-CCcccEEEEEehhhhhcCC-CCCCCCCCcCHHHHHHHHHHHHH----HHH--HHH
Confidence 122222211 22 235889998 7899999999998875432 23445667899999999999875 222 556
Q ss_pred HHHHHHHHHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 243 KAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
++.+++-+++++.|+++. ++.......|.++.+.+.+... ... ......+.+.++++ |+.+.+. ...
T Consensus 342 ~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~-~~~----~~~~~~~~~~~~~~-Gil~~~~----~~~ 411 (441)
T PRK05769 342 ENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRK-EPD----PKLRDKVLYEAFKR-GLLLLGA----GKS 411 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCc-ccc----HHHHHHHHHHHHhC-CcEEecC----CCC
Confidence 666666677777665431 2211112335566666632110 000 00245677777765 8998763 246
Q ss_pred eEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 320 CIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 320 ~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+|++++. +++|+++++++++++++++
T Consensus 412 ~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 412 AIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 89999887 9999999999999998764
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-18 Score=148.93 Aligned_cols=209 Identities=15% Similarity=0.125 Sum_probs=161.4
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH----hcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~----~~g~~v~~i~~~~~~~~~ 96 (352)
+.+++.- ...+.+++++|..|+..++..++..|++|+..+.+|.++...++ .+|.+...+++.
T Consensus 84 ~~iaal~-------ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~------ 150 (409)
T KOG0053|consen 84 SGIAALE-------GAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD------ 150 (409)
T ss_pred HHHHHHh-------CCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh------
Confidence 7777775 46679999999999999999999999999999999999887665 568888777653
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
+++.+++++++++++|++..|.||+..+.+ +++|+++|+++ |+++|||++++.... ..... .+-+|
T Consensus 151 -~~~~~~~~i~~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~-g~~vvVDnTf~~p~~-----~~pL~----lGADI 216 (409)
T KOG0053|consen 151 -DLKKILKAIKENTKAVFLESPSNPLLKVPD---IEKLARLAHKY-GFLVVVDNTFGSPYN-----QDPLP----LGADI 216 (409)
T ss_pred -hHHHHHHhhccCceEEEEECCCCCcccccc---HHHHHHHHhhC-CCEEEEeCCcCcccc-----cChhh----cCCCE
Confidence 788899999999999999999999999999 99999999999 999999999875311 11111 24459
Q ss_pred EEeccccccccc-cceeEEEEcC-hhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMT-GWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 177 ~~~s~sK~~g~~-g~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
++.|.+|.+|.. ..=.|.++.+ +++..+++..+....+.++++......+-+.+ +.-+.++..++...+.+
T Consensus 217 V~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglkt-------l~lRi~~~~ena~~~A~ 289 (409)
T KOG0053|consen 217 VVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKT-------LHLRINKHSENALKIAL 289 (409)
T ss_pred EEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcch-------hhhhHHHHHHHHHHHHH
Confidence 999999999523 3446677775 88999999888877788888887776666654 22233344445555666
Q ss_pred HhcccCCce
Q 018665 255 SFGELEGVK 263 (352)
Q Consensus 255 ~l~~~~g~~ 263 (352)
.|+..|.++
T Consensus 290 ~Le~~~~v~ 298 (409)
T KOG0053|consen 290 LLEAHPKVK 298 (409)
T ss_pred HhhhCCcee
Confidence 666555554
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=153.39 Aligned_cols=284 Identities=18% Similarity=0.231 Sum_probs=181.9
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCC------CCEEEecCCCCCChHHHHHhcCCeEEEecccCCC
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSP------GDEVIIPAPFWVSYPEMARIADATPVILPTRISE 93 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~------~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~ 93 (352)
+.|.+++. .-+...+...|++++|+|+.++.++.+|... .-+|+...|.|..|......+......+.=
T Consensus 50 ~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~G---- 125 (363)
T PF04864_consen 50 RQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWAG---- 125 (363)
T ss_dssp HHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEEE----
T ss_pred HHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCccccc----
Confidence 99999998 6666667789999999999999999998432 247999999999998766544433222221
Q ss_pred CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 94 ~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
|.......-...+-.=++++||||.|.+ .+.++ +.. +..+|-|-+|..-.|+ .+....+
T Consensus 126 ----da~~~~~~~~~~~~IElVTSPNNPDG~l-----r~~V~---~g~-~~k~I~D~AYYWPhyT--------pI~~~aD 184 (363)
T PF04864_consen 126 ----DASNFKNSDNPSPYIELVTSPNNPDGQL-----REAVL---NGS-SGKVIHDLAYYWPHYT--------PITAPAD 184 (363)
T ss_dssp ----ECCCGTT-S-CCGEEEEEESS-TTT-----------SS---TTT-EEEEEEE-TT-STTTS-----------S-B-
T ss_pred ----cHHhhccCCCCCCeEEEEeCCCCCcccc-----cchhc---CCC-Ccceeeeeeeeccccc--------ccCCCCC
Confidence 2222211111234455889999999988 33444 344 7888999998763332 2222235
Q ss_pred ceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhccc---CCC----hHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLG---YAG----GEVVSKMVKAF 245 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~~~~~~~~~~~ 245 (352)
.++.+.|+||..|.+|.|+||.+. ++++.+++..+....+.+.|.-.|.-+.+.|..- ... .+.+.--.+.+
T Consensus 185 ~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M 264 (363)
T PF04864_consen 185 HDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTM 264 (363)
T ss_dssp -SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHH
T ss_pred CceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHH
Confidence 569999999999999999999986 5567778888877888899999998888877651 110 13566667788
Q ss_pred HHHHHHHHHHhcccCCceec--C-----------CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 246 RERRDFLVKSFGELEGVKMS--E-----------PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 246 ~~~~~~l~~~l~~~~g~~~~--~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
++|++.|.+.+.+-..+... . ....-|.|++|... ...+..+.|. +.||..+.|
T Consensus 265 ~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e------------ed~DC~~~l~-~~~I~tr~G 331 (363)
T PF04864_consen 265 RERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE------------EDEDCYAVLR-EAKIITRSG 331 (363)
T ss_dssp HHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSC------------GGSSHHHHHH-CTTEEEEEG
T ss_pred HHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCc------------ccccHHHHHH-hCCcccCCC
Confidence 99999999998864222221 1 12344599999753 2344544444 679999999
Q ss_pred CCCCC-CCeEEEEeecCHHHHHHHHHHHHHH
Q 018665 313 DAFGD-DTCIRISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 313 ~~~~~-~~~iRi~~~~~~~~l~~~~~~l~~~ 342 (352)
..|+. +.++|||+-.++++++.++++|.+.
T Consensus 332 ~~fga~~ryVRlSml~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 332 VLFGADSRYVRLSMLKRDDDFDQLLERLSKL 362 (363)
T ss_dssp GGGTS-TTEEEEESSS-HHHHHHHHHHHHCC
T ss_pred CccCCCCCeEEEeccCCHHHHHHHHHHHHhh
Confidence 99974 6799999999999999999999764
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-18 Score=159.30 Aligned_cols=297 Identities=12% Similarity=0.085 Sum_probs=179.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-------CCC-CEEEecCCCCCChH-HHHHhcCCe-----------EEEecccCC--C
Q 018665 36 PDQILVSNGAKQSILQAVLAVC-------SPG-DEVIIPAPFWVSYP-EMARIADAT-----------PVILPTRIS--E 93 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~-------~~~-~~vl~~~~~~~~~~-~~~~~~g~~-----------v~~i~~~~~--~ 93 (352)
.+.++++++|++|++.+++... +++ ..|+.....|++.. ..+...+.. +..+|.+.. .
T Consensus 115 ~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~ 194 (460)
T PRK12403 115 YSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYAN 194 (460)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCccccc
Confidence 3789999999999999998763 222 34555555666543 343332221 222222110 0
Q ss_pred Cccc--------CHHHHHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 94 NFLL--------DPKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 94 ~~~~--------d~~~l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
.+.. +++.+++.+. +++.+|++...+...|.. .|.+.+++|.++|++| |+++|+||++.+++..|.
T Consensus 195 ~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~-g~lLI~DEV~tGfGRtG~ 273 (460)
T PRK12403 195 GGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY-DVLLCADEVIGGFGRTGE 273 (460)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCch
Confidence 0001 1345555542 456777777777777865 5678999999999999 999999999998877664
Q ss_pred CccccccCCCCCCceEEEeccccccccccc-eeEEEEcChhHHHHHHhh----hhccccCCChHHHHHHHHHhcccCCCh
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~-~~g~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
.. ......-. ++ +.+++|.+| +|. ++|.+++++++.+.+... ...++++.|+...+++.++|+.-.. +
T Consensus 274 ~~-a~e~~gv~-PD---iv~~gK~lg-gG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~-~ 346 (460)
T PRK12403 274 WF-AHEHFGFE-PD---TLSIAKGLT-SGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRD-E 346 (460)
T ss_pred hh-hhhhcCCC-CC---eEEEccccc-ccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-c
Confidence 22 21222221 22 334899998 785 999999999988877531 1345677999999999999876211 2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCC-CCChHHHHHHHHHccCEEeccCC
Q 018665 236 EVVSKMV-KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 236 ~~~~~~~-~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
+.++++. ..-...++.+.+..++.+.+.-+. ..|.++.+++......... ... ......+.+.+.++ |+.+.+.
T Consensus 347 ~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-G~Gl~~gie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-Gll~~~~- 422 (460)
T PRK12403 347 GVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQ-GAGLVAALQFAEDKATRKR-FANENDLAWRCRTIGFEE-GVIIRST- 422 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEe-ecceEEEEEEccCcccccc-ccchhHHHHHHHHHHHhC-CEEEEec-
Confidence 2233332 333333444444444443233233 4456666666321110000 000 00122344555655 8998753
Q ss_pred CCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 314 AFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 314 ~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+.+|++++. +++|+++++++|+++++++.+
T Consensus 423 ----~~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~ 455 (460)
T PRK12403 423 ----LGRMIMAPALVAGRAEIDELVDKTRIAVDRTAR 455 (460)
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2468999988 999999999999999988754
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=148.51 Aligned_cols=211 Identities=14% Similarity=0.155 Sum_probs=155.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH----HHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~----~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+++|.+=+ .---+.+.|++.|+..++..+++.||+|+....-|.+.. ..++..|+++.+++.+
T Consensus 69 ~RiAaLEG-------G~aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~------ 135 (426)
T COG2873 69 ERIAALEG-------GVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPD------ 135 (426)
T ss_pred HHHHHhhc-------chhhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCC------
Confidence 77777743 334467789999999999999999999998888777655 4567899999999742
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
|++++++++++++++|++..-.||.+.+.+ +++|+++|+++ ++++|||..+.. + +..-+-+++-.|
T Consensus 136 -d~~~~~~aI~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~-gvpliVDNT~at--------p-yl~rP~~hGADI 201 (426)
T COG2873 136 -DPENFEAAIDENTKAVFAETIGNPGLDVLD---IEAIAEIAHRH-GVPLIVDNTFAT--------P-YLCRPIEHGADI 201 (426)
T ss_pred -CHHHHHHHhCcccceEEEEeccCCCccccC---HHHHHHHHHHc-CCcEEEecCCCc--------c-eecchhhcCCCE
Confidence 799999999999999999999999999999 99999999999 999999998764 1 222222356679
Q ss_pred EEeccccccccccceeEEEEcChhHHHHH----------------------------------HhhhhccccCCChHHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAAC----------------------------------NKIQSQFTSGASSISQK 222 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~ 222 (352)
++.|.+|++|..|.-+|.++.+....+.- ....+..+.+.+++..-
T Consensus 202 VvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAf 281 (426)
T COG2873 202 VVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAF 281 (426)
T ss_pred EEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHH
Confidence 99999999987898888888643322211 00111222334444433
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceec
Q 018665 223 AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 265 (352)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 265 (352)
.....+ +.+.-+.++..++...+.+.|++.|.+.++
T Consensus 282 l~lqGl-------ETL~LRmerH~~NA~~vA~~L~~HpkV~~V 317 (426)
T COG2873 282 LLLQGL-------ETLSLRMERHCENALKVAEFLENHPKVAWV 317 (426)
T ss_pred HHHhch-------hhhHHHHHHHHHhHHHHHHHHhcCCCeeee
Confidence 333332 334455556667788888899888776665
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-18 Score=157.85 Aligned_cols=280 Identities=13% Similarity=0.088 Sum_probs=184.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHH-HHHhcC-------------CeEEEecccCCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPE-MARIAD-------------ATPVILPTRISE 93 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~-~~~~~g-------------~~v~~i~~~~~~ 93 (352)
-+.+++++++++|++.+++.... ...+|+.....|++... ++...+ ..+..+|.+...
T Consensus 100 ~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 179 (422)
T PRK05630 100 LDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVR 179 (422)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCccc
Confidence 36899999999999999986421 23578888888877543 222211 122333333111
Q ss_pred Ccc-cC----HHHHHhhccCCeeEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccc
Q 018665 94 NFL-LD----PKVLESKLTEKSRLLILCSP-SNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 94 ~~~-~d----~~~l~~~l~~~~~~i~i~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
... -+ .+.+++.+.+++.+++++.. +...|.. +|.+.+++|.++|++| |+++|+||++.++...|... ...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~-g~llI~DEv~tG~GrtG~~~-a~~ 257 (422)
T PRK05630 180 GSSPQEISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKH-DILLIADEIATGFGRTGELF-ATL 257 (422)
T ss_pred CCChHHHHHHHHHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEEEecceeCCCcCchhh-HHH
Confidence 100 01 24455555567888888774 7767765 5677899999999999 99999999998886655421 111
Q ss_pred cCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh------hhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
.....+| +.+++|.++ +| .++|++++++++.+.+... ....+++.|+...+++.++++.-.. .
T Consensus 258 ~~gv~PD----i~t~gK~l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~-~---- 327 (422)
T PRK05630 258 AAGVTPD----IMCVGKALT-GGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIET-G---- 327 (422)
T ss_pred hcCCCCC----eeeeechhh-cCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHh-C----
Confidence 1111112 447899997 67 5899999999998877532 2345678999999999998876211 1
Q ss_pred HHHHHHHHHHHHHHHHhcc---cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
+..++.+++-+++.+.|++ .+.+.-+. ..|.++.+++.... .+..+.+.++++ |+.+.+.
T Consensus 328 ~~~~~~~~~g~~l~~~L~~l~~~~~v~~vR-g~Gl~~~ie~~~~~-----------~~~~~~~~~~~~-Gl~~~~~---- 390 (422)
T PRK05630 328 MWRKQVKRIEAELIAGLSPLAHLPGVADVR-VLGAIGVVEMEQPV-----------DMEEATQAAVDH-GVWLRPF---- 390 (422)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCeeeee-ccccEEEEEECCcc-----------cHHHHHHHHHHC-CeEEEec----
Confidence 2233444444555554443 33333233 23666777775321 456788888876 9998763
Q ss_pred CCCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 317 DDTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 317 ~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
.+.+|+.++. +++|+++++++|++++++
T Consensus 391 -g~~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 391 -GRLVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred -CCEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 2689998887 999999999999999865
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-18 Score=155.01 Aligned_cols=286 Identities=13% Similarity=0.108 Sum_probs=184.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHH-HHHhcC------------CeEEEecccCC--
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRIS-- 92 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~-~~~~~g------------~~v~~i~~~~~-- 92 (352)
-+.++++++|++|++.+++.... ...+|+.....|++... ++...| ..+..+|.+..
T Consensus 106 ~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~ 185 (442)
T PRK13360 106 LNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLA 185 (442)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhh
Confidence 36899999999999999886421 23578888888887642 221111 12233333210
Q ss_pred -CCccc--------CHHHHHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 93 -ENFLL--------DPKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 93 -~~~~~--------d~~~l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
..+.. .++.+++.+. +++.+|++...+...|.. .|.+.+++|.++|++| |+++|+||++.+++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~-g~llI~DEv~tG~Grt 264 (442)
T PRK13360 186 RNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKH-GILLIFDEVITGFGRL 264 (442)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCC
Confidence 00110 1456677663 456777777777777876 5677899999999999 9999999999888666
Q ss_pred CCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh-------hhccccCCChHHHHHHHHHhcc
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
|... ........+| +.+++|.++ +| +++|.+++++++++.+... ...++++.+++..+++.++++.
T Consensus 265 G~~~-a~~~~gv~PD----ivt~gK~l~-gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~ 338 (442)
T PRK13360 265 GAPF-AAQYFGVTPD----LLTCAKGLT-NGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDL 338 (442)
T ss_pred ccch-hhhhcCCCCc----eeeeeeccc-cCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 6431 1111111112 457899997 66 7899999999998876531 2345777899999999998875
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
-. + +.+.++.+++-+++.+.|+++ +.+.-+. ..|.+.-+.+....... ...+.++.+.+.++ ||
T Consensus 339 l~--~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vr-G~Gl~~~~~l~~~~~~~------~~~~~~~~~~l~~~-Gv 405 (442)
T PRK13360 339 YE--R---EGLLTRAARLAPYWEDALHSLRDAPHVIDIR-NLGLVGAVELAPRDGKP------GKRAYEVFLKCFEK-GL 405 (442)
T ss_pred HH--h---CCHHHHHHHHHHHHHHHHHHhhcCCCeeeee-ccceEEEEEEecCCCCc------chhHHHHHHHHHHC-Cc
Confidence 21 1 134455555666666666543 2222222 23444444442210000 01356788888876 99
Q ss_pred EeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 308 ALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.++ .+.+|++++. +++|+++++++|.++++++
T Consensus 406 l~~~~-----~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 406 MIRYT-----GDILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred EEEec-----CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 98763 3579999876 9999999999999998754
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=158.69 Aligned_cols=280 Identities=13% Similarity=0.099 Sum_probs=184.4
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-------CCCCEEEecCCCCCChHHH-HHhcC-------------CeEEEecccCCC-
Q 018665 36 PDQILVSNGAKQSILQAVLAVC-------SPGDEVIIPAPFWVSYPEM-ARIAD-------------ATPVILPTRISE- 93 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~-------~~~~~vl~~~~~~~~~~~~-~~~~g-------------~~v~~i~~~~~~- 93 (352)
.+.+++++||++|++.+++... .+..+|+....+|++.... +...+ ..+..++.+...
T Consensus 103 ~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 182 (428)
T PRK07986 103 LECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRF 182 (428)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCccc
Confidence 3689999999999999998643 1236788888888775422 22111 112223322110
Q ss_pred --Cc-ccCHHHHHhhcc---CCeeEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 94 --NF-LLDPKVLESKLT---EKSRLLILCSP-SNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 94 --~~-~~d~~~l~~~l~---~~~~~i~i~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
.+ .-|++.+++.++ ++..+|++... +...|.. ++++.+++|.++|+++ |+++|+||++.+++..|... ..
T Consensus 183 ~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~-g~lLI~DEv~tG~GrtG~~f-a~ 260 (428)
T PRK07986 183 DGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDRE-GILLIADEIATGFGRTGKLF-AC 260 (428)
T ss_pred chhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCCCee-ee
Confidence 00 125677777774 35667777664 5556654 5678999999999999 99999999998876655421 11
Q ss_pred ccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh-----hhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....-.+| +.+++|.++ +| +++|.+++++++.+.+... ....+++.|++..+++.+.++.-.. .
T Consensus 261 ~~~gv~PD----i~t~gK~l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~-~---- 330 (428)
T PRK07986 261 EHAGIAPD----ILCLGKALT-GGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLES-G---- 330 (428)
T ss_pred cccCCCCC----EEEechhhh-CCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh-C----
Confidence 21211112 335899998 78 5999999999998887642 2345677899999999888875211 1
Q ss_pred HHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
++.++.+++-+++.+.|+++ +.+.-+. ..|.++.+++.... ....+.+.+.++ |+.+.+.
T Consensus 331 ~~~~~~~~~g~~l~~~l~~l~~~~~i~~vR-g~Gl~~~ve~~~~~-----------~~~~~~~~l~~~-Gl~~~~~---- 393 (428)
T PRK07986 331 DWQQQVAAIEAQLREELAPLRDAPMVADVR-VLGAIGVVETTRPV-----------NMAALQRFFVEQ-GVWIRPF---- 393 (428)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEeEe-ccceEEEEEeCCcc-----------cHHHHHHHHHHC-CcEEEec----
Confidence 23444555555555555543 3332222 23555666664321 456788888876 9998763
Q ss_pred CCCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 317 DDTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 317 ~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
.+.+|+.++. +++|+++++++|.+++++
T Consensus 394 -g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 394 -GKLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred -CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 2589998876 999999999999999864
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-18 Score=157.66 Aligned_cols=297 Identities=12% Similarity=0.110 Sum_probs=183.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHH-HHHhcCC-----------eEEEecccCCC--Ccc--c
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPE-MARIADA-----------TPVILPTRISE--NFL--L 97 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~-~~~~~g~-----------~v~~i~~~~~~--~~~--~ 97 (352)
.+.+++++|+++|++.+++... ....+|+.....|++... ++...+. .+..++.+... .+. .
T Consensus 112 ~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 191 (451)
T PRK06062 112 LSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATT 191 (451)
T ss_pred CCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCC
Confidence 3689999999999999998753 234578888777777653 3322221 11222222111 010 1
Q ss_pred C-------HHHHHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 98 D-------PKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 98 d-------~~~l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
| ++.+++.++ +++.+|++...+...|.. +|.+.+++|.++|+++ |+++|+||++.+|+..|... ..
T Consensus 192 ~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~-g~lLI~DEV~tGfGRtG~~~-a~ 269 (451)
T PRK06062 192 EEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRH-GIVLIADEVMAGFGRTGKWF-AI 269 (451)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc-CCEEEeeccccCCCcCcHHH-HH
Confidence 2 566777774 356777777777777766 5678999999999999 99999999999886665421 11
Q ss_pred ccCCCCCCceEEEeccccccccccc-eeEEEEcChhHHHHHHhh--hhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~-~~g~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
....-. .-+.+++|.+| +|. ++|.+++++++++.+... ...++++.|+...+++.++|+.... ++..++..
T Consensus 270 ~~~gv~----PDi~t~gK~lg-gG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~-~~l~~~~~ 343 (451)
T PRK06062 270 EHFGVV----PDLITFAKGVN-SGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEE-EGIVENAA 343 (451)
T ss_pred HhcCCC----CCeeeechhhh-cCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHH
Confidence 112111 22667899998 784 999999999998877532 3445778899999999999976211 12222222
Q ss_pred HHH-HHHHHHHHHHhcccCCceecCCCCceEEEeecCCccC-Ccc-cCCC-CCCChHHHHHHHHHccCEEeccCCCCCCC
Q 018665 243 KAF-RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SEA-EGFG-KIENSESLCRYLLDKAQVALVPGDAFGDD 318 (352)
Q Consensus 243 ~~~-~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~-~~~-~~~~-~~~~~~~~~~~l~~~~gi~i~~g~~~~~~ 318 (352)
+.- ...++.|.+..++.+.+.-+. ..|.++.+++..... ... .... .......+.+.|+++ |+.+.+. .
T Consensus 344 ~~G~~~l~~~L~~l~~~~~~v~~vr-G~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~-----~ 416 (451)
T PRK06062 344 RIGAEVLGPGLRELAERHPSVGEVR-GLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKER-GLLPFVN-----G 416 (451)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEeEe-ccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHC-CcEEeec-----C
Confidence 211 123333433333343332233 335555666532110 000 0000 000134677888865 8987652 4
Q ss_pred CeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 319 TCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 319 ~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
+.+|++++. +++||++++++++++++++.
T Consensus 417 ~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 417 NRIHVVPPCTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred CEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence 679998865 99999999999999998764
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-17 Score=154.70 Aligned_cols=292 Identities=15% Similarity=0.158 Sum_probs=182.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHH-HHHhcC------------CeEEEecccCCC-
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRISE- 93 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~-~~~~~g------------~~v~~i~~~~~~- 93 (352)
-+.+++++||++|++.+++.... ...+|+.....|++... ++...+ ..+..++.+...
T Consensus 104 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 183 (449)
T PRK07481 104 MRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYR 183 (449)
T ss_pred CCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccc
Confidence 36899999999999999986431 23578888888887553 222111 112223222100
Q ss_pred -Ccc-cCHHH--------HHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 94 -NFL-LDPKV--------LESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 94 -~~~-~d~~~--------l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
.+. .|++. +++.+. +++.+|++...+...|.. +|.+.++++.++|+++ |+++|.||++.++...
T Consensus 184 ~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~tGfGRt 262 (449)
T PRK07481 184 NPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRH-GILLIADEVVTGFGRT 262 (449)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHc-CCEEEEeehhhCcCcC
Confidence 011 13333 344332 467888887777777765 5777899999999999 9999999999998766
Q ss_pred CCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh-------hhccccCCChHHHHHHHHHhcc
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
|.... ...... ..-+.+++|.+| +| +++|.+++++++.+.+... ....+++.|++..+++.++++.
T Consensus 263 G~~~a-~~~~gv----~PDiv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~ 336 (449)
T PRK07481 263 GSWFG-SRGWGV----KPDIMCLAKGIT-SGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDI 336 (449)
T ss_pred chhhH-hhhcCC----CCCEEEEeeccc-CCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 64211 111111 122566789998 78 5999999999998877531 3445678899999999999875
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCC-CCCChHHHHHHHHHcc
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG-KIENSESLCRYLLDKA 305 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~ 305 (352)
-. + +++.++.++.-+++.+.|++ .+-+.-+. ..|.++.+++......+.. .. .......+.+.++++
T Consensus 337 l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-G~Glm~gi~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 408 (449)
T PRK07481 337 VV--R---EDLPANAAKRGAYLLEGLQPLKERFELVGDVR-GKGLMLALDLVADKATREP-IDPSKGYANAVADVAREN- 408 (449)
T ss_pred HH--h---hhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEe-ecceEEEEEecccccccCC-CCchhHHHHHHHHHHHhC-
Confidence 21 1 12333444444444444443 32222222 3356666666321100000 00 000234677777765
Q ss_pred CEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 306 QVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 306 gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
|+.+.+. .+.+|++++. +++|++++++.|.++++++.
T Consensus 409 Gvl~~~~-----g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 409 GVLVRPS-----GTKIILSPPLVIQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred CeEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999774 2358999877 99999999999999998764
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-18 Score=157.17 Aligned_cols=286 Identities=15% Similarity=0.147 Sum_probs=186.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHH-HHHhcC------------CeEEEecccC-CC
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRI-SE 93 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~-~~~~~g------------~~v~~i~~~~-~~ 93 (352)
.+.+++++||++|++.+++.... ...+|+.....|++... ++...| ..+..+|.+. ..
T Consensus 109 ~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (445)
T PRK09221 109 LDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLP 188 (445)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCcccc
Confidence 36899999999999999986431 13578888888876542 221111 1223333321 00
Q ss_pred --Ccc--------cCHHHHHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 94 --NFL--------LDPKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 94 --~~~--------~d~~~l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
.+. ...+.+++.++ +++.+|++...+...|.. .|.+.+++|.++|+++ |+++|+||++.+++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~-g~llI~DEV~tG~GRt 267 (445)
T PRK09221 189 ENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKH-GILLIFDEVITGFGRL 267 (445)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCCCcC
Confidence 000 01345666553 467778887778778875 4677899999999999 9999999999888666
Q ss_pred CCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHh-------hhhccccCCChHHHHHHHHHhcc
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
|... ........+| +.+++|.++ +| +++|.+++++++++.+.. ....++++.+++..+++.+.++.
T Consensus 268 G~~~-~~~~~gv~PD----i~~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~ 341 (445)
T PRK09221 268 GAAF-AAERFGVTPD----IITFAKGLT-NGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDI 341 (445)
T ss_pred chhh-HHHhcCCCCC----EEEeccccc-cCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHH
Confidence 6421 1111211122 567899997 66 689999999998887643 12345677899999888888875
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
-. -+.+.++.+++-+++++.|+++ +.+.-+. ..|.+..+++...... . ...+.++.+.++++ |+
T Consensus 342 i~-----~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vr-g~Gl~~~v~~~~~~~~--~----~~~~~~~~~~~~~~-Gv 408 (445)
T PRK09221 342 YR-----EEDLFERAAELAPYFEDAVHSLKGLPHVIDIR-NIGLVAGIELAPRPGA--P----GARGYEAFMKCFEK-GL 408 (445)
T ss_pred HH-----hccHHHHHHHHHHHHHHHHHhhccCCCEEEEe-cCceEEEEEEeccccc--c----cchHHHHHHHHHHC-Ce
Confidence 21 1234556666777777777654 2222222 2355555555321000 0 01345788888876 89
Q ss_pred EeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 308 ALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.++ .+.+|++++. +++|+++++++|++++.++
T Consensus 409 ~~~~~-----~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 409 LVRYT-----GDTIALSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred EEeec-----CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 98763 3589999876 9999999999999999764
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-18 Score=157.09 Aligned_cols=291 Identities=13% Similarity=0.134 Sum_probs=183.6
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChH-HHHHhcCC------------eEEEecccCCCC--cc-c
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYP-EMARIADA------------TPVILPTRISEN--FL-L 97 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~-~~~~~~g~------------~v~~i~~~~~~~--~~-~ 97 (352)
.+.+++++|+++|++.+++... ....+|+.....|++.. ..+...+. .+..++.+.... +. .
T Consensus 130 ~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (459)
T PRK06082 130 LNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDA 209 (459)
T ss_pred CCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCCh
Confidence 3689999999999999988653 23367887777777654 33332221 122233221000 00 0
Q ss_pred ------CHHHHHhhcc--CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCC
Q 018665 98 ------DPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 169 (352)
Q Consensus 98 ------d~~~l~~~l~--~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~ 169 (352)
+++.+++.++ +++.+|++...++..+...|.+.+++|.++|++| |+++|+||++.+++..|... ......
T Consensus 210 ~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tG~GRtG~~f-a~e~~g 287 (459)
T PRK06082 210 DGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKH-NVLLIIDEIPNGMGRTGEWF-THQAYG 287 (459)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchhh-HhHhhC
Confidence 1345666664 3667777777676656678889999999999999 99999999999887666421 111122
Q ss_pred CCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Q 018665 170 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248 (352)
Q Consensus 170 ~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 248 (352)
.. ++ +.+++|.+| +| .++|.+++++++...+......++++.|++..+++.+.++.-. + +++.++.+++
T Consensus 288 v~-PD---iv~~gKgl~-gG~~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~--~---~~l~~~~~~~ 357 (459)
T PRK06082 288 IE-PD---ILCIGKGLG-GGLVPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALATIEVIE--Q---EGLLEKVKAD 357 (459)
T ss_pred CC-CC---EEEeccccc-CCCCcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH--h---cCHHHHHHHH
Confidence 11 22 334899998 67 5999999998876543221112577899999999999987521 1 1344455555
Q ss_pred HHHHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEE
Q 018665 249 RDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324 (352)
Q Consensus 249 ~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~ 324 (352)
-+++.+.|++ ++.+.-+. ..|.++.+++........... .....+...++++ |+.+.+. ..+.+|++
T Consensus 358 g~~l~~~L~~l~~~~~~i~~vr-G~Gl~~~ve~~~~~~~~~~~~---~~~~~~~~~~~~~-Gvl~~~~----~~~~i~~~ 428 (459)
T PRK06082 358 SQFMRERLLEMKAKYPLIGDVR-GIGLLWGVELVTDRHTKERAY---DEAEAVLYRCLNN-GLSFKVS----QGNVIQLS 428 (459)
T ss_pred HHHHHHHHHHHHhhCCCeeeee-eccceeEEEEccCccccCccH---HHHHHHHHHHHhC-CCEEEec----CCCEEEEe
Confidence 5555555544 33222233 345556666642111000000 0145677777765 9988763 25789999
Q ss_pred eec--CHHHHHHHHHHHHHHHhhhC
Q 018665 325 YAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 325 ~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
++. +++|++++++++++++.++.
T Consensus 429 Ppl~it~~eid~~~~~l~~~l~~~~ 453 (459)
T PRK06082 429 PPLIITREELTQALAILEEAIAKIC 453 (459)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHh
Confidence 887 99999999999999998764
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-18 Score=156.88 Aligned_cols=293 Identities=11% Similarity=0.064 Sum_probs=185.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhc------C--CCCEEEecCCCCCChHHHH-HhcC------------CeEEEecccCCCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVC------S--PGDEVIIPAPFWVSYPEMA-RIAD------------ATPVILPTRISEN 94 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~------~--~~~~vl~~~~~~~~~~~~~-~~~g------------~~v~~i~~~~~~~ 94 (352)
-+.++++++|++|++.+++... . ...+|+.....|++..... ...+ ..+..++.+....
T Consensus 109 ~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~ 188 (460)
T PRK06105 109 MSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYR 188 (460)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccc
Confidence 3689999999999999998742 1 2357888777777655322 2111 1122233221100
Q ss_pred c-----------ccCHHHHHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 95 F-----------LLDPKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 95 ~-----------~~d~~~l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
+ ....+++++.+. +++.+|++...+...|.. .|++.+++|.++|++| |+++|+||++.+++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~-~~llI~DEv~tG~GRt 267 (460)
T PRK06105 189 FGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKY-DILLVADEVICGFGRT 267 (460)
T ss_pred cccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCeEEEeccccCCCcC
Confidence 0 001345666652 356777877777777765 5788999999999999 9999999999988776
Q ss_pred CCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh-------hhccccCCChHHHHHHHHHhcc
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
|... ....... ..-+.+++|.+| +| +++|.+++++++++.+... ...++++.|++..+++.+.|+.
T Consensus 268 G~~f-~~~~~~v----~PDi~~~gK~lg-gG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~ 341 (460)
T PRK06105 268 GNMF-GCETFGI----KPDILVMSKQLS-SSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAI 341 (460)
T ss_pred chhh-hHHhcCC----CCCeeeeecccc-cCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHH
Confidence 6422 2222221 122667899998 66 6999999999998877532 1345778999999999998876
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcc---cCCceecCCCCceEEEeecCCccCCcccCCCC-CCChHHHHHHHHHccC
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQ 306 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~g 306 (352)
-.. . ++.++.++.-+++.+.|++ .+.+.-+. .-|.++.+++......+. .+.. ...+..+.+.++++ |
T Consensus 342 i~~-~----~l~~~v~~~g~~l~~~L~~l~~~~~v~~vr-G~Gl~~gie~~~~~~~~~-~~~~~~~~a~~i~~~~~~~-G 413 (460)
T PRK06105 342 IEE-R----DLVGNAAERGARLQARLRALADHPLVGEVR-GVGLIAAVELVADKATKT-PFEPPGKVGARANAAAHEH-G 413 (460)
T ss_pred HHh-c----cHHHHHHHHHHHHHHHHHHhhcCCCeEEEE-ecceEEEEEEecCcccCC-CCCchhHHHHHHHHHHHHC-C
Confidence 221 2 3344444444455554443 33232222 335656666532110000 0000 00135677777765 9
Q ss_pred EEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 307 VALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 307 i~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+.+.+. .+.+|++++. +++|+++++++|.++++++..
T Consensus 414 vl~~~~-----g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 414 VISRAM-----GDTLAFCPPLIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred eEEEec-----CCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 999763 3589999887 999999999999999987643
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-18 Score=158.08 Aligned_cols=274 Identities=16% Similarity=0.071 Sum_probs=179.4
Q ss_pred CChHHHHHHHHHHhcCCCCEEEecCC---CCCChHHHHH---hcCCe----EEEecccCCCCcccCHHHHHhhcc-CCee
Q 018665 43 NGAKQSILQAVLAVCSPGDEVIIPAP---FWVSYPEMAR---IADAT----PVILPTRISENFLLDPKVLESKLT-EKSR 111 (352)
Q Consensus 43 ~g~~~a~~~~~~~l~~~~~~vl~~~~---~~~~~~~~~~---~~g~~----v~~i~~~~~~~~~~d~~~l~~~l~-~~~~ 111 (352)
.+|+.|+..++.+++++||+|+..+. .|.++..... ..... +..+..+. .+..+|+++|++.+. .+++
T Consensus 107 ~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~-~~g~iD~d~Le~~l~~~~pk 185 (475)
T PLN03226 107 LSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE-STGLIDYDKLEKKAMLFRPK 185 (475)
T ss_pred CchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC-CCCCcCHHHHHHHHhhcCCe
Confidence 78889999999999999999998553 3333322211 11121 11333332 345689999999886 4677
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccce
Q 018665 112 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 191 (352)
Q Consensus 112 ~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~ 191 (352)
+|++. .+ .+|...| +++|.++|+++ |+++++|++|...........+.. ...+++++|++|+++ |.+
T Consensus 186 lIv~~-~S-~~s~~~D---~a~i~~ia~~~-ga~LlvD~AH~~Gli~~~~~~~p~-----~~~Div~~t~hK~L~--GP~ 252 (475)
T PLN03226 186 LIIAG-AS-AYPRDWD---YARMRKIADKV-GALLMCDMAHISGLVAAQEAASPF-----EYCDVVTTTTHKSLR--GPR 252 (475)
T ss_pred EEEEe-cC-cCCCccC---HHHHHHHHHHc-CCEEEEEchhhhCcccCCCCCCCC-----CCCeEEEecCccccc--CCC
Confidence 66552 23 2677888 88999999999 999999999986433222111111 134589999999982 334
Q ss_pred eEEEEcChhHH-----------HH---HHhh-hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHh
Q 018665 192 LGYIAGPKHFV-----------AA---CNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 256 (352)
Q Consensus 192 ~g~l~~~~~~~-----------~~---~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 256 (352)
.|+++++++.. +. +... ...+..+++....+++.++++... ....++..+++.++.+++.+.|
T Consensus 253 Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~--~~~~~~~~~~~~~na~~L~~~L 330 (475)
T PLN03226 253 GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAM--TPEFKAYQKQVKANAAALANRL 330 (475)
T ss_pred ceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHHHHH
Confidence 48888877543 21 1111 111334566666666666676421 2335667888999999999999
Q ss_pred cccCCceecCCC-CceEEEeec-CCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-----CCCeEEEEeec--
Q 018665 257 GELEGVKMSEPQ-GAFYLFIDF-STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYAA-- 327 (352)
Q Consensus 257 ~~~~g~~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-----~~~~iRi~~~~-- 327 (352)
++. |+.++.+. ....+++++ +... +..++.+.|.+ .||.+..+...+ .++.+|+..+.
T Consensus 331 ~~~-G~~l~~~~t~~hi~lv~~~~~gi-----------~~~~~~~~L~~-~~I~~nk~~~p~~~~~~~~~giRiGt~~lt 397 (475)
T PLN03226 331 MSK-GYKLVTGGTDNHLVLWDLRPLGL-----------TGSRVEKVLDL-AHITLNKNAVPGDSSALVPGGVRIGTPAMT 397 (475)
T ss_pred HhC-CCEEEcCCCCCCEEEEEccCCCC-----------CHHHHHHHHHH-CCCEECCCCCCCCcccCCCCCcccCcHHHH
Confidence 986 99887542 245566776 3322 66777777665 589987664222 35678985432
Q ss_pred ----CHHHHHHHHHHHHHHHhh
Q 018665 328 ----SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 328 ----~~~~l~~~~~~l~~~~~~ 345 (352)
+++|++++.+.|.++++.
T Consensus 398 ~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 398 SRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred HCCCCHHHHHHHHHHHHHHHHH
Confidence 779999999999999974
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-17 Score=154.08 Aligned_cols=303 Identities=10% Similarity=0.077 Sum_probs=185.8
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHH-HHHhcCC------------eEEEecccCCCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPE-MARIADA------------TPVILPTRISEN 94 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~-~~~~~g~------------~v~~i~~~~~~~ 94 (352)
.+.+++++|+++|++.+++.... ...+|+.....|++... .+...+. .+..++.+...+
T Consensus 90 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~ 169 (443)
T PRK07483 90 LEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYR 169 (443)
T ss_pred CCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCcccc
Confidence 36899999999999999986421 23568887777776642 3322111 112222221000
Q ss_pred cc---c--------CHHHHHhhcc----CCeeEEEEcCCCC-Ccc-cCCCHHHHHHHHHHHHhCCCEEEEeccccccccc
Q 018665 95 FL---L--------DPKVLESKLT----EKSRLLILCSPSN-PTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 157 (352)
Q Consensus 95 ~~---~--------d~~~l~~~l~----~~~~~i~i~~p~n-ptG-~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~ 157 (352)
.. . .++++++.+. +++.+|++...+. ..| ..+|++.+++|.++|++| |+++|.||++.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfGR 248 (443)
T PRK07483 170 EQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRY-GVLLILDEVMCGMGR 248 (443)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHh-CCEEEEecceeCccc
Confidence 00 0 1245665452 4677777776664 345 456788999999999999 999999999999877
Q ss_pred CCCCccccccCCCCCCceEEEeccccccccccc-eeEEEEcChhHHHHHHhh----hhccccCCChHHHHHHHHHhcccC
Q 018665 158 APATHTSFASLPGMWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~-~~g~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
+|... ........ .-+.+++|.++ +|. ++|.+++++++.+.+... ...++++.|++..+++.+.++...
T Consensus 249 tG~~~-a~~~~gv~----PDiv~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~ 322 (443)
T PRK07483 249 TGTLF-ACEEDGVA----PDLVTIAKGLG-AGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIA 322 (443)
T ss_pred CcHHH-HHhhcCCC----CCeeeehhhhc-cCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 66421 11111111 22566789998 885 999999999998877532 244577899999999999987521
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
. ++..++..+.-...++.|.+.+++++.+.-+. ..|.++.+++.+.................+.+.++++ |+.+.+.
T Consensus 323 ~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vR-G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~ 399 (443)
T PRK07483 323 E-DGLLANVRARGEQLRARLRERLGQHPHVGDIR-GRGLFVGVELVADRATKAPFDPALKLHARIKREAMAR-GLMVYPM 399 (443)
T ss_pred h-cCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEe-ecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHC-CcEEEec
Confidence 1 23333333333333444444334443332223 3455566665321100000000000235677888876 8998764
Q ss_pred CCC--C-CCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 313 DAF--G-DDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 313 ~~~--~-~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
... + .++.+|+.++. +++|+++++++|++++.++..
T Consensus 400 ~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~ 440 (443)
T PRK07483 400 GGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALA 440 (443)
T ss_pred CccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 321 1 14689998887 999999999999999987643
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-18 Score=155.17 Aligned_cols=291 Identities=13% Similarity=0.152 Sum_probs=180.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHH-HHhcCCeEE--------EecccCCCC----cccCHH
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEM-ARIADATPV--------ILPTRISEN----FLLDPK 100 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~-~~~~g~~v~--------~i~~~~~~~----~~~d~~ 100 (352)
.+.+++++++++|++.+++... ....+|+.....|++.... +...+.... .++.....+ .-.|++
T Consensus 109 ~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 188 (428)
T PRK12389 109 LEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIE 188 (428)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHH
Confidence 4789999999999999998653 2346788888878876533 322221110 000000000 002678
Q ss_pred HHHhhcc---CCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 101 VLESKLT---EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 101 ~l~~~l~---~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
.+++.+. +++.++++....+..|... |.+.+++|.++|+++ |+++|+||++.++ ..+... ........ .
T Consensus 189 ~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~-g~llI~DEV~tG~-Rt~~~~-a~~~~gv~----P 261 (428)
T PRK12389 189 ALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEA-GALVIYDEVITAF-RFMYGG-AQDLLGVE----P 261 (428)
T ss_pred HHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEcccccc-ccCcch-hhHHhCCC----C
Confidence 8888774 4677777777777778654 677899999999999 9999999999987 433211 11111111 2
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHh---hhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
-+.+++|.+| +|+++|.+++++++++.+.. .....+++.|++..+++.+.++.-.. .+ +.++.+++-+++.
T Consensus 262 Divt~gK~lg-gG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~-~~----l~~~~~~~g~~l~ 335 (428)
T PRK12389 262 DLTALGKIIG-GGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQ-EG----VYEKLDRLGAMLE 335 (428)
T ss_pred Ceeeechhhc-CCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhc-cc----HHHHHHHHHHHHH
Confidence 2567899998 88999999999999888752 22345678999999999999886221 22 3444444555555
Q ss_pred HHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCC--CCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec
Q 018665 254 KSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK--IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 327 (352)
Q Consensus 254 ~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~ 327 (352)
+.|++ ++.+.-+....|+ +.+.+............. ......+.+.+.++ |+.+.+.. .+.+.+++..
T Consensus 336 ~~L~~l~~~~~~~~~v~r~~g~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~l~~ 409 (428)
T PRK12389 336 EGILEAAEKHGITITINRLKGA-LTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQ-GINLAPSK----YEAWFLTTAH 409 (428)
T ss_pred HHHHHHHHhCCCCEEEEecCcE-EEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHC-CcEeecCC----CCCeeecCCC
Confidence 55543 3222112122343 334432210000000000 00145677887865 99998742 2335666667
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 018665 328 SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 328 ~~~~l~~~~~~l~~~~~~ 345 (352)
+++|++++++++++++++
T Consensus 410 t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 410 TEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999875
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-17 Score=153.98 Aligned_cols=298 Identities=12% Similarity=0.087 Sum_probs=184.9
Q ss_pred CcEEEeCChHHHHHHHHHHhc--------CCCCEEEecCCCCCChHHHH-HhcCC------------eEEEecccCCCC-
Q 018665 37 DQILVSNGAKQSILQAVLAVC--------SPGDEVIIPAPFWVSYPEMA-RIADA------------TPVILPTRISEN- 94 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--------~~~~~vl~~~~~~~~~~~~~-~~~g~------------~v~~i~~~~~~~- 94 (352)
+.+++++++++|++.+++... ....+|+.....|++....+ ...+. .+..++.+....
T Consensus 92 ~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 171 (447)
T PRK06917 92 NWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRC 171 (447)
T ss_pred CEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCccccc
Confidence 579999999999999998752 12367888888888765433 22221 112222221100
Q ss_pred -cc--------cCHHHHHhhcc----CCeeEEEEcCCCC-Cccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 95 -FL--------LDPKVLESKLT----EKSRLLILCSPSN-PTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 95 -~~--------~d~~~l~~~l~----~~~~~i~i~~p~n-ptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
+. -+++.+++.++ +++.+|++..... ..|. ..|.+.+++|.++|+++ |+++|+||++.++...|
T Consensus 172 ~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~-g~llI~DEv~tGfGRtG 250 (447)
T PRK06917 172 PVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHY-DILFIADEVMTGLGRTG 250 (447)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHc-CCEEEEechhhCcCccc
Confidence 00 12456666664 3577777776554 4454 56788999999999999 99999999999886666
Q ss_pred CCccccccCCCCCCceEEEeccccccccccc-eeEEEEcChhHHHHHHhh----hhccccCCChHHHHHHHHHhcccCCC
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~-~~g~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
... ........+| +.+++|.+| +|. ++|.+++++++++.+... ....+++.|++..+++.+.++.-.
T Consensus 251 ~~~-a~~~~gv~PD----i~~~gK~l~-~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~-- 322 (447)
T PRK06917 251 AMF-AMEHWGVEPD----IMTLGKGLG-AGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYME-- 322 (447)
T ss_pred chh-hHHhcCCCCC----EEEeeehhc-cCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHH--
Confidence 421 1111221122 567899998 785 999999999998877532 223467789999999999987521
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 310 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~ 310 (352)
-+++.++.+++-+++.+.|++ .+.+.-+. ..|.++.+++...................+.+.++++ |+.+.
T Consensus 323 ---~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~ 397 (447)
T PRK06917 323 ---KHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVR-GKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKN-GLLLY 397 (447)
T ss_pred ---HCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe-ecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhC-CcEEE
Confidence 112334444444445444443 33222222 3455566665321000000000000245677777765 99997
Q ss_pred cCCCC---CCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 311 PGDAF---GDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 311 ~g~~~---~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
++..- ...+.+|++++. +++|+++++++|.++++++..
T Consensus 398 ~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 398 PAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred ecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 74211 124689999884 999999999999999987643
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-17 Score=154.90 Aligned_cols=293 Identities=12% Similarity=0.091 Sum_probs=184.4
Q ss_pred CcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHH-HHHhcCC------------eEEEecccCCCC-
Q 018665 37 DQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPE-MARIADA------------TPVILPTRISEN- 94 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~-~~~~~g~------------~v~~i~~~~~~~- 94 (352)
+.++++++|++|++.+++.... ...+|+.....|++... ++...+. .+..+|.+....
T Consensus 130 ~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~ 209 (472)
T PRK08742 130 SKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLA 209 (472)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCcccc
Confidence 5899999999999999987521 13578888888877653 2222221 123333321100
Q ss_pred -cc--------cCHHHHHhhcc---CCeeEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 95 -FL--------LDPKVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 95 -~~--------~d~~~l~~~l~---~~~~~i~i~~-p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
+. .+++.+++.+. +++.++++.. .++..|. ..|++.++++.++|+++ |+++|.||++.+++.+|.
T Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~-gillI~DEV~TGfGRtG~ 288 (472)
T PRK08742 210 EPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAH-GAFLIADEIATGFGRTGT 288 (472)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCcc
Confidence 00 12566666663 4677777776 3666676 46788999999999999 999999999999877664
Q ss_pred CccccccCCCCCCceEEEeccccccccccc-eeEEEEcChhHHHHHHh------hhhccccCCChHHHHHHHHHhcccCC
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNK------IQSQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~-~~g~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
.. ...... ...-+.+++|.+| +|. ++|.+++++++.+.+.. .....+++.|++..+++.++++.-..
T Consensus 289 ~~-a~e~~g----v~PDiv~~gKgl~-gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~ 362 (472)
T PRK08742 289 LF-ACEQAG----VMPDLLCLSKGLT-GGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFAD 362 (472)
T ss_pred ch-HHHhcC----CCCCEEEEccccc-CCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHH
Confidence 22 112111 1222556789998 784 99999999999887642 12345678899999999999875211
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCC-CCChHHHHHHHHHccCEEeccC
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~i~~g 312 (352)
++..++..+ ..+....+.+.+++++.+.-+. ..|.++.+++......+.. +.. ......+.+.++++ |+.+.+.
T Consensus 363 -~~l~~~~~~-~g~~l~~~~~~~~~~~~i~dvR-G~Gl~~giel~~~~~~~~~-~~~~~~~~~~~~~~~~~~-Gll~~~~ 437 (472)
T PRK08742 363 -DDVIARNQP-TAARMTQLAAQIGEHPHVADVR-QAGMVVAFELTRGGNKRTP-FPPAARVGLHAYRAALAR-GVVLRPL 437 (472)
T ss_pred -CCHHHHHHH-HHHHHHHHHHHHhcCCCeeeEe-ccceEEEEEeccCcccccc-CCchhHHHHHHHHHHHHC-CeEEEec
Confidence 122222222 2222223333444454333333 3456666666421110000 000 00124677777765 9998763
Q ss_pred CCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 313 DAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 313 ~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.+|+.++. +++|+++++++|+++++++
T Consensus 438 -----g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 438 -----GDVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred -----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3689999987 9999999999999999764
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=152.18 Aligned_cols=279 Identities=14% Similarity=0.093 Sum_probs=188.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH---------HhcCCeEEEec--ccCCCCcccCHHHHHh-
Q 018665 37 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA---------RIADATPVILP--TRISENFLLDPKVLES- 104 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~---------~~~g~~v~~i~--~~~~~~~~~d~~~l~~- 104 (352)
.+|... |++.|+..++.+++++||+|+..+..|.++.... ...|..+..++ ++. .+..+|.+++++
T Consensus 216 aNVQp~-SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~-~~g~IDyd~lek~ 293 (586)
T PLN02271 216 VNVQPY-SCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNP-QTGYIDYDKLEEK 293 (586)
T ss_pred cceeec-cHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccccc-ccCccCHHHHHHH
Confidence 456665 7778899999999999999999888777765432 33465555544 543 345699999998
Q ss_pred hccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccc
Q 018665 105 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 184 (352)
Q Consensus 105 ~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 184 (352)
+...++++|++....+| ..+| ++++.++|+++ |+++++|.+|......+...++... ..+++++|.+|+
T Consensus 294 a~~~rPKLII~g~Sayp--r~~D---~~~i~eIAdev-GA~LmvD~AH~aGLIa~g~~~sP~~-----~aDvvt~TTHKt 362 (586)
T PLN02271 294 ALDFRPKILICGGSSYP--REWD---YARFRQIADKC-GAVLMCDMAHISGLVAAKECVNPFD-----YCDIVTSTTHKS 362 (586)
T ss_pred hhhcCCeEEEECchhcc--CcCC---HHHHHHHHHHc-CCEEEEECcccccccccCcCCCCCc-----CCcEEEeCCccc
Confidence 55679999998777777 6678 88999999999 9999999999854333222211111 244999999999
Q ss_pred cccccceeEEEEcChh--------------------HHHHHHhhhhc-cccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 185 FAMTGWRLGYIAGPKH--------------------FVAACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 185 ~g~~g~~~g~l~~~~~--------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
+ .|.|.|.++.+++ +.+++....-+ .-.++.....++.+.++.... ...+.+-.+
T Consensus 363 L--rGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~--~~efk~Ya~ 438 (586)
T PLN02271 363 L--RGPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVA--TPEYKAYMQ 438 (586)
T ss_pred C--CCCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHh--ChHHHHHHH
Confidence 8 5556688887653 33334332211 112333333555555555311 234467778
Q ss_pred HHHHHHHHHHHHhcccCCceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-----C
Q 018665 244 AFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----D 317 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-----~ 317 (352)
++.++.+.|.+.|.+. |+.++.. .....+++++.... .++... +.++++.||.+.-...++ .
T Consensus 439 QVv~NAkaLA~~L~~~-G~~vv~ggTdnHlvLvDl~~~g----------~~G~~a-e~~Le~~~I~~Nkn~iP~d~~~~~ 506 (586)
T PLN02271 439 QVKKNAQALASALLRR-KCRLVTGGTDNHLLLWDLTTLG----------LTGKNY-EKVCEMCHITLNKTAIFGDNGTIS 506 (586)
T ss_pred HHHHHHHHHHHHHHHC-CCeEeeCCCCcceeeecCcccC----------CCHHHH-HHHHHHcCeEeccccCCCCCCCCC
Confidence 8888999999999887 8888743 34556778875431 144444 445556689875544332 2
Q ss_pred CCeEEEEeec------CHHHHHHHHHHHHHHHh
Q 018665 318 DTCIRISYAA------SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 318 ~~~iRi~~~~------~~~~l~~~~~~l~~~~~ 344 (352)
++.+||.... .++|+++..+.|.++++
T Consensus 507 psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 507 PGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 5679998764 66899998888888876
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-17 Score=154.03 Aligned_cols=305 Identities=12% Similarity=0.112 Sum_probs=188.3
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc------C--CCCEEEecCCCCCChHHHHHh-cC----------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC------S--PGDEVIIPAPFWVSYPEMARI-AD---------- 81 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~------~--~~~~vl~~~~~~~~~~~~~~~-~g---------- 81 (352)
..+|+.+... .+-.-+.+++++|+++|++.+++... . ...+|+.....|++....+.. .+
T Consensus 98 ~~lae~L~~~-~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~ 176 (466)
T PRK07036 98 AELAAKLAEL-APGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDY 176 (466)
T ss_pred HHHHHHHHHh-CCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccC
Confidence 4455555411 11123689999999999999998642 1 135788888888876533221 11
Q ss_pred --CeEEEecccCCC--Cccc--------CHHHHHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCE
Q 018665 82 --ATPVILPTRISE--NFLL--------DPKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRL 144 (352)
Q Consensus 82 --~~v~~i~~~~~~--~~~~--------d~~~l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~ 144 (352)
..+..++.+... .... ..+.+++.+. +++.+|++...+...|.. +|.+.+++|.++|++| |+
T Consensus 177 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~-g~ 255 (466)
T PRK07036 177 ASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRY-DI 255 (466)
T ss_pred CCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHc-CC
Confidence 113333332110 0111 1234444442 467788887777777765 5678999999999999 99
Q ss_pred EEEecccccccccCCCCccccc-cCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHh-------hhhccccC
Q 018665 145 LVLSDEIYEHIIYAPATHTSFA-SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSG 215 (352)
Q Consensus 145 ~livD~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~-------~~~~~~~~ 215 (352)
++|+||++.+++..|.. .... .....+ -+.+++|.+| +| +++|.+++++++.+.+.. .....+++
T Consensus 256 llI~DEV~tGfGRtG~~-~~~~~~~gv~P----Divt~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~ 329 (466)
T PRK07036 256 LYISDEVVTGFGRLGHF-FASEAVFGIQP----DIITFAKGLT-SGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYS 329 (466)
T ss_pred EEEEeechhCCCcCchh-hhhhhhcCCCC----CEEEEccccc-cCccccEEEEEcHHHHHHHhcccCcCcccccCCCCC
Confidence 99999999988766642 1111 111111 2567799998 78 499999999999887753 12334678
Q ss_pred CChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhc---ccCCceecCCCCceEEEeecCCccCCccc-CCCCC
Q 018665 216 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG---ELEGVKMSEPQGAFYLFIDFSTYYGSEAE-GFGKI 291 (352)
Q Consensus 216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~ 291 (352)
.|++..+++.+.++.-.. + ++.++.+++-+++.+.|+ +.+.+.-+. ..|.++.+++......+.. .. ..
T Consensus 330 gnpl~~aaa~a~Le~i~~-~----~l~~~~~~~g~~l~~~L~~l~~~~~v~~vr-G~Gl~~~ve~~~~~~~~~~~~~-~~ 402 (466)
T PRK07036 330 GHPVACAAALKNIEIMER-E----GLCEHVREVGPYFEERLASLRELPLVGDVR-GDHLMACVECVADKGSKALLPE-DI 402 (466)
T ss_pred CCHHHHHHHHHHHHHHHh-C----CHHHHHHHHHHHHHHHHHHhccCCCEEEEE-eeceEEEEEEccCccccCCCCc-hh
Confidence 899999999999875211 2 233344444444444443 333222222 3456666766322110000 00 00
Q ss_pred CChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 292 ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 292 ~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.....+.+.++++ |+.+.+. .+.+|++++. +++|+++++++|.++++++
T Consensus 403 ~~~~~~~~~~~~~-Gvl~~~~-----~~~~~l~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 403 AIGQRIDRHCQER-GLLVRPL-----EHLCVLSPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred HHHHHHHHHHHHC-CcEEeec-----CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 0134677777765 8998763 2578999877 9999999999999998776
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-18 Score=155.78 Aligned_cols=296 Identities=13% Similarity=0.080 Sum_probs=182.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC-------C-CCEEEecCCCCCChHH-HHHhcCC------------eEEEecccCCC-
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS-------P-GDEVIIPAPFWVSYPE-MARIADA------------TPVILPTRISE- 93 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~-------~-~~~vl~~~~~~~~~~~-~~~~~g~------------~v~~i~~~~~~- 93 (352)
.+.+++++||++|++.+++.... . ..+|+.....|++... .+...|. .+..++.+...
T Consensus 111 ~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~ 190 (456)
T PRK07480 111 FNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFG 190 (456)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccc
Confidence 46899999999999999986421 1 3468887777776542 2221111 11122211100
Q ss_pred -CcccC--------HHHHHhhc----cCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 94 -NFLLD--------PKVLESKL----TEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 94 -~~~~d--------~~~l~~~l----~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.+..+ ++.+++.+ .+++.+|++...+...|.. .|.+.+++|.++|++| |+++|+||++.+|+.+|
T Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG 269 (456)
T PRK07480 191 EGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKY-DILLVADEVICGFGRTG 269 (456)
T ss_pred cccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCc
Confidence 00001 25555444 2467788887777767775 5677899999999999 99999999999887666
Q ss_pred CCccccccCCCCCCceEEEeccccccccccc-eeEEEEcChhHHHHHHh----hhhccccCCChHHHHHHHHHhcccCCC
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNK----IQSQFTSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~-~~g~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
.. ......... .-+.+++|.++ +|. ++|.+++++++.+.+.. .....+++.|++..+++.++|+....
T Consensus 270 ~~-~a~~~~gv~----PDiv~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~- 342 (456)
T PRK07480 270 EW-FGSQHFGIK----PDLMTIAKGLT-SGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRD- 342 (456)
T ss_pred ch-hhhhhcCCC----CCeeeeehhhc-cCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHh-
Confidence 42 122222211 22567899998 774 89999999999887731 23456788999999999999976211
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCC-CCChHHHHHHHHHccCEEeccC
Q 018665 235 GEVVSKM-VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 235 ~~~~~~~-~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~i~~g 312 (352)
++..++. .+.-...++.+.+ +++.+.+.-+. ..|.++.+++-+...... .+.. ......+.+.++++ |+.+.+.
T Consensus 343 ~~l~~~~~~~~g~~l~~~l~~-l~~~~~i~~vr-G~Glm~gie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-Gll~~~~ 418 (456)
T PRK07480 343 EGIVERVRDDTGPYLQKRLRE-LADHPLVGEVR-GVGLVGAIELVKDKATRE-RFEAGGGVGTICRDHCFAN-GLIMRAV 418 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-hhcCCCeeeEE-eecceEEEEEeccccccc-cCcchhhHHHHHHHHHHHC-CcEEeec
Confidence 2223333 1223333333443 33443222233 335556666632111000 0000 00124566777765 8988652
Q ss_pred CCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 313 DAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 313 ~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+.+|++++. +++|+++++++|.+++.++..
T Consensus 419 -----~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 419 -----GDRMIISPPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred -----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3579999988 999999999999999987643
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-18 Score=154.98 Aligned_cols=290 Identities=12% Similarity=0.117 Sum_probs=178.5
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHH-hc--CCe------EEEecccCC-----CCcccCH
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMAR-IA--DAT------PVILPTRIS-----ENFLLDP 99 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~-~~--g~~------v~~i~~~~~-----~~~~~d~ 99 (352)
.+.+.+++++++|++.+++... ...++|+....+|+++...+. .. +.. ...++.... -.+ .|+
T Consensus 155 ~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~ 233 (474)
T PLN02482 155 VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-NDL 233 (474)
T ss_pred CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-CCh
Confidence 4799999999999999998753 234688888888888653221 10 100 000000000 000 267
Q ss_pred HHHHhhcc---CCeeEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 100 KVLESKLT---EKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 100 ~~l~~~l~---~~~~~i~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
+.+++.+. +++.+|++.......|.+.| ++++++|.++|++| |+++|+||++.++ ..+.. .........
T Consensus 234 ~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~-g~lLI~DEV~tGf-R~g~~-ga~~~~gv~---- 306 (474)
T PLN02482 234 EAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKEN-GALLVFDEVMTGF-RIAYG-GAQEYFGIT---- 306 (474)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCe-ecCcc-hHhHHhCCC----
Confidence 88888774 35677777777777786654 78899999999999 9999999999877 44432 221111111
Q ss_pred EEEeccccccccccceeEEEEcChhHHHHHHhh---hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
.-+.+++|.+| +|+++|.+++++++++.+... ....+++.|++...++.+.|+.-.. . ++.++++++-+++
T Consensus 307 PDi~t~gK~lg-gG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~-~----~~~~~~~~~g~~l 380 (474)
T PLN02482 307 PDLTTLGKVIG-GGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ-P----GTYEYLDKITKKL 380 (474)
T ss_pred CCEEEecchhh-CCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhc-c----CHHHHHHHHHHHH
Confidence 22567899998 889999999999999887532 2334566899999988888876211 2 3444455555555
Q ss_pred HHHhccc---CCceec-CCCCceEEEeecCCccCCcccCCC-C-CCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEee
Q 018665 253 VKSFGEL---EGVKMS-EPQGAFYLFIDFSTYYGSEAEGFG-K-IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326 (352)
Q Consensus 253 ~~~l~~~---~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~ 326 (352)
.+.|+++ .+..+. ....++ +.+.+.......+.... . ......+.+.++++ ||.+.+... +.+ -+++.
T Consensus 381 ~~~L~~l~~~~g~~~~~~~v~g~-~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-Gv~~~~~~~---~~~-~psl~ 454 (474)
T PLN02482 381 IQGILEAGKKAGHEMCGGYISGM-FGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEE-GVYLAPSQF---EAG-FTSLA 454 (474)
T ss_pred HHHHHHHHHhcCCCEEEcccceE-EEEEEecCCccChhhhccCCHHHHHHHHHHHHHC-CeEEeccCC---CCC-cCCCC
Confidence 5555443 133333 222343 22333211000000000 0 00134677888876 999977432 111 25666
Q ss_pred cCHHHHHHHHHHHHHHHhh
Q 018665 327 ASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 327 ~~~~~l~~~~~~l~~~~~~ 345 (352)
++++||+++++++++++++
T Consensus 455 ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 455 HTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 6999999999999999875
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-18 Score=155.53 Aligned_cols=296 Identities=12% Similarity=0.080 Sum_probs=181.2
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHH----HHHhcCCeE----EEec-ccCCCC----cccCHHH
Q 018665 37 DQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPE----MARIADATP----VILP-TRISEN----FLLDPKV 101 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~----~~~~~g~~v----~~i~-~~~~~~----~~~d~~~ 101 (352)
+.++++++|++|++.+++... ....+|+....+|+++.. .....+... .... ...... .-.|++.
T Consensus 111 ~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (433)
T PRK00615 111 HKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQI 190 (433)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHH
Confidence 689999999999999998753 233578888888887541 111111100 0000 000000 0026788
Q ss_pred HHhhcc---CCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEE
Q 018665 102 LESKLT---EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 177 (352)
Q Consensus 102 l~~~l~---~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (352)
+++.+. +++.+|++.......|... +++.+++|.++|++| |+++|+||++.++ ..|. ..........+|
T Consensus 191 l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~-g~llI~DEv~tG~-R~G~-~ga~~~~gv~PD---- 263 (433)
T PRK00615 191 FQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRT-GSLSIMDEVVTGF-RVAQ-GGAAAIYHVKPD---- 263 (433)
T ss_pred HHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEcccccc-cccH-hHHHHhcCCCCC----
Confidence 888774 3566777777677777655 577899999999999 9999999999877 4443 122121111112
Q ss_pred EeccccccccccceeEEEEcChhHHHHHHhh---hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 178 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 178 ~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
+.+++|.+| +|.++|++++++++++.+... ....+++.++...+++.+.++.-.. .+..+++.+......+.+.+
T Consensus 264 i~~~gK~lg-gG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~-~~~~~~~~~~g~~l~~~l~~ 341 (433)
T PRK00615 264 ITVYGKILG-GGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE-QGFYTQLSTLEQNFLSPIEE 341 (433)
T ss_pred eEEEccccc-CCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHH
Confidence 345899998 788999999999999887532 1334566799999999999876221 22233333333333344444
Q ss_pred HhcccCCceecCCCCceEEEeecCCccCCcccCC--CCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeecCHHHH
Q 018665 255 SFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF--GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTL 332 (352)
Q Consensus 255 ~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~~~~~l 332 (352)
.+.+. ++.+.....|.++.+.+.+......... ........+.+.|.++ ||.+.+... +..-++..++++||
T Consensus 342 ~~~~~-g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~----~~~~ls~~ht~~di 415 (433)
T PRK00615 342 MIRSQ-GFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSK-GVYLSPSPF----EASFLSSAHSMENL 415 (433)
T ss_pred HHHHc-CCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHC-CeeecCccc----cccceecCCCHHHH
Confidence 44443 3332222256666677643211000000 0000134688888876 999887531 11246777799999
Q ss_pred HHHHHHHHHHHhhhC
Q 018665 333 QAAVERIKKGLLTLR 347 (352)
Q Consensus 333 ~~~~~~l~~~~~~~~ 347 (352)
+++++.+.++++++-
T Consensus 416 d~~~~a~~~~~~~~~ 430 (433)
T PRK00615 416 DYAQNVLIDSLEKVF 430 (433)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998753
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=155.77 Aligned_cols=281 Identities=11% Similarity=0.051 Sum_probs=186.4
Q ss_pred HHHHHHHHhcCCCCC-CCcEEEe-CChHHHHHHHHHHhcCCCCEEEecCCCCCC-hHHHHHh--cCCeEEEecccCCCCc
Q 018665 21 QQFVINLKENGLSYT-PDQILVS-NGAKQSILQAVLAVCSPGDEVIIPAPFWVS-YPEMARI--ADATPVILPTRISENF 95 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~-~~~i~~~-~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~-~~~~~~~--~g~~v~~i~~~~~~~~ 95 (352)
+.++++++ +. ..+|+++ +|+|.+++.++.++..+ +.+++....|.. +...+.. ++.++..++.+. +.
T Consensus 48 ~~l~~l~~-----~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 119 (361)
T TIGR01366 48 EGLAELFS-----LPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADP--GS 119 (361)
T ss_pred HHHHHHhC-----CCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccCCceEEecCC--CC
Confidence 78888876 43 3478875 66999999999998743 333343444432 2233333 223667776643 21
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
.++ ..+.+++++|++++..|.||...| +++| ++++ |+++|+|.+++. +..+..+.. .+
T Consensus 120 ~~~-----~~~~~~~~lV~~~h~et~tG~~~p---i~~I---~~~~-g~~~iVDavqs~----g~~~idv~~------~D 177 (361)
T TIGR01366 120 APE-----PQADPGVDVIAWAHNETSTGVAVP---VRRP---EGSD-DALVVIDATSGA----GGLPVDIAE------TD 177 (361)
T ss_pred CCC-----CccCCCCCEEEEcccCCccceecc---cccc---cccC-CCeEEEEcCccc----cCCCCCHHH------CC
Confidence 222 234568999999999999999999 6665 4788 999999999986 333333332 24
Q ss_pred EEEeccccccccccceeEEEEcChhHHHHHHhhh---------------------hccccCCChHHHHHHHHHhcccCCC
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
++++|.+|.+|.+| ++++++.++++++++.... ..+..+++.....++.++++.-.
T Consensus 178 ~~~~s~~K~lg~~~-Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~-- 254 (361)
T TIGR01366 178 VYYFAPQKNFASDG-GLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMN-- 254 (361)
T ss_pred EEEEEchhhcCCCC-ceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHH--
Confidence 88999999998554 4777778888877665211 01123344444446666665411
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHhcccCCceecCC-C---CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 235 GE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEP-Q---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 235 ~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
.. .++.+.++.+++.+++.+.++++++++.+.. . ......+.+++.. +..++.+.|.++ ||.+
T Consensus 255 ~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~-----------~~~~v~~~L~~~-gI~i 322 (361)
T TIGR01366 255 GNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDI-----------DAATVAKILRAN-GIVD 322 (361)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCcc-----------CHHHHHHHHHHC-CCee
Confidence 22 3677778889999999999998855555421 1 1111223334332 788899998765 9998
Q ss_pred ccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 310 VPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 310 ~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.++......+.+|+|+.. +.+|++++++.|+++++++
T Consensus 323 ~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 323 TEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred ccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 776433235789999988 9999999999999988753
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-17 Score=153.32 Aligned_cols=287 Identities=13% Similarity=0.046 Sum_probs=179.1
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHH-h--cC----------C------eEEEecccCCCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMAR-I--AD----------A------TPVILPTRISEN 94 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~-~--~g----------~------~v~~i~~~~~~~ 94 (352)
.+.+.+++++++|...+++... ...++|+....+|+++..... . .+ . .+..++
T Consensus 130 ~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------ 203 (453)
T PRK07046 130 LPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE------ 203 (453)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC------
Confidence 5789999999999999998753 234688888888888743221 1 11 0 011111
Q ss_pred cccCHHHHHhhcc-CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCC
Q 018665 95 FLLDPKVLESKLT-EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 172 (352)
Q Consensus 95 ~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
+ .|++.+++.+. ++..+|++...+...|.. .+.++++++.++|+++ |+++|.||++. +.. +... .....
T Consensus 204 ~-nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~-g~llI~DEV~t-fr~-g~Gg-~~~~~---- 274 (453)
T PRK07046 204 F-NDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRY-GTLLVIDETHT-ISS-GPGG-YTRAH---- 274 (453)
T ss_pred C-CCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEEcccc-Ccc-CCcc-hhHHh----
Confidence 1 27899998885 467777777666555655 4567999999999999 99999999987 321 1111 11111
Q ss_pred CceEEEeccccccccccceeEEEEcChhHHHHHHhh---------hhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 173 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI---------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 173 ~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
+...-+.+++|.+| +|+++|.+++++++++.+... ....+++.|++..+++.+.++.-.. .+..+++.+
T Consensus 275 gv~PDi~t~gK~lg-gG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~-~~~~~~~~~ 352 (453)
T PRK07046 275 GLEPDFLVVGKPIA-GGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMT-EAAYAHMLA 352 (453)
T ss_pred CCCccceeehhhhc-CCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 11122556899998 889999999999999887531 1234677899999999999875221 233444444
Q ss_pred HHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCC---CChHHHHHHHHHccCEEeccCCCCCCCCe
Q 018665 244 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI---ENSESLCRYLLDKAQVALVPGDAFGDDTC 320 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~i~~g~~~~~~~~ 320 (352)
.-.+.++.+.+.+.+. ++.......|.++.+.+.............. .....+...++++ ||.+.|. .+.
T Consensus 353 ~g~~l~~~L~~l~~~~-~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~~-----~~~ 425 (453)
T PRK07046 353 LAARLAAGLRAVIARH-GLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNR-GVLITPF-----HNM 425 (453)
T ss_pred HHHHHHHHHHHHHHhC-CCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHC-CCEEecc-----cCc
Confidence 4444444444444444 3322211223333444321100000000000 0123566677765 9998763 246
Q ss_pred EEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 321 IRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
++++++.+++||+++++++.++++++
T Consensus 426 ~~~~p~~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 426 MLVCPATTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 78888889999999999999999865
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-17 Score=152.02 Aligned_cols=291 Identities=11% Similarity=0.068 Sum_probs=185.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhc------C--CCCEEEecCCCCCChHHH-HHhcCC------------eEEEecccCCCC
Q 018665 36 PDQILVSNGAKQSILQAVLAVC------S--PGDEVIIPAPFWVSYPEM-ARIADA------------TPVILPTRISEN 94 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~------~--~~~~vl~~~~~~~~~~~~-~~~~g~------------~v~~i~~~~~~~ 94 (352)
.+.+++++++++|++.+++... . ...+|+.....|++.... +...+. .+..+|.+....
T Consensus 107 ~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~ 186 (466)
T PRK07030 107 LSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYL 186 (466)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccc
Confidence 3689999999999999998752 1 235788888888776533 322221 122233221100
Q ss_pred --cc--------cCHHHHHhhcc---CCeeEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 95 --FL--------LDPKVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 95 --~~--------~d~~~l~~~l~---~~~~~i~i~~-p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.. -+++.+++.+. +++.++++.. .+...|. ..|++.+++|.++|+++ |+++|.||++.++..+|
T Consensus 187 ~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~-g~llI~DEV~TGfGRtG 265 (466)
T PRK07030 187 RPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRY-GVHLIHDEIAVGFGRTG 265 (466)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCcCccc
Confidence 00 12455666664 4677777776 4666676 45678999999999999 99999999999987766
Q ss_pred CCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHh-------hhhccccCCChHHHHHHHHHhccc
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~ 231 (352)
... ....... ..-+.+++|.+| +| +++|.+++++++.+.+.. .....+++.|++..+++.+.++.-
T Consensus 266 ~~~-a~~~~gv----~PDiv~~gKgl~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i 339 (466)
T PRK07030 266 TMF-ACEQAGI----RPDFLCLSKALT-GGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIF 339 (466)
T ss_pred cch-HHHhcCC----CCCEEeeehhcc-CCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 421 1111111 122556789998 88 499999999999887742 234566788999999999998762
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhcc---cCCceecCCCCceEEEeecCCccCCcccCCC-CCCChHHHHHHHHHccCE
Q 018665 232 YAGGEVVSKMVKAFRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG-KIENSESLCRYLLDKAQV 307 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi 307 (352)
.. + ++.++.++.-+++.+.|++ .+.+.-+. ..|.++.+++......+ ..+. .......+.+.++++ |+
T Consensus 340 ~~-~----~l~~~~~~~G~~l~~~L~~l~~~~~v~~vr-G~Gl~~gie~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-Gv 411 (466)
T PRK07030 340 EQ-D----NVIENNRALARRMAEATAHLADHPHVAEVR-QTGMILAIEMVQDKASK-TPYPWQERRGLKVYQHALER-GA 411 (466)
T ss_pred Hh-c----CHHHHHHHHHHHHHHHHHHHhcCCCEEEeE-eceeEEEEEeccCcccc-ccCcchhHHHHHHHHHHHHC-Ce
Confidence 11 2 2333444444444444433 34333333 34566666664311100 0000 000124677787865 99
Q ss_pred EeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 308 ALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.+. .+.+|+.++. +++|+++++++|.++++++
T Consensus 412 l~~~~-----g~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 412 LLRPL-----GSVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred EEEec-----CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 98763 2578998776 9999999999999999887
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.8e-18 Score=149.89 Aligned_cols=292 Identities=13% Similarity=0.108 Sum_probs=188.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-------CC-CCEEEecCCCCCChH-HHHHhcC-------------CeEEEecccCC-
Q 018665 36 PDQILVSNGAKQSILQAVLAVC-------SP-GDEVIIPAPFWVSYP-EMARIAD-------------ATPVILPTRIS- 92 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~-------~~-~~~vl~~~~~~~~~~-~~~~~~g-------------~~v~~i~~~~~- 92 (352)
-++|++++|||+|++.+++... ++ ..+++.-...|++-. .++...| ..+..++.+..
T Consensus 105 l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y 184 (449)
T COG0161 105 LDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAY 184 (449)
T ss_pred ccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCccc
Confidence 4789999999999999998742 12 234777677666432 2222211 22333333321
Q ss_pred -----CCcc----cCHHHHHhhcc----CCeeEEEEcCCCCC-cccCC-CHHHHHHHHHHHHhCCCEEEEeccccccccc
Q 018665 93 -----ENFL----LDPKVLESKLT----EKSRLLILCSPSNP-TGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 157 (352)
Q Consensus 93 -----~~~~----~d~~~l~~~l~----~~~~~i~i~~p~np-tG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~ 157 (352)
+.+. -..++|++.+. +++.++|+...... +|..+ |+..++++.++|++| |+++|.||+..+|+.
T Consensus 185 ~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky-~ILlI~DEV~tGFGR 263 (449)
T COG0161 185 RRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKY-GILLIADEVATGFGR 263 (449)
T ss_pred ccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHc-CcEEEeecceeCCCc
Confidence 1111 23566777664 34556666555544 77665 566899999999999 999999999999988
Q ss_pred CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh-----hhccccCCChHHHHHHHHHhcccC
Q 018665 158 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
+|+- +..- ..+...-+-+++|.++.+=+++|.+++++++.+.+... .+.++++.|+++.+++.+.|+.-.
T Consensus 264 TG~~---FA~e--~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e 338 (449)
T COG0161 264 TGKM---FACE--HAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILE 338 (449)
T ss_pred Cchh---hhhh--hcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHH
Confidence 7752 2211 11223336778899973447999999999999888654 345678899999999999887522
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 308 (352)
. +.++ ++.++.-.++.+.|++ .|.+.-+ ...|++..+++......+. -+ .......+.+.+.++ |+.
T Consensus 339 ~-e~l~----~~~~~~~~~l~~~L~~~l~~~p~VgdV-R~~Gli~~iElv~d~~t~~-~f-~~~~~~~~~~~~~e~-Gl~ 409 (449)
T COG0161 339 E-EDLL----ERVAEIGAYLQAGLQAALADHPLVGDV-RGLGLIGAIELVADKATKT-PF-EARVGARVRAAALER-GLL 409 (449)
T ss_pred h-cCHH----HHHHHHHHHHHHHHHHhcccCCcEEEe-eccceEEEEEEeccccccc-ch-hhhHHHHHHHHHHHC-CeE
Confidence 1 3333 4444455555555554 2233333 3456767777644321110 00 001256777777766 999
Q ss_pred eccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 309 LVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 309 i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
++|. .+.+-++++. ++++++++++++++++++..
T Consensus 410 iRp~-----g~~i~~~PPliit~~eid~l~~~l~~al~~~~ 445 (449)
T COG0161 410 IRPL-----GDVIYLMPPLIITREEIDELVDALREALDETL 445 (449)
T ss_pred Eeec-----CCEEEEcCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 9995 4477777776 99999999999999998754
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-17 Score=151.64 Aligned_cols=292 Identities=15% Similarity=0.098 Sum_probs=183.2
Q ss_pred cEEEe-CChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHh-cC------------CeEEEecccCCCC--c----
Q 018665 38 QILVS-NGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-AD------------ATPVILPTRISEN--F---- 95 (352)
Q Consensus 38 ~i~~~-~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~-~g------------~~v~~i~~~~~~~--~---- 95 (352)
.+++. ++|++|++.+++... ....+|+.....|++....... .+ ..+..++.+.... +
T Consensus 128 ~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 207 (464)
T PRK06938 128 KIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGG 207 (464)
T ss_pred eEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCch
Confidence 56554 799999999998753 2346788888778776533222 11 1233444432110 0
Q ss_pred ----ccCHHHHHhhccC------CeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 96 ----LLDPKVLESKLTE------KSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 96 ----~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
..+++.+++.+.+ ++.++++...+...|.. +|.+.++++.++|+++ |+++|.||++.+++.+|.. ..
T Consensus 208 ~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~-giLlI~DEV~tGfGRtG~~-~a 285 (464)
T PRK06938 208 EAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEA-GIPLIVDEIQSGFGRTGKM-FA 285 (464)
T ss_pred hhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcHH-HH
Confidence 0135677777752 46777777667666765 5688999999999999 9999999999998776642 11
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
.....- ..-+.+++|.+| +|+++|.+++++++ +.+.......+++.|++..+++.+.++.-. + +++.++
T Consensus 286 ~e~~gv----~PDiv~~gKglg-gG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~--~---~~l~~~ 354 (464)
T PRK06938 286 FEHAGI----IPDVVVLSKAIG-GSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIK--E---HRLAEH 354 (464)
T ss_pred HHhcCC----CCCEEEeecccc-CCCceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHH--H---hHHHHH
Confidence 111211 122566789998 88999999998774 544333455678899999999999987521 1 123334
Q ss_pred HHHHHHHHHHHhcc----cCCceecCCCCceEEEeecCCccCCc-ccCCCC--CCChHHHHHHHHHccCEEeccCCCCCC
Q 018665 245 FRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSE-AEGFGK--IENSESLCRYLLDKAQVALVPGDAFGD 317 (352)
Q Consensus 245 ~~~~~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~gi~i~~g~~~~~ 317 (352)
.+++-+++.+.|++ .|.+.-+ ...|.++.+++....... ..+... ......+.+.+.++ |+.+.+++. .
T Consensus 355 ~~~~G~~l~~~L~~l~~~~~~i~~V-rG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~g~--~ 430 (464)
T PRK06938 355 AAAMGERLREHLRQLQRDYPQLGDV-RGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRR-GLILELGGR--H 430 (464)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeee-eccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHC-CeEEeecCC--C
Confidence 44444444444443 3322222 344666667663211100 000000 00134677777765 999876432 2
Q ss_pred CCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 318 DTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 318 ~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.+|+.++. +++|++++++++.+++.++
T Consensus 431 ~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 461 (464)
T PRK06938 431 GSVVRFLPPLIITAEQIDEVAEIFAEAVAAA 461 (464)
T ss_pred CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 4789998776 9999999999999999764
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-17 Score=132.78 Aligned_cols=299 Identities=16% Similarity=0.198 Sum_probs=210.0
Q ss_pred hhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCccc
Q 018665 18 SFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 97 (352)
Q Consensus 18 ~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~ 97 (352)
.|.+.+++|++ -+.+-+|+|+.++=..++.+++++||-|++...+|....-++++.|.++..+|-.....+.+
T Consensus 65 ~F~~dlaeFlg-------~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i 137 (382)
T COG1103 65 DFLEDLAEFLG-------MDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKI 137 (382)
T ss_pred HHHHHHHHHhC-------CceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEe
Confidence 46699999984 78899999999999999999999999999999999888889999999999999655556788
Q ss_pred CHHHHHhhcc-------CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCC
Q 018665 98 DPKVLESKLT-------EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 170 (352)
Q Consensus 98 d~~~l~~~l~-------~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~ 170 (352)
+++...+.+. +.+.+.+++++...-|.+.+ .++++++|+++ +++++...+|.- |.-+.+......
T Consensus 138 ~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~-gvPlllN~AYt~----Grmpvs~ke~g~ 209 (382)
T COG1103 138 TPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREY-GVPLLLNCAYTV----GRMPVSGKEIGA 209 (382)
T ss_pred cHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHc-CCceEeecceee----ccccccccccCC
Confidence 9888777773 24678888999888899988 99999999999 999999999875 444455555544
Q ss_pred CCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh-hccc------cCCChHHHH--HHHHHhcccCCChHHHHHH
Q 018665 171 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-SQFT------SGASSISQK--AGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 171 ~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-~~~~------~~~~~~~~~--~~~~~l~~~~~~~~~~~~~ 241 (352)
+++++|-+|++. +.-++|.+..+.++.+..-+.. ..+. .+....+.- .+++.+-. -.+...+.
T Consensus 210 ----DFiVgSGHKsmA-As~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~---V~eRVkrW 281 (382)
T COG1103 210 ----DFIVGSGHKSMA-ASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPH---VVERVKRW 281 (382)
T ss_pred ----CEEEecCccchh-ccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHH---HHHHHHHH
Confidence 499999999997 5558999999999888765443 2121 222222222 22222211 01112222
Q ss_pred HHHHHHHHHHHHHHhcccCCceec--CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
-..+ +..+.+.+.|+++.|+..+ .|..-..+.++.|.......+.. ...-=+.++|.++.-+-|.|| ...
T Consensus 282 deEv-~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~---r~gyFlY~ELK~RgI~GI~~G----~Tk 353 (382)
T COG1103 282 DEEV-EKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHK---RKGYFLYEELKKRGIHGIQPG----QTK 353 (382)
T ss_pred HHHH-HHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCc---CCceeeHHHHHhcCccccccC----cee
Confidence 2222 2455788888888666665 33333444555553211000000 012236677777744456665 467
Q ss_pred eEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 320 CIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 320 ~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
++.+|+-. ++|+++..++.+++++++++
T Consensus 354 ~~K~svyGl~~Eqve~V~~afkeI~eky~ 382 (382)
T COG1103 354 YFKLSVYGLSWEQVEYVVDAFKEIAEKYG 382 (382)
T ss_pred EEEEEeecCCHHHHHHHHHHHHHHHHhcC
Confidence 89999877 99999999999999998753
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-17 Score=151.29 Aligned_cols=291 Identities=12% Similarity=0.149 Sum_probs=185.8
Q ss_pred CcEEEeCChHHHHHHHHHHhcC-------C-CCEEEecCCCCCChHHH-HHhcC------------CeEEEecccCCCC-
Q 018665 37 DQILVSNGAKQSILQAVLAVCS-------P-GDEVIIPAPFWVSYPEM-ARIAD------------ATPVILPTRISEN- 94 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~~-------~-~~~vl~~~~~~~~~~~~-~~~~g------------~~v~~i~~~~~~~- 94 (352)
+.+++++|+++|++.+++.... + ..+|+.....|++.... +...+ ..+..+|.+....
T Consensus 117 ~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~ 196 (460)
T PRK06916 117 KKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRS 196 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCccccc
Confidence 6899999999999999986431 2 36788888888875533 22211 1123333221000
Q ss_pred -c--------ccCHHHHHhhcc---CCeeEEEEcC-CCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 95 -F--------LLDPKVLESKLT---EKSRLLILCS-PSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 95 -~--------~~d~~~l~~~l~---~~~~~i~i~~-p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
+ ..+++.+++.++ +++.++++.. ++...|.. +|.+.++++.++|+++ |+++|.||++.+++..|.
T Consensus 197 ~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~TG~GRtG~ 275 (460)
T PRK06916 197 PYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKY-NVLFITDEVATGFGRTGK 275 (460)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHc-CCEEEeechhhCCCcCch
Confidence 0 013566667664 5778888877 46666765 5888999999999999 999999999998866664
Q ss_pred CccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHh-------hhhccccCCChHHHHHHHHHhcccC
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
. .........+| +.+++|.++ +| +++|.+++++++.+.+.. .....+++.|++..+++.+.++.-.
T Consensus 276 ~-~a~~~~gv~PD----iv~~gK~l~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~ 349 (460)
T PRK06916 276 M-FACEHENVTPD----IMTAGKGLT-GGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYE 349 (460)
T ss_pred h-hHHHhcCCCCC----eeeeehhhh-cCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 2 11111221112 456799998 78 599999999999887642 1234567789999999999887521
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCC-ChHHHHHHHHHccCEE
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVA 308 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~ 308 (352)
+ +.+.++++++-+++.+.|+++ +.+.-+. ..|.++-+++.+....+ +.+.... ....+.+.++++ |+.
T Consensus 350 --~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vr-G~Glm~giel~~~~~~~-~~~~~~~~~~~~i~~~~~~~-Gvl 421 (460)
T PRK06916 350 --K---TNLIEQVARKTEYVATQLEDLFALKHVGDIR-QLGLMVGIELVKNKETK-EPFEWTERVGVQVCKRSREL-GML 421 (460)
T ss_pred --h---ccHHHHHHHHHHHHHHHHHHhhcCCCeEEee-cCCceeeEEeecccccc-cCCCchhhHHHHHHHHHHHC-CeE
Confidence 1 223444555555555555543 3332223 33555556553211100 0000000 134677887865 999
Q ss_pred eccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 309 LVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 309 i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
+.+. .+.+|+.++. +++|+++++++|.++++++-
T Consensus 422 ~~~~-----g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 422 TRPL-----GNTIVFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred EEec-----CCEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 9773 2578888766 99999999999999998754
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=166.24 Aligned_cols=292 Identities=12% Similarity=0.112 Sum_probs=185.4
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHH-HHhcC------------CeEEEecccC--CCCcc-cC
Q 018665 37 DQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEM-ARIAD------------ATPVILPTRI--SENFL-LD 98 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~-~~~~g------------~~v~~i~~~~--~~~~~-~d 98 (352)
+.+++++||++|++.+++... ....+|+.....|++.... +...+ ..+..++.+. ...+. .+
T Consensus 681 ~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 760 (1013)
T PRK06148 681 TVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPD 760 (1013)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCCh
Confidence 689999999999999998753 2345788888877776532 21111 1121222110 00111 01
Q ss_pred -------HHHHHhhcc------CCeeEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 99 -------PKVLESKLT------EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 99 -------~~~l~~~l~------~~~~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
.+.+++.++ +++.++++.......|. ..|.+.++++.++|+++ |+++|.||++.+++..|.....
T Consensus 761 ~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~-g~llI~DEVqtGfGRtG~~~~a 839 (1013)
T PRK06148 761 AEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAA-GGVCIADEVQVGFGRVGSHWWA 839 (1013)
T ss_pred hhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEEecccCCCCCCCcchh
Confidence 123444332 35777777776665665 45788999999999999 9999999999998776642222
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh-hhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
+.... ...-+.+++|.+| +|.++|.+++++++++.+... ....+++.|+++.+++.+.++.-.. + ++.+
T Consensus 840 ~e~~g----v~PDivt~gK~lg-gG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~-e----~l~~ 909 (1013)
T PRK06148 840 FETQG----VVPDIVTMGKPIG-NGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIED-E----DLQR 909 (1013)
T ss_pred hhhcC----CCcceeeeccccc-CCcceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhh-c----cHHH
Confidence 22222 2233677899998 899999999999998877542 2346788999999999999885211 2 2333
Q ss_pred HHHHHHHHHHHHhc----ccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 244 AFRERRDFLVKSFG----ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 244 ~~~~~~~~l~~~l~----~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
+.+++-+++.+.|+ +.+.+.-+. ..|.++-+++.......... ......+.+.++++ ||.+.+.+. ..+
T Consensus 910 ~~~~~G~~l~~~L~~l~~~~~~i~~Vr-G~Gl~~gvel~~~~~~~~~~---~~~~~~i~~~~~~~-Gvl~~~~g~--~~~ 982 (1013)
T PRK06148 910 NALEIGNYLLAGLRELQDRFDIIGDVR-GMGLFLGIELVTDRKTKAPA---TAIARYVKNGARER-GILIGTEGP--HDN 982 (1013)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEe-eeceEEEEEecCCccccCcc---HHHHHHHHHHHHhC-CeEEeccCC--CCC
Confidence 34444444444443 343232233 34566666664211100000 00245677888865 999976422 257
Q ss_pred eEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 320 CIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 320 ~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+|+.++. +++++++++++|.+++.++
T Consensus 983 vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 983 VLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred EEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 88998876 9999999999999999865
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-18 Score=138.38 Aligned_cols=284 Identities=15% Similarity=0.130 Sum_probs=192.2
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 100 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~ 100 (352)
.+||++++ .++.++.+++-.|+..++.++..+.|.|+...-+|-+.++..+.+.. + . .+|+-
T Consensus 119 ~kiAqfh~-------rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLckr---y------~--h~dv~ 180 (417)
T KOG1359|consen 119 SKIAQFHG-------REDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLCKR---Y------R--HVDVF 180 (417)
T ss_pred HHHHHHhC-------CCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHHhh---h------c--cchhH
Confidence 77777763 55566666677777777777777777777777777777765554430 0 1 13444
Q ss_pred HHHhh----ccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 101 VLESK----LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 101 ~l~~~----l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
.++.. .+.+-++|+-....+..|.+.| +++|.+++++| |.++++||+|..+.+..........+....+.++
T Consensus 181 ~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP---l~ei~~La~kY-gaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdi 256 (417)
T KOG1359|consen 181 DLEHCLISACKMRLKLVVTDGVFSMDGDIAP---LEEISQLAKKY-GALLFIDECHATGFFGETGRGTAEEFGVMGDVDI 256 (417)
T ss_pred HHHHHHHHhhhheEEEEEecceeccCCCccc---HHHHHHHHHhc-CcEEEEeecccceeecCCCCChHHHhCCCCccee
Confidence 44443 3456677777778899999999 99999999999 9999999999976554443333333333345668
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHhhhhccccC--CChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG--ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
+.++++|++| |...||..++.+++..+++..+++-++ .++.....+.++++. --.-.......+.+++++++
T Consensus 257 insTLgKAlG--ga~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dl----lm~s~~~i~~~~a~~qrfr~ 330 (417)
T KOG1359|consen 257 INSTLGKALG--GASGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDL----LMVSSKEIQSRQANTQRFRE 330 (417)
T ss_pred hhhhhhhhhc--CCCCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHH----HHhhHHHHHHHHHHHHHHHH
Confidence 9999999985 445699999999999998776655443 333334444444442 11223445566778888888
Q ss_pred HhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC---CCeEEEEeec--CH
Q 018665 255 SFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SL 329 (352)
Q Consensus 255 ~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~---~~~iRi~~~~--~~ 329 (352)
.++.. |+++.... ..++-+.+.+. +.+.+.+++|+++ ||++..-+..-- ...+|+.++. ++
T Consensus 331 ~me~a-GftIsg~~-hPI~pv~lGda-----------~lA~~~ad~lLk~-Gi~Vigfs~PvVP~gkariRVqiSAaHt~ 396 (417)
T KOG1359|consen 331 FMEAA-GFTISGAS-HPICPVMLGDA-----------RLASKMADELLKR-GIYVIGFSYPVVPKGKARIRVQISAAHTE 396 (417)
T ss_pred HHHhc-CceecCCC-CCccceecccH-----------HHHHHHHHHHHhc-CceEEeecCCcCCCCceEEEEEEehhcCH
Confidence 88876 88886533 22233333322 1567889999988 898864332221 2357776665 99
Q ss_pred HHHHHHHHHHHHHHhhh
Q 018665 330 TTLQAAVERIKKGLLTL 346 (352)
Q Consensus 330 ~~l~~~~~~l~~~~~~~ 346 (352)
||++++++++.++.+.+
T Consensus 397 edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 397 EDIDRLIEAFSEVGRFL 413 (417)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988654
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-17 Score=151.20 Aligned_cols=279 Identities=13% Similarity=0.110 Sum_probs=181.6
Q ss_pred CcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHHHHH-hcCC-------------eEEEecccCC-C
Q 018665 37 DQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPEMAR-IADA-------------TPVILPTRIS-E 93 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~~~~-~~g~-------------~v~~i~~~~~-~ 93 (352)
+.++++++|++|++.+++.... ...+|+....+|++....+. ..+. .+..++.+.. .
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 185 (427)
T TIGR00508 106 DCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRF 185 (427)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccc
Confidence 6899999999999999886431 13578888888887643222 2121 1112222110 0
Q ss_pred --Cc-ccCHHHHHhhcc---CCeeEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 94 --NF-LLDPKVLESKLT---EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 94 --~~-~~d~~~l~~~l~---~~~~~i~i~~p-~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
.+ .-|++++++.+. ++.++|++... +...|. .+|.+++++|.++|+++ |+++|+||++.+++..|.....
T Consensus 186 ~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~-~~llI~DEv~tG~Gr~G~~~~~- 263 (427)
T TIGR00508 186 DEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQY-DILLIADEIATGFGRTGKLFAC- 263 (427)
T ss_pred cchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCccchh-
Confidence 00 124667777664 35667777664 555565 45788999999999999 9999999999887666542111
Q ss_pred ccCCCCCCceEEEeccccccccccc-eeEEEEcChhHHHHHHhhh-----hccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~-~~g~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....-.++ ++ +++|.++ +|+ +++.++.++++.+.+.... ...+++.|++..+++.++++.-.. .
T Consensus 264 ~~~~v~pD--i~--~~gK~l~-gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~-~---- 333 (427)
T TIGR00508 264 EHAGVVPD--IL--CVGKALT-GGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLE-G---- 333 (427)
T ss_pred hhcCCCCC--EE--Eechhhh-cCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh-C----
Confidence 11111112 33 4799997 784 8999999999988886421 234556789999999998874111 1
Q ss_pred HHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
+..++.+++.+++.+.|+++ +.+.-+. ..|.++.+.+.+. .....+.+.|+++ ||.+.+.
T Consensus 334 ~~~~~~~~~~~~l~~~L~~l~~~~~i~~vr-g~G~~~~i~~~~~-----------~~~~~~~~~l~~~-Gv~~~~~---- 396 (427)
T TIGR00508 334 EWQKQVSAIENQLKRELSPLRKNPVVKDVR-VLGAIGVVEMYKP-----------VNVEELQKKFVEQ-GVWIRPF---- 396 (427)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCEEeEe-ccccEEEEEECCc-----------cCHHHHHHHHHHC-CeEEEec----
Confidence 33455666666666666654 2222111 2255566666432 1567888888876 9998663
Q ss_pred CCCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 317 DDTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 317 ~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
...+|++++. +++||+++++++++++++
T Consensus 397 -~~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 397 -GKLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 2479998885 999999999999999864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=138.62 Aligned_cols=165 Identities=22% Similarity=0.215 Sum_probs=130.9
Q ss_pred hhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH-HHHHhcCCeEEEecccCCCCcc
Q 018665 18 SFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP-EMARIADATPVILPTRISENFL 96 (352)
Q Consensus 18 ~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~-~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
++.+.++++++ .+.+++.+++|+++++..++.++.+++++|+++.++|++.. ..++..|.+++.++.+......
T Consensus 4 ~~~~~l~~~~~-----~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 78 (170)
T cd01494 4 ELEEKLARLLQ-----PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGG 78 (170)
T ss_pred HHHHHHHHHcC-----CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCccc
Confidence 34499999985 46789999999999999999999888899999999999999 8899999999999987544333
Q ss_pred cCHHHHHhhc-cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 97 LDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 97 ~d~~~l~~~l-~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
.+.+.+++.. .++++++++++++|++|...| +++|.++|+++ |+++|+|++++.+...... .... ..+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~-~~~li~D~a~~~~~~~~~~----~~~~-~~~~d 149 (170)
T cd01494 79 LDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIAKEY-GILLLVDAASAGGASPAPG----VLIP-EGGAD 149 (170)
T ss_pred hhhhhhhhccccCceEEEEEecCcCCCCeEcC---HHHHHHHHHHc-CCEEEEecccccccccccc----cccc-cccCC
Confidence 3333554443 468899999999999999999 68999999999 9999999999976543211 1111 13456
Q ss_pred EEEeccccccccccceeEEEEcC
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGP 198 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~ 198 (352)
+++.|++|.+| + .+.|+++.+
T Consensus 150 ~~~~s~~K~~~-~-~~~G~l~~~ 170 (170)
T cd01494 150 VVTFSLHKNLG-G-EGGGVVIVK 170 (170)
T ss_pred EEEEEcccccC-C-CceEEEEeC
Confidence 88999999997 3 689998753
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-17 Score=140.27 Aligned_cols=296 Identities=15% Similarity=0.140 Sum_probs=190.2
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChH-HHHHhcCCeEEEecccCC-----
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYP-EMARIADATPVILPTRIS----- 92 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~-~~~~~~g~~v~~i~~~~~----- 92 (352)
+.++..+- -+-.-++++||+++|++.+++... ...-.|+....+|++.. ..+-..+......+++..
T Consensus 99 e~L~s~~P-----~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~ 173 (442)
T KOG1404|consen 99 EALVSKLP-----GDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVH 173 (442)
T ss_pred HHHHHhCC-----CCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCccc
Confidence 55555541 233569999999999999887742 22335666666666544 333333332222221110
Q ss_pred ---------CCcccC-----H----HHHHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEec
Q 018665 93 ---------ENFLLD-----P----KVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 93 ---------~~~~~d-----~----~~l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD 149 (352)
+-|+-+ - +++++.+. +.+.+.+....+...|.+ +|...+++..++|+++ |.++|.|
T Consensus 174 ~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~-Ggl~IaD 252 (442)
T KOG1404|consen 174 HTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKR-GGLFIAD 252 (442)
T ss_pred ccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHc-CCEEEeh
Confidence 111111 2 33333331 244556666667777866 6777999999999999 9999999
Q ss_pred ccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh-hccccCCChHHHHHHHHHh
Q 018665 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-SQFTSGASSISQKAGVAAL 228 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 228 (352)
|++++|+.+| ....+.. ++.+.-+-+++|.+| +|+++|.++..+++.+-+.+.. .+++++.+++..++..+.+
T Consensus 253 EVqtGfGRtG-~~wgfe~----h~v~PDIvTmAKgiG-nG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL 326 (442)
T KOG1404|consen 253 EVQTGFGRTG-HMWGFES----HGVVPDIVTMAKGIG-NGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVL 326 (442)
T ss_pred hhhhcccccc-ccccccc----cCCCccHHHHHhhcc-CCCcceeeecCHHHHHHHHhccccccccCCCchhHHHHHHHH
Confidence 9999998887 3344443 355566899999999 8999999999999999888765 7888999999999999999
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHhccc-CCceec--CCCCceEEEeecCCccCC-cccCCCCCCChHHHHHHHHHc
Q 018665 229 GLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-EGVKMS--EPQGAFYLFIDFSTYYGS-EAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~g~~~~--~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 304 (352)
+.. .-+++.++....-.+|.+.|.++ ++..++ ....|.++-+++-+...+ ...-+ .....+.+.+.+.
T Consensus 327 ~Vi-----kee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~---~~~~~i~~~cke~ 398 (442)
T KOG1404|consen 327 KVI-----KEENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPAT---AEGAVIGEQCKEL 398 (442)
T ss_pred HHH-----HHHhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcch---HHHHHHHHHHHHh
Confidence 862 22334444555556666666554 122222 123455565655332110 00000 0345677777754
Q ss_pred cCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHH
Q 018665 305 AQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERI 339 (352)
Q Consensus 305 ~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l 339 (352)
|+.+.-|+.++. .+||+++. |.||++.+++..
T Consensus 399 -Gvlvg~g~i~G~--vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 399 -GVLVGKGGIHGN--VFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred -Ceeeecccccce--EEEecCCeeccHHHHHHHHHHH
Confidence 999977666644 99999887 999997777644
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-17 Score=163.02 Aligned_cols=292 Identities=15% Similarity=0.139 Sum_probs=181.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHH-HhcC-----C--------eEEEecccCCC--Ccc-
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMA-RIAD-----A--------TPVILPTRISE--NFL- 96 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~-~~~g-----~--------~v~~i~~~~~~--~~~- 96 (352)
.+.+++++||++|++.+++... ....+|+.....|++..... ...+ . .+..++.+... .+.
T Consensus 641 ~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~ 720 (972)
T PRK06149 641 LDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRG 720 (972)
T ss_pred cCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCC
Confidence 3689999999999999998532 22356777777777644222 1100 0 12223322110 111
Q ss_pred cC-----HHHHHhhc------cCCeeEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 97 LD-----PKVLESKL------TEKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 97 ~d-----~~~l~~~l------~~~~~~i~i~~p~nptG-~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
.+ .+.+++.+ .+++.++++.......| ..+|++.++++.++|++| |+++|+||++.+++..|.....
T Consensus 721 ~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~-g~llI~DEV~tGfGRtG~~~~a 799 (972)
T PRK06149 721 ADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRAR-GGVCIADEVQVGYGRLGHYFWG 799 (972)
T ss_pred cccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEEeehhcCCccCccchh
Confidence 11 13333322 13566777766665555 556788999999999999 9999999999988776643222
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh-hhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
+...... .-+.+++|.+| +|.++|++++++++.+.+... ....+++.|++..+++.+.|+.-. ++ ++.+
T Consensus 800 ~e~~gv~----PDivt~gK~lg-~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~--~e---~l~~ 869 (972)
T PRK06149 800 FEQQGVV----PDIITMAKGMG-NGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLR--EE---KLQE 869 (972)
T ss_pred hhhcCCC----CCEEEeccccc-CCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHH--hc---CHHH
Confidence 2222221 22457899998 889999999999998887641 223456789999999999987521 11 2333
Q ss_pred HHHHHHHHHHHHhc----ccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 244 AFRERRDFLVKSFG----ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 244 ~~~~~~~~l~~~l~----~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
+.+++-+++.+.|+ +.|.+..+. ..|.++.+++.......... ......+.+.++++ ||.+.+.+. ..+
T Consensus 870 ~~~~~G~~l~~~L~~l~~~~~~i~~vr-G~Gl~~gvel~~~~~~~~~~---~~~~~~i~~~l~~~-Gvl~~~~g~--~~~ 942 (972)
T PRK06149 870 NARRVGDHLKARLEALADRHPLIGAVH-GMGLYLGVELVRDRQTLEPA---TEETAAICDRLLEL-GVIMQPTGD--HLN 942 (972)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEe-ecceEEEEEEecCcccCCCC---hHHHHHHHHHHHhC-CeEEeecCC--CCC
Confidence 44444444444444 343333333 34555666653211000000 00245788888876 999977431 147
Q ss_pred eEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 320 CIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 320 ~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
.+|+.++. +++++++++++|.+++.+
T Consensus 943 vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 943 ILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 89998885 999999999999999875
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-17 Score=150.68 Aligned_cols=324 Identities=12% Similarity=0.069 Sum_probs=210.2
Q ss_pred CCCCCChhhhccchhhHHHHHHHH-hcCCCCC-----CCcEEEeCChHHHHHHHHHHhcC-----------CCCEEEecC
Q 018665 5 RVSQGTLQMRVLWSFVQQFVINLK-ENGLSYT-----PDQILVSNGAKQSILQAVLAVCS-----------PGDEVIIPA 67 (352)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~-----~~~i~~~~g~~~a~~~~~~~l~~-----------~~~~vl~~~ 67 (352)
...+...+++ +.+-+++. -.|.+-. ...-.+|+|+|+++..++.+... +.-.|++.+
T Consensus 115 ~~sp~~~~lE------~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~ 188 (490)
T PLN02880 115 ITSPAATELE------MIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASD 188 (490)
T ss_pred ccCcccHHHH------HHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcC
Confidence 3445666777 77777777 5565421 12357789999998877766421 112455677
Q ss_pred CCCCChHHHHHhcCCe---EEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHH
Q 018665 68 PFWVSYPEMARIADAT---PVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIV 138 (352)
Q Consensus 68 ~~~~~~~~~~~~~g~~---v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~ 138 (352)
-.|.++..++...|+. ++.||++..+++.+|++.|++++.+ .+.+|+.+..+..+|.+.| +++|+++|
T Consensus 189 ~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~ 265 (490)
T PLN02880 189 QTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIA 265 (490)
T ss_pred CchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHH
Confidence 8899999999999984 7889987655678999999999953 2445555566789999999 99999999
Q ss_pred HhCCCEEEEecccccccccCCCCc-cccccCCCCCCceEEEeccccccccccceeEEEEcChh--HHHHHHhhhhcc---
Q 018665 139 AKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAACNKIQSQF--- 212 (352)
Q Consensus 139 ~~~~~~~livD~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~--~~~~~~~~~~~~--- 212 (352)
+++ |++++||.+|+++...-... ..+..+ ..-+.+..++||+++ ....+|+++.++. +++.+.....+-
T Consensus 266 ~~~-~iwlHVDaA~gg~~~~~~~~~~~l~gi---e~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~ 340 (490)
T PLN02880 266 KSN-GMWFHVDAAYAGSACICPEYRHYIDGV---EEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQSLSTNPEFLKNK 340 (490)
T ss_pred HHc-CCEEEEehhhHHHHHhCHHHHHHhcCc---hhcCEEEECchhhcC-CCccEEEEEEeCHHHHHHHHccCHHHhcCc
Confidence 999 99999999999864321100 012221 123478889999996 6678898887542 223221111000
Q ss_pred ----c-------c---CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecC
Q 018665 213 ----T-------S---GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 278 (352)
Q Consensus 213 ----~-------~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~ 278 (352)
. + ....+....+...+.. .+.+.+++...+.-++.+++.+.+++.++++++.+.....+.++++
T Consensus 341 ~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~--~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~ 418 (490)
T PLN02880 341 ASQANSVVDYKDWQIPLGRRFRSLKLWMVLRL--YGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLV 418 (490)
T ss_pred cccccCCCChhccCcCCCCcccHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEe
Confidence 0 0 0011111112112222 2356777777777789999999999888999887655555666665
Q ss_pred CccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec---CHHHHHHHHHHHHHHHhhhCC
Q 018665 279 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~~~ 348 (352)
..... .... ..-..++.++|.+++.+.+... ......++|+++.. ++++++.+++.|.+..+++..
T Consensus 419 ~~~~~-~~~~--~~~n~~l~~~l~~~g~~~v~~t-~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~ 487 (490)
T PLN02880 419 PPKNN-EDNG--NKLNHDLLDAVNSSGKIFISHT-VLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLG 487 (490)
T ss_pred CCCCC-hhhH--HHHHHHHHHHHHhCCCEEEEEE-EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 32100 0000 0012457777777766666553 33446799999876 669999999999998877644
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-17 Score=155.02 Aligned_cols=232 Identities=12% Similarity=0.077 Sum_probs=156.8
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEE
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~ 85 (352)
|..-..+.+ +..|+.++ .....++++|+|.++..++.+++++||+|+++..||.+..+++...|..++
T Consensus 203 p~G~I~eAq------~~aA~~fg------A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pv 270 (755)
T PRK15029 203 HTGAFGESE------KYAARVFG------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPV 270 (755)
T ss_pred CCcHHHHHH------HHHHHHhC------CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEE
Confidence 444455677 88899887 678899999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCc----ccC-----HHHHHhhccC--Cee--------EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEE
Q 018665 86 ILPTRISENF----LLD-----PKVLESKLTE--KSR--------LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146 (352)
Q Consensus 86 ~i~~~~~~~~----~~d-----~~~l~~~l~~--~~~--------~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~l 146 (352)
+++... ..+ .++ ++.++++++. ..+ ++++++|++ .|.+.+ +++|+++|+++ ++++
T Consensus 271 yl~P~~-~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~-~~~l 344 (755)
T PRK15029 271 YMVPSR-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKT-SDRL 344 (755)
T ss_pred Eecccc-cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhc-CCeE
Confidence 997543 222 234 8899988853 223 888899876 689999 99999999999 9999
Q ss_pred Eeccccccc-ccCCCCcc-ccccC---CCCCCceEEEeccccccccccce-eEEEEcChh--HH--HHHHhh-hhccccC
Q 018665 147 LSDEIYEHI-IYAPATHT-SFASL---PGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKH--FV--AACNKI-QSQFTSG 215 (352)
Q Consensus 147 ivD~~~~~~-~~~~~~~~-~~~~~---~~~~~~~i~~~s~sK~~g~~g~~-~g~l~~~~~--~~--~~~~~~-~~~~~~~ 215 (352)
++||||+.. .|.+..+. +.... ......++++.|.||.++ ++. .+++-.+.+ .+ ++++.. ....+.+
T Consensus 345 lvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~--alTQaS~LHv~~~~~~id~~r~~~~l~~~qSTS 422 (755)
T PRK15029 345 HFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN--ALSQASYIHVREGRGAINFSRFNQAYMMHATTS 422 (755)
T ss_pred EEECccccccccCccccccccccccccccCCCceEEEEchhhccc--chhhhhhheeCCCccccCHHHHHHHHHHHcCCC
Confidence 999999853 22221111 11100 101123499999999984 444 444444322 22 344433 3334455
Q ss_pred CChHHHHHHHHHhcccCCChH-HHHHHHHHHHHHHHHHHHHhcccC
Q 018665 216 ASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELE 260 (352)
Q Consensus 216 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~ 260 (352)
||.+.++.+-.+... ... ..+++.+.+.+....+++.+.+++
T Consensus 423 PSY~LmASLD~ar~~---m~~~~G~~l~~~~i~~~~~~r~~l~~~~ 465 (755)
T PRK15029 423 PLYAICASNDVAVSM---MDGNSGLSLTQEVIDEAVDFRQAMARLY 465 (755)
T ss_pred cHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 666655555444432 121 334455555555666666665543
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-16 Score=147.13 Aligned_cols=296 Identities=15% Similarity=0.116 Sum_probs=180.3
Q ss_pred cEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHh-cC------------CeEEEecccCCCC--cc----
Q 018665 38 QILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-AD------------ATPVILPTRISEN--FL---- 96 (352)
Q Consensus 38 ~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~-~g------------~~v~~i~~~~~~~--~~---- 96 (352)
.+++++|+++|++.+++... ...++|+.....|++....+.. .+ ..+..+|.+.... +.
T Consensus 123 ~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (459)
T PRK06931 123 LQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGE 202 (459)
T ss_pred EEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCch
Confidence 34677999999999998742 2346788888888877644332 11 1233333331100 00
Q ss_pred cCHHHH----Hhhcc------CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 97 LDPKVL----ESKLT------EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 97 ~d~~~l----~~~l~------~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
-+.+.+ ++.++ +++.++++...+...|.. .|.+.++++.++|+++ |+++|.||++.++..+|.. ...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~-g~LlI~DEV~tGfGRtG~~-~a~ 280 (459)
T PRK06931 203 AGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKH-GILLIVDEVQAGFARTGKM-FAF 280 (459)
T ss_pred hHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecchhcCCcCchH-HHh
Confidence 122222 22222 246777777766666765 5788999999999999 9999999999998776642 222
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 245 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (352)
....- ..-+.+++|.+| +|+++|.++.++++ +.+.......+++.|+++.+++.+.++.-.. ++..++..+.-
T Consensus 281 ~~~gv----~PDivt~gK~l~-gG~Pi~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~-~~l~~~~~~~G 353 (459)
T PRK06931 281 EHAGI----EPDIIVMSKAVG-GGLPLAVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKE-ENLAQNAAERG 353 (459)
T ss_pred hhcCC----CCCEEEeccccc-CCcceeeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 22221 122666789998 78999998887664 6554344556788999999999999875211 22333333333
Q ss_pred HHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCC-cccCCCC--CCChHHHHHHHHHccCEEeccCCCCCCCCeEE
Q 018665 246 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGK--IENSESLCRYLLDKAQVALVPGDAFGDDTCIR 322 (352)
Q Consensus 246 ~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iR 322 (352)
...++.|.+..++.|.+.-+. ..|.++.+++.+.... ...+... ......+.+.++++ |+.+.+... ..+.+|
T Consensus 354 ~~l~~~L~~l~~~~~~i~~vr-G~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~~--~~~~l~ 429 (459)
T PRK06931 354 EWLKAQLAELQKRYPCIGNVR-GRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFEN-GLLLERGGR--NGNVVR 429 (459)
T ss_pred HHHHHHHHHHHHhCCCeEeEe-cCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHC-CcEEeecCC--CCCEEE
Confidence 333444443333443333333 3455566666321100 0000000 00134577777765 899876432 257889
Q ss_pred EEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 323 ISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 323 i~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+.++. +++|+++++++|.+++.++
T Consensus 430 ~~Ppl~it~~eid~~~~~l~~~l~~~ 455 (459)
T PRK06931 430 LLPPLLITQAECEEFIDRFEQALLAA 455 (459)
T ss_pred EECCCCcCHHHHHHHHHHHHHHHHHH
Confidence 88876 9999999999999999765
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=153.80 Aligned_cols=240 Identities=20% Similarity=0.226 Sum_probs=158.0
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEE
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~ 85 (352)
|..-..+.+ +.+|+.++ ..+..++++|+|.++..++.+++++||+|+++..+|.+...++...|..++
T Consensus 64 p~G~I~eAe------~~aA~~fG------Ad~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pv 131 (417)
T PF01276_consen 64 PEGIIKEAE------ELAARAFG------ADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPV 131 (417)
T ss_dssp TBTHHHHHH------HHHHHHHT------ESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEE
T ss_pred CccHHHHHH------HHHHHhcC------CCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEE
Confidence 333445677 88999987 678899999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCc----ccCH-----HHHHhhccC--C---eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 86 ILPTRISENF----LLDP-----KVLESKLTE--K---SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 86 ~i~~~~~~~~----~~d~-----~~l~~~l~~--~---~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
+++.. ...+ .+++ +.+++++++ . ++++++++|++ .|.+.+ +++|+++|+++ +++|+||||
T Consensus 132 yi~p~-~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~-~~~llvDEA 205 (417)
T PF01276_consen 132 YIPPE-DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKH-GIPLLVDEA 205 (417)
T ss_dssp EEEEE-E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCT-ECEEEEE-T
T ss_pred EecCC-ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhccc-CCEEEEEcc
Confidence 99876 3322 3566 889888863 3 34589999976 689999 99999999999 999999999
Q ss_pred cccc-ccCCCCccccccCCCC---CCceEEEeccccccccccceeEEEEcChhH---HHHHHhh-hhccccCCChHHHHH
Q 018665 152 YEHI-IYAPATHTSFASLPGM---WERTLTVNGFSKAFAMTGWRLGYIAGPKHF---VAACNKI-QSQFTSGASSISQKA 223 (352)
Q Consensus 152 ~~~~-~~~~~~~~~~~~~~~~---~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~ 223 (352)
|+.. .|. ..+.+...+..+ .+.++++.|.+|.++ +=...+++..+.+. .++++.. ....+.+||.+.++.
T Consensus 206 hGah~~F~-~lp~~a~~~gad~~~~~~~~vvqS~HKtL~-altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmAS 283 (417)
T PF01276_consen 206 HGAHFGFH-PLPRSALALGADRPNDPGIIVVQSTHKTLP-ALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMAS 283 (417)
T ss_dssp T-TTGGCS-GGGTTCSSTTSS-CTSBEEEEEEEHHHHSS-S-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHH
T ss_pred ccccccCC-CCccchhhccCccccccceeeeechhhccc-ccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHH
Confidence 9853 222 222233333222 346699999999984 32345666544432 3444443 334455677766666
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHHHHHHHHHh---cccCCceecCC
Q 018665 224 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF---GELEGVKMSEP 267 (352)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~g~~~~~~ 267 (352)
+-.+... +....-+++.++..++...+++.+ +++.++++..+
T Consensus 284 lD~a~~~--m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~ 328 (417)
T PF01276_consen 284 LDVARAQ--MEEEEGRELLEEAIELAEEFRKKINRLNDIWGFKVLGP 328 (417)
T ss_dssp HHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-
T ss_pred HHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHHhcCCCceEecCCc
Confidence 5555443 112334455555555666666666 55556665533
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-17 Score=143.89 Aligned_cols=267 Identities=16% Similarity=0.127 Sum_probs=167.9
Q ss_pred CChHHHHHHHHHHhcCCCCEEEecCCCCCChHH---HH-------HhcCCeEEEecccCCCCcccCHHHHHhhcc-CCee
Q 018665 43 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE---MA-------RIADATPVILPTRISENFLLDPKVLESKLT-EKSR 111 (352)
Q Consensus 43 ~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~---~~-------~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~-~~~~ 111 (352)
-|++.|+..++.+|+++||+|+..+..+.++.. .. .....+++.+++++ ++..+|.|++++.++ .+|+
T Consensus 93 ~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~-~~~~ID~d~l~~~a~~~kPk 171 (399)
T PF00464_consen 93 HSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDP-DTGLIDYDELEKLAKEHKPK 171 (399)
T ss_dssp SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-T-TTSSB-HHHHHHHHHHH--S
T ss_pred CCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeec-CCCeECHHHHHHHHhhcCCC
Confidence 567789999999999999999988876655542 11 22456788888875 345799999999886 4899
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCCCccccccCCCCCCceEEEeccccccccccc
Q 018665 112 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 190 (352)
Q Consensus 112 ~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~ 190 (352)
+|++....+| ..+| ++++.++|++. |.++++|.+|. ++...|..+.++.. . +++++|.+|+| +|.
T Consensus 172 lIi~G~S~y~--~~~d---~~~~reIad~v-ga~l~~D~sH~~GLIa~g~~~~P~~~-A-----Dvvt~sThKtl--~GP 237 (399)
T PF00464_consen 172 LIICGASSYP--RPID---FKRFREIADEV-GAYLMADISHIAGLIAGGLFPNPFPY-A-----DVVTGSTHKTL--RGP 237 (399)
T ss_dssp EEEEE-SSTS--S------HHHHHHHHHHT-T-EEEEE-TTTHHHHHTTSS--GCCT-S-----SEEEEESSGGG---SS
T ss_pred EEEECchhcc--CccC---HHHHHHHHHhc-CcEEEecccccccceehheecCcccc-c-----eEEEeeccccc--ccc
Confidence 9887665544 3445 89999999999 99999999987 34444444444432 2 29999999998 788
Q ss_pred eeEEEEcC--------------hhHHHHHHhhhhcccc-CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHH
Q 018665 191 RLGYIAGP--------------KHFVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 255 (352)
Q Consensus 191 ~~g~l~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 255 (352)
|.|.|+++ +++.+++.+..-+... ++..-..++.+.++... ....+.+-.+++-++.+.|.+.
T Consensus 238 rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea--~~~~fk~Ya~qVv~NAk~La~~ 315 (399)
T PF00464_consen 238 RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEA--LSPEFKEYAKQVVKNAKALAEA 315 (399)
T ss_dssp S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 7788888765433332 23333344444444431 1344577788888999999999
Q ss_pred hcccCCceecC-CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-----CCCeEEEEeec--
Q 018665 256 FGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYAA-- 327 (352)
Q Consensus 256 l~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-----~~~~iRi~~~~-- 327 (352)
|.+. |+.++. ......+++++.... .++.+..+.|. +.||.+......+ .+..+||....
T Consensus 316 L~~~-G~~v~~ggTd~H~vlvd~~~~~----------~~g~~a~~~Le-~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT 383 (399)
T PF00464_consen 316 LQER-GFKVVTGGTDNHQVLVDLRSFG----------IDGKEAEKALE-EAGIIVNKNTIPGDRSPFVPSGLRLGTPALT 383 (399)
T ss_dssp HHHT-T-EEGGGS-SSSEEEEEGGGGT----------S-HHHHHHHHH-HTTEE-EEE--TTTSTTTT-SEEEEESHHHH
T ss_pred HhhC-CcEEEECCCCCCeEEEEecccc----------cchHHHHHHHH-hcCeeecccccCCCCCCCCCCEEEECCHHHH
Confidence 9987 998874 344566888886531 15566655555 5699886443322 24579999865
Q ss_pred ----CHHHHHHHHHH
Q 018665 328 ----SLTTLQAAVER 338 (352)
Q Consensus 328 ----~~~~l~~~~~~ 338 (352)
.++|+++..+.
T Consensus 384 ~rG~~e~dm~~iA~~ 398 (399)
T PF00464_consen 384 RRGMKEEDMKEIAEL 398 (399)
T ss_dssp HTT--HHHHHHHHHH
T ss_pred hCCCCHHHHHHHHhh
Confidence 55677666554
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-16 Score=146.20 Aligned_cols=291 Identities=18% Similarity=0.154 Sum_probs=189.6
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC------hHHHHHhcCCeEEEecccCC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS------YPEMARIADATPVILPTRIS 92 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~------~~~~~~~~g~~v~~i~~~~~ 92 (352)
+++.+|++++ .+..++++++++|+..++.++ .+||+|++++..+.. +...++..|+++++++...
T Consensus 132 ~e~~lA~l~G-------ae~a~vv~sgtaAl~l~l~~l-~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~- 202 (464)
T PRK04311 132 LAALLCALTG-------AEDALVVNNNAAAVLLALNAL-AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN- 202 (464)
T ss_pred HHHHHHHHhC-------CCeEEEECCHHHHHHHHHHHh-CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC-
Confidence 3488888875 456788899999999888665 788999998864431 2346678899999997542
Q ss_pred CCcccCHHHHHhhccCCeeEEEEcCCCCC--cc--cCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC----CCccc
Q 018665 93 ENFLLDPKVLESKLTEKSRLLILCSPSNP--TG--SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP----ATHTS 164 (352)
Q Consensus 93 ~~~~~d~~~l~~~l~~~~~~i~i~~p~np--tG--~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~----~~~~~ 164 (352)
..++++++++++++++++++++++|+ +| ...| +++|+++|+++ |+++|+|.+.+.+.-.+ ...+.
T Consensus 203 ---~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~d---l~eI~~lak~~-gi~vivD~gsG~l~~~~~~gl~~~p~ 275 (464)
T PRK04311 203 ---RTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVS---LAELAALGKEH-GLPVVYDLGSGSLVDLSQYGLPDEPT 275 (464)
T ss_pred ---CCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCC---HHHHHHHHHHc-CCeEEEECCCcccccchhccCCCCCc
Confidence 24789999999999999999999997 34 5678 99999999999 99999999644321000 00111
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCCh---------
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG--------- 235 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 235 (352)
+... ...+.++++.|.+|.+|.+ ..|++++++++++++++...............+..+.+.......
T Consensus 276 ~~~~-l~~GaDiv~fSg~K~LgGp--~~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l 352 (464)
T PRK04311 276 VQEL-LAAGVDLVTFSGDKLLGGP--QAGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTL 352 (464)
T ss_pred hhhH-HhcCCcEEEecCcccccCC--ceEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHH
Confidence 1111 1135569999999998623 589999999999887743222223344445555555554211000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccC--C--ceecCC----------C---CceEEEeecCCccCCcccCCCCCCChHHHH
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELE--G--VKMSEP----------Q---GAFYLFIDFSTYYGSEAEGFGKIENSESLC 298 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~--g--~~~~~~----------~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
..+....++..++.+.+.+.|+..+ + +.+... . .++.+.++... .++.++.
T Consensus 353 ~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~------------~~~~~l~ 420 (464)
T PRK04311 353 RLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKD------------RSLEALA 420 (464)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCC------------CCHHHHH
Confidence 1122233556667777888887653 2 233322 0 12223333221 1678898
Q ss_pred HHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHh
Q 018665 299 RYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 299 ~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~ 344 (352)
++|.+. ...|... -.++.+.+.+-. .++|++.+++.|++++.
T Consensus 421 ~~lr~~-~~~i~~r---~~~~~~~ld~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 421 ARLRLL-PPPVIGR---IEDGRLLLDLRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred HHHhcC-CCCEEEE---EECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence 888753 3333321 247788888877 88999999999988764
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-16 Score=146.96 Aligned_cols=324 Identities=12% Similarity=0.065 Sum_probs=212.7
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCC-----CCcEEEeCChHHHHHHHHHHhcC-----------CCCEEEec
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYT-----PDQILVSNGAKQSILQAVLAVCS-----------PGDEVIIP 66 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~-----~~~i~~~~g~~~a~~~~~~~l~~-----------~~~~vl~~ 66 (352)
|...+...+++ +.+-+++. -.|.+-. ...=.+++|+|+++..++.+... +.-.|++.
T Consensus 162 ~~~sPa~t~lE------~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S 235 (539)
T PLN02590 162 WLTSPAATELE------IIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGS 235 (539)
T ss_pred cccCchhHHHH------HHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEec
Confidence 44566677777 88888888 6666522 13356689999998877766422 11145566
Q ss_pred CCCCCChHHHHHhcCC---eEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHH
Q 018665 67 APFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARI 137 (352)
Q Consensus 67 ~~~~~~~~~~~~~~g~---~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~ 137 (352)
+..|.++..+++..|+ +++.+|++..+++.+|++.|++++.+ .+.+|+.+..+..+|.+-| +++|+++
T Consensus 236 ~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp---l~~Ia~i 312 (539)
T PLN02590 236 DQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP---LVPLGNI 312 (539)
T ss_pred CCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC---HHHHHHH
Confidence 7789999999999998 58899987555678999999999954 2445555556788999999 9999999
Q ss_pred HHhCCCEEEEecccccccccCCCCccc-cccCCCCCCceEEEeccccccccccceeEEEEcChh--HHHHHHhhhhc---
Q 018665 138 VAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAACNKIQSQ--- 211 (352)
Q Consensus 138 ~~~~~~~~livD~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~--~~~~~~~~~~~--- 211 (352)
|+++ |+++.||.+|+++...-..... +..+ ..-+-+..++||++. ....+|.++..+. +.+.+.....+
T Consensus 313 ~~~~-g~WlHVDaA~GG~al~~~~~r~~~~Gi---e~ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~a~~~~~~YL~~ 387 (539)
T PLN02590 313 AKKY-GIWLHVDAAYAGNACICPEYRKFIDGI---ENADSFNMNAHKWLF-ANQTCSPLWVKDRYSLIDALKTNPEYLEF 387 (539)
T ss_pred HHHh-CCeEEEecchhhhhhcChhhHHHhcCC---ccCCEEEECchhhcC-cCcCEEEEEecCHHHHHHHhhcCHHHhCC
Confidence 9999 9999999999986532111111 1111 122366788999997 6678888876543 33333211000
Q ss_pred -------------cccCC-ChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeec
Q 018665 212 -------------FTSGA-SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 277 (352)
Q Consensus 212 -------------~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~ 277 (352)
++... -.+....+..++.. .+.+.+++.+++.-++.+++.+.+++.|+++++.+..-..+.+++
T Consensus 388 ~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~--~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~ 465 (539)
T PLN02590 388 KVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRL--YGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRL 465 (539)
T ss_pred cccccccCCCccccCCCCCCchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEe
Confidence 01111 11222222222222 246788889999999999999999999899988765544455554
Q ss_pred CCc-cCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec---CHHHHHHHHHHHHHHHhhhCC
Q 018665 278 STY-YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 278 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~~~ 348 (352)
... .+.... ..-..++.++|.+...+.+.+ +......++|+++.. ++++++.+++.|.+..+++.+
T Consensus 466 ~~~~~~~~~~----~~ln~~l~~~l~~~G~~~vs~-t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~ 535 (539)
T PLN02590 466 APVDGDEDQC----NERNRELLAAVNSTGKIFISH-TALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTR 535 (539)
T ss_pred cCCCCCHHHH----HHHHHHHHHHHHhCCCEEEEe-eEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 321 000000 002346777777765555544 333345689999876 789999999999998877654
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-16 Score=135.27 Aligned_cols=282 Identities=15% Similarity=0.104 Sum_probs=192.0
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH---HhcC--CeEEEecccCCCCcccCHHHHHhhcc-
Q 018665 34 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA---RIAD--ATPVILPTRISENFLLDPKVLESKLT- 107 (352)
Q Consensus 34 ~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~---~~~g--~~v~~i~~~~~~~~~~d~~~l~~~l~- 107 (352)
.+..++...+|+ .|+..++.+++++||+|+-.+-.+.++...- -..| ++++.++++. ++..+|.|++++...
T Consensus 87 a~~anVQPhSGs-~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~-et~~IDyD~~~k~a~e 164 (413)
T COG0112 87 AEYANVQPHSGS-QANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDP-ETGLIDYDEVEKLAKE 164 (413)
T ss_pred CCccccCCCCch-HHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEeccccc-ccCccCHHHHHHHHHH
Confidence 455677666655 6788899999999999997776666555322 1122 5777788875 345699999999886
Q ss_pred CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCCCccccccCCCCCCceEEEeccccccc
Q 018665 108 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 186 (352)
Q Consensus 108 ~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 186 (352)
.+|++|+.-...+| ...| ++++.++|++- |.++++|-+|- ++...|..+.++.. -.++++|.+|+|
T Consensus 165 ~kPK~ii~G~SaY~--r~id---~~~~reIad~V-GA~L~~DmAHiaGLVA~G~~p~P~~~------AdvVTtTTHKTl- 231 (413)
T COG0112 165 VKPKLIIAGGSAYS--RPID---FKRFREIADEV-GAYLMVDMAHVAGLIAGGVHPNPLPH------ADVVTTTTHKTL- 231 (413)
T ss_pred hCCCEEEECccccc--cccC---HHHHHHHHHHh-CceEEehHHHHHHHHhcccCCCCCCc------cceEeCCcccCC-
Confidence 48898886444333 4556 88999999999 99999999987 34444443334332 339999999998
Q ss_pred cccceeEEEEcCh-hHHHHHHhhhhccccCCChH-HHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCcee
Q 018665 187 MTGWRLGYIAGPK-HFVAACNKIQSQFTSGASSI-SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 264 (352)
Q Consensus 187 ~~g~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 264 (352)
.|.|.|.|.++. ++.+++.+..-+...+.+.+ ..++.+-++.. .....+++-.+++-++.+.|.+.|.+. |+++
T Consensus 232 -rGPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~E--al~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~v 307 (413)
T COG0112 232 -RGPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKE--ALEPEFKEYAKQVVKNAKALAEALKER-GFKV 307 (413)
T ss_pred -CCCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHH--HcChhHHHHHHHHHHHHHHHHHHHHHc-CCeE
Confidence 788999999885 78888876432222233322 23222333332 124556777888888999999999987 9998
Q ss_pred cCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC------CCeEEEEeec------CHHH
Q 018665 265 SEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------DTCIRISYAA------SLTT 331 (352)
Q Consensus 265 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~------~~~iRi~~~~------~~~~ 331 (352)
+.. .....+.+++.... .+..+..+. +.+.||.+.-.....+ +..+||..+. .++|
T Consensus 308 vsGgTdnHl~lVDl~~~~----------~~Gk~ae~~-L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e 376 (413)
T COG0112 308 VSGGTDNHLVLVDLRSKG----------LTGKKAEAA-LERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAE 376 (413)
T ss_pred ecCCccceEEEEEcccCC----------CCHHHHHHH-HHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHH
Confidence 853 33445667776311 145555544 5456898866554433 3579998754 6689
Q ss_pred HHHHHHHHHHHHhh
Q 018665 332 LQAAVERIKKGLLT 345 (352)
Q Consensus 332 l~~~~~~l~~~~~~ 345 (352)
+++..+.|.+++..
T Consensus 377 ~~~Ia~~I~~vl~~ 390 (413)
T COG0112 377 MEEIADLIADVLDG 390 (413)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988888865
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-17 Score=152.16 Aligned_cols=311 Identities=15% Similarity=0.107 Sum_probs=188.3
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH-HHhcCCeEEE
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIADATPVI 86 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~-~~~~g~~v~~ 86 (352)
.-..+.+ +.+|+.++ .....+++||+|.++..++.+++++||.||++..||.+..+. +...|..+++
T Consensus 174 G~i~eAq------~~AA~~fg------Ad~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVY 241 (720)
T PRK13578 174 GAAKDAQ------KHAAKVFN------ADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVY 241 (720)
T ss_pred hHHHHHH------HHHHHHhC------CCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEE
Confidence 3345666 88888886 677899999999999999999999999999999999999985 8999999999
Q ss_pred ecccCCCCcc----cCHH-----HHHhhccCC----------eeEEEEcCCCCCcccCCCHHHHHHHHHH-HHhCCCEEE
Q 018665 87 LPTRISENFL----LDPK-----VLESKLTEK----------SRLLILCSPSNPTGSVYPKNLLDEIARI-VAKHPRLLV 146 (352)
Q Consensus 87 i~~~~~~~~~----~d~~-----~l~~~l~~~----------~~~i~i~~p~nptG~~~~~~~l~~l~~~-~~~~~~~~l 146 (352)
+.... +.++ ++++ .+++++++. .+++++.+|++ .|.+.+ ++.|+++ ++.+ + +|
T Consensus 242 l~P~~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~-~-~l 314 (720)
T PRK13578 242 LETAR-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLC-D-YI 314 (720)
T ss_pred eeccc-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccC-C-cE
Confidence 97654 2232 4544 488887643 47888888876 689999 8899888 6777 7 99
Q ss_pred Eecccccccc-cCCC---CccccccCCCCCCceEEEeccccccccccce-eEEEEcChhHH---------HHHHhh-hhc
Q 018665 147 LSDEIYEHII-YAPA---THTSFASLPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFV---------AACNKI-QSQ 211 (352)
Q Consensus 147 ivD~~~~~~~-~~~~---~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~-~g~l~~~~~~~---------~~~~~~-~~~ 211 (352)
++||||+... |.+. .+.+......+.+-++++.|.||.+ +++. .+++-.+...+ +++... ...
T Consensus 315 lvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL--~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~ 392 (720)
T PRK13578 315 LFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQ--AGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLH 392 (720)
T ss_pred EEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcc--hhhhhHhhhhcCCcccccccccCCHHHHHHHHHHH
Confidence 9999998532 2221 1112222333334569999999998 4443 44554443322 334333 223
Q ss_pred cccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHh-cccCCceecCCC----------------------
Q 018665 212 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF-GELEGVKMSEPQ---------------------- 268 (352)
Q Consensus 212 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~g~~~~~~~---------------------- 268 (352)
.+.+|+.+..+.+-.+-.. +.....+++.+.+.+....+++.+ +.++++++..|.
T Consensus 393 qSTSPsY~LmASLDva~~~--m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w 470 (720)
T PRK13578 393 ASTSPFYPLFAALDVNAKM--HEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFF 470 (720)
T ss_pred cCCChHHHHHHHHHHHHHH--HHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhccccccc
Confidence 3344554444433332211 001122333444444444455544 333344433211
Q ss_pred ---------------------CceEEEeecCCccCCcccCCC-CCCChHHHHHHHHHccCEEeccCCCCCCCCe--EEEE
Q 018665 269 ---------------------GAFYLFIDFSTYYGSEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTC--IRIS 324 (352)
Q Consensus 269 ---------------------~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~--iRi~ 324 (352)
.-.-+.+.+++.. ...+.+. .+..+..+.+.|.++ ||.+.-.+ ... +-++
T Consensus 471 ~~~p~~~whgf~~~~~~~~~lDP~KltI~t~G~~-~~~G~~~~~Gipg~~l~~~L~e~-gI~~E~~d----~~~vL~l~s 544 (720)
T PRK13578 471 SFEPGEKWHGFEGYAEDQYFVDPCKLLLTTPGID-AETGEYEDFGIPATILANYLREN-GIVPEKCD----LNSILFLLT 544 (720)
T ss_pred ccccCccccccccccccccccCCceEEEEcCCcC-cccccccccCccHHHHHHHHHHc-CCEEEecC----CCeEEEEeC
Confidence 0001222222210 0000000 011367888888777 88876543 333 3445
Q ss_pred eecCHHHHHHHHHHHHHHHhhhC
Q 018665 325 YAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 325 ~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
++.++++++++++.|.++.+.+.
T Consensus 545 ~g~t~~~~~~Lv~aL~~f~~~~~ 567 (720)
T PRK13578 545 PAEDMAKLQQLVAMLARFEKHIE 567 (720)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Confidence 55588999999999998866443
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.8e-17 Score=134.53 Aligned_cols=288 Identities=16% Similarity=0.179 Sum_probs=194.7
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc------C--C-C-CEEEecCCCCCC-hH---------HHHH
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC------S--P-G-DEVIIPAPFWVS-YP---------EMAR 78 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~------~--~-~-~~vl~~~~~~~~-~~---------~~~~ 78 (352)
|.+.+++++ .-+.++.++.+.+|.+.+++... + + + ..|+....+|++ .. +..+
T Consensus 106 f~~~vt~lf-------~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~ 178 (427)
T KOG1402|consen 106 FAEYVTKLF-------GYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWD 178 (427)
T ss_pred HHHHHHHhc-------CcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhh
Confidence 335555554 46788889999999998887643 1 2 1 245544444443 21 1223
Q ss_pred hcCCe----EEEecccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 79 IADAT----PVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 79 ~~g~~----v~~i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
.+|.- +..+|. -|.+.|+.++++ +.++.++..-+...|.+. |+..+++..++|.+| |+++|.||++
T Consensus 179 ~fgp~~P~~~~~v~Y-------~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtky-nvl~I~DEvQ 250 (427)
T KOG1402|consen 179 GFGPFLPGVVDKVPY-------GDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKY-NVLLIADEVQ 250 (427)
T ss_pred ccCCCCCCcceeecc-------CCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhh-cEEEEehhhh
Confidence 33321 223332 278999999975 555656665588888664 566899999999999 9999999999
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccC
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
.+++.+|+.. ......-.++ +--+.|+++.+-.+++.++++++++..+....+..+++.|+++.+++.++++.
T Consensus 251 TGl~RTGk~l--a~d~env~PD---ivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalev-- 323 (427)
T KOG1402|consen 251 TGLARTGKLL--ACDYENVRPD---IVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEV-- 323 (427)
T ss_pred hcccccCcEE--EeehhhcCCC---eEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHH--
Confidence 9998877522 1111111222 23356999733469999999999999999888889999999999999999985
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhccc----CC-ceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGEL----EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~----~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
-.-+.+.++.+..-..++.+|.++ |+ ++.+. ..|.+..+.+-.. +.+++ ++.+++-.+.++ |+
T Consensus 324 ---i~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VR-GrGl~~ai~i~~~---~~~~~----~aw~~cl~lk~~-g~ 391 (427)
T KOG1402|consen 324 ---IVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVR-GRGLLNAIVINPS---KTSGQ----DAWDVCLALKEN-GL 391 (427)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhccccccchhheee-ccceEEEEEeccc---cccch----hHHHHHHccccc-cc
Confidence 223455566666777788888776 22 23333 3355555544211 11111 677888777755 87
Q ss_pred EeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHh
Q 018665 308 ALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~ 344 (352)
+--|- ..+-+|+.++. +++|++++++++.+.+.
T Consensus 392 LAkpt----H~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 392 LAKPT----HGNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred ccCCC----CCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 76653 35689999988 99999999999999874
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-16 Score=144.60 Aligned_cols=282 Identities=12% Similarity=0.141 Sum_probs=172.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhc----------C----CCCEEEecCCCCCChHHH-HHhcCCeE-----------EEecc
Q 018665 36 PDQILVSNGAKQSILQAVLAVC----------S----PGDEVIIPAPFWVSYPEM-ARIADATP-----------VILPT 89 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~----------~----~~~~vl~~~~~~~~~~~~-~~~~g~~v-----------~~i~~ 89 (352)
-+.+++++||++|++.+++... . ...+|+....+|++.... +...+... ..++.
T Consensus 110 ~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~ 189 (443)
T PRK08297 110 LPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDN 189 (443)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCC
Confidence 3689999999999999998752 1 125788888888876543 32222110 00111
Q ss_pred cCC------CC---c----ccCHHHHHhhcc---CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 90 RIS------EN---F----LLDPKVLESKLT---EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 90 ~~~------~~---~----~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
+.. .+ . .-+++++++.+. +++.++++...+...|.. +|.+.+++|.++|++| |+++|.||++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~-g~llI~DEV~ 268 (443)
T PRK08297 190 PKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEH-DALLIFDEVQ 268 (443)
T ss_pred CCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechh
Confidence 100 00 0 012455556663 577888887777666754 6788999999999999 9999999999
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHH-----hhhhccccCCChHHHHHHHHH
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN-----KIQSQFTSGASSISQKAGVAA 227 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 227 (352)
.++..+|... ........+| +.+++|.++ +|.+++.+++.+... ......+++.|++...++.++
T Consensus 269 tGfGRtG~~~-a~~~~gv~PD----iv~~gK~l~-----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~ 338 (443)
T PRK08297 269 TGVGLTGTAW-AYQQLGVRPD----IVAFGKKTQ-----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRI 338 (443)
T ss_pred hccCccchHH-HHHhcCCCCC----EEEeccccc-----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHH
Confidence 9887765421 1111111112 445789874 234444444322111 112456778899999999999
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCce-ecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccC
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 306 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 306 (352)
++.-.. ++..+++.+.-+..++.+.+..++.+.+. .+. ..|.++.+++++.. ....+.+.|.++ |
T Consensus 339 L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vr-g~G~~~~i~~~~~~-----------~~~~~~~~l~~~-G 404 (443)
T PRK08297 339 LEVIEE-DGLVENAARQGEYLLARLEELAAEFPAVVSNVR-GRGLMCAFDLPTTA-----------DRDEVIRRLWEE-G 404 (443)
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHCCCcceeee-ccceEEEEEecCHH-----------HHHHHHHHHHHC-C
Confidence 875211 22233333333333333333333344332 223 34677778875421 356788888865 9
Q ss_pred EEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 307 VALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 307 i~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
|.+.|++ ...+|++++. +++|+++++++|.++++++
T Consensus 405 vl~~~~~----~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 405 VLVLPCG----ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred EEEecCC----CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 9998753 3578887665 9999999999999999764
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-16 Score=136.33 Aligned_cols=291 Identities=12% Similarity=0.046 Sum_probs=191.2
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCC--------CCEEEecCCCCC-ChHHHHHhcCCeEEEecccCCCC-----cccCHH
Q 018665 35 TPDQILVSNGAKQSILQAVLAVCSP--------GDEVIIPAPFWV-SYPEMARIADATPVILPTRISEN-----FLLDPK 100 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~~~--------~~~vl~~~~~~~-~~~~~~~~~g~~v~~i~~~~~~~-----~~~d~~ 100 (352)
..+.|++.+++|+|++.+++...+. ..+++....+|+ ....++...+......+.++... .--|+.
T Consensus 115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t 194 (433)
T KOG1401|consen 115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDST 194 (433)
T ss_pred CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHH
Confidence 5689999999999999999875321 123666655555 45566665554444444322110 012678
Q ss_pred HHHhhccC---CeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 101 VLESKLTE---KSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 101 ~l~~~l~~---~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
.+++.+.. ++.+||+...+...|.. .+++++..|.++|+++ ++++|.||++.+++..|..+ ...+- +...
T Consensus 195 ~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~-~vl~I~DEV~tG~gR~g~~~--a~e~~---~~~P 268 (433)
T KOG1401|consen 195 ALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDN-GVLLIFDEVQTGLGRLGYGW--AQEYF---GVTP 268 (433)
T ss_pred HHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhc-CceEEeehhhhCccccchHH--HHHHh---CcCC
Confidence 88887753 46788888778777766 4678999999999999 99999999999987766421 11110 1112
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHhhhh---ccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS---QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
-+.++.|.++ +|+++|...+++++.+.+..... ..+++.|++++.++...++.-.. .+++.++.+.-+..++.+.
T Consensus 269 DI~t~aK~L~-gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~-~e~~k~vs~~~k~L~~~l~ 346 (433)
T KOG1401|consen 269 DITTVAKPLG-GGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKD-PETLKNVSKIGKELRKLLD 346 (433)
T ss_pred cceeehhhcc-CCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHH
Confidence 3788899998 88999999999999999876544 66788999999999999886433 7889999999999999999
Q ss_pred HHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEe------ec
Q 018665 254 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY------AA 327 (352)
Q Consensus 254 ~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~------~~ 327 (352)
+.+.+.+....-.-..+.++...+.....+.. +.....-.+... +........+|+.+ .+
T Consensus 347 e~~~~~~~~i~g~~grgl~ig~~~~~p~~~~~-------d~~~~~~ll~~~-------~~~~~~~~gv~i~P~~~l~~~~ 412 (433)
T KOG1401|consen 347 EYLKKTPNSICGGVGRGLVIGFEFEGPVYKFA-------DAAREQGLLILT-------LGKGLLEEGVRIAPIYLLTVEH 412 (433)
T ss_pred HHhccCCCceeeeeeeEEEEEEEEeechhhhh-------hhhhhhhHHHHH-------HhcccccceEEEeccccccccC
Confidence 99988633222212334444333322111000 221111112211 11111123334433 22
Q ss_pred CHHHHHHHHHHHHHHHhhhC
Q 018665 328 SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 328 ~~~~l~~~~~~l~~~~~~~~ 347 (352)
+.|.++++++++.+.++++.
T Consensus 413 ~~E~i~~~l~i~~~~l~~~~ 432 (433)
T KOG1401|consen 413 TPEVIQRLLTILEKVLSALN 432 (433)
T ss_pred cHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999988764
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=140.20 Aligned_cols=310 Identities=15% Similarity=0.143 Sum_probs=222.2
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEe--CChHHHHHHHHHHh--cCCCCEEEecCCCCCChHHHHH
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVS--NGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~--~g~~~a~~~~~~~l--~~~~~~vl~~~~~~~~~~~~~~ 78 (352)
|.|-.|..++. +..+++.- .....++.+.|..+ -|||+++.....-+ .-++..|.+|+|+|..+.+.++
T Consensus 91 YlpI~Gl~eF~------k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~ 164 (427)
T KOG1411|consen 91 YLPITGLAEFN------KLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFK 164 (427)
T ss_pred hccccchHHHH------HHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCcccc
Confidence 67778888888 88888876 33323444555443 67778887655544 3457889999999999999999
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
..|..+.++.--+....++|.+.+.+.++. +...+.-.+.|||||.-...+.+++|.++.++. +.+-+.|-+|.+|
T Consensus 165 ~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k-~~~pffDmAYQGf 243 (427)
T KOG1411|consen 165 DAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEK-NLLPFFDMAYQGF 243 (427)
T ss_pred ccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhc-cccchhhhhhccc
Confidence 999999888876666677898887777754 333444466799999999999999999999999 9999999999987
Q ss_pred ccCCC--CccccccCCCCCCceEEEeccccccccccceeEEEE--c-ChhH----HHHHHhhhhccccCCChHHHHHHHH
Q 018665 156 IYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA--G-PKHF----VAACNKIQSQFTSGASSISQKAGVA 226 (352)
Q Consensus 156 ~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~--~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (352)
....- ...+++-...+..+.++.-|++|.+|+-|-|+|.+. + +.+. -.+++...+....+|+..+...+..
T Consensus 244 aSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~ 323 (427)
T KOG1411|consen 244 ASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVAT 323 (427)
T ss_pred ccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhh
Confidence 54321 112222233334677889999999999999999874 3 3333 3344555566666788888888999
Q ss_pred HhcccCCChHHHH---HHHHHHHHHHHHHHHHhccc--C-CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHH
Q 018665 227 ALGLGYAGGEVVS---KMVKAFRERRDFLVKSFGEL--E-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 227 ~l~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~--~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
.+.+..+..+|+. ....++...|..+.+.|+.. + .|+.+..+-|+|.+-.+ +.++ .+.
T Consensus 324 Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl---------------~peQ-v~~ 387 (427)
T KOG1411|consen 324 ILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGL---------------NPEQ-VDW 387 (427)
T ss_pred ccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCC---------------CHHH-HHH
Confidence 9888544445544 34456677778888888764 2 36667788899887554 3444 467
Q ss_pred HHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHh
Q 018665 301 LLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 301 l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~ 344 (352)
|.+++-|++.--+ |||++. +...+..+.+.|.++..
T Consensus 388 l~ke~~iYmT~dG--------RiS~aG~ss~nV~yLa~aih~vtk 424 (427)
T KOG1411|consen 388 LTKEYHIYLTKDG--------RISMAGLSSSNVPYLADAIHAVTK 424 (427)
T ss_pred HHhhheeeeccCc--------eEeeccccccCCcccchhhHhHhc
Confidence 7888888876433 999988 66667777666665543
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-16 Score=140.66 Aligned_cols=276 Identities=11% Similarity=0.085 Sum_probs=187.2
Q ss_pred cEEEeCChHHHHHHHHHHhc-CCCCEEEecCCCCC-ChH-HHHHhcCC-eEEEecccCCCCcccCHHHHHhhccCCeeEE
Q 018665 38 QILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWV-SYP-EMARIADA-TPVILPTRISENFLLDPKVLESKLTEKSRLL 113 (352)
Q Consensus 38 ~i~~~~g~~~a~~~~~~~l~-~~~~~vl~~~~~~~-~~~-~~~~~~g~-~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i 113 (352)
-++++.|+|.+++.++.+++ ++++++++.. .|. .+. .+++..|. ++..+..+ .+..+++++++. + +.+
T Consensus 60 v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~~--~g~~~~~~~ve~--~---~~v 131 (374)
T TIGR01365 60 IGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRVLEAE--YGKLPDLKKVDF--K---NDV 131 (374)
T ss_pred EEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEEEcCC--CCCCCCHHHcCC--C---CCE
Confidence 46779999999999999998 4788898865 332 224 78888999 48888765 334589999873 2 225
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeE
Q 018665 114 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 193 (352)
Q Consensus 114 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g 193 (352)
++++.-..||...| ++++... .+ ++++|+|.+.+... .+..+. +-+++++|..|.+++++ +++
T Consensus 132 ~~vhnETSTGv~np---v~~i~~~--~~-~~lliVDavSs~g~----~~l~~d------~iDv~~tgsQK~L~~pp-Gls 194 (374)
T TIGR01365 132 VFTWNGTTSGVRVP---NGDFIPA--DR-EGLTICDATSAAFA----QDLDYH------KLDVVTFSWQKVLGGEG-AHG 194 (374)
T ss_pred EEecCCCchheecc---ccccccc--cC-CCcEEEEccchhcC----CCCChh------HCcEEEEechhccCCCC-ceE
Confidence 56667678999999 6555532 26 89999999987532 122222 24488999999998554 789
Q ss_pred EEEcChhHHHHHHhhh-----------------------hccccCCChHHHHHHHHHhcccCCCh-HHHHHHHHHHHHHH
Q 018665 194 YIAGPKHFVAACNKIQ-----------------------SQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFRERR 249 (352)
Q Consensus 194 ~l~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 249 (352)
+++.+++.+++..... ..+..+++.....++..+++. +.. +.++++.++.+++.
T Consensus 195 ~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~--i~~egGle~~~~Rh~~~a 272 (374)
T TIGR01365 195 MLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKW--AESIGGLKPLIARADDNL 272 (374)
T ss_pred EEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHH--HHHccCHHHHHHHHHHHH
Confidence 9999998877655210 122334555555555555542 112 36899999999999
Q ss_pred HHHHHHhcccCCceecCC----CCceEEEeecCCc-cCCc--ccCCCCCCC-hHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 250 DFLVKSFGELEGVKMSEP----QGAFYLFIDFSTY-YGSE--AEGFGKIEN-SESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 250 ~~l~~~l~~~~g~~~~~~----~~g~~~~~~~~~~-~~~~--~~~~~~~~~-~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
+.+++.++++..+..... ++...+.+.+++. .... -.++ + ..++.+.|.++ ||.+.+|.....+..+
T Consensus 273 ~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~-gi~i~~G~~~~~~~~f 347 (374)
T TIGR01365 273 AVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQA----DFAKELISTLEKE-GVAYDIGSYRDAPSGL 347 (374)
T ss_pred HHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhh----HHHHHHHHHHHHC-CEEEeccccccCCCce
Confidence 999999999832666542 2333344555432 1000 0000 1 57888888876 9999988765556899
Q ss_pred EEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 322 RISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 322 Ri~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
||+... +.+|++++++.|.=+.+.
T Consensus 348 RIg~~G~i~~~di~~l~~~l~~~~~~ 373 (374)
T TIGR01365 348 RIWCGATVEKSDLECLCPWLDWAFAL 373 (374)
T ss_pred EEecCCcCCHHHHHHHHHHHHHHHhc
Confidence 997765 889999999998766543
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-15 Score=137.74 Aligned_cols=289 Identities=11% Similarity=0.007 Sum_probs=196.0
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCccc
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 97 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~ 97 (352)
+.+-+++. -.|.+-....=.+|+|||+++..++.+..+ +...++++...|.++..+++..|++++.+|++ .++.+
T Consensus 136 ~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d--~~g~m 213 (470)
T PLN02263 136 VGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTL--VSGEI 213 (470)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC--CCCcC
Confidence 77777777 555432121247799999999998887643 23478889999999999999999999999986 45679
Q ss_pred CHHHHHhhccCC---eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE-----EEEecccccccccCCCCccccccCC
Q 018665 98 DPKVLESKLTEK---SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL-----LVLSDEIYEHIIYAPATHTSFASLP 169 (352)
Q Consensus 98 d~~~l~~~l~~~---~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~-----~livD~~~~~~~~~~~~~~~~~~~~ 169 (352)
|++.|++++.++ +.+|+.+..+.++|.+-| +++|+++|+++ |+ ++.||.+++++...-....+ .+.
T Consensus 214 D~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~-g~~~~~iwlHVDAA~GG~~lPf~~~~~--~~d 287 (470)
T PLN02263 214 DCADFKAKLLANKDKPAIINVNIGTTVKGAVDD---LDLVIKTLEEC-GFSQDRFYIHCDGALFGLMMPFVKRAP--KVT 287 (470)
T ss_pred cHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHc-CCccCCeeEEEeccchhhHhhhccccc--ccC
Confidence 999999999643 455556667889999999 99999999999 86 99999999876431000000 011
Q ss_pred CCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhc-----cccCCCh--HHHHHHHHHhcccCCChHHHHHHH
Q 018665 170 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ-----FTSGASS--ISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 170 ~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
....-+-+..+.+|.++ ...++|.++.+.+.++.+.....+ .+...+. .....+...+.. .+.+.+++..
T Consensus 288 f~~~vDSIsvD~HK~l~-~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~--~G~~G~~~~i 364 (470)
T PLN02263 288 FKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR--KGYRGFQKEV 364 (470)
T ss_pred CCcCccEEEECCccccC-CCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHH--hCHHHHHHHH
Confidence 11123356778899987 668899999887665544221111 1111121 122233333332 2467888889
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEE
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 322 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iR 322 (352)
++.-++.+++.+.|++. ++.....+....+.+..|. ... ..+ |..+.. .++.++
T Consensus 365 ~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~p~--------------~~~-----~~~-gW~L~~-----~~~~~H 418 (470)
T PLN02263 365 QKCLRNAHYLKDRLREA-GISAMLNELSSTVVFERPK--------------DEE-----FVR-RWQLAC-----QGNIAH 418 (470)
T ss_pred HHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEecCc--------------hHH-----hhc-ceEEcc-----CCCcEE
Confidence 99999999999999988 6665544444445554332 111 223 666654 345689
Q ss_pred EEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 323 ISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 323 i~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+.+.. +.+.++++++.|++.....
T Consensus 419 ivvmphv~~~~id~fi~DL~~~~~~~ 444 (470)
T PLN02263 419 VVVMPSVTIEKLDYFLKELVEKRSTW 444 (470)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHhhh
Confidence 88876 8899999999999887744
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.7e-16 Score=148.11 Aligned_cols=303 Identities=16% Similarity=0.126 Sum_probs=191.1
Q ss_pred hhccchhhHHHHHHHHhcCCCCCCCcEEEeC-ChHHHHHHHHHHhc----C----CCCEEEecCCCCCChHHHHHhcCCe
Q 018665 13 MRVLWSFVQQFVINLKENGLSYTPDQILVSN-GAKQSILQAVLAVC----S----PGDEVIIPAPFWVSYPEMARIADAT 83 (352)
Q Consensus 13 l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~-g~~~a~~~~~~~l~----~----~~~~vl~~~~~~~~~~~~~~~~g~~ 83 (352)
++.+++|++.+++..+ -+.+-+.+ +++.+...+++++. . ..++|+++...|......+...|++
T Consensus 542 lq~i~elq~~l~eLtG-------md~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~Gie 614 (954)
T PRK12566 542 RAMIDELEAWLCAITG-------FDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMR 614 (954)
T ss_pred HHHHHHHHHHHHHHHC-------CCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCE
Confidence 3344666688888875 33334443 55555545555532 1 2367889999997777778899999
Q ss_pred EEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 84 PVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
++.++.+. +..+|+++|+++++ +++++|++.+|++-++...+ +++|+++|+++ |+++++|.++....
T Consensus 615 Vv~Vp~D~--~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~---V~eI~~iah~~-Galv~vDgA~~~a~---- 684 (954)
T PRK12566 615 VVIVECDP--DGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEG---IREICEVVHQH-GGQVYMDGANLNAQ---- 684 (954)
T ss_pred EEEeccCC--CCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecch---HHHHHHHHHHc-CCEEEEEeeChhhc----
Confidence 99999974 33699999999987 67888888888877666555 99999999999 99999999986311
Q ss_pred CccccccCCCCCCceEEEeccccccc----cccceeEEEEcChhHHHHHHhhhh---------ccc---cC-CChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNKIQS---------QFT---SG-ASSISQKA 223 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g----~~g~~~g~l~~~~~~~~~~~~~~~---------~~~---~~-~~~~~~~~ 223 (352)
..+. .+.+.+-++++++.+|+|| .+|..+|.+.+.+.+...+.++.. ..+ .. .+.....+
T Consensus 685 --~~l~-~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~ 761 (954)
T PRK12566 685 --VGLA-RPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPI 761 (954)
T ss_pred --cCCC-ChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHH
Confidence 1111 1122455699999999885 234456665555544443332210 000 01 11111222
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE--EEeecCCccCCcccCCCCCCChHHHHHHH
Q 018665 224 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYL 301 (352)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 301 (352)
+...+.. ++.+ +.+.......+..++.++|.+..++.+..+.+.++ +.++++.... ..+ .+..+++++|
T Consensus 762 A~~Yi~~--lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~~l~~--~~g----~~~~dvakRL 832 (954)
T PRK12566 762 SWMYIAM--MGPQ-LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLKA--QTG----ISEEDVAKRL 832 (954)
T ss_pred HHHHHHH--HCHH-HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEcccccc--ccC----CCHHHHHHHH
Confidence 2333322 2344 66666656778889999997643444422212211 2233332110 001 1678899999
Q ss_pred HHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 302 LDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 302 ~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
. ++||....- .|-.++++|++++. +.+|||++++.|+.+.++.
T Consensus 833 ~-d~Gihapt~-~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~ 877 (954)
T PRK12566 833 M-DYGFHAPTM-SFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEI 877 (954)
T ss_pred H-HCCcEEeEE-eeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 9 458875432 23347899999988 8899999999999988875
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=143.07 Aligned_cols=288 Identities=16% Similarity=0.169 Sum_probs=202.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 100 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~ 100 (352)
+..|+|++ .++.+.+.-| -+.+...+.+++.++..|+...-+|.+.+..++..|+.++.+..+ |++
T Consensus 189 ~l~A~f~g------~e~a~vF~mG-f~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN-------dm~ 254 (519)
T KOG1357|consen 189 ELVARFLG------VEDAIVFSMG-FATNSMNIPSLLGKGSLIISDELNHASLITGARLSGATTRVFRHN-------DMQ 254 (519)
T ss_pred HHHHHhcC------CcceEEEecc-ccccccCcceeecCCcceeeccccchheeccccccCceEEEEecC-------CHH
Confidence 88999986 4555555544 455666777889999999999999999999999999999988743 566
Q ss_pred HHHhhccC-------------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc--CCCCcccc
Q 018665 101 VLESKLTE-------------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSF 165 (352)
Q Consensus 101 ~l~~~l~~-------------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~--~~~~~~~~ 165 (352)
.||+.|++ +..+|++..-.+.-|.+.. +.++.+++++| ..+++.||+|+..+. +|....-+
T Consensus 255 ~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkky-kayl~lDEAHSiGA~g~tGrgvce~ 330 (519)
T KOG1357|consen 255 GLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKY-KAYLYLDEAHSIGAMGATGRGVCEY 330 (519)
T ss_pred HHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccc-cEEEEeeccccccccCCCCcceeec
Confidence 66666642 1223444555678888888 99999999999 999999999996443 22222223
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhh--ccccCCChHHHHHHHHHhccc--CCChHHHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS--QFTSGASSISQKAGVAALGLG--YAGGEVVSKM 241 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~ 241 (352)
.... ..+.++.+++++|++|.+| |++.+++++++.++.... .+....+++........+... .......++.
T Consensus 331 ~g~d-~~dvDImMGtftKSfga~G---Gyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k 406 (519)
T KOG1357|consen 331 FGVD-PEDVDIMMGTFTKSFGAAG---GYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQK 406 (519)
T ss_pred cCCC-chhheeecceehhhccccc---ceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHH
Confidence 3322 2567799999999998677 999999999998875532 222334444443444444432 2235567788
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEe--ecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI--DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
..++.++..+++..|++. |+.++.......+-+ ..|. ....+.++|+++ ++.+...+....
T Consensus 407 ~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll~~~~-------------k~~~f~r~~l~~-nigvVvvgfPatpl 471 (519)
T KOG1357|consen 407 IERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLLYGPA-------------KIVAFSREMLER-NIGVVVVGFPATPL 471 (519)
T ss_pred HHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeeecCcc-------------cccHHHHHHHhc-CceEEEEeCCCchH
Confidence 888999999999999988 888887666654332 3332 344666677766 565555444332
Q ss_pred -CCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 318 -DTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 318 -~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
....|++.+. +.|+++++++.+..+-+.
T Consensus 472 ~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~~ 502 (519)
T KOG1357|consen 472 LESRARFCLSASHTKEDLDRALEVIDRVGDE 502 (519)
T ss_pred HHhHHHhhhcccccHHHHHHHHHHHhhhchh
Confidence 2567887776 889999999998877643
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.5e-16 Score=152.59 Aligned_cols=303 Identities=16% Similarity=0.143 Sum_probs=193.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCcEEEeC-ChHHHHHHHHHHh----cCCCC----EEEecCCCCCChHHHHHhcCCeEEE
Q 018665 16 LWSFVQQFVINLKENGLSYTPDQILVSN-GAKQSILQAVLAV----CSPGD----EVIIPAPFWVSYPEMARIADATPVI 86 (352)
Q Consensus 16 ~~~~~~~ia~~~~~~~~~~~~~~i~~~~-g~~~a~~~~~~~l----~~~~~----~vl~~~~~~~~~~~~~~~~g~~v~~ 86 (352)
+.+|.+.+++..+ . +++.+.. +++++....+.++ .++|+ +|++++..|.+....++..|++++.
T Consensus 544 i~e~q~~l~eltG-----~--d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~ 616 (954)
T PRK05367 544 IDQLEAWLAEITG-----Y--DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVV 616 (954)
T ss_pred HHHHHHHHHHHHC-----C--CCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEE
Confidence 3455577777765 2 3565555 5555554444333 23443 6999999999998999999999999
Q ss_pred ecccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 87 LPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 87 i~~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
++.+.+ ..+|++.|++++++ ++.+|++.+|++-++...| +++|+++|+++ |+++++|.++..... +
T Consensus 617 v~~d~~--G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~-G~~v~VDgA~~~al~-~---- 685 (954)
T PRK05367 617 VACDEN--GNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEET---IREICEIVHEH-GGQVYLDGANMNAQV-G---- 685 (954)
T ss_pred ECCCCC--CCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHc-CCEEEEECcChhhcc-C----
Confidence 998743 46899999999964 5777888888876555578 99999999999 999999999864211 1
Q ss_pred ccccCCCCCCceEEEeccccccc----cccceeEEEEcChhHHHHHHhhhh--------ccccCCChHHH--HH--HHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNKIQS--------QFTSGASSISQ--KA--GVAA 227 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g----~~g~~~g~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~--~~~~ 227 (352)
+.. +...+-+++..|.+|+|+ .+|..+|++.+.+.+...+..... ......+...+ .+ +...
T Consensus 686 -l~~-pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~y 763 (954)
T PRK05367 686 -LAR-PGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMY 763 (954)
T ss_pred -CCC-hhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHH
Confidence 111 112345599999999974 345568888887665554432210 01111122211 11 1222
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE--EEeecCCccCCcccCCCCCCChHHHHHHHHHcc
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 305 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (352)
+. .++.+.+++.....-.+..++.++|++...+.+..+.+..+ +.++++... ...+ .+..+++++|.+ +
T Consensus 764 i~--~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~--~~~g----~~~~di~krL~d-~ 834 (954)
T PRK05367 764 IR--MMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLK--ESTG----ITVDDIAKRLID-Y 834 (954)
T ss_pred HH--HHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeeccc--ccCC----CCHHHHHHHHHH-C
Confidence 22 13467777777777788899999997642333322211110 222332110 0000 167899999975 5
Q ss_pred CEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 306 QVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 306 gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
|+.....+ +-.++.++|+++. +.+|||++++.++.+..+...
T Consensus 835 G~~~~t~~-~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 835 GFHAPTMS-FPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred CCeEeecC-CccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 88765422 3347889999987 889999999999888877643
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-16 Score=144.36 Aligned_cols=277 Identities=11% Similarity=0.020 Sum_probs=171.6
Q ss_pred CcEEEeCChHHHHHHHHHHhcC--------------------------C---CCEEEecCCCCCChHHH-HHhcCC----
Q 018665 37 DQILVSNGAKQSILQAVLAVCS--------------------------P---GDEVIIPAPFWVSYPEM-ARIADA---- 82 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~~--------------------------~---~~~vl~~~~~~~~~~~~-~~~~g~---- 82 (352)
+.+++++||++|++.+++.... . ..+|+....+|++.... +...+.
T Consensus 123 ~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~ 202 (464)
T TIGR00699 123 DQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIH 202 (464)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCcccc
Confidence 6899999999999999987521 0 12688888888876543 322221
Q ss_pred -------eEEEecccCCC-C-----------cccCHHHHHhhcc---CCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHH
Q 018665 83 -------TPVILPTRISE-N-----------FLLDPKVLESKLT---EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVA 139 (352)
Q Consensus 83 -------~v~~i~~~~~~-~-----------~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~ 139 (352)
.+..+|.+... . ..-+++.+++.+. +++.+|++.......|... |.+.+++|.++|+
T Consensus 203 ~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~ 282 (464)
T TIGR00699 203 KLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITK 282 (464)
T ss_pred ccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 11122222100 0 0013566677664 3677888877777778765 6889999999999
Q ss_pred hCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChH
Q 018665 140 KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI 219 (352)
Q Consensus 140 ~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (352)
++ |+++|+||++.++..+|.. .......-. ...-+.+++|.+|.+| +++..+ .+..........+++.|+.
T Consensus 283 ~~-g~lLI~DEV~tGfGrtG~~-fa~e~~gv~--~~PDi~t~gK~lg~gG----~~~~~~-~~~~~~~~~~~~T~~gnp~ 353 (464)
T TIGR00699 283 KH-NVAFIVDEVQTGVGATGKF-WAHEHWNLD--DPPDMVTFSKKFQTAG----YFFHDP-AFRPNKPYRQFNTWMGDPS 353 (464)
T ss_pred Hc-CCEEEEeeeeeCCCCCcch-hHHHhcCCC--CCCCEEEehhhhccCC----ccccch-hccCCCCcccccCCCCCHH
Confidence 99 9999999999988765532 111111110 0022567799995234 333332 2211112234557788999
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcc----cCC-ceecC-CCCceEEEeecCCccCCcccCCCCCCC
Q 018665 220 SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEG-VKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIEN 293 (352)
Q Consensus 220 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
..+++.+.++.-. -+++.++.+++-+++.+.|++ +|. +..+. ...|.++-++++... .
T Consensus 354 ~~aaa~a~L~~l~-----~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~-----------~ 417 (464)
T TIGR00699 354 RALILREIIQEIK-----RKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEA-----------K 417 (464)
T ss_pred HHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCHH-----------H
Confidence 9999988887521 123333444444444444443 432 22222 145777777775421 3
Q ss_pred hHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 294 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 294 ~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
...+.+.++++ |+.+.+. ..+.+|+.++. +++|+++++++|.+++
T Consensus 418 ~~~i~~~~~~~-Gvl~~~~----g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 418 RDKLLKKARNN-GVNIGGC----GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred HHHHHHHHHHC-CcEEecC----CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 56788888876 8998663 24789999987 9999999999998864
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-15 Score=138.31 Aligned_cols=284 Identities=17% Similarity=0.151 Sum_probs=178.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC------hHHHHHhcCCeEEEecccCCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS------YPEMARIADATPVILPTRISEN 94 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~------~~~~~~~~g~~v~~i~~~~~~~ 94 (352)
+.+|++++ .+..+++++++.|+..++.+ +.+||+|++++..|.. +...++..|++++.++...
T Consensus 129 ~~lA~l~g-------ae~alvv~sg~aAi~l~l~~-l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~--- 197 (454)
T TIGR00474 129 GLLCELTG-------AEDALVVNNNAAAVLLALNT-LAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN--- 197 (454)
T ss_pred HHHHHHhC-------CCcEEEECCHHHHHHHHHHH-hCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC---
Confidence 88888875 34456788888999888855 5788999999876422 2346678899999987542
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCc--c--cCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC---CCc-cccc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPT--G--SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP---ATH-TSFA 166 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~npt--G--~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~---~~~-~~~~ 166 (352)
..++++++++++++++++++++++|++ | ...| +++|+++|+++ |+++++|.+.+.+.-.+ -.. +.+.
T Consensus 198 -~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~d---l~~I~~la~~~-g~~vivD~~sG~l~~~~~~gl~~~p~~~ 272 (454)
T TIGR00474 198 -RTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVS---IAELVALGREH-GLPVMEDLGSGSLVDLSRYGLPDEPTVQ 272 (454)
T ss_pred -CCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCC---HHHHHHHHHHc-CCeEEEECCCcccccchhccCCCCcccc
Confidence 247899999999999999999999974 6 4678 99999999999 99999998644321100 001 1111
Q ss_pred cCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCC---------hHH
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAG---------GEV 237 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~ 237 (352)
.. ...+-++++.|.+|.+|.+ ..|++++++++++.++............+..++..+.+...... .+.
T Consensus 273 ~~-~~~GaDiv~fSg~K~LgGp--~~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~ 349 (454)
T TIGR00474 273 EV-IAAGVDLVTFSGDKLLGGP--QAGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRM 349 (454)
T ss_pred cH-hHcCCCEEEecCccccCCC--eEEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHH
Confidence 11 1134569999999998523 48999999998887654322111223333333444433321100 011
Q ss_pred HHHHHHHHHHHHHHHHHHhccc--CCc--eecCCC-------------CceEEEeecCCccCCcccCCCCCCChHHHHHH
Q 018665 238 VSKMVKAFRERRDFLVKSFGEL--EGV--KMSEPQ-------------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~--~g~--~~~~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
+....++..++...+.+.|++. +++ .+.+.. .++.+.++.... ++.++.++
T Consensus 350 l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~------------~~~~l~~~ 417 (454)
T TIGR00474 350 LTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDGL------------SAEKLEAR 417 (454)
T ss_pred hccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCCC------------CHHHHHHH
Confidence 2222335555667777777653 343 333221 122233332221 67889888
Q ss_pred HHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHH
Q 018665 301 LLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERI 339 (352)
Q Consensus 301 l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l 339 (352)
|.+. ...|... -.++.+.+.+-. .++|++.+++.|
T Consensus 418 lr~~-~~~ii~r---~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 418 LREL-PPPIIGR---IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred HhcC-CCCEEEE---EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 8743 4333321 246778888877 778888887765
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=143.96 Aligned_cols=279 Identities=14% Similarity=0.138 Sum_probs=160.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEec-CCCCCChHHHHH-----hcCCe--E--EEecccCCCCcccCHHHHH
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--SPGDEVIIP-APFWVSYPEMAR-----IADAT--P--VILPTRISENFLLDPKVLE 103 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~-~~~~~~~~~~~~-----~~g~~--v--~~i~~~~~~~~~~d~~~l~ 103 (352)
.+.++++++|++|++.+++... ....+|+.. ...|+++..... ..+.. + ....++ . .|++.++
T Consensus 104 ~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~---~d~~~l~ 178 (431)
T PRK06209 104 ADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR--Y---NDIASLE 178 (431)
T ss_pred cceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccC--C---CCHHHHH
Confidence 3689999999999999998642 223456554 333332111100 00110 0 011111 1 2788888
Q ss_pred hhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEec
Q 018665 104 SKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 180 (352)
Q Consensus 104 ~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 180 (352)
+.++ +++.+|++.... |...|.+.+++|.++|++| |+++|+||++.++.+.+........+. .-+.+
T Consensus 179 ~~l~~~~~~~aavi~Epv~---g~~~~~~~l~~l~~lc~~~-g~lLI~DEv~tG~~~~~~g~~~~~gv~------PDi~t 248 (431)
T PRK06209 179 ALFEDHPGRIACVILEPAT---ADEPQDGFLHEVRRLCHEN-GALFILDEMITGFRWHMRGAQKLYGIV------PDLSC 248 (431)
T ss_pred HHHHhCCCCEEEEEEcccc---CCCCCHHHHHHHHHHHHHc-CCEEEEEcccccCCcCcchhhHHhCCC------cceee
Confidence 8874 345666665443 3367788999999999999 999999999987643221111111111 22577
Q ss_pred cccccccccceeEEEEcChhHHHH--HHhh------hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 181 FSKAFAMTGWRLGYIAGPKHFVAA--CNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 181 ~sK~~g~~g~~~g~l~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
++|.+| +|+++|++++++++++. +... ...+++++|+...+++.++++.... ++..+++.+..+..++.+
T Consensus 249 ~gK~lg-gG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~-~~~~~~~~~~g~~l~~~L 326 (431)
T PRK06209 249 FGKALG-NGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRD-EDVIERLHEQGAKLAAGV 326 (431)
T ss_pred ehhhhc-CCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHH
Confidence 899998 78999999999998876 3111 1234566788888888888876321 233344444444444444
Q ss_pred HHHhcccCCcee-cCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeecCHHH
Q 018665 253 VKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTT 331 (352)
Q Consensus 253 ~~~l~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~~~~~ 331 (352)
.+...++ ++.. +...+.......+..... ... . ......+.+.+.++ |+.+.| ++++..++++|
T Consensus 327 ~~~~~~~-~~~~~vr~~G~~~~~~~~~~~~~-~~~-~--~~~~~~~~~~l~~~-Gi~~p~---------l~is~~ht~~d 391 (431)
T PRK06209 327 NEAAAEH-GLQDHVRVSGRPCCLTYSTLDGN-GQP-S--QAFRTLFLQETIRR-GVLMPS---------LVVSYAHGDAD 391 (431)
T ss_pred HHHHHhC-CCCeEEEeecceEEEEEecCCcc-cCC-c--HHHHHHHHHHHHHC-Cccccc---------ccccccCCHHH
Confidence 4433334 3222 222222221111110000 000 0 00123567777765 887622 57776679999
Q ss_pred HHHHHHHHHHHHhhh
Q 018665 332 LQAAVERIKKGLLTL 346 (352)
Q Consensus 332 l~~~~~~l~~~~~~~ 346 (352)
|++++++|.++++++
T Consensus 392 Id~~l~~l~~~l~~~ 406 (431)
T PRK06209 392 IERTIDAVHGALGVY 406 (431)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999876
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-15 Score=144.48 Aligned_cols=218 Identities=12% Similarity=0.138 Sum_probs=147.6
Q ss_pred CeeEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccc
Q 018665 109 KSRLLILCSP-SNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 186 (352)
Q Consensus 109 ~~~~i~i~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 186 (352)
++.++++... +...|..+ |++.++++.++|++| |+++|.||++.+|+..|... ...... ...-+.+++|.++
T Consensus 584 ~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~-gilLI~DEV~TGfGRtG~~f-a~e~~g----v~PDIi~~gKgLt 657 (817)
T PLN02974 584 HIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSR-KIPVIFDEVFTGLWRLGVES-AWELLG----CKPDIACYAKLLT 657 (817)
T ss_pred CEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeecccCCCcccchh-hHHhcC----CCCCEEeeccccc
Confidence 5677777664 67778765 677999999999999 99999999999998877522 222222 2233667889998
Q ss_pred ccc-ceeEEEEcChhHHHHHHh------hhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHh---
Q 018665 187 MTG-WRLGYIAGPKHFVAACNK------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF--- 256 (352)
Q Consensus 187 ~~g-~~~g~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l--- 256 (352)
+| +++|.+++++++.+.+.. ..+..+++.|+++.+++.+.|+.-.. .+..+++.+..++..+++.+.|
T Consensus 658 -gG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~-~~~~~~l~~~~~~l~~~l~~~l~~~ 735 (817)
T PLN02974 658 -GGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKD-PSTNPNLIPPGSRLRELWDEELVRA 735 (817)
T ss_pred -CCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 699999999999998752 12456788999999999999886321 2333444555555544444444
Q ss_pred -cccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHH
Q 018665 257 -GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQ 333 (352)
Q Consensus 257 -~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~ 333 (352)
.++|.+.-+. .-|.++.+++.+.... +++ ....+..+.+.++.+.|+.+++. .+.+|+.++. ++++++
T Consensus 736 l~~~p~V~~VR-g~Gl~~~iel~~~~~~--~~~-~~~~a~~v~~~~~~~~Gl~~r~~-----Gnvi~l~pP~~i~~e~l~ 806 (817)
T PLN02974 736 ISSLPNVERVV-SLGTVLALELDAEGSG--SGY-SSLYARSVVRRLRREDGIYARPL-----GNVVYLMCGPTTSPETCT 806 (817)
T ss_pred HhhCCCeeEEE-eeeeEEEEEEecCCcc--ccc-chHHHHHHHHHHHHhCCEEEEec-----CCEEEEeCCCCCCHHHHH
Confidence 4444444443 3456677777432110 111 00124567777772349999873 3688886665 899999
Q ss_pred HHHHHHHHHH
Q 018665 334 AAVERIKKGL 343 (352)
Q Consensus 334 ~~~~~l~~~~ 343 (352)
++++.|.+.+
T Consensus 807 ~~~~~l~~~~ 816 (817)
T PLN02974 807 RLLRKVYRRL 816 (817)
T ss_pred HHHHHHHHHh
Confidence 9999998876
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=150.01 Aligned_cols=283 Identities=14% Similarity=0.096 Sum_probs=195.9
Q ss_pred CChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCC--CCEEEecCCCCCChHHHH----HhcC
Q 018665 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSP--GDEVIIPAPFWVSYPEMA----RIAD 81 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~--~~~vl~~~~~~~~~~~~~----~~~g 81 (352)
....|+.++.|.+.++++.+ ++..++.+..++|++.+.++.++ .++ +++|++++..|+.+...+ +..|
T Consensus 116 sQG~Leal~~~Qt~la~LtG-----~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G 190 (954)
T PRK05367 116 SQGRLEALLNFQTMVADLTG-----LEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLG 190 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHC-----CChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCC
Confidence 44467778889999999998 88999999999999999888776 233 389999999999888654 5689
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
++++.++.+. + .+ .+++..+++.+| |-+|.+.| +++|+++|+++ |+++++|..+..+..
T Consensus 191 ~ev~~~~~~~--d--~~--------~~~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~-Gal~~vda~~~Al~~---- 249 (954)
T PRK05367 191 IEVVVGDAAK--A--LD--------HDDVFGVLLQYP-GTSGEVRD---YTALIAAAHAR-GALVAVAADLLALTL---- 249 (954)
T ss_pred CEEEEecCcc--C--CC--------cccEEEEEEecC-CCCeeecc---HHHHHHHHHHc-CCEEEEEehhhhccC----
Confidence 9999998753 1 11 234555555454 56899998 99999999999 999999975532211
Q ss_pred ccccccCCCCCCceEEEecccccc---ccccceeEEEEcChhHHHHHHhhhh------------------------cccc
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAF---AMTGWRLGYIAGPKHFVAACNKIQS------------------------QFTS 214 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~---g~~g~~~g~l~~~~~~~~~~~~~~~------------------------~~~~ 214 (352)
..+ +.+.+-+++++|.+|+. |.+|...|++.+++++.+.+..... ....
T Consensus 250 l~~----pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRreka 325 (954)
T PRK05367 250 LTP----PGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKA 325 (954)
T ss_pred CCC----hhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCccccccccccccccccccc
Confidence 112 23345669999999982 2345569999999988777531100 0001
Q ss_pred CCChH---HHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCC
Q 018665 215 GASSI---SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 291 (352)
Q Consensus 215 ~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 291 (352)
+.|.- ...++.+.+-........++++.++...+..++.+.|+.. |+++..+...-.+.++++.
T Consensus 326 TsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~~~~~f~~~~~~~~~------------ 392 (954)
T PRK05367 326 TSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL-GLEVVHDSFFDTLTVEVGG------------ 392 (954)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CcccCCCCCCCeEEEeCCC------------
Confidence 11211 1222222211111136778888999999999999999874 8777543211123344431
Q ss_pred CChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHH
Q 018665 292 ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 340 (352)
Q Consensus 292 ~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~ 340 (352)
++.++.++|.++ ||.+..- .++.+|+|++. +++||+++++.|+
T Consensus 393 -~~~~i~~~l~~~-gi~~~~~----~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 393 -DAAAVLARALAA-GINLRRV----DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred -CHHHHHHHHHHC-Cceeccc----cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 688999999876 8887321 26789999998 8899999999997
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-15 Score=139.00 Aligned_cols=280 Identities=12% Similarity=0.126 Sum_probs=168.9
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC--------------CCCEEEecCCCCCChHH-HHHhcCCe-EE----------Eecc
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS--------------PGDEVIIPAPFWVSYPE-MARIADAT-PV----------ILPT 89 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~--------------~~~~vl~~~~~~~~~~~-~~~~~g~~-v~----------~i~~ 89 (352)
-+.+++++||++|++.+++.... .+.+|+....+|++... ++...|.. .. .++.
T Consensus 103 ~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~ 182 (431)
T TIGR03251 103 LPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDN 182 (431)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCC
Confidence 36899999999999999987521 03578888888877653 33222211 00 0111
Q ss_pred cC-----C-CCc-------ccCHHHHHhhc---cCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 90 RI-----S-ENF-------LLDPKVLESKL---TEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 90 ~~-----~-~~~-------~~d~~~l~~~l---~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
+. . ... ..+++++++.+ .+++.++++...+...|.. .|++.+++|.++|+++ |+++|+||++
T Consensus 183 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~ 261 (431)
T TIGR03251 183 PKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEH-DALLIFDEVQ 261 (431)
T ss_pred CcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecch
Confidence 10 0 000 01244455555 3578888888777777865 5778999999999999 9999999999
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcCh--hHHHHH-H-hhhhccccCCChHHHHHHHHHh
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--HFVAAC-N-KIQSQFTSGASSISQKAGVAAL 228 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~--~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l 228 (352)
.++..+|.. .......-.+| +.+++|.+ +. .|++...+ ++.+.. . ......+++.|+...+++.+++
T Consensus 262 tG~GrtG~~-~a~~~~gv~PD----i~~~gK~~--~~--~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L 332 (431)
T TIGR03251 262 TGVGLTGTA-WAYQQLGVQPD----IVAFGKKT--QV--CGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRIL 332 (431)
T ss_pred hccCccchH-HHHHhcCCCCC----EEEecccC--cc--ceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHH
Confidence 988776532 11111211112 33578876 21 25554432 122211 1 1123455678999999999988
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE
Q 018665 229 GLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308 (352)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 308 (352)
+.-.. ....+++.+..++.++.+.+..++.+++.......|.++.++++... ....+.+.|.++ ||.
T Consensus 333 ~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~-----------~~~~~~~~l~~~-Gvl 399 (431)
T TIGR03251 333 EIIEE-ERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPSTA-----------DRDEVIRQLYRE-GVL 399 (431)
T ss_pred HHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCHH-----------HHHHHHHHHHhC-CeE
Confidence 75211 12234444444444445544334444232222234666777776421 355788888865 999
Q ss_pred eccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 309 LVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 309 i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
+.+.+ .+.+|++++. +++|+++++++|.++
T Consensus 400 ~~~~g----~~~lr~~P~l~~t~~eid~~l~~l~~~ 431 (431)
T TIGR03251 400 LLGCG----ERSIRFRPPLTVTREEIDAAIDAIRRV 431 (431)
T ss_pred EecCC----CCeEEEECCccCCHHHHHHHHHHHHhC
Confidence 97742 3678988876 899999999998763
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-15 Score=140.64 Aligned_cols=308 Identities=11% Similarity=0.087 Sum_probs=187.6
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEe
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i 87 (352)
.-..+.+ +.+|+.++ .....++++|+|.++..++.+++.+||.||++..||.+..+++...|..++++
T Consensus 195 G~i~eAe------~~AA~~fg------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl 262 (714)
T PRK15400 195 GPHKEAE------EYIARVFN------ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYF 262 (714)
T ss_pred hHHHHHH------HHHHHHhC------CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEe
Confidence 3345666 88888886 66788999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCc----ccC-----HHHHHhhccCC-----eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc
Q 018665 88 PTRISENF----LLD-----PKVLESKLTEK-----SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153 (352)
Q Consensus 88 ~~~~~~~~----~~d-----~~~l~~~l~~~-----~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~ 153 (352)
+... ..+ .++ .+.+++++++. +..+++.+|++ .|.+++ ++.|.++|+.+ + |++||||+
T Consensus 263 ~P~r-n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~-~--ilvDEAwg 334 (714)
T PRK15400 263 RPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY-DGLLYN---TDFIKKTLDVK-S--IHFDSAWV 334 (714)
T ss_pred cccc-cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC-ccEecC---HHHHHHHhCCC-C--EEEEccch
Confidence 7653 222 234 78999988642 23688888854 799999 88889999888 7 68999998
Q ss_pred ccc-cCCCC-ccccccCCC-CCCceEEEeccccccccccce-eEEEEcChhH-HHHHHhh-hhccccCCChHHHHHHHHH
Q 018665 154 HII-YAPAT-HTSFASLPG-MWERTLTVNGFSKAFAMTGWR-LGYIAGPKHF-VAACNKI-QSQFTSGASSISQKAGVAA 227 (352)
Q Consensus 154 ~~~-~~~~~-~~~~~~~~~-~~~~~i~~~s~sK~~g~~g~~-~g~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 227 (352)
... |.+.- +.+...... ..+.++++.|.||.+ +++. .+++-.+..+ .+++... ....+.+|+.+..+.+-.+
T Consensus 335 ah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL--~alTQaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l~ASLD~a 412 (714)
T PRK15400 335 PYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLL--AAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETA 412 (714)
T ss_pred hhhccCcccCCcChhhcCCCCCCceEEEEchhhcc--cchhHHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 642 22211 011111111 113458999999998 4443 3333222211 1223222 2233445555555444443
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCC------ceecCCCC----------------c-------------eE
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG------VKMSEPQG----------------A-------------FY 272 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g------~~~~~~~~----------------g-------------~~ 272 (352)
... +..+.-+++.+...+....+++.+.++++ +.+..+.. | .-
T Consensus 413 ~~~--m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~K 490 (714)
T PRK15400 413 AAM--MKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIK 490 (714)
T ss_pred HHH--HHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCce
Confidence 332 10123344555555566666666665544 44432220 0 01
Q ss_pred EEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEE--EeecCHHHHHHHHHHHHHHHhh
Q 018665 273 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI--SYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi--~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
+.+.+|+. +..-+-......+..+.+.|.+ +||.+.-.. ...+-+ +++.++++++++++.|.++-+.
T Consensus 491 lti~tpgi-~~~g~~~~~Gipg~~v~~~L~e-~gI~~E~~d----~~~iLfl~s~g~t~~~~~~L~~aL~~f~~~ 559 (714)
T PRK15400 491 VTLLTPGM-KKDGTMSDFGIPASIVAKYLDE-HGIVVEKTG----PYNLLFLFSIGIDKTKALSLLRALTDFKRA 559 (714)
T ss_pred EEEEeCCC-CCCccccccCCCHHHHHHHHHH-cCCEEEecC----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 22333321 0000000011257788888865 588875532 444444 4444889999999999887554
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.6e-15 Score=137.00 Aligned_cols=315 Identities=12% Similarity=0.102 Sum_probs=195.5
Q ss_pred CCCCCChhhhccchhhHHHHHHHH-hcC-CC----------CCCCcEEEeCChHHHHHHHHHHhcC--------------
Q 018665 5 RVSQGTLQMRVLWSFVQQFVINLK-ENG-LS----------YTPDQILVSNGAKQSILQAVLAVCS-------------- 58 (352)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~ia~~~~-~~~-~~----------~~~~~i~~~~g~~~a~~~~~~~l~~-------------- 58 (352)
...+...+++ +.+.+++. ..+ .+ .+...=.+++|+|+|+..++.+...
T Consensus 122 ~~spa~t~lE------~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~ 195 (522)
T TIGR03799 122 ETSKAFTPLE------RQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAR 195 (522)
T ss_pred ecCcchHHHH------HHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhcccccccccccc
Confidence 3455666777 77777776 221 10 1122346789999999888776321
Q ss_pred ------------CCCEEEecCCCCCChHHHHHhcCC---eEEEecccCCCCcccCHHHHHhhcc----CCeeEEEEc--C
Q 018665 59 ------------PGDEVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLT----EKSRLLILC--S 117 (352)
Q Consensus 59 ------------~~~~vl~~~~~~~~~~~~~~~~g~---~v~~i~~~~~~~~~~d~~~l~~~l~----~~~~~i~i~--~ 117 (352)
++..|+++.-.|.++..+++..|. +++.+|++ .++.+|++.|+++++ ++++.++++ .
T Consensus 196 ~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d--~~g~~d~~~L~~~i~~~~~~g~~~~~vvata 273 (522)
T TIGR03799 196 EGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTD--ANNRIDVDALRDKCAELAEQNIKPLAIVGVA 273 (522)
T ss_pred ccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeC--CCCcCCHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 123688888999999999999998 78999987 445799999999885 344444443 4
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc-ccccCCCCCCceEEEeccccccccccceeEEEE
Q 018665 118 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 196 (352)
Q Consensus 118 p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~ 196 (352)
.++.+|.+.| +++|+++|+++ |+++++|.++++......... .+..+ ..-+.++.|.+|+++ ...++|.++
T Consensus 274 Gtt~tGaiDp---l~eIa~i~~~~-g~~lHVDaA~gg~~~~~~~~r~~l~gl---e~aDSit~d~HK~l~-~P~g~G~ll 345 (522)
T TIGR03799 274 GTTETGNIDP---LDEMADIAQEL-GCHFHVDAAWGGATLLSNTYRHLLKGI---ERADSVTIDAHKQLY-VPMGAGMVL 345 (522)
T ss_pred cCcCCCCcCC---HHHHHHHHHHc-CCeEEEEchhhhHHHhCHHHHHHhcCc---hhCCEEEEChhhcCC-cCcccEEEE
Confidence 4679999999 99999999999 999999999986432110000 01211 123478999999876 556789887
Q ss_pred cC-hhHHHHHHhhhhc-----------cc--cCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCc
Q 018665 197 GP-KHFVAACNKIQSQ-----------FT--SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 262 (352)
Q Consensus 197 ~~-~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~ 262 (352)
.+ +...+.+.....+ ++ .+.+..+ ..+..+++. .....++++.++..++.+++.+.|++.|++
T Consensus 346 vr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~a-l~lw~aL~~--lG~~G~~~ii~~~~~la~~l~~~L~~~~~~ 422 (522)
T TIGR03799 346 FKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMA-MLVYAGLHI--IGRKGYELLIDQSIEKAKYFADLIQQQPDF 422 (522)
T ss_pred EeCHHHHHHhccCcchhcCCCCCccccceeecCcchHH-HHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 75 4554544321000 11 1222222 123333332 235778999999999999999999999999
Q ss_pred eecCCCCceEEEeec-CCccCCcc-----cCCCC-----CCChHHHHHHHHHccCEEeccCCC----CCC--CCeEEEEe
Q 018665 263 KMSEPQGAFYLFIDF-STYYGSEA-----EGFGK-----IENSESLCRYLLDKAQVALVPGDA----FGD--DTCIRISY 325 (352)
Q Consensus 263 ~~~~~~~g~~~~~~~-~~~~~~~~-----~~~~~-----~~~~~~~~~~l~~~~gi~i~~g~~----~~~--~~~iRi~~ 325 (352)
+++.+..-..+.+++ |....... +.... ..-...+.+++.+++...+..... +.. .-.+|+++
T Consensus 423 el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~ 502 (522)
T TIGR03799 423 ELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVL 502 (522)
T ss_pred EEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEe
Confidence 988654333344443 32211000 00000 001235666666664444442211 111 13699998
Q ss_pred ec---CHHHHHHHHHH
Q 018665 326 AA---SLTTLQAAVER 338 (352)
Q Consensus 326 ~~---~~~~l~~~~~~ 338 (352)
.. ++++++.+++.
T Consensus 503 ~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 503 ANPLTTHEILQDILDE 518 (522)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 76 77888887754
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-14 Score=140.33 Aligned_cols=304 Identities=14% Similarity=0.104 Sum_probs=195.2
Q ss_pred hhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc--------CCCCEEEecCCCCCChHHHHHhcCCeE
Q 018665 13 MRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC--------SPGDEVIIPAPFWVSYPEMARIADATP 84 (352)
Q Consensus 13 l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~~~~vl~~~~~~~~~~~~~~~~g~~v 84 (352)
++.+++|.+.+++..| .+. --+..++++.+....+.++. .+.+.|+++...|...-..++..|+++
T Consensus 529 lq~i~elq~~l~eltG-----md~-~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~V 602 (939)
T TIGR00461 529 QELIAQLEKWLCSITG-----FDA-ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQV 602 (939)
T ss_pred HHHHHHHHHHHHHHHC-----CCC-cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEE
Confidence 3444666688888876 442 22333445554444444332 123579999999988888899999999
Q ss_pred EEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 85 VILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 85 ~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+.++.+ .++.+|+++|+++++ +++++|++.+|+| +|...+. +++|+++|+++ |..+++|.++....
T Consensus 603 v~V~~d--~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~--I~eI~~iah~~-G~~v~VDgAq~~al----- 671 (939)
T TIGR00461 603 VPVNCD--QDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPT--IQHACDIVHSF-GGQVYLDGANMNAQ----- 671 (939)
T ss_pred EEeccC--CCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceeccc--HHHHHHHHHHc-CCEEEEEecChhhC-----
Confidence 999986 344699999999997 4889999999998 6666332 99999999999 99999999986411
Q ss_pred ccccccCCCCCCceEEEeccccccc----cccceeEEEEcChhHHHHHHhhh----------h-----ccccCCCh-HHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNKIQ----------S-----QFTSGASS-ISQ 221 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g----~~g~~~g~l~~~~~~~~~~~~~~----------~-----~~~~~~~~-~~~ 221 (352)
..+. .+.+.+-+++.+|.+|.|+ .+|..+|++.+.+++...+.... . ..+...+. ...
T Consensus 672 -~~l~-~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~ 749 (939)
T TIGR00461 672 -VGLT-SPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASIL 749 (939)
T ss_pred -CCCC-CccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHH
Confidence 0111 1123456699999999774 45677899998877665543110 0 00101111 111
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC-Cce-E--EEeecCCccCCcccCCCCCCChHHH
Q 018665 222 KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAF-Y--LFIDFSTYYGSEAEGFGKIENSESL 297 (352)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~g~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (352)
..+...+.. ++.+.+.+..+..-.+..++.++|++ +.++..+. .+. + +.++++.. .+..| .+..++
T Consensus 750 l~a~~yi~~--lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~--~~~~g----~~~~dI 819 (939)
T TIGR00461 750 PISWMYIKM--MGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPL--KAKTG----IEAIDV 819 (939)
T ss_pred HHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccch--hhhcC----CCHHHH
Confidence 222222222 34788888888888899999999986 44544332 222 2 33455421 01111 178999
Q ss_pred HHHHHHccCEEeccCCCCCCCCeEEEEee--cCHHHHHHHHHHHHHHHhhhC
Q 018665 298 CRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 298 ~~~l~~~~gi~i~~g~~~~~~~~iRi~~~--~~~~~l~~~~~~l~~~~~~~~ 347 (352)
+++|.+. |+.-..-+ |-..+.+=|.++ .+.+|||++++.+.++.++..
T Consensus 820 akrL~d~-G~hapt~~-~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~ 869 (939)
T TIGR00461 820 AKRLQDY-GFHAPTLS-FPVPGTLMVEPTESESLEELDRFCDAMIAIKEEIN 869 (939)
T ss_pred HHHHHhC-CeeccccC-CccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999976 87643322 223344444444 488999999999988776654
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-15 Score=146.46 Aligned_cols=282 Identities=9% Similarity=0.076 Sum_probs=190.6
Q ss_pred hhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cC--CCCEEEecCCCCCChHHHHH----hcCCe
Q 018665 11 LQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CS--PGDEVIIPAPFWVSYPEMAR----IADAT 83 (352)
Q Consensus 11 ~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~--~~~~vl~~~~~~~~~~~~~~----~~g~~ 83 (352)
..+..+++|.+.+|++++ ++.+++.++.++|++.+.+++++ .+ ++++|++++..|+.+...++ ..|++
T Consensus 145 G~lqal~~~Qt~ia~LtG-----~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~Gie 219 (993)
T PLN02414 145 GRLESLLNYQTMITDLTG-----LPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLE 219 (993)
T ss_pred HHHHHHHHHHHHHHHHhC-----CChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCE
Confidence 356677888899999998 88999999999999999888776 33 34789999999999876654 56999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
++.++.+.. + ...+....++ .+..|.+|.+.| +++|+++|+++ |+++++ .++.. ....- .
T Consensus 220 V~~v~~~~~-----~------~~~~~v~~vl-vq~P~~~G~v~d---v~~I~~~ah~~-GaL~iV-aad~l-al~~l--~ 279 (993)
T PLN02414 220 VVVADEKDF-----D------YSSGDVCGVL-VQYPATDGEVLD---YAEFVKNAHAN-GVKVVM-ATDLL-ALTML--K 279 (993)
T ss_pred EEEecchhh-----c------cccCceEEEE-EecCCCCeEEcC---HHHHHHHHHHc-CCEEEE-EECHH-HhcCC--C
Confidence 999987421 1 1122344444 333345899999 99999999999 999999 44432 11111 1
Q ss_pred ccccCCCCCCceEEEecccccc---ccccceeEEEEcChhHHHHHHh-hhh-----------------------ccccCC
Q 018665 164 SFASLPGMWERTLTVNGFSKAF---AMTGWRLGYIAGPKHFVAACNK-IQS-----------------------QFTSGA 216 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~---g~~g~~~g~l~~~~~~~~~~~~-~~~-----------------------~~~~~~ 216 (352)
+. ...+-++++++.+|+. |.+|.+.|++.+++++.+.+.. +.. ....+.
T Consensus 280 ~p----ge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTs 355 (993)
T PLN02414 280 PP----GEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATS 355 (993)
T ss_pred CH----hhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhccccc
Confidence 22 2245569999999996 3345569999999887665431 000 001233
Q ss_pred ChHHHHHHHHHhc---ccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCC
Q 018665 217 SSISQKAGVAALG---LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 293 (352)
Q Consensus 217 ~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
|.-...++.+.+. ........++++.+++.++..++.+.|+.. |+++..+.-.-.+.++++ +
T Consensus 356 Nict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~-G~~~~~~~~f~~vt~~~~--------------~ 420 (993)
T PLN02414 356 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL-GFQVQSLPFFDTVKVKCS--------------D 420 (993)
T ss_pred chhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc-CCccCCCCCcCeEEEecC--------------C
Confidence 3322222333222 111134668888899999999999999875 777754321112334443 4
Q ss_pred hHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHH
Q 018665 294 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 341 (352)
Q Consensus 294 ~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~ 341 (352)
..++.++|.++ ||.+..- .++.+|+|++. +++||+++++.|+.
T Consensus 421 ~~~v~~~L~~~-gI~l~~~----~~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 421 ADAIADAAAKV-GINLRVV----DANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred HHHHHHHHHHC-CCeeEEe----cCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 57899999876 8866432 25679999998 88999999999963
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=129.26 Aligned_cols=313 Identities=14% Similarity=0.109 Sum_probs=209.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC-CCCEEEecC-------CCCCC-h
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS-PGDEVIIPA-------PFWVS-Y 73 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-~~~~vl~~~-------~~~~~-~ 73 (352)
-|+.++.+.+|+ +.+++.++ .+.+++|.+++.+...++..+++ +|+.+.+.. ..|+. .
T Consensus 69 ~Y~gdpSv~~Le------e~vael~G-------~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett 135 (467)
T TIGR02617 69 AYSGSRSYYALA------ESVKNIFG-------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT 135 (467)
T ss_pred ccccCchHHHHH------HHHHHHhC-------CceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecc
Confidence 488888888999 99999985 66789999999999999999988 566665433 33333 3
Q ss_pred HHHHHhcCCeEEEeccc--------CCCCcccCHHHHHhhccC----CeeEEEEcCCCC-CcccCCCHHHHHHHHHHHHh
Q 018665 74 PEMARIADATPVILPTR--------ISENFLLDPKVLESKLTE----KSRLLILCSPSN-PTGSVYPKNLLDEIARIVAK 140 (352)
Q Consensus 74 ~~~~~~~g~~v~~i~~~--------~~~~~~~d~~~l~~~l~~----~~~~i~i~~p~n-ptG~~~~~~~l~~l~~~~~~ 140 (352)
...+...|..++.++.+ ......+|+++|++.+++ ++..+...-.+| -.|+++|.+.++++.++|++
T Consensus 136 ~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~ 215 (467)
T TIGR02617 136 QGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKK 215 (467)
T ss_pred hHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHH
Confidence 46778889888776432 122345899999999973 333332222233 46899999999999999999
Q ss_pred CCCEEEEeccccccc-cc------CCCCccccccCCC--CCCceEEEeccccccccccceeEEEEcChh----HHHHHHh
Q 018665 141 HPRLLVLSDEIYEHI-IY------APATHTSFASLPG--MWERTLTVNGFSKAFAMTGWRLGYIAGPKH----FVAACNK 207 (352)
Q Consensus 141 ~~~~~livD~~~~~~-~~------~~~~~~~~~~~~~--~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~----~~~~~~~ 207 (352)
| |+.++.|.+...- .+ .+....+...+.. ...-+.+..|++|.+|.+- .|+++++++ +.++.+.
T Consensus 216 ~-GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApv--Gg~Lag~d~~~~~l~~~~~~ 292 (467)
T TIGR02617 216 Y-DIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPM--GGLLCFKDDSFFDVYTECRT 292 (467)
T ss_pred c-CCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcc--cceEEecchhHHHHHHHHHh
Confidence 9 9999999986531 21 0112233332210 0122377889999987441 155566544 3333332
Q ss_pred hh-----hccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeec----C
Q 018665 208 IQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF----S 278 (352)
Q Consensus 208 ~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~----~ 278 (352)
.. -.+..+.+.-.+.+++..|.... ..+++.....+++ +|.+.|.+. |+.++. .+|.-++++- |
T Consensus 293 ~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~-~~~yl~~ri~qv~----yl~~~L~~~-Gvpi~~-~Gghav~iDa~~~lp 365 (467)
T TIGR02617 293 LCVVQEGFPTYGGLEGGAMERLAVGLYDGM-NLDWLAYRINQVQ----YLVNGLEEI-GVVCQQ-AGGHAAFVDAGKLLP 365 (467)
T ss_pred hcccccCCcCcCchhHHHHHHHHhhhhhcc-cHHHHHHHHHHHH----HHHHHHHhC-CCcEEe-cCccEEEEehhhhCC
Confidence 21 12235788888888887787653 3666666665544 777777776 998888 8888888863 4
Q ss_pred CccCCcccCCCCCCChHHHHHHHHHccCEEe-ccCCCC-C-C----------CCeEEEEeec---CHHHHHHHHHHHHHH
Q 018665 279 TYYGSEAEGFGKIENSESLCRYLLDKAQVAL-VPGDAF-G-D----------DTCIRISYAA---SLTTLQAAVERIKKG 342 (352)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i-~~g~~~-~-~----------~~~iRi~~~~---~~~~l~~~~~~l~~~ 342 (352)
......+ .+..++.+|....||-- .-|+.. + . -..+|+.++. |.+.++...+.+..+
T Consensus 366 hip~~~f-------pa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~ 438 (467)
T TIGR02617 366 HIPADQF-------PAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438 (467)
T ss_pred CCChhhC-------cHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHH
Confidence 3332222 67889999998888742 222221 1 0 1479999987 889999999999888
Q ss_pred Hhh
Q 018665 343 LLT 345 (352)
Q Consensus 343 ~~~ 345 (352)
.+.
T Consensus 439 ~~~ 441 (467)
T TIGR02617 439 KEN 441 (467)
T ss_pred Hhh
Confidence 765
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-15 Score=135.76 Aligned_cols=255 Identities=15% Similarity=0.111 Sum_probs=182.4
Q ss_pred CCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC-----C---------CCEEEecCCCCC
Q 018665 7 SQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS-----P---------GDEVIIPAPFWV 71 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-----~---------~~~vl~~~~~~~ 71 (352)
.++..++. +....+++ -.+.+ ....=.+|+|+|+++..++.+... . ..+|+++...|.
T Consensus 96 ~p~a~~~E------~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~ 168 (460)
T COG0076 96 SPAAAELE------ERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHF 168 (460)
T ss_pred ChhHHHHH------HHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchh
Confidence 34455566 78888887 55544 445568899999999988776421 0 127999999999
Q ss_pred ChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeE--EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEec
Q 018665 72 SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL--LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 72 ~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~--i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD 149 (352)
++..++..+|++...+++... ++.+|++.+++++++++.. |+-+..+.++|.+-| +++|+++|+++ +++++||
T Consensus 169 s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDd---i~~ia~ia~~~-~i~lHVD 243 (460)
T COG0076 169 SFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDD---IEELADIAEEY-GIWLHVD 243 (460)
T ss_pred HHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEEecCCCCCccCC---HHHHHHHHHHc-CCcEEEE
Confidence 999999999999999999864 7789999999999887776 787888999999999 99999999999 9999999
Q ss_pred cccccccc--CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChh-HHHHHHhhhhcc---------cc--C
Q 018665 150 EIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQSQF---------TS--G 215 (352)
Q Consensus 150 ~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~~~~~~~~~~~---------~~--~ 215 (352)
.|++++.. ..........+ ...+-++.++||... ...++|+++.+.+ ...+......++ +. +
T Consensus 244 AA~GG~~~pf~~~~~~~~f~l---~~vdSIt~d~HK~g~-aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~s 319 (460)
T COG0076 244 AAFGGFLLPFLEPDGRWDFGL---EGVDSITVDGHKYGL-APIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGS 319 (460)
T ss_pred ccccceeecccCccchhhcCC---CCceEEEECcccccC-CCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeec
Confidence 99997643 11111111222 123366788999974 7788999987654 444433221111 11 1
Q ss_pred CChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCC
Q 018665 216 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 279 (352)
Q Consensus 216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~ 279 (352)
-+.....++...+.. ++.+.++++.++.-++.+++.+.|++.+.+++..+.....+.++.++
T Consensus 320 r~~~~~~~~~~~l~~--lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~ 381 (460)
T COG0076 320 RPGRQALALYANLRR--LGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKD 381 (460)
T ss_pred cchHHHHHHHHHHHH--hCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCC
Confidence 122122222222222 24688899999999999999999999866888876666667778755
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-14 Score=134.23 Aligned_cols=308 Identities=12% Similarity=0.092 Sum_probs=182.5
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEe
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i 87 (352)
.-..+.+ +.+|+.++ .....++++|+|.++..++.+++.+||.||++..||.+..+++...|..++++
T Consensus 195 G~i~eAe------~~aA~~fg------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl 262 (713)
T PRK15399 195 GPHLEAE------EYIARTFG------AEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWL 262 (713)
T ss_pred hHHHHHH------HHHHHHhC------CCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEe
Confidence 3345666 88888886 66788999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCc----ccCH-----HHHHhhccC-----CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc
Q 018665 88 PTRISENF----LLDP-----KVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153 (352)
Q Consensus 88 ~~~~~~~~----~~d~-----~~l~~~l~~-----~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~ 153 (352)
+... ..+ .+++ +.+++++++ +++++++.+|++ .|.+.+ ++.|.+.|. . -+|++||||+
T Consensus 263 ~P~~-n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd---~~~I~~~~g-~--~~ilvDEAhg 334 (713)
T PRK15399 263 KPTR-NALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY-DGLLYN---TDWIKQTLD-V--PSIHFDSAWV 334 (713)
T ss_pred cccc-cccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC-CceeeC---HHHHHHHhC-C--CEEEEeccch
Confidence 7543 222 2444 888888863 336788888854 799999 777777661 2 2456999998
Q ss_pred ccc-cCCC-CccccccCC-CCCCceEEEeccccccccccce-eEEEEcChhH-HHHHHhh-hhccccCCChHHHHHHHHH
Q 018665 154 HII-YAPA-THTSFASLP-GMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHF-VAACNKI-QSQFTSGASSISQKAGVAA 227 (352)
Q Consensus 154 ~~~-~~~~-~~~~~~~~~-~~~~~~i~~~s~sK~~g~~g~~-~g~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 227 (352)
... |.+. .+.+..... .....++++.|.||.+ +++. .+++-.+..+ .+++... ....+.+|+.+..+.+-.+
T Consensus 335 ah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL--~alTQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a 412 (713)
T PRK15399 335 PYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKML--AAFSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETA 412 (713)
T ss_pred hhhhcCcccCCcChhhCCCCCCeeeeeeeehhccc--cccchheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 632 2111 111111111 1112335599999998 4443 4555443322 1233322 2233445555554444443
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCC------ceecCCC-----------------------------CceE
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG------VKMSEPQ-----------------------------GAFY 272 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g------~~~~~~~-----------------------------~g~~ 272 (352)
... +....-+++.+...+....+++.+.++.+ +++..++ .-.-
T Consensus 413 ~~~--m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~K 490 (713)
T PRK15399 413 AAM--LRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVK 490 (713)
T ss_pred HHH--HHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCce
Confidence 332 10112344444455555555555554322 2333211 0011
Q ss_pred EEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEE--EeecCHHHHHHHHHHHHHHHhh
Q 018665 273 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI--SYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi--~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
+.+.+|+.. .....-.....+..+.+.|.+ +||.+.-.. ...+-+ +++.++++++++++.|.++-+.
T Consensus 491 ltI~t~g~~-~~g~~~~~Gi~g~~l~~~L~e-~gI~~E~~d----~~~vL~l~s~g~t~~~~~~L~~aL~~f~~~ 559 (713)
T PRK15399 491 VTILTPGMD-EQGNMSEEGIPAALVAKFLDE-RGIVVEKTG----PYNLLFLFSIGIDKTKAMGLLRGLTEFKRA 559 (713)
T ss_pred EEEEecCcc-cccccccCCCCHHHHHHHHHH-cCCEEEecC----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 223333210 000000112267788888865 488876542 344444 4444889999999999887554
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-15 Score=127.22 Aligned_cols=308 Identities=20% Similarity=0.238 Sum_probs=210.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
||++-.-+.++. +.||+++| ..+.|+...|- .++..++.+++++||-|.+.....+.....++....
T Consensus 134 FYGt~DvHldlE------~~iakF~G------~E~aivYs~gF-~ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlSRS 200 (467)
T KOG1358|consen 134 FYGTIDVHLDLE------KRIAKFMG------TEDAIVYSYGF-STIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSRS 200 (467)
T ss_pred ccccceeecccH------HHHHHhhC------Ccceeeecccc-chhhhcchhhhccCcEEEEehhhhHHHHHHHhhhhh
Confidence 577777778888 99999997 56677776665 557779999999999999999999889999998888
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCC-------------eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEec
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEK-------------SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~-------------~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD 149 (352)
.+.++..+ |++.+++.+.+. .+.|++....-++|.+.| +.+|.++..+| ...+|+|
T Consensus 201 ~i~~Fkhn-------dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p---l~~iv~lk~Ky-k~Rvild 269 (467)
T KOG1358|consen 201 TISYFKHN-------DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP---LPEIVKLKNKY-KFRVILD 269 (467)
T ss_pred eeEEecCC-------CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc---cHHHHHHHhhh-eEEEEEe
Confidence 88888743 667776666321 234555666778999999 99999999999 9999999
Q ss_pred ccccccccC--CCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhH--HHHHHhhhhccccCCChHHHHHHH
Q 018665 150 EIYEHIIYA--PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF--VAACNKIQSQFTSGASSISQKAGV 225 (352)
Q Consensus 150 ~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 225 (352)
|.++....+ |.....-...+. .+.+++++|+.-+++..| |+..++.-. ..++......++.+.++....++.
T Consensus 270 Es~SfG~lg~~GrGvteH~~v~~-~~iDiv~~sm~~alas~G---gFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~ 345 (467)
T KOG1358|consen 270 ESLSFGVLGKTGRGVTEHFGVPI-TDIDIVTASMETALASGG---GFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAI 345 (467)
T ss_pred cccccccccccCccccccCCCCc-cceeeeeecccccccccC---ceeecceeeEeeeeccccceeeeccCchhhhhhHH
Confidence 999864332 222222222331 356689999988886455 777774433 223444445566667777777777
Q ss_pred HHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHcc
Q 018665 226 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 305 (352)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (352)
.++.. .++-.++.+.++.....+.+.|+...++.+....-+.++.+.+.+..++..+. ..-.+++++....+
T Consensus 346 ~ai~i----~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e---~~lL~eivd~~i~~- 417 (467)
T KOG1358|consen 346 KAILI----EEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKE---EKLLEEIVDKCIAE- 417 (467)
T ss_pred HHHHH----HhhCcchhhhhhccccccchhhhcCCceEEecCcCCceeeeeecccccchHHH---HHHHHHHHHHHHhh-
Confidence 77765 44444455555555556677777665777776665666666665433221100 00133566666656
Q ss_pred CEEeccCCCC------CCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 306 QVALVPGDAF------GDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 306 gi~i~~g~~~------~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
++.+.-.... -.+..+||++.. ++||++++.+.|++....+
T Consensus 418 ~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~~ 466 (467)
T KOG1358|consen 418 GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASAV 466 (467)
T ss_pred cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 6666443221 125689999987 9999999999999987654
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-14 Score=127.00 Aligned_cols=269 Identities=13% Similarity=0.137 Sum_probs=187.5
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcCCeEEEecccCC-CCcccCHHHHHhhccCCeeEE
Q 018665 37 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRIS-ENFLLDPKVLESKLTEKSRLL 113 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i~~~~~-~~~~~d~~~l~~~l~~~~~~i 113 (352)
+-+++..|+|.+++.+...++.+++++++.....++-+ ..++..|...+....... ....+++++++. +++.+.+
T Consensus 72 ~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v 149 (365)
T PLN02452 72 EVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWEL--TPDAKFV 149 (365)
T ss_pred eEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcCC--CCCCcEE
Confidence 45677799999999999999998999988887776544 677788864444422211 112356666532 3467788
Q ss_pred EEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEecccccccccccee
Q 018665 114 ILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 192 (352)
Q Consensus 114 ~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~ 192 (352)
.+++....||+. .+ +.++. ++++|+|.+.+.. ..+..+.. ++ +...|..|.+|.+| +
T Consensus 150 ~~~hnETstGv~~~~---~~~i~-------~~~lvVDa~Ss~g----~~pidv~~----~~--v~~~saqK~lGP~G--l 207 (365)
T PLN02452 150 HICANETIHGVEFKD---YPDVG-------NVPLVADMSSNFL----SKPVDVSK----YG--VIYAGAQKNVGPSG--V 207 (365)
T ss_pred EECCCCCCCcEecCc---ccccC-------CCeEEEECCcccc----CcccCHHH----cC--EEEEecccccCCCC--e
Confidence 888888899996 55 44442 4789999998763 22233322 22 34579999998655 7
Q ss_pred EEEEcChhHHHHHHhh------------hhccccCCChHHHHHHHHHhcccCCChH-HHHHHHHHHHHHHHHHHHHhccc
Q 018665 193 GYIAGPKHFVAACNKI------------QSQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGEL 259 (352)
Q Consensus 193 g~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~ 259 (352)
|++++++++++++... ...+..+|+....+++.++++.- ..+ .++.+.++.+++.+++.+.|++.
T Consensus 208 ~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l--~~~gGl~~~~~r~~~~a~~l~~~l~~~ 285 (365)
T PLN02452 208 TIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDL--LAQGGLKAMEKRNIRKADLLYDAIDES 285 (365)
T ss_pred EEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999888764321 01122478888888888888752 122 58899999999999999999987
Q ss_pred CCceec--CC--CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHH
Q 018665 260 EGVKMS--EP--QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQ 333 (352)
Q Consensus 260 ~g~~~~--~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~ 333 (352)
+|+... .+ ++...+.+.+++. ....++.+.+.++ |+...+|... -+.+|+|+-. +.++++
T Consensus 286 ~G~y~~~~~~~~rs~~~vsF~~~~~-----------~~~~~f~~~~~~~-g~~~~~G~r~--~gg~R~s~yna~~~~~v~ 351 (365)
T PLN02452 286 NGFYVCPVEKSVRSLMNVPFTLGGS-----------ELEAEFVKEAAKA-GMVQLKGHRS--VGGMRASIYNAMPLAGVE 351 (365)
T ss_pred CCcccCCCChHHhCCeEEEEEcCCc-----------hhHHHHHHHHHHC-CCcccCCccc--cCceEEECcCCCCHHHHH
Confidence 676221 11 3445566666653 1567888887766 9999998654 3349999976 999999
Q ss_pred HHHHHHHHHHhh
Q 018665 334 AAVERIKKGLLT 345 (352)
Q Consensus 334 ~~~~~l~~~~~~ 345 (352)
++++.++++.++
T Consensus 352 ~L~~~m~~f~~~ 363 (365)
T PLN02452 352 KLVAFMKDFQAK 363 (365)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-14 Score=117.92 Aligned_cols=272 Identities=15% Similarity=0.179 Sum_probs=192.3
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHH-----HHHhcCCeEEEecccCCCCcccCHHHHHhhc
Q 018665 34 YTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPE-----MARIADATPVILPTRISENFLLDPKVLESKL 106 (352)
Q Consensus 34 ~~~~~i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~-----~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l 106 (352)
..+.++.++.+++-.++.++.+.++ .|++|+++...-++... .++..+.. ++ -...+.++++++.+
T Consensus 91 A~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~----~~~~~~P~~~~~~~ 163 (407)
T COG3844 91 ARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YD----LEGVIAPRALEEAI 163 (407)
T ss_pred CCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---cc----ceeeeChHHHHHhh
Confidence 6788999999999999888887654 46888877654444332 22233321 11 22235788999999
Q ss_pred cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccc
Q 018665 107 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 186 (352)
Q Consensus 107 ~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 186 (352)
++++.+|++++++.-||+.++ +.+|-++++++ +++++-|-+|+. |.-+..+.. .+-++-+++..|.++
T Consensus 164 ~dd~AvV~L~~V~y~TGql~d---m~aiT~~AH~~-galv~wDLAHsa----Gavp~~Lh~----~gaDfaigcsyKYLN 231 (407)
T COG3844 164 TDDVAVVLLSHVNYKTGQLLD---MRAITALAHQH-GALVGWDLAHSA----GAVPVDLHA----AGADFAIGCSYKYLN 231 (407)
T ss_pred ccceEEEEeccccccccceee---HHHHHHHHHhc-CceEEeehhccc----CCcceeecc----cCCCeeeeeeceecc
Confidence 999999999999999999999 99999999999 999999999986 322222222 455688999999994
Q ss_pred -cccceeEEEEcChhHHHHHH-----------------------hhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 187 -MTGWRLGYIAGPKHFVAACN-----------------------KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 187 -~~g~~~g~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
.|| ..+++...++..+... ...++...+++..+..++..+|+.- .+-.+.+++
T Consensus 232 gGPG-apa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDif--a~~~i~~lR 308 (407)
T COG3844 232 GGPG-APAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIF--ADVDITELR 308 (407)
T ss_pred CCCC-CceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhh--hhcCHHHHH
Confidence 244 3556655544433321 1111222345566666666666642 233478888
Q ss_pred HHHHHHHHHHHHHhccc-C--CceecCCCC----ceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 243 KAFRERRDFLVKSFGEL-E--GVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~-~--g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
++.-....++++.++.. + ++++..|.. |-.+.+..| ...++.+.|.++ ||.. .+
T Consensus 309 ~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp--------------~~~~V~qaLi~r-GVig----D~ 369 (407)
T COG3844 309 KKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP--------------HGYQVMQALIDR-GVIG----DF 369 (407)
T ss_pred HhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC--------------cHHHHHHHHHHc-Cccc----cc
Confidence 88888888888888753 2 667766643 555666665 688999999977 8753 46
Q ss_pred CCCCeEEEEeec---CHHHHHHHHHHHHHHHhhh
Q 018665 316 GDDTCIRISYAA---SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 316 ~~~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~ 346 (352)
..++.+|+.++. +-.|+-.+++.|.+++++.
T Consensus 370 R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 370 REPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred cCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence 679999999987 7799999999999999864
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-16 Score=137.77 Aligned_cols=237 Identities=19% Similarity=0.193 Sum_probs=158.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH---HHHHh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARI 79 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~---~~~~~ 79 (352)
-|+.++...+++ +.+++.++ .+..+++++||.++..++++++++++.|++..+.|.... .....
T Consensus 24 ~Yg~D~~~~~l~------~~i~~l~g-------~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ga~~~~ 90 (290)
T PF01212_consen 24 AYGEDPTTARLE------ERIAELFG-------KEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETGAIEEL 90 (290)
T ss_dssp CTTSSHHHHHHH------HHHHHHHT-------SSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTTHHHHH
T ss_pred ccCCChhHHHHH------HHHHHHcC-------CCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccchhhHh
Confidence 377788888888 99999985 566679999999999999999999999999998765333 33466
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCC-cccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNP-TGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~np-tG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
.|.+++.++.++ +..+++++|++.+.. ++++|++++++|. .|++++.+++++|.++|+++ |+.++.|.+.
T Consensus 91 ~G~~~~~l~~~~--~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~-gl~lhmDGAR 167 (290)
T PF01212_consen 91 SGAKLIPLPSDD--DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREH-GLPLHMDGAR 167 (290)
T ss_dssp TTCEEEEEBECT--GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHH-T-EEEEEETT
T ss_pred cCcEEEECCCcc--cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhC-ceEEEEehhh
Confidence 899999998753 256999999999853 5789999999885 58999999999999999999 9999999986
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHH-----HHH
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAG-----VAA 227 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 227 (352)
-.... .....++..+.. .-+.+..|++|.+|+++ -+.++.+++++++..................++ ..+
T Consensus 168 l~~a~-~~~~~~~~e~~~--~~D~v~~~~tK~~g~~~--Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~ 242 (290)
T PF01212_consen 168 LANAA-AALGVSLAEIAA--GADSVSFGGTKNGGAPG--GAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQFAA 242 (290)
T ss_dssp HHHHH-CHHHHHHHHHHT--TSSEEEEETTSTT-SSS--EEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHH
T ss_pred HHHhh-hcccccHHHHhh--hCCEEEEEEEccccccc--ceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhHHH
Confidence 53211 011122333221 23377888999887544 466678999877655443333221111111111 011
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceec
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 265 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 265 (352)
+.. .+.+ .....+-.++.+.+.+.|+.+ +..+.
T Consensus 243 l~~---l~~~-~~~~~~~~~~A~~La~~l~~~-~~~~~ 275 (290)
T PF01212_consen 243 LRA---LELW-LERARHANAMAKRLAAGLEAL-GGVLP 275 (290)
T ss_dssp HCH---EECS-HHHHHCHHHHHHCHHHCHHEE-CEEEE
T ss_pred HHH---HHhh-HHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence 111 0222 334455666778888888887 43343
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-13 Score=122.32 Aligned_cols=240 Identities=17% Similarity=0.132 Sum_probs=159.6
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEe
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i 87 (352)
.-..+.. +..|+.++ .....+++||+|.++..++.+++.+||.||++.+||.+....+-..|..++++
T Consensus 70 G~i~eAq------e~aA~~fg------Ad~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl 137 (557)
T COG1982 70 GPIKEAQ------ELAARVFG------ADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYL 137 (557)
T ss_pred ccHHHHH------HHHHHHhC------CCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEe
Confidence 3445677 88888886 66789999999999999999999999999999999999999999999999998
Q ss_pred cccCCCC----cccCHHHHHhhccC--Ce-eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 88 PTRISEN----FLLDPKVLESKLTE--KS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 88 ~~~~~~~----~~~d~~~l~~~l~~--~~-~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
....+.. .+++.+.+++.+.+ .. +++++.+|++ .|.+++ +++|.++++++ ++++.+|+++.... +.
T Consensus 138 ~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~-~a~v~~deah~~~~--~~ 210 (557)
T COG1982 138 EPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYN---LRKIVELLHHY-GAWVLYDEAHPAHF--DF 210 (557)
T ss_pred cCCCCccccccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeec---HHHHHHHHhhc-CceEEhhhcCcccc--cc
Confidence 8764432 34799999998853 44 7788888875 689999 99999999999 99999999987532 11
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcCh--h-HHHHHHhh-hhccccCCChHHHHHHHHHhcc-cCCCh
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--H-FVAACNKI-QSQFTSGASSISQKAGVAALGL-GYAGG 235 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~--~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~~~ 235 (352)
. ..+.......+.++++.|.+|.++ +....+++-... . -.+++... ....+.+|+.+..+.+-.+-.. +....
T Consensus 211 ~-~~l~~~~~~~~~~~~tqS~HK~l~-alSQaS~iHv~~~~~~~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~~G~ 288 (557)
T COG1982 211 S-PMLPESALNGGADFVTQSTHKLLA-ALSQASMIHVKDGRAVNHERFNEALMMHQSTSPSYPLMASLDVARMQEGNAGR 288 (557)
T ss_pred c-ccCcchhhhcCceEEEechhhhhh-hhhhhHHHhhCCCccCCHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhhhhH
Confidence 1 111112222467799999999985 443445554442 1 12233222 2223334444444333321111 00012
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 268 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~ 268 (352)
...++..+..-+.++.+++.+++++++.+..+.
T Consensus 289 ~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~ 321 (557)
T COG1982 289 ELWQEVIDEAIDFRKALRRLINEIGFFPVLQPE 321 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeeecccc
Confidence 222333455555666666777666566665443
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.8e-13 Score=117.74 Aligned_cols=268 Identities=10% Similarity=0.041 Sum_probs=181.4
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCEEE-ecCCCCCChH--HHHHhcCCeEEEecccCCCC--cccCHHHHHhhccCCeeE
Q 018665 38 QILVSNGAKQSILQAVLAVCSPGDEVI-IPAPFWVSYP--EMARIADATPVILPTRISEN--FLLDPKVLESKLTEKSRL 112 (352)
Q Consensus 38 ~i~~~~g~~~a~~~~~~~l~~~~~~vl-~~~~~~~~~~--~~~~~~g~~v~~i~~~~~~~--~~~d~~~l~~~l~~~~~~ 112 (352)
=++++.|+|.++..+...++.++++++ +....+++-. ..++..| ++..+......+ ..++++++ .++++.+.
T Consensus 70 Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~ 146 (364)
T PRK12462 70 VVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPF 146 (364)
T ss_pred EEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcE
Confidence 356667799999999999999888665 5555555433 5667777 555554322222 23456665 23446777
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEecccccccccccee
Q 018665 113 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 192 (352)
Q Consensus 113 i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~ 192 (352)
+.+++....+|...+ ++.+.+ ++++|+|.+.+.+. .+..+.. + .++..+..|.+|.+| +
T Consensus 147 v~~t~NETstGv~~~--------~~~~~~-~~llvvD~sS~~~s----~pid~~~----~--dvi~agsQKnlgP~G--l 205 (364)
T PRK12462 147 RHYVSNETVEGLQFP--------DAAGLP-DSPLIADMSSDFMS----RPFDVEA----Y--GMVYAHAQKNLGPAG--V 205 (364)
T ss_pred EEEccCCCCceEecC--------cccccC-CCeEEEEcCchhhC----CCCChHH----c--cEEEeeccccCCCCc--e
Confidence 777777789999986 222246 89999999877532 1222221 2 488888999999555 7
Q ss_pred EEEEcChhHHHHHHhh------------hhccccCCChHHHHHHHHHhcccCCChH--HHHHHHHHHHHHHHHHHHHhcc
Q 018665 193 GYIAGPKHFVAACNKI------------QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGE 258 (352)
Q Consensus 193 g~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~ 258 (352)
+.++.+++.+++.... ......+|+.+..+++..+++-. .++ .++.+.++.++..+.+.+.+.+
T Consensus 206 tvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i--~~e~GGl~~~~~r~~~ka~~ly~~id~ 283 (364)
T PRK12462 206 TVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWI--RDEIGGVHAMRDINARKAAMLYATLDA 283 (364)
T ss_pred EEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHH--HHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999887664321 11122367888888888887642 134 7889999999999999999998
Q ss_pred cCCceecC----CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHH
Q 018665 259 LEGVKMSE----PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTL 332 (352)
Q Consensus 259 ~~g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l 332 (352)
.+++.... .++-+.+.+++++.. ...++.+.+.++ |+.-..| ++..+.+|+|+-. +.|.+
T Consensus 284 ~~~~~~~~~~~~~RS~mnv~f~~~~~~-----------l~~~f~~~a~~~-gl~~lkG--hr~vgg~Ras~yna~~~e~v 349 (364)
T PRK12462 284 LNEVIDCHAHRAARSTMNVAFRFRQPR-----------LDTLFKEQSTEA-GFCGLSG--HRSIGGIRASLYNAVSEQAV 349 (364)
T ss_pred CCCcccCCCChhhcCcceEEEEcCCHH-----------HHHHHHHHHHHC-CCccccC--CcccCceEEEcCCCCCHHHH
Confidence 86554432 233444555655431 456777776655 8776554 3446789999976 88999
Q ss_pred HHHHHHHHHHHhh
Q 018665 333 QAAVERIKKGLLT 345 (352)
Q Consensus 333 ~~~~~~l~~~~~~ 345 (352)
+++++.++++-++
T Consensus 350 ~~L~~fm~~f~~~ 362 (364)
T PRK12462 350 SRLCAFLKDFAIR 362 (364)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-14 Score=124.54 Aligned_cols=242 Identities=14% Similarity=0.130 Sum_probs=149.2
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc--------CCCCEEEecCCCCCChHH-HHHhcC---------
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC--------SPGDEVIIPAPFWVSYPE-MARIAD--------- 81 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~~~~vl~~~~~~~~~~~-~~~~~g--------- 81 (352)
..+++.+. ..+ -..+.+++++|+++|++.+++... ....+|+....+|++... .+...+
T Consensus 62 ~~la~~L~~~~p--~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~ 139 (339)
T PF00202_consen 62 AELAEKLAELFP--GGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFG 139 (339)
T ss_dssp HHHHHHHHHHSS--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTC
T ss_pred hhhhhhhhhccc--cccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcccccccc
Confidence 56666665 332 145799999999999999998765 134688888888876543 222111
Q ss_pred ---CeEEEecccCCCC---cccCHHHHHhh----ccCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecc
Q 018665 82 ---ATPVILPTRISEN---FLLDPKVLESK----LTEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDE 150 (352)
Q Consensus 82 ---~~v~~i~~~~~~~---~~~d~~~l~~~----l~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~ 150 (352)
..+..+|.+.... .....+.+++. -.+++.++++...+...|.. +|.+.+++|.++|+++ |+++|+||
T Consensus 140 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DE 218 (339)
T PF00202_consen 140 PLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREH-GILLIADE 218 (339)
T ss_dssp SSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHT-T-EEEEEE
T ss_pred ccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehccccccc-ccceeccc
Confidence 2334455432110 00011112222 24567778877777666644 5678999999999999 99999999
Q ss_pred cccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcc
Q 018665 151 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
++.++...|.. .......-.+| +.+++|.++ +|.++|.+++++++.+.+.......+++.+++.+.++.+.++.
T Consensus 219 V~tG~gRtG~~-~a~~~~gv~PD----iv~~gK~l~-gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~ 292 (339)
T PF00202_consen 219 VQTGFGRTGKF-FASEHYGVDPD----IVTFGKGLG-GGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEI 292 (339)
T ss_dssp TTTTTTTTSSS-SGHHHHTSSSS----EEEEEGGGG-TTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHH
T ss_pred ccccccccCCc-cceecccccCc----ccccccchh-hhhhcccccccchhhccccccccccccccchHhhhhhhhHHHh
Confidence 99999777753 22222222222 344569998 7799999999999998876655667788999999999999886
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhccc----CCceecCCCCceEEEeec
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMSEPQGAFYLFIDF 277 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~g~~~~~~~ 277 (352)
-. -+++.++++++-+++.+.|+++ +-+.-+. .-|.++.+++
T Consensus 293 ~~-----~~~~~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-g~Gl~~~ie~ 337 (339)
T PF00202_consen 293 LE-----EEDLLERVRELGERLREGLRELAARYPLIGEVR-GIGLMIGIEL 337 (339)
T ss_dssp HH-----HTTHHHHHHHHHHHHHHHHHHHHHHTTTEEEEE-EETTEEEEEE
T ss_pred hc-----cHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-eeCeEEEEEE
Confidence 21 1223344444444555544432 2233332 3344455554
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-12 Score=125.65 Aligned_cols=280 Identities=9% Similarity=0.118 Sum_probs=192.1
Q ss_pred CChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc---CCCCEEEecCCCCCChHHHHH----hcC
Q 018665 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPEMAR----IAD 81 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~~~~~vl~~~~~~~~~~~~~~----~~g 81 (352)
....|+.++.|.+.++++.+ ++..|.-+..++|++-+.++++.. +++++|++++..|+.+...++ ..|
T Consensus 104 sQG~Le~l~e~Qt~i~eLtG-----m~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g 178 (939)
T TIGR00461 104 SQGRLEALLNFQTVVSDLTG-----LPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFG 178 (939)
T ss_pred hhHHHHHHHHHHHHHHHHHC-----CChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcC
Confidence 44568888999999999998 778888888899988887776642 234789999999998886555 778
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
++++.++ +++|++.+ ++.++++.+|+. .|.+.+ +++|++++++. |.+++++.-...
T Consensus 179 ~~v~~~~----------~~~l~~~~--~~~~v~~q~Pn~-~G~ied---~~~i~~~~h~~-gal~~~~ad~~a------- 234 (939)
T TIGR00461 179 IEVIVVD----------CSDIKKAV--DVFGCLLQYPAT-DGSILD---YKQLIDALHSH-KSLVSVAADLMA------- 234 (939)
T ss_pred cEEEEEc----------HHHHhhcC--CEEEEEEECCCC-CeEEec---HHHHHHHHHHc-CCEEEEEechHH-------
Confidence 8888874 34465555 567777777765 678776 99999999999 999998543221
Q ss_pred ccccccCCCCCCceEEEeccccccc----cccceeEEEEcChhHHHHHHh----------------------------hh
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNK----------------------------IQ 209 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g----~~g~~~g~l~~~~~~~~~~~~----------------------------~~ 209 (352)
..+...+.+++-+|++++. |.|| .+|...|++.+++++.+.+.. ..
T Consensus 235 -l~ll~~Pge~GaDi~vg~~-q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRek 312 (939)
T TIGR00461 235 -LTLLTPPGHYGADIVLGSS-QRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDK 312 (939)
T ss_pred -hCCcCCHHHcCCcEEeeCC-CccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccc
Confidence 1122223334555776654 3333 346678999888887776421 00
Q ss_pred hccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE--EEeecCCccCCcccC
Q 018665 210 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEG 287 (352)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~ 287 (352)
..++.+.+....+..+.+... ....+.++++.++...+..++.+.|++. |+++..+ .+| +.++++..
T Consensus 313 AtSNICt~qaL~a~~a~~Y~~-~~G~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~~~~--~fF~~~~v~~~~~------- 381 (939)
T TIGR00461 313 ATSNICTAQVLLANVASSYCV-YHGPKGLKNIARRIHSLTSILANGLEND-PHELINK--TWFDTLTVKVGNG------- 381 (939)
T ss_pred cCcchhHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--CccceEEEEeCCC-------
Confidence 011112233222222221111 1247889999999999999999999985 9888755 333 33455322
Q ss_pred CCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHH
Q 018665 288 FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 340 (352)
Q Consensus 288 ~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~ 340 (352)
++.++.+.+.++ ||.+... .++.+++|+.. +.+|++.+++.+.
T Consensus 382 -----~~~~i~~~~~~~-gi~l~~~----~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 382 -----ISSELLKAAEEF-NINLRAV----DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred -----CHHHHHHHHHHC-CCeeeec----CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 678899998876 8887552 35689999987 8899999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-12 Score=115.80 Aligned_cols=283 Identities=16% Similarity=0.221 Sum_probs=163.7
Q ss_pred CChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh---cCCCCEEEecCCCCCChHHHHH----hcC
Q 018665 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYPEMAR----IAD 81 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~~~~~~vl~~~~~~~~~~~~~~----~~g 81 (352)
....|+.+++|...+++..+ ++..+.-+-.+++++-+.+..+. .++.++|+++...|+.+...++ ..|
T Consensus 105 sQG~Lq~lfe~Qs~i~eLTG-----mdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g 179 (429)
T PF02347_consen 105 SQGRLQALFEYQSMICELTG-----MDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLG 179 (429)
T ss_dssp BHHHHHHHHHHHHHHHHHHT-----SSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCC
T ss_pred HHHHHHHHHHHHHHHHHhhC-----CCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCC
Confidence 34467788899999999997 66666677778887777665553 2334699999999999887555 478
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
++++.++.+..+. .| ++++.+|++.+||+ .|..-+ +++|.++++++ |.++++ .+.- ...
T Consensus 180 ~~iv~~~~~~~~~--~d--------~~~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~-gal~~~-~ad~-~aL---- 238 (429)
T PF02347_consen 180 IEIVEVPLDEDGT--TD--------DDDTAAVMVQNPNT-FGVFED---IKEIADIAHAA-GALVIV-GADP-NAL---- 238 (429)
T ss_dssp EEEEEE-BBTTCS--B---------STTEEEEEEESS-T-TSB--T---HHHHHHHHHHT-T-EEEE-CGGC-CGC----
T ss_pred eEEEEecccccCC--cc--------ccCeEEEEeecCCC-CceEee---HHHHHHHHHHc-CCEEEE-ecCH-HHH----
Confidence 9999998874332 23 66899999999986 678777 99999999999 999886 3321 111
Q ss_pred ccccccCCCCCCceEEEeccccccc----cccceeEEEEcChhHHHHHH----------------------------hhh
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACN----------------------------KIQ 209 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g----~~g~~~g~l~~~~~~~~~~~----------------------------~~~ 209 (352)
....-+.+++-+|++++ +|.|| .+|..+|++.+++++++.+. +..
T Consensus 239 --~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReK 315 (429)
T PF02347_consen 239 --GGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREK 315 (429)
T ss_dssp --CTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCC
T ss_pred --hCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccc
Confidence 11122233455588776 67664 34677899999888777643 111
Q ss_pred hccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE-EEeecCCccCCcccCC
Q 018665 210 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY-LFIDFSTYYGSEAEGF 288 (352)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~ 288 (352)
..++.+.|....+..+.+.- ..++.+.++++......+..++.+.|++..+..+. ..-|+ .++..++..
T Consensus 316 AtSNIctnqaL~A~~a~~Yl-~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~--~~~f~e~v~~~~~~~------- 385 (429)
T PF02347_consen 316 ATSNICTNQALLALAAAIYL-AYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFD--NPFFFEFVVVFSKDK------- 385 (429)
T ss_dssp STT---SS-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSS--SSSBSSEEEEESS-H-------
T ss_pred hhhhhhhhHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC--CCCceeeeeecCCcH-------
Confidence 12233344444332222211 11247899999999999999999999986333332 22232 222222100
Q ss_pred CCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHH
Q 018665 289 GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERI 339 (352)
Q Consensus 289 ~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l 339 (352)
...++.++.... |+... +...+++-+++.- +.+||+++++.|
T Consensus 386 ----~~~~l~~~~~~~-gl~~~----~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 386 ----EVEELLKRGIEG-GLNLR----YPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp ----HHHHHHHTT-----EEEG----GG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred ----HHHHHHHHHHhc-CCCcc----ccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 233344444432 54332 2235578888876 789999998864
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-12 Score=113.13 Aligned_cols=277 Identities=17% Similarity=0.172 Sum_probs=189.0
Q ss_pred EEeCChHHHHHHHHHHh---cC--CC---CEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCee
Q 018665 40 LVSNGAKQSILQAVLAV---CS--PG---DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR 111 (352)
Q Consensus 40 ~~~~g~~~a~~~~~~~l---~~--~~---~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~ 111 (352)
..|.|+|+++..+-+.. .. ++ .+++.+...+-.+...++.++++++.+|+++ +++.+|+.++.+.++++++
T Consensus 142 ~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~-~~~~~D~~k~~~~i~eNti 220 (491)
T KOG1383|consen 142 CGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPLDE-GDYRVDPGKVVRMIDENTI 220 (491)
T ss_pred ccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeeccc-cceEecHHHHHHHhccceE
Confidence 55678888855444432 11 12 5788888888889999999999999999986 7889999999999999999
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHh-CCCEEEEecccccccccC-CCCccccccCCCCCCceEEEecc----cccc
Q 018665 112 LLILCSPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYA-PATHTSFASLPGMWERTLTVNGF----SKAF 185 (352)
Q Consensus 112 ~i~i~~p~nptG~~~~~~~l~~l~~~~~~-~~~~~livD~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~s~----sK~~ 185 (352)
.++.+.|+.|+|..-+ +++|.++..+ + ++++.+|.+-++|... +. .... ....++..+.|. +|.
T Consensus 221 ~lv~~~~~~p~G~~e~---ve~l~~l~~e~w-~ipiHvDa~~GgFi~p~~~--~~~~---~fdFr~p~V~Sisa~~HKY- 290 (491)
T KOG1383|consen 221 MLVGSLPNFPTGEIED---VEKLADLLLEIW-DIPIHVDACLGGFINPAGY--LNEE---EFDFRVPGVTSISADGHKY- 290 (491)
T ss_pred EEEEEcCCCCccchhh---HHHHHHHHHHHh-CCceeecccCccccccccc--cCcc---ccccCCCCceeEeecccee-
Confidence 9999999999999988 8888998888 9 9999999999887542 11 1111 111233444443 454
Q ss_pred ccccceeEEEE-cChhHHH-H-------HHhhhhccccCC-----ChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHH
Q 018665 186 AMTGWRLGYIA-GPKHFVA-A-------CNKIQSQFTSGA-----SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 251 (352)
Q Consensus 186 g~~g~~~g~l~-~~~~~~~-~-------~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
|+..-+.+|++ .++++.. + +......++... ...+|.+..-.+ +.+...+..+++.+....
T Consensus 291 Gl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~l-----G~eGY~~~~~~ive~~~~ 365 (491)
T KOG1383|consen 291 GLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSL-----GEEGYRENTQNIVETARK 365 (491)
T ss_pred eeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHH
Confidence 55555678877 3333322 1 112222222222 222222222222 467778888889999999
Q ss_pred HHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec---C
Q 018665 252 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---S 328 (352)
Q Consensus 252 l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~---~ 328 (352)
+++.+++++++.++.++.--++...-... +..++.+.|.+. |..+..-. .|..+.+++.. .
T Consensus 366 l~egie~i~~i~i~gkp~vs~~~~~s~~~------------~i~elsd~l~~~-GW~lnalq---~P~a~Hi~vt~~~~~ 429 (491)
T KOG1383|consen 366 LREGIENIKGIKIVGKPLVSFILFGSNDV------------NIFELSDLLRKK-GWILNALQ---FPAAIHICVTRVHAR 429 (491)
T ss_pred HHHhhhccccceecCCCcEEEEEccCCcc------------chhhhhHHHHhc-CcCccccC---CCCceEEEEEeeecc
Confidence 99999999899998765444343332221 677888887765 87765432 35567777765 5
Q ss_pred HHHHHHHHHHHHHHHhhhCC
Q 018665 329 LTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 329 ~~~l~~~~~~l~~~~~~~~~ 348 (352)
++-.++++..|+++++++..
T Consensus 430 ~~~A~~~v~Di~~~~~el~~ 449 (491)
T KOG1383|consen 430 EDVADRFVADIRKVVEELKS 449 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56678999999999988755
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-12 Score=114.83 Aligned_cols=253 Identities=17% Similarity=0.151 Sum_probs=161.5
Q ss_pred CCCChhhhccchhhHHHHHHHH-hcCCCC-----CCCcEEEeCChHHHHHHHHHHhcC--------------CCCEEEec
Q 018665 7 SQGTLQMRVLWSFVQQFVINLK-ENGLSY-----TPDQILVSNGAKQSILQAVLAVCS--------------PGDEVIIP 66 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~-~~~~~~-----~~~~i~~~~g~~~a~~~~~~~l~~--------------~~~~vl~~ 66 (352)
.+...+++ +.+.+++. -.|++. +...=++|+|+|+++..++.+..+ +.-.|++.
T Consensus 74 ~P~~~~~E------~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s 147 (373)
T PF00282_consen 74 SPAATEIE------REVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVS 147 (373)
T ss_dssp SHHHHHHH------HHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEE
T ss_pred ccccccch------HHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccc
Confidence 34445566 77777877 666662 124568899999999888766421 11257777
Q ss_pred CCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccC---C---eeEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 018665 67 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---K---SRLLILCSPSNPTGSVYPKNLLDEIARIVAK 140 (352)
Q Consensus 67 ~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~---~---~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~ 140 (352)
.-.|.++..++...|+.++.||+++ ++.+|+++|++++.+ + +.+|+.+..+..+|.+-| +++|+++|++
T Consensus 148 ~~aH~S~~Kaa~~lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~---l~~i~~i~~~ 222 (373)
T PF00282_consen 148 EQAHYSIEKAARILGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP---LEEIADICEK 222 (373)
T ss_dssp TTS-THHHHHHHHTTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S---HHHHHHHHHH
T ss_pred cccccHHHHhcceeeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCcccccccC---HHHHhhhccc
Confidence 7799999999999999999999985 556999999998853 2 334555666888999988 9999999999
Q ss_pred CCCEEEEecccccccccC-CCCccccccCCCCCCceEEEeccccccccccceeEEEEcChh-HHHHHHhh----hh----
Q 018665 141 HPRLLVLSDEIYEHIIYA-PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKI----QS---- 210 (352)
Q Consensus 141 ~~~~~livD~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~~~~~~~----~~---- 210 (352)
+ |+++.||.++++..+- .........+ ..-+-+..++||.++ ....+|+++.+++ .+...... ..
T Consensus 223 ~-~~wlHVDaA~gg~~~~~~~~~~~~~gi---~~adSit~d~HK~l~-~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~ 297 (373)
T PF00282_consen 223 Y-NIWLHVDAAYGGSALLSPEYRHLLFGI---ERADSITIDPHKWLG-VPYGCGVLLVRDKSDLRDAFSINADYLGNDDR 297 (373)
T ss_dssp C-T-EEEEEETTGGGGGGHCTTGGGGTTG---GGESEEEEETTTTTS--SSS-EEEEESSGGGHHGGGEEEETCTT-S-S
T ss_pred c-ceeeeeccccccccccccccccccccc---ccccccccchhhhhc-CCccceeEEeecccchHHHhccChhhhccccc
Confidence 9 9999999999983321 1111111111 122356778999998 5578898876553 33322100 00
Q ss_pred ---------ccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEee
Q 018665 211 ---------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 276 (352)
Q Consensus 211 ---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~ 276 (352)
..+...+. ...++...+.....+.+.+++..++..+..+++.+.|++.++++++.+.....+.++
T Consensus 298 ~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr 371 (373)
T PF00282_consen 298 ESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFR 371 (373)
T ss_dssp SS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEE
T ss_pred ccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEE
Confidence 01112222 222222222211124677888899999999999999999988888865554445444
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.1e-13 Score=109.40 Aligned_cols=295 Identities=13% Similarity=0.117 Sum_probs=180.1
Q ss_pred CCcEEEeCChHHHHHHHHHHh---cCCCCEEEecCCCCCChHHHHHh-------cC---CeEEEec---ccCC--CCc--
Q 018665 36 PDQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYPEMARI-------AD---ATPVILP---TRIS--ENF-- 95 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l---~~~~~~vl~~~~~~~~~~~~~~~-------~g---~~v~~i~---~~~~--~~~-- 95 (352)
-+-+++++|+++|++.+++.. .+. ..+++.+..|+++....-. .| .++.++. .++- +.+
T Consensus 102 Lsvc~F~NSGSEANDLALRLAR~ftkh-qDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~ 180 (452)
T KOG1403|consen 102 LSVCFFVNSGSEANDLALRLARNFTKH-QDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRD 180 (452)
T ss_pred ceEEEEecCCchhhHHHHHHHHhhccc-CceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCcccccccccc
Confidence 457899999999999998864 334 4456666666665533211 11 1112221 1110 000
Q ss_pred ---------ccCHHHHHhhcc------CCeeEEEEcCCCCCcccCCCHH-HHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 96 ---------LLDPKVLESKLT------EKSRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 96 ---------~~d~~~l~~~l~------~~~~~i~i~~p~nptG~~~~~~-~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
..-.+.+++.+. .+..+.+-.+.++-.|++.|+. ..+++++..+.+ |.+.|.||++.+|+..|
T Consensus 181 ~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~a-GGv~IaDEVQvGFGRvG 259 (452)
T KOG1403|consen 181 KMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSA-GGVCIADEVQVGFGRVG 259 (452)
T ss_pred ccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcC-CCeEEeehhhhcccccc
Confidence 011233444332 1334445455677788876654 799999999999 99999999999998877
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHh--hhhccccCCChHHHHHHHHHhcccCCChHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
...+++.-. +-+.-+.++.|.+| .|.+++.+++.+++.+.+.. ...+.+++.|+.+.++..+.+..- .++.
T Consensus 260 ~hyWafq~y----~fiPDIVtmgKpmG-NGhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~--e~E~ 332 (452)
T KOG1403|consen 260 SHYWAFQTY----NFIPDIVTMGKPMG-NGHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVC--EDEN 332 (452)
T ss_pred hhhhhhhhh----ccccchheecccCC-CCCeeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHH--hhhh
Confidence 655554432 22233677889999 99999999999999998865 455667899999999988888752 1344
Q ss_pred HHHHHHHHHHHHHHHHHHhccc-CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 238 VSKMVKAFRERRDFLVKSFGEL-EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
+++...++-.....+...++.. +-+.-+ ...|.|+-+++-+.-..+.+.. ..+.-+..+|.+.++|++..-+.
T Consensus 333 Lq~ha~~vG~~L~~lL~~~k~kh~~IGDv-RGvGLFiGIdLVkD~~tRtP~t---k~A~~~v~rlke~y~VLlsaDGP-- 406 (452)
T KOG1403|consen 333 LQEHAQQVGEKLEVLLRRLKQKHECIGDV-RGVGLFIGIDLVKDRKTRTPDT---KEAHWVVNRLKELYRVLLSADGP-- 406 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccceecc-ccceEEEeeeeecccccCCCcH---HHHHHHHHHHHHhhhEEEecCCC--
Confidence 5554444444333333334321 112111 2346666666532111111000 13556778888888999876432
Q ss_pred CCCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 317 DDTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 317 ~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
..+.+.|-++. ++++.++.+..|.+++.-
T Consensus 407 h~NilKiKPPmCFneena~e~v~~ld~iLT~ 437 (452)
T KOG1403|consen 407 HRNILKIKPPMCFNEENADEFVLGLDEILTV 437 (452)
T ss_pred CCceeecCCCcccChhhHHHHHHHHHHHHHH
Confidence 23456665443 888888888888777753
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-11 Score=105.49 Aligned_cols=317 Identities=15% Similarity=0.144 Sum_probs=211.6
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCC-----CEEEecCCCCCCh-HHHH
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-----DEVIIPAPFWVSY-PEMA 77 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~-----~~vl~~~~~~~~~-~~~~ 77 (352)
|+.+.++..|. ++..+.++ -+.++.+..+..|-++.+..+.+++ .+.++++..|+.+ ....
T Consensus 75 Yagsrs~~~L~------~avkdifG-------fq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~ 141 (471)
T COG3033 75 YAGSRSYYALA------DAVKDIFG-------FQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHI 141 (471)
T ss_pred hcccccHHHHH------HHHHHhcC-------ceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHH
Confidence 66777777788 88888875 4778889999898888888776543 4556666666544 4567
Q ss_pred HhcCCeEEEecccCCCC--------cccCHHHHHhhccC----CeeEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCE
Q 018665 78 RIADATPVILPTRISEN--------FLLDPKVLESKLTE----KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRL 144 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~--------~~~d~~~l~~~l~~----~~~~i~i~~p-~nptG~~~~~~~l~~l~~~~~~~~~~ 144 (352)
+..|..++-+++++..+ ..+|++.|++.+++ ++..|++.-. |.-.|+..+.+.+++..++|++| ++
T Consensus 142 ~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky-~i 220 (471)
T COG3033 142 QINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKY-DI 220 (471)
T ss_pred HhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHc-CC
Confidence 78888888888776443 23789999999963 4555555433 55788999999999999999999 99
Q ss_pred EEEecccccc-ccc------CCCCccccccCCCC--CCceEEEeccccccccccceeEEEEcChh----HHHHHHhhh--
Q 018665 145 LVLSDEIYEH-IIY------APATHTSFASLPGM--WERTLTVNGFSKAFAMTGWRLGYIAGPKH----FVAACNKIQ-- 209 (352)
Q Consensus 145 ~livD~~~~~-~~~------~~~~~~~~~~~~~~--~~~~i~~~s~sK~~g~~g~~~g~l~~~~~----~~~~~~~~~-- 209 (352)
+++.|.+... ..| .+....+...+... .--+-++.|.-|. |+.-+ .|++..+.+ +...++...
T Consensus 221 pvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD-~lvnm-GGfl~~~D~~~fDvy~~~~~~~V~ 298 (471)
T COG3033 221 PVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKD-GLVNM-GGFLCFKDDSFFDVYEECRTLVVV 298 (471)
T ss_pred cEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeecccc-ceecc-ccEEEecCccHHHHHHHHHhheEe
Confidence 9999988541 111 11122333322110 0011334555554 33321 256655544 444444321
Q ss_pred ---hccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCC-cc
Q 018665 210 ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EA 285 (352)
Q Consensus 210 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~ 285 (352)
..+..+.+.-.+.+++..|..... .+|++.+..+++ +|.+.|++. |+.++.|.+|.-++++..+.... ..
T Consensus 299 ~eG~~tYGgl~GrdmealAvGL~e~~~-~~yl~~Rv~Qv~----YL~~~l~~~-GVpi~~paGGHavfvda~~~lphip~ 372 (471)
T COG3033 299 QEGFPTYGGLAGRDMEALAVGLREGVN-FDYLAHRVAQVQ----YLADGLEEA-GVPIVQPAGGHAVFVDAGKFLPHIPA 372 (471)
T ss_pred eccccccCcccchhHHHHHHHHHHhcC-cHHHHHHHHHHH----HHHHHHHhc-CCeeEecCCCceEEeehhhhcCCCCh
Confidence 233456777788888888776543 678888777665 777888887 99999999999888874322211 11
Q ss_pred cCCCCCCChHHHHHHHHHccCEEeccCCCCCC-------------CCeEEEEeec---CHHHHHHHHHHHHHHHhhh
Q 018665 286 EGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------DTCIRISYAA---SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-------------~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~ 346 (352)
+.+ .++.++.+|.++.||-..--+.+.. -..+|+.++. +.+.+|-.++.+++..+.-
T Consensus 373 eqF----paqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~ 445 (471)
T COG3033 373 EQF----PAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENA 445 (471)
T ss_pred hhC----cHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhcc
Confidence 222 6788999999999986544333321 1469999987 8889999999888887654
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-11 Score=101.77 Aligned_cols=170 Identities=17% Similarity=0.252 Sum_probs=112.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEe---CChHHHHHHHHHHhcCCCCEEEec-CCCCCChHHH----------HHhcCCeEEE
Q 018665 21 QQFVINLKENGLSYTPDQILVS---NGAKQSILQAVLAVCSPGDEVIIP-APFWVSYPEM----------ARIADATPVI 86 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~---~g~~~a~~~~~~~l~~~~~~vl~~-~~~~~~~~~~----------~~~~g~~v~~ 86 (352)
+..|+.++ .+.-++- -|+|+|+..++..++++||+++.. ..-|..+... ++.+|++...
T Consensus 61 ~iyA~vfg-------aE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~ 133 (403)
T PF06838_consen 61 RIYADVFG-------AEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYRE 133 (403)
T ss_dssp HHHHHHCT--------SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE
T ss_pred HHHHHHhC-------chhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEE
Confidence 67777764 4443333 588999999999999999998854 4555554433 4678999999
Q ss_pred ecccCCCCcccCHHHHHhhccCCeeEEEEcCC-CCCcccCCCHHHHHHHHHHHHh-CCCEEEEecccccccccCCCCccc
Q 018665 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSP-SNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 87 i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p-~nptG~~~~~~~l~~l~~~~~~-~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
+++.++ ..+|.+.++++++++++++++--. .+..=..++.++++++++++++ +|+++++||++|++|. ....+.
T Consensus 134 v~L~~d--g~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFv--E~~EP~ 209 (403)
T PF06838_consen 134 VPLTED--GTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFV--ETQEPT 209 (403)
T ss_dssp --B-TT--SSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTT--SSS-GG
T ss_pred EeecCC--CCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceec--cccCcc
Confidence 999854 459999999999999999887544 3444455788889999998875 3799999999999875 322222
Q ss_pred cccCCCCCCceEEEeccccccccccc--eeEEEEcChhHHHHHHhh
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGW--RLGYIAGPKHFVAACNKI 208 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~--~~g~l~~~~~~~~~~~~~ 208 (352)
- .+-+++.+|+=|..| +|+ -.||++++.+++++....
T Consensus 210 ~------vGADl~aGSLIKNpG-GgiAptGGYIaGr~~lVe~~a~R 248 (403)
T PF06838_consen 210 E------VGADLMAGSLIKNPG-GGIAPTGGYIAGRKDLVERAAYR 248 (403)
T ss_dssp G------GT-SEEEEETTSGGG-TTT-SS-EEEEESHHHHHHHHHH
T ss_pred c------cchhheeccceeCCC-CCccCcCCEEechHHHHHHHHhh
Confidence 2 244499999999997 664 578999999999987543
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=98.63 Aligned_cols=287 Identities=15% Similarity=0.130 Sum_probs=176.4
Q ss_pred hcCCCCCCCcEEEe-CChHHHHHHHHHHhcCCCCEEE---ecCCCCCChHHHHHhcC--C-----eEEEecccCCCCccc
Q 018665 29 ENGLSYTPDQILVS-NGAKQSILQAVLAVCSPGDEVI---IPAPFWVSYPEMARIAD--A-----TPVILPTRISENFLL 97 (352)
Q Consensus 29 ~~~~~~~~~~i~~~-~g~~~a~~~~~~~l~~~~~~vl---~~~~~~~~~~~~~~~~g--~-----~v~~i~~~~~~~~~~ 97 (352)
-++.+.+...|-+. -|++-|+..+..++++++++|- +|+..|.++-..-.... . +--++.+++ ...-+
T Consensus 98 aF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~-~TG~I 176 (477)
T KOG2467|consen 98 AFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDP-STGYI 176 (477)
T ss_pred HhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCC-CCCce
Confidence 34443333333222 4556778889999999999987 45555544432222111 1 112233443 33458
Q ss_pred CHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCCCccccccCCCCCCce
Q 018665 98 DPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 98 d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
|.|.|++.... ++++||.-...+ ...++ ..++.++|.+. |.+++.|-+|- ++...+..+.+|.. .+
T Consensus 177 DYD~Le~~A~~frPk~iiaG~SaY--~R~~D---YaR~R~Iad~~-gA~Lm~DMAHISgLVAA~vipsPFey------~D 244 (477)
T KOG2467|consen 177 DYDKLEKTATLFRPKLIIAGTSAY--SRLID---YARFRKIADKV-GAYLMADMAHISGLVAAGVIPSPFEY------CD 244 (477)
T ss_pred ehHHHHHHHHhcCCcEEEeccccc--hhhcc---HHHHHHHHHhc-CceeehhhhhHHHHHhcccCCCcccc------cc
Confidence 99999986654 778777532222 23445 78888889999 99999999975 45445554444432 33
Q ss_pred EEEeccccccccccceeEEEEcChh---------------HHHHHHhh-hhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKH---------------FVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~---------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
|++++.+|++ .|.|.|.|.-++. +-+++... ....-.+|+.....+++.+|.+.. ...+.
T Consensus 245 iVTTTTHKsL--RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~--tpefk 320 (477)
T KOG2467|consen 245 IVTTTTHKSL--RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAM--TPEFK 320 (477)
T ss_pred eeeccccccc--cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhC--CHHHH
Confidence 8999999987 7888898875431 11112111 111114566666667777777632 45567
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCC-CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-- 316 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-- 316 (352)
+-..++.++.+.+.+.|.+. |.+++... ....+++++.... .+...+ +.+++..+|.+.-.+.++
T Consensus 321 ~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHlvLvDLr~~G----------~dGarv-E~vle~~~I~~NKNtvpGD~ 388 (477)
T KOG2467|consen 321 EYQKQVLKNAKALASALISR-GYKLVTGGTDNHLVLVDLRPKG----------VDGARV-EKVLELCHIALNKNTVPGDK 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CceEecCCccceEEEEeccccC----------CchHHH-HHHHHHhhhhhcCCcCCCCc
Confidence 77788888999999999988 88887543 4445666765431 144444 333444456654444343
Q ss_pred ---CCCeEEEEeec------CHHHHHHHHHHHHHHHh
Q 018665 317 ---DDTCIRISYAA------SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 317 ---~~~~iRi~~~~------~~~~l~~~~~~l~~~~~ 344 (352)
.|+.+||..+. -++|+++..+.|.++++
T Consensus 389 Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 389 SALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred cccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 36889997654 56888888888877764
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-10 Score=98.68 Aligned_cols=292 Identities=13% Similarity=0.138 Sum_probs=195.1
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh---cCCCCEEEecCCCCCChHHHHHh----
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYPEMARI---- 79 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~~~~~~vl~~~~~~~~~~~~~~~---- 79 (352)
.-....|+.+-.|...++++.+ ++-.|--+-.++|.+=+.+..+. .++..+++++..+|+.+...++.
T Consensus 113 EISQGrLqaLfefQtlv~dLTG-----m~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~ 187 (450)
T COG0403 113 EISQGRLEALFEFQTLVADLTG-----LDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEG 187 (450)
T ss_pred hhhhHHHHHHHHHHHHHHHHhC-----CCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhccc
Confidence 3344567777889999999997 66666667777887777666664 22357999999999999988774
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG-~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
.|.+++.++.+ |.+.|+++...++..+++..|+. .| ...+ ++++.+.++++ +.++++=.-
T Consensus 188 ~g~~i~~~~~~-------d~~~l~~~~~~~~~gv~vQyP~~-~G~~~~d---~~~l~~~~h~~-~al~~v~aD------- 248 (450)
T COG0403 188 LGIEIEVVDAD-------DLDDLESADDGDVFGVLVQYPNT-FGIVEED---LRALIEAAHSA-GALVIVAAD------- 248 (450)
T ss_pred CceEEEEeccc-------hhhhhhhccccCeEEEEEecCCC-CCccchh---HHHHHHHHhhc-CCEEEEEec-------
Confidence 46777777653 77888888334788899888885 45 4444 99999999999 988874321
Q ss_pred CCCccccccCCCCCCceEEEeccccc---cccccceeEEEEcChhHHHHH----------------------------Hh
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKA---FAMTGWRLGYIAGPKHFVAAC----------------------------NK 207 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~---~g~~g~~~g~l~~~~~~~~~~----------------------------~~ 207 (352)
-....+...++.++-+|++++.... +|.+|..+||..+.+++.+++ ++
T Consensus 249 -plaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRR 327 (450)
T COG0403 249 -PLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRR 327 (450)
T ss_pred -hhHhhccCCccccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhh
Confidence 1113344455567777999986443 465678899998888876663 22
Q ss_pred hhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccC-CceecCCCCceE--EEeecCCccCCc
Q 018665 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE-GVKMSEPQGAFY--LFIDFSTYYGSE 284 (352)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-g~~~~~~~~g~~--~~~~~~~~~~~~ 284 (352)
....++.+++.... +.++++-..+.+...+.++..+..+...++.+.|++.. |+.+... .+| +.+++++.
T Consensus 328 eKATSNICTnQaLl-A~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~~---- 400 (450)
T COG0403 328 EKATSNICTNQALL-ALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPEE---- 400 (450)
T ss_pred hccchhhhHHHHHH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecchh----
Confidence 22233344444333 33333332233588899999999999999999999662 4666543 443 34455431
Q ss_pred ccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 285 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
....+.++... .|+-+..- .+..+-+++.- +.++++.+++.+....
T Consensus 401 --------~~~~l~~~~~~-~G~~L~~~----~~~~~~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 401 --------VAEALLAAAIA-GGINLRRV----DADTVLIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred --------HHHHHHHHHHh-cCCceeee----cCCceEEEeecccCHHHHHHHHHHHhhhc
Confidence 34455555443 36665432 24466666665 6799999999887653
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-10 Score=104.61 Aligned_cols=242 Identities=14% Similarity=0.062 Sum_probs=150.4
Q ss_pred CCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCC------------------------
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPG------------------------ 60 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~------------------------ 60 (352)
..++...++ +.+.+++. ..|.+- .. =.+|+|||.|+..+++......
T Consensus 117 ~SP~~t~lE------~~vi~~la~l~G~~~-~~-G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n 188 (608)
T TIGR03811 117 SSPATSQME------EEVGKEFATLMGYKN-GW-GHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLN 188 (608)
T ss_pred cCchHHHHH------HHHHHHHHHHhCCCC-CC-eEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcc
Confidence 455566666 77777776 556542 23 3478999999987776542100
Q ss_pred ----------------------------------CEEEecCCCCCChHHHHHhcCC---eEEEecccCCCCcccCHHHHH
Q 018665 61 ----------------------------------DEVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLE 103 (352)
Q Consensus 61 ----------------------------------~~vl~~~~~~~~~~~~~~~~g~---~v~~i~~~~~~~~~~d~~~l~ 103 (352)
.+++++...|.++..++...|+ +++.||++ .++.+|++.|+
T Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD--~~~rmd~~~L~ 266 (608)
T TIGR03811 189 MPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVD--SNYRMDINELE 266 (608)
T ss_pred cccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecC--CCCcCCHHHHH
Confidence 1588888889999999999999 58899987 45679999999
Q ss_pred hhccC----C--eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE--EEEecccccccc---cCC-CC-ccccc----
Q 018665 104 SKLTE----K--SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL--LVLSDEIYEHII---YAP-AT-HTSFA---- 166 (352)
Q Consensus 104 ~~l~~----~--~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~--~livD~~~~~~~---~~~-~~-~~~~~---- 166 (352)
+.+++ + +.+||.+..+..+|.+-|.+++.+|++.++++ |+ ++.||.||+++. +.. .. ..++.
T Consensus 267 ~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~-gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~ 345 (608)
T TIGR03811 267 KIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKE-GIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQE 345 (608)
T ss_pred HHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHc-CCceeEeeeccccchhhhhhccccccccccchhhc
Confidence 98853 2 33455555678999999944444444444788 87 699999999853 111 00 00000
Q ss_pred ---------------------cCCCCCCceEEEeccccccccccceeEEEEcChh-HHHHHHhhhh--------------
Q 018665 167 ---------------------SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQS-------------- 210 (352)
Q Consensus 167 ---------------------~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~~~~~~~~~-------------- 210 (352)
.+.....-+-+..++||.+. ....+|.++.++. +.+.+.....
T Consensus 346 ~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g 424 (608)
T TIGR03811 346 VHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLG 424 (608)
T ss_pred ccccccccccccccccHhHHHHHhcCcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHHhcCcchhccccccCccccc
Confidence 00111223356778999986 5678888776544 3333321110
Q ss_pred ccccCCChHH--HHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc
Q 018665 211 QFTSGASSIS--QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 259 (352)
Q Consensus 211 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 259 (352)
.++...+.++ ...+..++..-....+.+.++.++.-+.++++.+.|++.
T Consensus 425 ~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 425 AYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred ccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0111223223 223333333211146788888898888999999998873
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-09 Score=94.02 Aligned_cols=266 Identities=15% Similarity=0.100 Sum_probs=167.4
Q ss_pred CEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 018665 61 DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 140 (352)
Q Consensus 61 ~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~ 140 (352)
+.+|+|+..|...-..+...|++|+.|+.++++ .+|+|.|++++.+++.++.+++|+.- |.. .+.+++|+++.++
T Consensus 158 ~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G--~VDlddLk~k~~~~~AalMiTnPsT~-GvF--E~~I~ei~~ivH~ 232 (496)
T COG1003 158 NICLIPDSAHGTNPASAAMAGFKVVVVKCDENG--NVDLDDLRAKAEDNLAALMITNPSTL-GVF--EEDIREICEIVHE 232 (496)
T ss_pred cEEEeeccccCCChhhHhhcCceEEEEecCCCC--CccHHHHHHHhccceeEEEeccCccc-ccc--hhhHHHHHHHHHH
Confidence 689999999998889999999999999998544 49999999999999999999999853 333 4559999999999
Q ss_pred CCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccc----cccceeEEEEcChhHHHHHHhh--------
Q 018665 141 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNKI-------- 208 (352)
Q Consensus 141 ~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g----~~g~~~g~l~~~~~~~~~~~~~-------- 208 (352)
+ |..+..|.+...-.. | ... +++.+-+++=..++|.|+ .+|.+.|=|.....+...+..-
T Consensus 233 ~-Gg~vY~DGANlNA~v-G-----~~r-PGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~ 304 (496)
T COG1003 233 A-GGQVYYDGANLNAIV-G-----LAR-PGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGE 304 (496)
T ss_pred c-CCEEEecCcchhhhh-c-----ccc-ccccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCcc
Confidence 9 999999988654211 1 111 122344466667888873 3456677666555444433220
Q ss_pred -----------hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC-CceEEEee
Q 018665 209 -----------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFID 276 (352)
Q Consensus 209 -----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~g~~~~~~ 276 (352)
.....+-.|......+...+.. ++.+.++..-+.---+..++..+|+..-.+.+.... ...=+.++
T Consensus 305 y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~--mG~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~HE~ild 382 (496)
T COG1003 305 YRLDYDGKKSIGVSAAPYGSASILPIAWAYIRM--MGADGLKQASEVAVLNANYIARRLKGYYPVPYTGENRVAHECILD 382 (496)
T ss_pred ccccCCCCccceeeccccCcchHHHHHHHHHHH--HhHHHHHHHHHHHHHhHHHHHHHhhhcCccccCCCCcceeEEEee
Confidence 0001111222233333333332 246667776666666788999999863122221111 11112222
Q ss_pred cCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-CCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 277 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-DDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.... .+..| .++.+++++|++ +|+.-..-++.- -.+.+=|=+.- +.+++|++++++.++.++...
T Consensus 383 ~r~l--~~~~G----v~~~DvAKrLlD-~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~ 450 (496)
T COG1003 383 ARPL--KKETG----VRALDVAKRLLD-YGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADA 450 (496)
T ss_pred chHh--HhhcC----CcHHHHHHHHHh-cCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2210 00111 278999999996 587643322110 24566665555 669999999999998887654
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-10 Score=97.22 Aligned_cols=181 Identities=19% Similarity=0.161 Sum_probs=139.0
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEE-----ecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCC
Q 018665 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVI-----IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 109 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl-----~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~ 109 (352)
..+.+.++++.+.|+..+..++..++..|+ ++ +.+++..+.++..|++++.+... .......++.++.++
T Consensus 82 ~aea~~ivnnn~aAVll~~~al~~~~EvVis~g~lV~-gg~~~v~d~~~~aG~~l~EvG~t----n~t~~~d~~~AIne~ 156 (395)
T COG1921 82 GAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVE-GGAFRVPDIIRLAGAKLVEVGTT----NRTHLKDYELAINEN 156 (395)
T ss_pred chhheeeECCcHHHHHHHHhhhccCCeEEEEcccccc-CCCCChhHHHHHcCCEEEEeccc----CcCCHHHHHHHhccC
Confidence 468899999999999999999987554443 44 68888999999999999888643 336789999999999
Q ss_pred eeEEEEcCCCCC-cccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccc
Q 018665 110 SRLLILCSPSNP-TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 188 (352)
Q Consensus 110 ~~~i~i~~p~np-tG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 188 (352)
+++++-.+-+|- .-...+ .++++++|+++ |+++++|.+.+...... +.+..... .+-++++.|-.|.+|
T Consensus 157 ta~llkV~s~~~~f~~~l~---~~~l~~ia~~~-~lpvivD~aSg~~v~~e---~~l~~~la-~GaDLV~~SgdKllg-- 226 (395)
T COG1921 157 TALLLKVHSSNYGFTGMLS---EEELVEIAHEK-GLPVIVDLASGALVDKE---PDLREALA-LGADLVSFSGDKLLG-- 226 (395)
T ss_pred CeeEEEEeecccccccccc---HHHHHHHHHHc-CCCEEEecCCccccccc---cchhHHHh-cCCCEEEEecchhcC--
Confidence 988775555442 222345 88899999999 99999999876543211 22222211 245599999999994
Q ss_pred cceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcc
Q 018665 189 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 189 g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
|.+.|.+++.+++++++++..............+++.++++.
T Consensus 227 GPqaGii~GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~ 268 (395)
T COG1921 227 GPQAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEAALEL 268 (395)
T ss_pred CCccceEechHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHH
Confidence 667999999999999999887777777888888888888876
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-08 Score=99.77 Aligned_cols=279 Identities=11% Similarity=0.092 Sum_probs=182.1
Q ss_pred CChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh---cCCCCEEEecCCCCCChHHHHH----hcC
Q 018665 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYPEMAR----IAD 81 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~~~~~~vl~~~~~~~~~~~~~~----~~g 81 (352)
....|+.++.|...++++.+ ++-.|--+-.++|.+-+.+.++. .++..+++++...|+.+...++ ..|
T Consensus 119 sQG~Lqal~e~Qtmi~~LtG-----m~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g 193 (954)
T PRK12566 119 AQGRLEALLNFQQMTIDLTG-----LDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFG 193 (954)
T ss_pred hhHHHHHHHHHHHHHHHHhC-----chhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCC
Confidence 55578888999999999997 55555555556665555444333 2234689999999998887665 456
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
++++. +.+++.+++++..+++.+|+. .|.+.+ +++|.+++++. |.++| +.+.- +.
T Consensus 194 ~~i~~-------------~~~~~~~~~~~~~v~vq~P~~-~G~i~d---~~~i~~~~h~~-gal~~-~~~d~-la----- 248 (954)
T PRK12566 194 FELVV-------------DAVDNLAAHAVFGALLQYPDT-HGEIRD---LRPLIDQLHGQ-QALAC-VAADL-LS----- 248 (954)
T ss_pred cEEEE-------------cchhhcCCCCEEEEEEECCCC-ceEEcc---HHHHHHHHHHc-CCEEE-EEeCH-HH-----
Confidence 66653 223344555788888888875 577766 99999999999 98866 33311 11
Q ss_pred ccccccCCCCCCceEEEecc---ccccccccceeEEEEcChhHHHHHH----------------------------hhhh
Q 018665 162 HTSFASLPGMWERTLTVNGF---SKAFAMTGWRLGYIAGPKHFVAACN----------------------------KIQS 210 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~---sK~~g~~g~~~g~l~~~~~~~~~~~----------------------------~~~~ 210 (352)
..+...+++++-+|++++. +=-+|.+|...|++.+.+++.+.+. +...
T Consensus 249 -L~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKA 327 (954)
T PRK12566 249 -LLVLTPPGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKA 327 (954)
T ss_pred -HhCCCChhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccc
Confidence 1223334556667888743 4445656778999999888777641 2222
Q ss_pred ccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE--EEeecCCccCCcccCC
Q 018665 211 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGF 288 (352)
Q Consensus 211 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~ 288 (352)
.++.+++....+.++.+... ..+.+.++++..++..+..++.+.|.+. |+++... .|| +.+++..
T Consensus 328 tSNICT~qaL~A~~a~~Y~~-~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~-g~~~~~~--~fF~~~~v~~~~--------- 394 (954)
T PRK12566 328 NSNICTAQVLLANIAGFYAV-YHGPEGLKRIAQRVHRLTAILAAGLEAK-GIKRLNR--HFFDTLTLEVGG--------- 394 (954)
T ss_pred cchhhHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHHHhc-CCccccC--CccceEEEEccC---------
Confidence 33334444433333333322 2247889999999999999999999984 8887643 444 3334421
Q ss_pred CCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHH
Q 018665 289 GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 340 (352)
Q Consensus 289 ~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~ 340 (352)
.+.++.+...++ ||-++-- .++.+.||+.. +.+|++.++..+.
T Consensus 395 ----~~~~~~~~a~~~-~~n~r~~----~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 395 ----AQAAIIESAEAA-RINLRIL----GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred ----CHHHHHHHHHHC-CCeeEEe----CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 456676666654 7766542 35678888876 7899999999884
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-08 Score=85.66 Aligned_cols=289 Identities=18% Similarity=0.164 Sum_probs=163.6
Q ss_pred CCcEEEeCChHH-HHHHHHHHhc--CCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCC-cccCHHHHHhhcc---C
Q 018665 36 PDQILVSNGAKQ-SILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN-FLLDPKVLESKLT---E 108 (352)
Q Consensus 36 ~~~i~~~~g~~~-a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~-~~~d~~~l~~~l~---~ 108 (352)
....++++-+|. ++...+.++. .+++.|+.+.-.+.+-..+....|.+++.+|...+++ ...|.+.+++.++ +
T Consensus 74 ~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~ 153 (389)
T PF05889_consen 74 VKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEELGA 153 (389)
T ss_dssp HCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCG
T ss_pred ccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHhCC
Confidence 356777777766 4455555553 4568899999888888889999999999999653333 3456777777774 3
Q ss_pred CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc--CCCCccccccCCCCCCceEEEeccccccc
Q 018665 109 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFA 186 (352)
Q Consensus 109 ~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 186 (352)
++.+.++++++.-.+...+ ++++|+++|++| |++.++..||+-=.. -....... .. .-..+++-|..|.|
T Consensus 154 ~~iLcvltttscfapr~~D--~i~~IakiC~~~-~IPhlvNnAYgvQ~~~~~~~i~~a~-~~---GRvda~vqS~dkNF- 225 (389)
T PF05889_consen 154 DNILCVLTTTSCFAPRLPD--DIEEIAKICKEY-DIPHLVNNAYGVQSSKCMHLIQQAW-RV---GRVDAFVQSTDKNF- 225 (389)
T ss_dssp GGEEEEEEESSTTTTB------HHHHHHHHHHH-T--EEEEGTTTTT-HHHHHHHHHHH-HH---STCSEEEEEHHHHH-
T ss_pred CCeEEEEEecCccCCCCCc--cHHHHHHHHHHc-CCceEEccchhhhHHHHHHHHHHHH-hc---CCcceeeeecCCCE-
Confidence 6677788887655555543 599999999999 999999999874000 00000000 00 01227788999998
Q ss_pred cccceeEEEE-cChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc---CCc
Q 018665 187 MTGWRLGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGV 262 (352)
Q Consensus 187 ~~g~~~g~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g~ 262 (352)
+-+.+.+.+. .++..+..+........ ..++........+.. +...........++...++.++|++. -+-
T Consensus 226 ~VPvGgai~As~~~~~i~~vs~~YpGRa--s~sp~ld~~itLl~L---G~~g~~~ll~~r~~~f~~l~erl~~~aee~~e 300 (389)
T PF05889_consen 226 MVPVGGAIMASFDPSGILAVSKEYPGRA--SASPSLDLFITLLSL---GCTGYGALLKERKASFPYLKERLKKWAEEVGE 300 (389)
T ss_dssp CEESSHEEEEESSHHHHHHHHHTSHSHB--TSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred EecCCCcEEEecCHHHHHHHHHHhhhhh--hcccchHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2444445554 35567777654322111 233334445555544 23445555555555666666665542 133
Q ss_pred eec-CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE----eccCCCC-------CCCCeEEEEeec--C
Q 018665 263 KMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA----LVPGDAF-------GDDTCIRISYAA--S 328 (352)
Q Consensus 263 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~----i~~g~~~-------~~~~~iRi~~~~--~ 328 (352)
.+. .|.....+.+.++....... .+...+...|.++ ||. +.++... ++..|+-++.+. +
T Consensus 301 ~ll~~p~N~is~a~tl~~l~~~~~------k~~~~lgs~Lf~R-~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~ 373 (389)
T PF05889_consen 301 RLLETPRNHISMAFTLDTLYEISQ------KDGTFLGSMLFKR-GVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMT 373 (389)
T ss_dssp EBSSSTT-SSEEEEE-TTCCTCCS------SHHHHHHHHHHHT-TEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--
T ss_pred hhcCCCCCCeeEEEECccchhhcc------chhhhHHHHHHhC-CcccceeeccCCCcccccCCCCchHHHHHHHHhCCC
Confidence 333 23444445555554321000 1456888888877 554 2222111 123688886555 9
Q ss_pred HHHHHHHHHHHHHHHh
Q 018665 329 LTTLQAAVERIKKGLL 344 (352)
Q Consensus 329 ~~~l~~~~~~l~~~~~ 344 (352)
+||++.++++|+++++
T Consensus 374 ~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 374 REEVDYFVKRLDKIIK 389 (389)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-07 Score=82.50 Aligned_cols=304 Identities=16% Similarity=0.172 Sum_probs=172.8
Q ss_pred hcCCCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-----CEEEec-CCCCCChHHHHHhcC---CeEEEecccCC
Q 018665 29 ENGLSYTPDQILVSNGAKQSILQAVLAVCS-------PG-----DEVIIP-APFWVSYPEMARIAD---ATPVILPTRIS 92 (352)
Q Consensus 29 ~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~~-----~~vl~~-~~~~~~~~~~~~~~g---~~v~~i~~~~~ 92 (352)
-.||+...+.|+--.|+.+.+..+.-+-.+ .| +-|+.. .-+|.+...++...| -+++.|+.+
T Consensus 153 ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~-- 230 (510)
T KOG0629|consen 153 IVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTD-- 230 (510)
T ss_pred HhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCceeEEeccc--
Confidence 557766656776655555555443333211 11 334433 468889999999998 577777776
Q ss_pred CCcccCHHHHHhhccC---C---eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccc
Q 018665 93 ENFLLDPKVLESKLTE---K---SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 93 ~~~~~d~~~l~~~l~~---~---~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
.....++++|++.+.. + |-.+..+.-+..-|..-| +..++++|++| ++++.||.++++...-...+..
T Consensus 231 e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd---L~~iadiC~k~-~lWmHvDAAwGGglLmS~k~R~-- 304 (510)
T KOG0629|consen 231 ERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD---LNGIADICEKH-KLWMHVDAAWGGGLLMSRKHRH-- 304 (510)
T ss_pred ccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc---HHHHHHHHHhc-CEEEEeecccccccccChhhHh--
Confidence 4456999999998842 2 233333333567777778 99999999999 9999999999873332222221
Q ss_pred cCCCCCCceEEEeccccccccccceeEEEEcChh-HHHHHHhhhhccc-----------cCCChHHHHH-------HHHH
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQSQFT-----------SGASSISQKA-------GVAA 227 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~-------~~~~ 227 (352)
.+.....-.-+.++.+|..| +.+.++..+.+.+ ++.+..+....+- -+..-..|-. ...+
T Consensus 305 kl~Giera~SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlm 383 (510)
T KOG0629|consen 305 KLTGIERANSVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLM 383 (510)
T ss_pred hccCccccCceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHH
Confidence 11111112256788999998 7788887766553 4444432221110 0111111111 1112
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceec-C--CCCceEEEeecCCccC---CcccCCCCC-CChHHHHHH
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-E--PQGAFYLFIDFSTYYG---SEAEGFGKI-ENSESLCRY 300 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~--~~~g~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~ 300 (352)
+.. .+...++...+++-++.+++.+++++.++...+ . |+...+.+-..|.... ..++.+..- .-+..+-.+
T Consensus 384 wka--KG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~ 461 (510)
T KOG0629|consen 384 WKA--KGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKER 461 (510)
T ss_pred HHh--cccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHH
Confidence 221 124667888899999999999999998775444 2 4423322222222111 111111100 013345566
Q ss_pred HHHccCEEeccCCCCC-CCCeEEEEeec---CHHHHHHHHHHHHHHHh
Q 018665 301 LLDKAQVALVPGDAFG-DDTCIRISYAA---SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 301 l~~~~gi~i~~g~~~~-~~~~iRi~~~~---~~~~l~~~~~~l~~~~~ 344 (352)
+.++ |.....-...+ .++.+|+.+.. +++|++-+++.|...-+
T Consensus 462 Mm~~-Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq 508 (510)
T KOG0629|consen 462 MMKK-GTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQ 508 (510)
T ss_pred HHhc-cceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhcc
Confidence 6655 43322211111 25688987765 77899999988877654
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.8e-10 Score=96.07 Aligned_cols=215 Identities=20% Similarity=0.186 Sum_probs=60.8
Q ss_pred CCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCC------CCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccC
Q 018665 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP------FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 108 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~------~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~ 108 (352)
..+.-+++++..+|+..++.+++. +.+|++... .-+..-+..+..|.+++.+-.- ....++++++++.+
T Consensus 61 gAeaA~VvNnnaAAv~L~l~~la~-~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt----N~t~~~Dye~AI~e 135 (367)
T PF03841_consen 61 GAEAALVVNNNAAAVLLALNTLAK-GKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT----NRTHLSDYEKAITE 135 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc----cccccccccccccc
Confidence 466778888888999988888865 446665543 2223556788899998887643 33578899999999
Q ss_pred CeeEEEEcCCCCC--cccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc----CCCCccccccCCCCCCceEEEeccc
Q 018665 109 KSRLLILCSPSNP--TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY----APATHTSFASLPGMWERTLTVNGFS 182 (352)
Q Consensus 109 ~~~~i~i~~p~np--tG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~s~s 182 (352)
++.+++-.+++|- .|..-.. .++++++++++| |+++|+|...+.+.. .-...+++..... .+-+++++|-.
T Consensus 136 ~Ta~ll~Vh~Sn~~i~GFt~~~-~~~el~~la~~~-~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~-~GaDlV~fSGd 212 (367)
T PF03841_consen 136 NTAALLKVHTSNFRIQGFTGEV-SLEELAELAKEH-GLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA-AGADLVTFSGD 212 (367)
T ss_dssp --------------------------HHHHHHHHH-T--EEEE-TTHHHHHHHTT----------CCC-CT-SEEEEETT
T ss_pred cccccccccccccccccccccc-cHHHHHHHHhhc-CCcEEEECCCCCCcCcccccCccccHHHHHhh-cCCCEEEEECC
Confidence 9999988887663 3333211 299999999999 999999988743211 0011233333322 35669999999
Q ss_pred cccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCCh---------HHHHHHHHHHHHHHHHHH
Q 018665 183 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG---------EVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 183 K~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~l~ 253 (352)
|.+| |...|.+++.+++++++++..............+++.+++......+ ..+....+.++++.+.+.
T Consensus 213 KlLG--GPQaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~ 290 (367)
T PF03841_consen 213 KLLG--GPQAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLA 290 (367)
T ss_dssp SSSS--S-S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH--------------------------------
T ss_pred CcCC--CCCeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccc
Confidence 9996 45689999999999999887666667788888888888887633111 113333445566666666
Q ss_pred HHhccc
Q 018665 254 KSFGEL 259 (352)
Q Consensus 254 ~~l~~~ 259 (352)
..|+..
T Consensus 291 ~~l~~~ 296 (367)
T PF03841_consen 291 AQLKAA 296 (367)
T ss_dssp ------
T ss_pred cccccc
Confidence 666654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-08 Score=83.55 Aligned_cols=215 Identities=16% Similarity=0.101 Sum_probs=125.3
Q ss_pred CHHHHHhhcc-----CCee-EEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc-ccccCC
Q 018665 98 DPKVLESKLT-----EKSR-LLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLP 169 (352)
Q Consensus 98 d~~~l~~~l~-----~~~~-~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~-~~~~~~ 169 (352)
.++++++.+. +.+. ++|+..-++..|- ..++++.+.|.+++++| ++.+|+||++.+.+.+|+.+. ..+.+.
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh-~v~fivDEVQTGgGaTGk~WaHehw~l~ 332 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH-GVAFIVDEVQTGGGATGKFWAHEHWNLD 332 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhc-CeEEEeeeeecCCCccCceeeehhcCCC
Confidence 3666777663 2344 4555555777774 46889999999999999 999999999998777665321 111122
Q ss_pred CCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Q 018665 170 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 249 (352)
Q Consensus 170 ~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (352)
. + .-+.+|||-+- .| || ..+++++.. +.++.+.++...+.-...+...++. ..-+.+.+..+..-
T Consensus 333 ~--P--pD~vTFSKK~q-~g---Gf-fh~~~frpn-~pYrifNTWmGdP~k~lll~~vv~~-----I~~~~Ll~n~~~vG 397 (484)
T KOG1405|consen 333 S--P--PDVVTFSKKFQ-TG---GF-FHDEEFRPN-EPYRIFNTWMGDPSKNLLLEEVVQE-----IKREDLLNNVAHVG 397 (484)
T ss_pred C--C--ccceehhhhhh-cC---cc-ccCcccCCC-chHHHhhhhcCChHHHHHHHHHHHH-----HhHHHHHHHHHHHH
Confidence 1 1 23667888884 33 44 344444332 1222233344444444444455443 12233344444444
Q ss_pred HHHHHHhcc----cCC-ceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEE
Q 018665 250 DFLVKSFGE----LEG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324 (352)
Q Consensus 250 ~~l~~~l~~----~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~ 324 (352)
+.+...|.+ .|+ +.-+.. .|.|+..++|... --+.+...+. .+|+-+. +|+ ...+|+-
T Consensus 398 ~~l~~gL~~Lq~~~p~~~~~~RG-rGTF~a~d~ps~~-----------~Rdk~i~~~~-~nGv~~G---GCg-~~siRfR 460 (484)
T KOG1405|consen 398 KALLKGLLELQAKYPGKINNLRG-RGTFIAWDCPSGS-----------IRDKLILIAR-LNGVNLG---GCG-DKSIRFR 460 (484)
T ss_pred HHHHHHHHHHHHhCchhhhcccc-cceEEEEeCCChH-----------HHHHHHHHHH-HcCceec---ccc-cceeeec
Confidence 555555443 344 333344 5666778888752 3455665555 4588763 233 4455655
Q ss_pred eec--CHHHHHHHHHHHHHHHhh
Q 018665 325 YAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 325 ~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
++. .+...+-+++++.+.+..
T Consensus 461 PsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 461 PSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred cceeehhhhHHHHHHHHHHHhcc
Confidence 544 778889999999988764
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-07 Score=76.22 Aligned_cols=171 Identities=15% Similarity=0.229 Sum_probs=119.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecC-CCCCChH----------HHHHhcCCeEEEecc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYP----------EMARIADATPVILPT 89 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~-~~~~~~~----------~~~~~~g~~v~~i~~ 89 (352)
+..|+-++ .+...-...+. |+|+|+..++..++++||+++.-. .-|..+. ..++.+|+....+|+
T Consensus 72 ~vyA~vf~---aE~a~VRpq~i-sGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~L 147 (416)
T COG4100 72 RVYAQVFG---AEAALVRPQII-SGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPL 147 (416)
T ss_pred HHHHHHhc---cccceeeeeee-cchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeeccc
Confidence 77777775 11111233333 567999999999999999987443 3343332 456788899999998
Q ss_pred cCCCCcccCHHHHHhhccCCeeEEEEcCC-CCCcccCCCHHHHHHHHHHHHh-CCCEEEEecccccccccCCCCcccccc
Q 018665 90 RISENFLLDPKVLESKLTEKSRLLILCSP-SNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSFAS 167 (352)
Q Consensus 90 ~~~~~~~~d~~~l~~~l~~~~~~i~i~~p-~nptG~~~~~~~l~~l~~~~~~-~~~~~livD~~~~~~~~~~~~~~~~~~ 167 (352)
.. +..+|.+.+.+.+++++++|-+--. .+..--.++.+++++++++.+. +||++++||++|++|.- ...+.-
T Consensus 148 t~--~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE--~~EPt~-- 221 (416)
T COG4100 148 TA--DGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVE--EKEPTH-- 221 (416)
T ss_pred cc--CCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhh--ccCccc--
Confidence 74 4459999999999999998876433 2211123677789999998875 47999999999998752 221221
Q ss_pred CCCCCCceEEEeccccccccccc--eeEEEEcChhHHHHHH
Q 018665 168 LPGMWERTLTVNGFSKAFAMTGW--RLGYIAGPKHFVAACN 206 (352)
Q Consensus 168 ~~~~~~~~i~~~s~sK~~g~~g~--~~g~l~~~~~~~~~~~ 206 (352)
-+-++..+|+-|..| +|+ -.||+.+..++++...
T Consensus 222 ----vGaDliAGSLIKNpG-GgiaktGGYiaGk~~~ve~~~ 257 (416)
T COG4100 222 ----VGADLIAGSLIKNPG-GGIAKTGGYIAGKAELVEAAA 257 (416)
T ss_pred ----cchhhhccceeeCCC-CceeeccceeechHHHHHhhc
Confidence 234478899999987 554 3688999999998753
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.6e-09 Score=81.07 Aligned_cols=65 Identities=20% Similarity=0.504 Sum_probs=59.8
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcC--CCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS 72 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~--~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~ 72 (352)
..|.+..|..++| +++|+++. ++| +.+++++|++|+|+++++..++.+++++||.|++++|+|..
T Consensus 86 a~Y~~~~G~~~lR------~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 86 ALFQDYHGLANFR------KAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred hcCCCCCCcHHHH------HHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 3588899999999 99999998 777 66789999999999999999999999999999999999963
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.1e-06 Score=72.74 Aligned_cols=286 Identities=10% Similarity=0.098 Sum_probs=162.8
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH-HHHHhcCCeEEEeccc-CCCCcc--
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP-EMARIADATPVILPTR-ISENFL-- 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~-~~~~~~g~~v~~i~~~-~~~~~~-- 96 (352)
+.+.+.+ +++-+-+=+++..|+|..+..+.+.|+.+...-.+....|.... .-++..+..+...... ...++.
T Consensus 57 ~~lreLl---~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~i 133 (365)
T COG1932 57 KDLRELL---NIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSI 133 (365)
T ss_pred HHHHHHh---CCCCCceEEEEcCccHHHHHHHHHhhhcccCceeEeeeehhHhHHHHHHHhcccccccccceeccCccCC
Confidence 4444444 33322233456677888888888888765433123333333322 2334444322222221 122222
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
.+++++. +.++...|.+|.-..-+|.-.+. ...+ . ++.++++|.+...++. +..+.. -.+
T Consensus 134 P~~~~~~--~~~~~ayv~~~~NeTi~Gv~v~~--~p~~-----~-~~~~~v~D~SS~ilsr----~iDvsk------~dv 193 (365)
T COG1932 134 PDLSKWD--FSDNDAYVHFCWNETISGVEVPE--LPDI-----G-SDGLLVADASSAILSR----PIDVSK------YDV 193 (365)
T ss_pred CChhhcc--cCCCccEEEEecCCcccceEccC--CCCC-----C-CCceEEEecccHHhcC----CCChhH------cce
Confidence 3444333 33344446666555667777651 1111 1 1477888987655431 222222 227
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHhhh-------------hccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
+..+..|.+|..| ++.++.+++++++++... ....-+|+.+..+.....++=.. ....++.+.+
T Consensus 194 iyagaQKnlGpaG--ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk-~~GGl~~~~~ 270 (365)
T COG1932 194 IYAGAQKNLGPAG--LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLK-SQGGLEALEA 270 (365)
T ss_pred EEEehhhccCccc--eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 7888999998667 899999999998876531 11112455555554444443110 1244677778
Q ss_pred HHHHHHHHHHHHhcccCCceec---CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCe
Q 018665 244 AFRERRDFLVKSFGELEGVKMS---EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 320 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~ 320 (352)
+-++..+.|.+.+.+.+..... ..++-+.+.+.+.+. +-...+.+.+.++ |+...-| ....+.
T Consensus 271 rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~-----------~ld~~fv~eae~~-gl~~lkG--hr~vgG 336 (365)
T COG1932 271 RNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDA-----------ELDKGFVAEAEAA-GLIYLKG--HRSVGG 336 (365)
T ss_pred HHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcH-----------HHHHHHHHHHHHc-CCceecc--ccCCCc
Confidence 8888888888888876222211 334455566666543 1356677777766 5655555 344566
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 321 IRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 321 iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+|+|+.. +-|+++.+++.++.+.++.
T Consensus 337 mRasiynA~~~e~veaL~~fm~~f~~~~ 364 (365)
T COG1932 337 LRASIYNAVPLEDVEALTDFMDWFEETY 364 (365)
T ss_pred eeeeeecCCCHHHHHHHHHHHHHHHHhh
Confidence 9999977 8899999999999988764
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-06 Score=71.35 Aligned_cols=281 Identities=12% Similarity=0.087 Sum_probs=169.7
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCC---CEEEecCCCCCChH----HHHHhcCCeE----EEecccCCCCcccCHHHH
Q 018665 34 YTPDQILVSNGAKQSILQAVLAVCSPG---DEVIIPAPFWVSYP----EMARIADATP----VILPTRISENFLLDPKVL 102 (352)
Q Consensus 34 ~~~~~i~~~~g~~~a~~~~~~~l~~~~---~~vl~~~~~~~~~~----~~~~~~g~~v----~~i~~~~~~~~~~d~~~l 102 (352)
...++|.+.++-|-.+..++.++.++. -+|+++.-.|++-. ..++..|..+ +.+...+ +.-.+..+.+
T Consensus 126 A~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePRE-GEetlRteDI 204 (465)
T KOG3846|consen 126 AQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPRE-GEETLRTEDI 204 (465)
T ss_pred CCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccc-cccchhHHHH
Confidence 567889999999999999999998765 46888887776644 4555566543 2232221 2222556666
Q ss_pred Hhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEe
Q 018665 103 ESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 179 (352)
Q Consensus 103 ~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (352)
.+.+. +..++|+.+..+.-||+.++ +.+|-..-+.. |+++=.|-+|.. |. .++ ...+|+.++-++
T Consensus 205 Ld~IEkngDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~k-gc~VGfDLAHAv----gN--VpL--~LHdWgVDFACW 272 (465)
T KOG3846|consen 205 LDTIEKNGDEIALVCFSGVQYYTGQYFD---IGAITFAGQFK-GCLVGFDLAHAV----GN--VPL--QLHDWGVDFACW 272 (465)
T ss_pred HHHHHhcCCeEEEEEeecceeecccccc---hhhhhhcccCC-CcEechhhhhhh----cC--Cce--EEeecCCceEEE
Confidence 66664 35566778889999999999 77777544455 999988888764 22 111 123478888999
Q ss_pred ccccccccccceeEEEEcChhHHHHH-Hhhhh------------------------ccccCCChHHHHHHHHHhcccCCC
Q 018665 180 GFSKAFAMTGWRLGYIAGPKHFVAAC-NKIQS------------------------QFTSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 180 s~sK~~g~~g~~~g~l~~~~~~~~~~-~~~~~------------------------~~~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
...|.++.+.-++|.+...+++.... .+... +....|+.....++...++. ..
T Consensus 273 CSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~--F~ 350 (465)
T KOG3846|consen 273 CSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLEL--FA 350 (465)
T ss_pred eeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHH--HH
Confidence 99999852323566666655433221 11111 11123344444444444432 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccc-----------CCceecCCC----CceEEEeecCCccCCcccCCCCCCChHHHHH
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGEL-----------EGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCR 299 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~~-----------~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (352)
.-.+.+++++.--...++...++.. +.+.++.|. .|..+.+.++. ....+.+
T Consensus 351 q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fss-------------p~~~vfq 417 (465)
T KOG3846|consen 351 QFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSS-------------PTPKVFQ 417 (465)
T ss_pred HhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCC-------------CchHHHH
Confidence 1123344443333333333333221 123344332 35555555543 5678889
Q ss_pred HHHHccCEEeccCCCCCCCCeEEEEeec---CHHHHHHHHHHHHHHHhhhC
Q 018665 300 YLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 300 ~l~~~~gi~i~~g~~~~~~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~~ 347 (352)
+|.++ |+..-. ..++.+|+.+.. +-.|+.+++..|.+++..+.
T Consensus 418 eL~kr-Gv~~Dk----R~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 418 ELHKR-GVIGDK----RRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred HHHHc-Ceeccc----cCCCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 99987 887543 358999999877 77999999999999987653
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.9e-06 Score=72.40 Aligned_cols=259 Identities=14% Similarity=0.078 Sum_probs=151.6
Q ss_pred EEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCee-----EEEEcCCCCCcccCCCHHHHHHHHHH
Q 018665 63 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR-----LLILCSPSNPTGSVYPKNLLDEIARI 137 (352)
Q Consensus 63 vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~-----~i~i~~p~nptG~~~~~~~l~~l~~~ 137 (352)
+...+-.|.+...++...+++.+.++.+. ++.++.+.|++++.++.. .+++.+. .|..+...+.+.+|..+
T Consensus 185 ~Y~SDqahssveka~~i~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIPf~v~at~--GTT~~ca~D~l~elg~V 260 (511)
T KOG0628|consen 185 AYCSDQAHSSVEKACLIAGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIPFFVCATL--GTTSSCAFDELEELGPV 260 (511)
T ss_pred EEecCcccchHHHhHhhcceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCccEEEEEee--cCccccccccHHHhcch
Confidence 44567788888899999999999999874 788999999999965321 2233332 22333445569999999
Q ss_pred HHhCCCEEEEecccccccccCCCCccccccCCC-CCCceEEEeccccccccccceeEEEE------------cChhHHHH
Q 018665 138 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIA------------GPKHFVAA 204 (352)
Q Consensus 138 ~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~g~~g~~~g~l~------------~~~~~~~~ 204 (352)
|+++ ++++.||++|.+..+. .+.+..+.. -..-.-+....||++- .-+.+..+. +++-.++.
T Consensus 261 c~~~-glWLHVDAAYAGsa~i---CpE~r~l~rGie~aDSfn~n~hK~~~-vnfDCs~lWvkd~~~~~~~~~vdp~yL~h 335 (511)
T KOG0628|consen 261 CREE-GLWLHVDAAYAGSAFI---CPEFRYLMRGIEYADSFNFNPHKWLL-VNFDCSPLWVKDGTKLSRAFNVDPLYLKH 335 (511)
T ss_pred hhhc-CEEEEeehhhcccccc---CHHHHHHhhcchhhccccCChhheeE-EeeeeecceeecCceeeeeeecChHhhcc
Confidence 9999 9999999999864321 122222110 0000112233444431 111112111 22222221
Q ss_pred HH--------hhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEee
Q 018665 205 CN--------KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 276 (352)
Q Consensus 205 ~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~ 276 (352)
-. .++-..+-..-++-.....+.+ +.+.+++..++.-+..+.+.+.+.+-+.+++..+..--.+.++
T Consensus 336 ~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~-----Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFR 410 (511)
T KOG0628|consen 336 AYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSY-----GVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFR 410 (511)
T ss_pred hhhccCCCccccccccccchhhHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEe
Confidence 11 0000000111111222222222 2455555555556666667777776667888765543335556
Q ss_pred cCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec---CHHHHHHHHHHHHHHHhhh
Q 018665 277 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~ 346 (352)
+.+.- +..+.+.+++.....|.+.|.+. ...-.+|++++. ++++++++.+.|.+....+
T Consensus 411 lk~~N----------~~ne~Ll~~in~~g~i~l~~~~l-~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l 472 (511)
T KOG0628|consen 411 LKGDN----------EINEALLNRLNSSGRIHLVPASL-HGKFVLRFAVCSPLTNESDIDEAWKIIFEAADEL 472 (511)
T ss_pred ecCCc----------HHHHHHHHHHHhcCcEEEEEeee-cceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Confidence 54421 15788999999888899988643 234478999987 7789999999999888764
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00014 Score=67.53 Aligned_cols=310 Identities=15% Similarity=0.147 Sum_probs=172.3
Q ss_pred hhccchhhHHHHHHHHhcCCCCCCCcEEEeCCh-HHH---HHHHHHHh-cCCC----CEEEecCCCCCChHHHHHhcCCe
Q 018665 13 MRVLWSFVQQFVINLKENGLSYTPDQILVSNGA-KQS---ILQAVLAV-CSPG----DEVIIPAPFWVSYPEMARIADAT 83 (352)
Q Consensus 13 l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~-~~a---~~~~~~~l-~~~~----~~vl~~~~~~~~~~~~~~~~g~~ 83 (352)
+.|.|.|.+.+.++-....-...-+.+-+.+++ .++ -..++++. ..+| ..-++|...|...-..++..|.+
T Consensus 574 ~eQaqGY~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Magmk 653 (1001)
T KOG2040|consen 574 VEQAQGYQQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMK 653 (1001)
T ss_pred hHHHhhHHHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCE
Confidence 334445555554443322212345666665332 222 22344443 3333 34678888998888899999999
Q ss_pred EEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 84 PVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|+.+..+..+ .+|..+|.+... ++-.++.+..|+.- |.. .+.+++++++.+++ |.-+..|.+...-
T Consensus 654 vvpV~~~~~G--~id~~dLk~kaekh~~~Laa~MvTYPST~-Gvf--E~~i~d~cd~iHeh-GGQVYlDGANMNA----- 722 (1001)
T KOG2040|consen 654 VVPVGCDANG--NIDMVDLKAKAEKHKDNLAALMVTYPSTH-GVF--EEGIDDICDIIHEH-GGQVYLDGANMNA----- 722 (1001)
T ss_pred EEEeeccCCC--CccHHHHHHHHHHhhhhhheeEEeccccc-ccc--cccHHHHHHHHHhc-CCEEEecCCCccc-----
Confidence 9999987444 489999988774 46678888888643 332 23399999999999 9999999886531
Q ss_pred CccccccCCCCCCceEEEecccccccc----ccceeEEEEcChhHHHHHHhhhhc-----------cccC----CChHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAM----TGWRLGYIAGPKHFVAACNKIQSQ-----------FTSG----ASSISQ 221 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~----~g~~~g~l~~~~~~~~~~~~~~~~-----------~~~~----~~~~~~ 221 (352)
...+.. +++.+.+++=..++|.|+. +|.++|=+.....+...+....-. .+.+ .|....
T Consensus 723 -qVGlc~-pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~IL 800 (1001)
T KOG2040|consen 723 -QVGLCR-PGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALIL 800 (1001)
T ss_pred -eecccC-CccccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceee
Confidence 111121 1224445666677888743 355566665544444433211100 0000 111111
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE---EEeecCCccCCcccCCCCCCChHHHH
Q 018665 222 KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY---LFIDFSTYYGSEAEGFGKIENSESLC 298 (352)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
....+.+.. ++...+...-+.---+..++.++|+..-.+-+.. ..|.. +.+++.+.. +..|. ++.+++
T Consensus 801 pISwaYikm--MG~~GL~~as~~AiLNaNYMakRLe~hYkil~~~-~~~~vaHEFIlD~r~fK--~~agi----eavDvA 871 (1001)
T KOG2040|consen 801 PISWAYIKM--MGSGGLKDASKIAILNANYMAKRLESHYKILFRG-ENGLVAHEFILDLRPFK--KTAGI----EAVDVA 871 (1001)
T ss_pred hhHHHHHHH--hcccccchhhHHHhhhhHHHHHHHhhccceeEec-CCcceeeeeeeechhhc--cccCC----cHHHHH
Confidence 122222221 1233343333333446678888888742333322 22221 223443321 11222 788999
Q ss_pred HHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 299 RYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 299 ~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
++|.+ +|+.-...++. -++++=|-+.. +.+|+|++++++-.+-++.
T Consensus 872 KRL~D-YgFHaPTmswP-V~gtLMIEPTESE~k~ElDRfcdAliSIreEI 919 (1001)
T KOG2040|consen 872 KRLMD-YGFHAPTMSWP-VAGTLMIEPTESEDKAELDRFCDALISIREEI 919 (1001)
T ss_pred HHHHh-ccCCCCccccc-cCCceEeccCccccHHHHHHHHHHHHHHHHHH
Confidence 99885 68765444332 45777776666 5589999998876555443
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00032 Score=65.32 Aligned_cols=279 Identities=11% Similarity=0.140 Sum_probs=159.5
Q ss_pred hhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHh----cCCeEE
Q 018665 11 LQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARI----ADATPV 85 (352)
Q Consensus 11 ~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~----~g~~v~ 85 (352)
..|.-+.-|...+++.-+ ++-.+--+-.-+|.|-+....+. ..++.+.++...+|+.....++. +|++++
T Consensus 160 GRLEsllNyQTmi~dlTG-----L~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~ 234 (1001)
T KOG2040|consen 160 GRLESLLNYQTMITDLTG-----LPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVV 234 (1001)
T ss_pred hhHHHHhhhHHhhhhccC-----CcccchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEE
Confidence 345545556777777765 44344333344444444443332 34556799999999999887764 344433
Q ss_pred EecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 86 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
.. |+.+.- ...++...+++-.|.. .|.+.+ ..++++.+++. +.++++-- ++ ....+
T Consensus 235 ~~----------~~~~~~-~s~~~v~gvlvQYP~t-~G~i~d---~~el~~~a~~~-~s~vv~at---DL-----LaLti 290 (1001)
T KOG2040|consen 235 VS----------DIKEAD-YSSKDVSGVLVQYPDT-EGSVLD---FDELVELAHAN-GSLVVMAT---DL-----LALTI 290 (1001)
T ss_pred ec----------CHHHhh-ccccceeEEEEEcCCC-CCcccC---HHHHHHHhhcc-CceEEEee---hh-----hHHHc
Confidence 32 222221 1223566666655543 578888 88888888888 87766321 10 11233
Q ss_pred ccCCCCCCceEEEeccccc---cccccceeEEEEcChhHHHHHH----------------------------hhhhcccc
Q 018665 166 ASLPGMWERTLTVNGFSKA---FAMTGWRLGYIAGPKHFVAACN----------------------------KIQSQFTS 214 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~---~g~~g~~~g~l~~~~~~~~~~~----------------------------~~~~~~~~ 214 (352)
...+++++-+|.++|.... +|.+|...||..+.+++.+.+. +-....+.
T Consensus 291 LrpPgefGaDIavGSsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNI 370 (1001)
T KOG2040|consen 291 LRPPGEFGADIAVGSSQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNI 370 (1001)
T ss_pred cCChhhcCceeeeccccccCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhh
Confidence 3445557777999986443 4545555666555555444321 11111111
Q ss_pred CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEE--eecCCccCCcccCCCCCC
Q 018665 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIE 292 (352)
Q Consensus 215 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~ 292 (352)
.+.....+-..+++.. .-+.+.++++.+++......+...|++. |-++... .||=. +++..
T Consensus 371 CTAQALLANmaAmyai-YHGp~gL~~IArrvh~~T~~l~~~l~~a-ghel~~k--~fFDTLkI~~~~------------- 433 (1001)
T KOG2040|consen 371 CTAQALLANMAAMYAI-YHGPHGLKEIARRVHNLTLILAEGLKNA-GHELQHK--PFFDTLKIRCGC------------- 433 (1001)
T ss_pred hHHHHHHHHHHHHHhh-hcCcHHHHHHHHHHHHHHHHHHHHHhhc-chhhccc--cccceEEEEecC-------------
Confidence 1111111111122221 1147889999999999999999999986 6555432 25533 34432
Q ss_pred ChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHH
Q 018665 293 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 340 (352)
Q Consensus 293 ~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~ 340 (352)
..+++.++..++ +|-++. ..++.+-+++.. +++|++.++..+.
T Consensus 434 s~~~~l~rA~~~-~iNlr~----~ed~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 434 SAEEVLDRAAKR-QINLRL----VEDGTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred cHHHHHHHHHhh-cCceEE----eecCceEEeecccccHHHHHHHHHHHc
Confidence 577777777765 444332 257888888876 7789999988775
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=53.99 Aligned_cols=158 Identities=17% Similarity=0.127 Sum_probs=83.2
Q ss_pred cCCCCCChHHHHHhcCCeEEEecccCCCC-cccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 018665 66 PAPFWVSYPEMARIADATPVILPTRISEN-FLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 143 (352)
Q Consensus 66 ~~~~~~~~~~~~~~~g~~v~~i~~~~~~~-~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~ 143 (352)
+.-.-.+.....-..|++++.++--.+++ ..-|++.+++.+.+ ....|.+.+.....=.+-+++.+++|+.+|..| +
T Consensus 109 ~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~-d 187 (432)
T KOG3843|consen 109 LRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAH-D 187 (432)
T ss_pred EecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHcc-C
Confidence 33333344455557788887776543332 33477777777753 344333333322222334566799999999999 9
Q ss_pred EEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEE--cChhHHHHHHhhhhccccCCChHHH
Q 018665 144 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA--GPKHFVAACNKIQSQFTSGASSISQ 221 (352)
Q Consensus 144 ~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~--~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
++-||..+|+--.- ...+...... .-...+.++.|+.|.|-.| . .|.++ .+..++..+.+...... .+++..
T Consensus 188 iphivnnayglqse-e~i~~iaa~~-~~grida~vqsldknf~vp-v-ggaiia~fk~n~iq~iak~ypgra--sa~ps~ 261 (432)
T KOG3843|consen 188 IPHIVNNAYGLQSE-ECIHKIAAAA-ECGRIDAFVQSLDKNFMVP-V-GGAIIAAFKDNFIQEIAKMYPGRA--SASPSL 261 (432)
T ss_pred chhhhccccccchH-HHHHHHHHHh-hhccHHHHHHHhhhcceee-c-chhHhhHhHHHHHHHHHHhCCCcc--ccCccH
Confidence 99999999874110 0000111100 0012235678888988433 1 13333 25566666655432222 233333
Q ss_pred HHHHHHhcc
Q 018665 222 KAGVAALGL 230 (352)
Q Consensus 222 ~~~~~~l~~ 230 (352)
..+...+..
T Consensus 262 dllitll~~ 270 (432)
T KOG3843|consen 262 DLLITLLSL 270 (432)
T ss_pred HHHHHHHHh
Confidence 444444444
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.083 Score=54.08 Aligned_cols=185 Identities=10% Similarity=0.136 Sum_probs=110.9
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHh------cCCCCEEEecCCCCCChHHH
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAV------CSPGDEVIIPAPFWVSYPEM 76 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l------~~~~~~vl~~~~~~~~~~~~ 76 (352)
|.++.|...+| ..||.|+. -+++++.+++|++.++-..|++.+++.+ ++.+ ++..-...|...
T Consensus 422 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 491 (1082)
T PLN02672 422 CEPPAGSKRFR------NLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEH----LTRWLPKKWLTS 491 (1082)
T ss_pred CCCCccchHHH------HHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhh----hhccCCHHHHhH
Confidence 67788999999 99999999 8899999999999999999998888764 2222 222222234444
Q ss_pred HHhcC--------CeEEEecccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 018665 77 ARIAD--------ATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147 (352)
Q Consensus 77 ~~~~g--------~~v~~i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~li 147 (352)
+...| -.+..+..+... +.+.+.+++ ++..|+..-... -..+....+.|.+.+++. |..++
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~ 561 (1082)
T PLN02672 492 LAIENATSDSKSDDVITVIEAPRQS------DLVIELIKKLKPQVVVTGMADF---EMRTSTAFEHLLNVTAEI-GARLF 561 (1082)
T ss_pred hhhhcccccCccCCeEEEEeCCCcc------hHHHHHHHhCCCeEEEEeccch---hhhhHHHHHHHHHHHHhh-CcEEE
Confidence 44332 344444433222 233444432 555555433332 223344589999999999 99999
Q ss_pred ecccccc-cccCCCCccccccCC--CCCCceEEEeccccccccccceeEEEEcC-hhHHHHHHhh
Q 018665 148 SDEIYEH-IIYAPATHTSFASLP--GMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKI 208 (352)
Q Consensus 148 vD~~~~~-~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~ 208 (352)
.|..... +.-......-+..+. ..+.+..++-.+-|.--.+.+-+.+++.- +.+...+.+.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1082)
T PLN02672 562 LDISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISENEAVLKALSKT 626 (1082)
T ss_pred EehhhheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEecCcHHHHHHHHHH
Confidence 9987432 111111111111111 11234445555667665588899998854 4455555443
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.02 E-value=3.3 Score=35.53 Aligned_cols=272 Identities=12% Similarity=0.092 Sum_probs=142.0
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCC---EEEecCCCCCChHHHHHhcCCe-EEEecccCCC-CcccCHHHHHhhccCC
Q 018665 37 DQILVSNGAKQSILQAVLAVC--SPGD---EVIIPAPFWVSYPEMARIADAT-PVILPTRISE-NFLLDPKVLESKLTEK 109 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--~~~~---~vl~~~~~~~~~~~~~~~~g~~-v~~i~~~~~~-~~~~d~~~l~~~l~~~ 109 (352)
+=+++..|+|+-+..+...|. +.|+ =|+.-...-..+. -+++.|.. .+..+..... +-..|.+.++. +++
T Consensus 72 ~vlf~QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~-EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~~d 148 (370)
T KOG2790|consen 72 KVLFLQGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAE-EAKKYGTPNIVIPKLKSYTYGKVPDPSTWEL--NPD 148 (370)
T ss_pred eEEEEeCCCcccccccchhhhccccCCccceEEeccccHHHHH-HHHhhCCceEEeccccccccCcCCChhhccc--CCC
Confidence 345777888887777766665 3332 2222222222222 33344433 3333333211 11245554443 234
Q ss_pred eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEecccccccccc
Q 018665 110 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 189 (352)
Q Consensus 110 ~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g 189 (352)
.+.+++|.--...|.-++. +- .-... +.+++.|-+.-.+. .+..+. .--++++...|.+|.+|
T Consensus 149 a~yvyyCaNETVHGVEf~~-----~P-~~~~~-~~vlVaDmSSnflS----rpvDvs------k~gvi~aGAQKN~G~aG 211 (370)
T KOG2790|consen 149 ASYVYYCANETVHGVEFDF-----IP-VNDPK-GAVLVADMSSNFLS----RPVDVS------KFGVIFAGAQKNVGPAG 211 (370)
T ss_pred ccEEEEecCceeeceecCC-----CC-CCCCC-CceEEEecccchhc----CCccch------hcceEEeccccccCccc
Confidence 4567766655555665541 10 01133 78888887654432 111221 12266777889998776
Q ss_pred ceeEEEEcChhHHHHHHhhh------------hccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhc
Q 018665 190 WRLGYIAGPKHFVAACNKIQ------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 257 (352)
Q Consensus 190 ~~~g~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 257 (352)
+-.++.+++++....... ..-.-+++.+..++.-..++... ....+..+.+.-.+....+.+.+.
T Consensus 212 --~Tvvivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il-~~GGl~a~e~~n~~KskllYd~iD 288 (370)
T KOG2790|consen 212 --VTVVIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWIL-EKGGLAAMEKLNQEKSKLLYDAID 288 (370)
T ss_pred --cEEEEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHH-hcccHHHHHHHHHHHHHHHHHHHH
Confidence 455666766655432211 01112455555555444444211 134466666666777788888888
Q ss_pred ccCCceecCCC----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHH
Q 018665 258 ELEGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTT 331 (352)
Q Consensus 258 ~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~ 331 (352)
+..|+...+-. +-+.+.+++.+- +-..++.+...+++=+.+ .+...-+.+|-|+-- +-++
T Consensus 289 ~s~gfy~cpVe~~~RS~MNV~Fri~~d-----------~Le~eFLkeA~~~~mv~L---KGhRSVGGiRASlYNAisv~~ 354 (370)
T KOG2790|consen 289 NSNGFYRCPVEPSVRSRMNVPFRIEKD-----------ELEAEFLKEAAKEHMVQL---KGHRSVGGIRASLYNAISVEE 354 (370)
T ss_pred hcCCeEEcccchhhhhhcccceeecch-----------HHHHHHHHHHHHhhhhcc---ccccccccchhhhhccccHHH
Confidence 76565554222 222233333321 134556666665542222 234456889999865 8899
Q ss_pred HHHHHHHHHHHHhh
Q 018665 332 LQAAVERIKKGLLT 345 (352)
Q Consensus 332 l~~~~~~l~~~~~~ 345 (352)
.++++.-++++.+.
T Consensus 355 ~q~L~~~m~~F~k~ 368 (370)
T KOG2790|consen 355 VQKLAAFMKEFQKK 368 (370)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888753
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=83.25 E-value=7.3 Score=32.67 Aligned_cols=86 Identities=14% Similarity=0.051 Sum_probs=50.8
Q ss_pred HHHHHhcCCCCEEE-ecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHH
Q 018665 51 QAVLAVCSPGDEVI-IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 129 (352)
Q Consensus 51 ~~~~~l~~~~~~vl-~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~ 129 (352)
.++.+|.+++-.|. +..+.-......++..|.+++..+.+ |.+.|.++++ +...++++.+... ....+
T Consensus 13 ~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~-------~~~~l~~al~-g~d~v~~~~~~~~---~~~~~ 81 (233)
T PF05368_consen 13 SVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYD-------DPESLVAALK-GVDAVFSVTPPSH---PSELE 81 (233)
T ss_dssp HHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT--------HHHHHHHHT-TCSEEEEESSCSC---CCHHH
T ss_pred HHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccC-------CHHHHHHHHc-CCceEEeecCcch---hhhhh
Confidence 35555555554333 34444223345667889988766542 7899999998 5555555555332 22344
Q ss_pred HHHHHHHHHHhCCCEEEEe
Q 018665 130 LLDEIARIVAKHPRLLVLS 148 (352)
Q Consensus 130 ~l~~l~~~~~~~~~~~liv 148 (352)
.-+.+++.|++. |+-.++
T Consensus 82 ~~~~li~Aa~~a-gVk~~v 99 (233)
T PF05368_consen 82 QQKNLIDAAKAA-GVKHFV 99 (233)
T ss_dssp HHHHHHHHHHHH-T-SEEE
T ss_pred hhhhHHHhhhcc-ccceEE
Confidence 578889999998 875553
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK10595 SOS cell division inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=82.80 E-value=22 Score=28.13 Aligned_cols=87 Identities=6% Similarity=-0.074 Sum_probs=57.7
Q ss_pred hcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHH
Q 018665 56 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 135 (352)
Q Consensus 56 l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~ 135 (352)
+...+.-|+.-.|-+..+...++..|++...+-.-...+..-.+...|++++.+....|+....+ ..+.+.+++|-
T Consensus 52 l~~~~rwilwI~PP~~p~~~~L~~~Gl~l~rvl~v~~~~~~d~Lwa~EqaLrsG~~~aVL~Wlp~----~l~~~~~RRLQ 127 (164)
T PRK10595 52 LGQQSRWQLWLTPQQKLSREWLQASGLPLTKVMQLSQLSPCHTVEAMERALRTGNYSVVLGWLPD----ELTEEEHARLV 127 (164)
T ss_pred HhccCceEEEECCCCCCCHHHHHHcCCCcccEEEEecCCcHHHHHHHHHHHhhCCCcEEEECCcc----cCCHHHHHHHH
Confidence 34456678888999999999999999865554432112211245777888887776677766431 24567788888
Q ss_pred HHHHhCCCEEEE
Q 018665 136 RIVAKHPRLLVL 147 (352)
Q Consensus 136 ~~~~~~~~~~li 147 (352)
-.|+.. +.+.+
T Consensus 128 lAAe~g-~~l~f 138 (164)
T PRK10595 128 DAAQEG-NAMGF 138 (164)
T ss_pred HHHHhC-CCEEE
Confidence 777776 65444
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=80.35 E-value=15 Score=32.09 Aligned_cols=100 Identities=10% Similarity=0.047 Sum_probs=55.1
Q ss_pred CCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH---HHhcCCeEEEecccCCCCcccCHHHHHhhccC--
Q 018665 34 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTE-- 108 (352)
Q Consensus 34 ~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~---~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~-- 108 (352)
++.+-+++|.||+..=..+..-+.+.|.++++-+-.-.+..+. ++..| ++..+-.+-.+. -++.++.+.+++
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~--eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDR--EEIYRLAKKVKKEV 112 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCH--HHHHHHHHHHHHhc
Confidence 4566778887777766666666778787776666554444433 33445 555555442111 133334444433
Q ss_pred CeeEEEEcCCC---CCcccCCCHHHHHHHHH
Q 018665 109 KSRLLILCSPS---NPTGSVYPKNLLDEIAR 136 (352)
Q Consensus 109 ~~~~i~i~~p~---nptG~~~~~~~l~~l~~ 136 (352)
+..-|+++|.. .-...-.++++++...+
T Consensus 113 G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~ 143 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTGKKLLDCSDEEIQKTFD 143 (300)
T ss_pred CCceEEEeccccccCCCccCCCHHHHHHHHH
Confidence 33445566652 23334467777777654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 352 | ||||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 4e-72 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 3e-58 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 1e-57 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 1e-57 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 4e-57 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 4e-57 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 4e-57 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 2e-53 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 6e-53 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 3e-51 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 6e-41 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 3e-40 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 3e-35 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 1e-34 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-34 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 4e-32 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 5e-32 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 3e-31 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 2e-30 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 8e-30 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 8e-30 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 3e-28 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 3e-22 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 2e-21 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 2e-20 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 2e-20 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 4e-19 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 1e-18 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 6e-18 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 8e-18 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 1e-17 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 2e-17 | ||
| 1c7n_A | 399 | Crystal Structure Of Cystalysin From Treponema Dent | 5e-17 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 2e-16 | ||
| 3l8a_A | 421 | Crystal Structure Of Metc From Streptococcus Mutans | 4e-16 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 2e-15 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 9e-15 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 4e-14 | ||
| 3nra_A | 407 | Crystal Structure Of An Aspartate Aminotransferase | 1e-13 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 2e-13 | ||
| 3f6t_A | 533 | Crystal Structure Of Aspartate Aminotransferase (E. | 2e-11 | ||
| 2zy5_A | 546 | R487a Mutant Of L-Aspartate Beta-Decarboxylase Leng | 5e-11 | ||
| 2zy3_A | 546 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 5e-11 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 7e-11 | ||
| 3dzz_A | 391 | Crystal Structure Of A Putative Plp-Dependent Amino | 3e-10 | ||
| 3qgu_A | 449 | L,L-Diaminopimelate Aminotransferase From Chalmydom | 4e-10 | ||
| 3fdd_A | 533 | The Crystal Structure Of The Pseudomonas Dacunhae A | 4e-10 | ||
| 3cq5_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 4e-10 | ||
| 3cq4_A | 376 | Histidinol-Phosphate Aminotransferase From Coryneba | 4e-10 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 8e-10 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 8e-10 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 9e-10 | ||
| 1fg3_A | 356 | Crystal Structure Of L-Histidinol Phosphate Aminotr | 1e-09 | ||
| 1gew_A | 356 | Crystal Structure Of Histidinol-Phosphate Aminotran | 2e-09 | ||
| 3euc_A | 367 | Crystal Structure Of Histidinol-Phosphate Aminotran | 2e-09 | ||
| 3cq6_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 2e-09 | ||
| 2zy2_A | 544 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 3e-09 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 3e-09 | ||
| 3fdb_A | 377 | Crystal Structure Of A Putative Plp-Dependent Beta- | 4e-09 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 6e-09 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 7e-09 | ||
| 4fl0_A | 456 | Crystal Structure Of Ald1 From Arabidopsis Thaliana | 3e-08 | ||
| 2z1z_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 7e-08 | ||
| 3jtx_A | 396 | Crystal Structure Of Aminotransferase (np_283882.1) | 8e-08 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 1e-07 | ||
| 2f8j_A | 347 | Crystal Structure Of Histidinol-phosphate Aminotran | 1e-07 | ||
| 1uu1_A | 335 | Complex Of Histidinol-Phosphate Aminotransferase (H | 1e-07 | ||
| 3eia_A | 432 | Crystal Structure Of K270q Variant Of Ll-Diaminopim | 2e-07 | ||
| 3ei8_A | 432 | Crystal Structure Of K270n Variant Of Ll-Diaminopim | 2e-07 | ||
| 2z20_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 5e-07 | ||
| 1h1c_A | 335 | Histidinol-Phosphate Aminotransferase (Hisc) From T | 8e-07 | ||
| 3ezs_A | 376 | Crystal Structure Of Aminotransferase Aspb (Np_2074 | 1e-06 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 2e-06 | ||
| 1d2f_A | 390 | X-Ray Structure Of Maly From Escherichia Coli: A Py | 5e-06 | ||
| 3ffh_A | 363 | The Crystal Structure Of Histidinol-phosphate Amino | 5e-06 | ||
| 3hdo_A | 360 | Crystal Structure Of A Histidinol-Phosphate Aminotr | 6e-06 | ||
| 3ly1_A | 354 | Crystal Structure Of Putative Histidinol-Phosphate | 1e-05 | ||
| 3fkd_A | 350 | The Crystal Structure Of L-Threonine-O-3-Phosphate | 1e-05 | ||
| 3p1t_A | 337 | Crystal Structure Of A Putative Aminotransferase (B | 1e-05 | ||
| 2c7t_A | 418 | Crystal Structure Of The Plp-Bound Form Of Btrr, A | 8e-05 | ||
| 4gdy_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 1e-04 | ||
| 4ge7_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 1e-04 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 2e-04 | ||
| 1vp4_A | 425 | Crystal Structure Of A Putative Aminotransferase (T | 2e-04 | ||
| 3ue8_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 3e-04 | ||
| 2r2n_A | 425 | The Crystal Structure Of Human Kynurenine Aminotran | 3e-04 | ||
| 2xh1_A | 425 | Crystal Structure Of Human Kat Ii-Inhibitor Complex | 3e-04 | ||
| 3dr4_A | 391 | Gdp-Perosamine Synthase K186a Mutant From Caulobact | 5e-04 | ||
| 3dr7_A | 391 | Gdp-perosamine Synthase From Caulobacter Crescentus | 5e-04 | ||
| 3bn1_A | 373 | Crystal Structure Of Gdp-Perosamine Synthase Length | 5e-04 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 8e-04 |
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola Contains A Pyridoxal 5'-Phosphate Cofactor Length = 399 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533 | Back alignment and structure |
|
| >pdb|2ZY5|A Chain A, R487a Mutant Of L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391 | Back alignment and structure |
|
| >pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas Reinhardtii Length = 449 | Back alignment and structure |
|
| >pdb|3FDD|A Chain A, The Crystal Structure Of The Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme Length = 533 | Back alignment and structure |
|
| >pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum In Complex With Pmp Length = 369 | Back alignment and structure |
|
| >pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Length = 376 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356 | Back alignment and structure |
|
| >pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356 | Back alignment and structure |
|
| >pdb|3EUC|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase (Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A Resolution Length = 367 | Back alignment and structure |
|
| >pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Holo-Form (Plp Covalently Bound ) Length = 369 | Back alignment and structure |
|
| >pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 544 | Back alignment and structure |
|
| >pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456 | Back alignment and structure |
|
| >pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432 | Back alignment and structure |
|
| >pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|2F8J|A Chain A, Crystal Structure Of Histidinol-phosphate Aminotransferase (ec 2.6.1.9) (imidazole Acetol-phosphate Transferase) (tm1040) From Thermotoga Maritima At 2.40 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|1UU1|A Chain A, Complex Of Histidinol-Phosphate Aminotransferase (Hisc) From Thermotoga Maritima (Apo-Form) Length = 335 | Back alignment and structure |
|
| >pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Length = 432 | Back alignment and structure |
|
| >pdb|1H1C|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From Thermotoga Maritima Length = 335 | Back alignment and structure |
|
| >pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A Modulator In Mal Gene Expression Length = 390 | Back alignment and structure |
|
| >pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate Aminotransferase From Listeria Innocua Clip11262. Length = 363 | Back alignment and structure |
|
| >pdb|3HDO|A Chain A, Crystal Structure Of A Histidinol-Phosphate Aminotransferase From Geobacter Metallireducens Length = 360 | Back alignment and structure |
|
| >pdb|3LY1|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate Aminotransferase (Yp_050345.1) From Erwinia Carotovora Atroseptica Scri1043 At 1.80 A Resolution Length = 354 | Back alignment and structure |
|
| >pdb|3FKD|A Chain A, The Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Porphyromonas Gingivalis Length = 350 | Back alignment and structure |
|
| >pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase (Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60 A Resolution Length = 337 | Back alignment and structure |
|
| >pdb|2C7T|A Chain A, Crystal Structure Of The Plp-Bound Form Of Btrr, A Dual Functional Aminotransferase Involved In Butirosin Biosynthesis. Length = 418 | Back alignment and structure |
|
| >pdb|4GDY|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|4GE7|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425 | Back alignment and structure |
|
| >pdb|3UE8|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|2R2N|A Chain A, The Crystal Structure Of Human Kynurenine Aminotransferase Ii In Complex With Kynurenine Length = 425 | Back alignment and structure |
|
| >pdb|2XH1|A Chain A, Crystal Structure Of Human Kat Ii-Inhibitor Complex Length = 425 | Back alignment and structure |
|
| >pdb|3DR4|A Chain A, Gdp-Perosamine Synthase K186a Mutant From Caulobacter Crescentus With Bound Sugar Ligand Length = 391 | Back alignment and structure |
|
| >pdb|3DR7|A Chain A, Gdp-perosamine Synthase From Caulobacter Crescentus With Bound Gdp-3-deoxyperosamine Length = 391 | Back alignment and structure |
|
| >pdb|3BN1|A Chain A, Crystal Structure Of Gdp-Perosamine Synthase Length = 373 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 485 bits (1250), Expect = e-173
Identities = 141/320 (44%), Positives = 197/320 (61%), Gaps = 15/320 (4%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
++NGL Y D ILV+NG KQSI +LA+ PGDEVIIPAPFWVSYPEM ++A+ TPVIL
Sbjct: 82 RDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVIL 141
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PT + F + P+ + +T K++LL+ +PSNPTG VY + + IA+ VA L VL
Sbjct: 142 PTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQ-VAVEAGLWVL 200
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
SDEIYE I+Y A H S + P +ER++ +GF+K +AMTGWR+G++AGP V A
Sbjct: 201 SDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAAT 260
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
KIQ TS + +Q +AA + V +M+ AF ERR +++ + + G++ +
Sbjct: 261 KIQGHSTSNVCTFAQYGAIAAYE---NSQDCVQEMLAAFAERRRYMLDALNAMPGLECPK 317
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
P GAFY+F + +S C LLD+ QVA VPG AFG D CIR+SYA
Sbjct: 318 PDGAFYMFPSIA----------KTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA 367
Query: 327 ASLTTLQAAVERIKKGLLTL 346
L T++ +ER++K L +
Sbjct: 368 TDLDTIKRGMERLEKFLHGI 387
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 473 bits (1219), Expect = e-168
Identities = 126/323 (39%), Positives = 181/323 (56%), Gaps = 16/323 (4%)
Query: 28 KENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
K+NG+ P +I+V GA Q+ L + A G+EV+IP P +VSY +A PV
Sbjct: 78 KQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVE 137
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
+PT + F L+ L+ +T+K+R LI+ SP NPTG+V K L+EIA V +H L+V
Sbjct: 138 VPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHD-LIV 196
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+SDE+YEH IY A H S ASL GM+ERT+TVNGFSK FAMTGWRLG++A P +
Sbjct: 197 ISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMV 256
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
K Q + + Q A AL + V +M K + RR + K E+ G+ +
Sbjct: 257 KFQMYNATCPVTFIQYAAAKAL-KDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVK 314
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRIS 324
P+GAFY+F S+ +L +A+VA+VPG AFG + +RIS
Sbjct: 315 PKGAFYIFPRIRDT----------GLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRIS 364
Query: 325 YAASLTTLQAAVERIKKGLLTLR 347
YA + L+ A++R+++ L +
Sbjct: 365 YATAYEKLEEAMDRMERVLKERK 387
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 470 bits (1212), Expect = e-167
Identities = 112/314 (35%), Positives = 182/314 (57%), Gaps = 22/314 (7%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ +PDQ++V+NGAKQ++ A +A+ PGDEVI+ +P WVSY +A T ++
Sbjct: 93 ERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVV 152
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
T +S+NF + +E L K++ +++ SP+NPTG VY + L+ + R +AK ++
Sbjct: 153 ETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVR-LAKKRNFYII 211
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
SDE+Y+ ++Y TS + ++R + +NGFSK+ +MTGWR+GY+ + A +K
Sbjct: 212 SDEVYDSLVYTDE-FTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSK 270
Query: 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
IQS TS ++++Q A + AL S MV+ F+ER++F+V+ ++ GVK EP
Sbjct: 271 IQSHTTSCINTVAQYAALKAL------EVDNSYMVQTFKERKNFVVERLKKM-GVKFVEP 323
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 327
+GAFYLF + C LL++ +VALVPG AF +R+S+A
Sbjct: 324 EGAFYLFFKVR-------------GDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT 370
Query: 328 SLTTLQAAVERIKK 341
S+ L A++RI+
Sbjct: 371 SIERLTEALDRIED 384
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 461 bits (1190), Expect = e-164
Identities = 125/316 (39%), Positives = 181/316 (57%), Gaps = 16/316 (5%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ENGLS TP++ +V+ G Q++ A+ PGDEVI+ +P+WVSYPEM R A V +
Sbjct: 83 RENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEV 142
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
T E F+ DP+ + +T +++ L++ SP+NPTG+VYPK +L+ +AR+ +H ++
Sbjct: 143 ETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHD-FYLV 201
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
SDEIYEH++Y H S + E TLTVNG +KAFAMTGWR+GY GPK + A
Sbjct: 202 SDEIYEHLLYEGE-HFSPGRVAP--EHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMAS 258
Query: 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
+ Q T+ +I+Q A + AL A V +A+R RRD L++ L G+K P
Sbjct: 259 VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRP 317
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 327
GAFY+ +D S + LL+ A VA+VPG F +R+SYA
Sbjct: 318 SGAFYVLMDTSPIAP----------DEVRAAERLLE-AGVAVVPGTDFAAFGHVRLSYAT 366
Query: 328 SLTTLQAAVERIKKGL 343
S L+ A+ER + L
Sbjct: 367 SEENLRKALERFARVL 382
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 443 bits (1143), Expect = e-156
Identities = 73/328 (22%), Positives = 133/328 (40%), Gaps = 22/328 (6%)
Query: 28 KENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
G D ++++ G + ++ AV A + GD+V I P + + ++ + V
Sbjct: 93 AFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVP 152
Query: 87 LP----TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 142
+ + LD LE +R+ + +P+NP G VY + +IA + A++
Sbjct: 153 VQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYG 212
Query: 143 RLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPKHF 201
V++D++Y + YA A++T + + E +T+ G SK +++G+RLG G +
Sbjct: 213 -ATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAI 271
Query: 202 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 261
+A K+Q+ + A+ SQ + + + RD L+ EG
Sbjct: 272 IARMEKLQAIVSLRAAGYSQAVLRGWFD---EAPGWMEDRIARHQAIRDELLHVLRGCEG 328
Query: 262 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT-- 319
V PQ YLF + L +A V + PG F T
Sbjct: 329 VFARTPQAGSYLFPRLP----------KLAVAPAEFVKILRLQAGVVVTPGTEFSPHTAD 378
Query: 320 CIRISYAASLTTLQAAVERIKKGLLTLR 347
+R++++ AA RI + R
Sbjct: 379 SVRLNFSQDHEAAVAAARRIVTLVERYR 406
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 427 bits (1100), Expect = e-150
Identities = 95/318 (29%), Positives = 148/318 (46%), Gaps = 32/318 (10%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ PD I+++ G+ + A+ ++ GDEV+I P + Y R A PV
Sbjct: 81 DKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFC 140
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
+ LE L++K++ +I+ SPSNP G V + EI ++ ++
Sbjct: 141 D--------FTVESLEEALSDKTKAIIINSPSNPLGEVIDR----EIYEFAYEN-IPYII 187
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
SDEIY ++Y S E+T+ +NGFSK +AMTGWR+GY+ + A K
Sbjct: 188 SDEIYNGLVYE-GKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAILK 246
Query: 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
+Q A +ISQ A + A ++ M+K F RR ++K + G +++ P
Sbjct: 247 LQQNLFISAPTISQYAALKAFEKE--TEREINSMIKEFDRRRRLVLKYVKDF-GWEVNNP 303
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISY 325
GA+Y+F + E+ LL + VAL PG FG IRISY
Sbjct: 304 IGAYYVFPNIG-------------EDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISY 350
Query: 326 AASLTTLQAAVERIKKGL 343
A S ++ +ERIK+ L
Sbjct: 351 ANSYENIKEGLERIKEFL 368
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 414 bits (1067), Expect = e-145
Identities = 79/331 (23%), Positives = 151/331 (45%), Gaps = 32/331 (9%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ + P+ +LV+NG ++IL + + +PGDE+++ PF+ +Y A+IA + +
Sbjct: 94 RRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPV 153
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
R+ E F + P+ LES + E+++ ++L +P NPTG VY K+ + + I +H L ++
Sbjct: 154 TRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHG-LFLI 211
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACN 206
DE+Y I++ S S+ ++ + ++ SK F+ G R+G I + ++
Sbjct: 212 VDEVYSEIVFR-GEFASALSI--ESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAM 268
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
K+ Q + Q V L + + +RER + ++K E + ++
Sbjct: 269 KLA-QGRLAPPLLEQIGSVGLLN---LDDSFFDFVRETYRERVETVLKKLEEHGLKRFTK 324
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL-----DKAQVALVPGDAFGDDT-- 319
P GAFY+ + +E++E R++L D + P F
Sbjct: 325 PSGAFYITAELP------------VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGL 372
Query: 320 ---CIRISYAASLTTLQAAVERIKKGLLTLR 347
IRI+ L A++ + +GL
Sbjct: 373 GKKEIRIACVLEKDLLSRAIDVLMEGLKMFC 403
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 409 bits (1054), Expect = e-143
Identities = 67/315 (21%), Positives = 125/315 (39%), Gaps = 20/315 (6%)
Query: 33 SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS 92
P+QIL +NGA + L + ++ PGD VI P + ++ + A +
Sbjct: 78 GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEE 137
Query: 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152
+L D + L + ++++ + + +NPTG+V + L+E+ I ++ +LSDE+Y
Sbjct: 138 NGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEV-GAYILSDEVY 196
Query: 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 212
+ S+ ++++ + VN SK +++ G R+G++A +
Sbjct: 197 RSF-----SELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYT 251
Query: 213 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 272
A AL E++ + E L + E V P
Sbjct: 252 MICAGVFDDLVAQLALA---HYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVST 308
Query: 273 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTL 332
F+ + E C LL + V LVPG+ F D +R+ +A TL
Sbjct: 309 SFVKIAV-----------DMPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFACEQETL 357
Query: 333 QAAVERIKKGLLTLR 347
+E++ + L
Sbjct: 358 IKGLEKLSQFLRRFD 372
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 404 bits (1041), Expect = e-141
Identities = 87/327 (26%), Positives = 161/327 (49%), Gaps = 22/327 (6%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
++NG+ TPD + V+ +++ A+ PGDE+++P P + Y + + PV
Sbjct: 93 RKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEY 152
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
T E++ D + K+T++++ + + +P+NPTG++Y K L+EI I ++ + V+
Sbjct: 153 RTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY-EIPVI 211
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA--GPKHFVAAC 205
SDEIY+ + Y H S SL + +NG SK + TGWRLGY+ P++ ++
Sbjct: 212 SDEIYDLMTYE-GEHISPGSLTKD-VPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEV 269
Query: 206 NKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 262
+ ++ ++ +Q A +A L + + + +K +ERRD++ K E+ G+
Sbjct: 270 REAIDRLARIRLCPNTPAQFAAIAGLT---GPMDYLKEYMKKLKERRDYIYKRLNEIPGI 326
Query: 263 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT--C 320
++PQGAFY+F +N + +L A V V G FG+
Sbjct: 327 STTKPQGAFYIFPKIEVG---------PWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGH 377
Query: 321 IRISYAASLTTLQAAVERIKKGLLTLR 347
R + + L+ A++R +K +
Sbjct: 378 FRAVFLPPIEILEEAMDRFEKFMKERL 404
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 393 bits (1012), Expect = e-136
Identities = 76/327 (23%), Positives = 141/327 (43%), Gaps = 39/327 (11%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVI 86
+G + D + ++ GA S+ A+ S DE I AP++ Y A A V
Sbjct: 91 NTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVE 150
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--- 143
+P E+F +D LE ++ +R +I+ SP+NP+G+VY + + +++ ++ K +
Sbjct: 151 VPADT-EHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIG 209
Query: 144 --LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 201
+ +++DE Y I+Y + ++ TL +SK+ ++ G R+GY+ P
Sbjct: 210 RPIFIIADEPYREIVY---DGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEV 266
Query: 202 VAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254
++ A S+ QK V G + + A++E RD L +
Sbjct: 267 YDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG--------ATGDINAYKENRDLLYE 318
Query: 255 SFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314
+ G +P GAFY+F+ ++S + C + V +V D
Sbjct: 319 GLTRI-GYHCFKPDGAFYMFVKAL------------EDDSNAFCEKAK-EEDVLIVAADG 364
Query: 315 FGDDTCIRISYAASLTTLQAAVERIKK 341
FG +RISY ++ ++ +K
Sbjct: 365 FGCPGWVRISYCVDREMIKHSMPAFEK 391
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 383 bits (987), Expect = e-133
Identities = 79/327 (24%), Positives = 139/327 (42%), Gaps = 25/327 (7%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ G+ P +++++ G+ L A A+ GD V I AP + SY ++ R PV L
Sbjct: 83 EWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDL 142
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PT P L++ SP+NPTG++ + + +
Sbjct: 143 PTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQ-GASFI 198
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
SDEIY I Y + + + +N FSK F+MTGWR+G++ P+ V +
Sbjct: 199 SDEIYHGIEYEAKAV----TALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVER 254
Query: 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
I A SQ A +AAL + + ++ R +++ + +++ P
Sbjct: 255 IAQNMFICAPHASQVAALAAL----DCDAELQANLDVYKANRKLMLERLPKAGFTRIAPP 310
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT---CIRIS 324
GAFY++ D S ++S + +L+KA VA+ PG F + +R S
Sbjct: 311 DGAFYVYADVSDL----------TDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFS 360
Query: 325 YAASLTTLQAAVERIKKGLLTLRPGVP 351
YA + ++ ++R++ + G
Sbjct: 361 YARATADIEEGLDRLEAFMQARGEGHH 387
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 385 bits (991), Expect = e-133
Identities = 50/348 (14%), Positives = 92/348 (26%), Gaps = 46/348 (13%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMARIADAT 83
+ + + G+ Q + L + P + RI
Sbjct: 97 LFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQK 156
Query: 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 143
L K+ T + +I +P+NPT L I + KH
Sbjct: 157 FESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKH-D 215
Query: 144 LLVLSDEIYEHIIY-----APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 198
++V+ D Y + + P S+ + + SKAF+ G R+G +
Sbjct: 216 VIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMIS 275
Query: 199 KHFV------------------AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240
A + +SGA+ +Q A L G
Sbjct: 276 GKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRD 335
Query: 241 MVKAFRERRDFLVKSFGEL-----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 295
V + + + K F + +EP + F Y G +S
Sbjct: 336 SVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYF--TVGYKG---------MDSS 384
Query: 296 SLCRYLLDKAQVALVPGDAFGDDT--CIRISYAASLTTLQAAVERIKK 341
L + A+ + + +R++
Sbjct: 385 KLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQM 432
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 383 bits (986), Expect = e-132
Identities = 78/330 (23%), Positives = 141/330 (42%), Gaps = 19/330 (5%)
Query: 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80
+ ++ +E + D +++ +G IL A+ A+C GD ++P P + Y + +
Sbjct: 89 RNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAY 148
Query: 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 140
R ++ D + +K++LLI+ +PSNP GS + + +++I R+ +
Sbjct: 149 GIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEE 208
Query: 141 HPRLLVLSDEIYEHIIY----APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 196
RL + SDEIY +++ AT TS A + + G +K + GWRLG++
Sbjct: 209 L-RLPLFSDEIYAGMVFKGKDPNATFTSVADFETTV-PRVILGGTAKNLVVPGWRLGWLL 266
Query: 197 GPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 251
+ ++ G ++ Q A AL E + ++V E +
Sbjct: 267 YVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNT--PQEHLDQIVAKIEESAMY 324
Query: 252 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311
L GE G+ + P+GA YL E + I+ LL++ V ++P
Sbjct: 325 LYNHIGECIGLAPTMPRGAMYLMSRIDL------EKYRDIKTDVEFFEKLLEEENVQVLP 378
Query: 312 GDAFGDDTCIRISYAASLTTLQAAVERIKK 341
G F R++ + + AVERIK
Sbjct: 379 GTIFHAPGFTRLTTTRPVEVYREAVERIKA 408
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 383 bits (985), Expect = e-132
Identities = 75/321 (23%), Positives = 135/321 (42%), Gaps = 16/321 (4%)
Query: 27 LKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
+++++G Q+I + + +PG +++P P + Y +A +
Sbjct: 109 YHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKL 168
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
+++ +D K LE + EK+ LI+ +PSNP GSV+ K L +I + A+ + +
Sbjct: 169 YNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQ-CVPI 227
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
L+DEIY ++++ + A+L L+ G +K + + GWRLG+I N
Sbjct: 228 LADEIYGDMVFSDCKYEPLATL-STDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGN 286
Query: 207 KIQ------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 260
+I+ SQ G +I Q A + L GE + + D + +
Sbjct: 287 EIRDGLVKLSQRILGPCTIVQGALKSILCRT--PGEFYHNTLSFLKSNADLCYGALAAIP 344
Query: 261 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 320
G++ P GA YL + E F + EN L+ + V +P F
Sbjct: 345 GLRPVRPSGAMYLMVGIEM------EHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNF 398
Query: 321 IRISYAASLTTLQAAVERIKK 341
IR+ + A RI++
Sbjct: 399 IRVVITVPEVMMLEACSRIQE 419
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 355 bits (913), Expect = e-121
Identities = 76/336 (22%), Positives = 148/336 (44%), Gaps = 25/336 (7%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ + V+ GA + IL ++ + + GDEVI+ PF+ Y + V +
Sbjct: 110 PIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYV 169
Query: 88 PTR----------ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 137
P E + +D + E +T K++ +I+ +P NP G V+ + L + I
Sbjct: 170 PINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNI 229
Query: 138 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IA 196
KH ++++SDE+YEH+ + + P + + TLTV K+FA TGWR+G+ ++
Sbjct: 230 CVKH-NVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLS 288
Query: 197 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 256
++ K ++ + S Q+A ++ KM + + + F
Sbjct: 289 LNAELLSYAAKAHTRICFASPSPLQEACANSINDA-LKIGYFEKMRQEYINKFKIFTSIF 347
Query: 257 GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES----LCRYLLDKAQVALVPG 312
EL G+ + P+G +++ +DFS E + + ++ + +L+++ V +P
Sbjct: 348 DEL-GLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPP 406
Query: 313 DAF-------GDDTCIRISYAASLTTLQAAVERIKK 341
F + +R + L+ AVER+K
Sbjct: 407 TEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKL 442
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 346 bits (890), Expect = e-116
Identities = 71/372 (19%), Positives = 127/372 (34%), Gaps = 61/372 (16%)
Query: 28 KENGLSYTPDQ---ILVSNGAKQSILQ-----AVLAVCSPGDEVIIPAPFWVSYPEMARI 79
+E G P + + G ++ + + GD+V I P + Y E+ +
Sbjct: 154 REMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPEL 213
Query: 80 ADAT--PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 137
A V + S N+ L+ ++ +PSNP + L+ + I
Sbjct: 214 AQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNI 273
Query: 138 VAKH-PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 196
VA+H P L++L+D++Y S ++ E TL V FSK F TGWRLG +A
Sbjct: 274 VAEHRPDLMILTDDVYGTFAD---DFQSLFAI--CPENTLLVYSFSKYFGATGWRLGVVA 328
Query: 197 GPKHFVAACNKIQSQFTSGASSISQKAGVA------------------------------ 226
+ V + Q + + + +
Sbjct: 329 AHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTP 388
Query: 227 --------ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 278
+L + +K RR+ + + ++ E +Y ID
Sbjct: 389 QQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLR-DENAVDYYTLIDLQ 447
Query: 279 ----TYYGSEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTC-IRISYAASLTTL 332
YG + K ++ + + D+ + L+PG FG + R S A
Sbjct: 448 DVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYE 507
Query: 333 QAAVERIKKGLL 344
AA+ R + +
Sbjct: 508 YAAIGRALRKMA 519
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 339 bits (871), Expect = e-115
Identities = 87/320 (27%), Positives = 157/320 (49%), Gaps = 22/320 (6%)
Query: 28 KENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
+ G D I V+ GA +++ A+ A+ GDEVI P + SY ++
Sbjct: 82 RLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKR 141
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
+ + +F +D + + L+E++RL+IL +P NP+ +V+ + + + +A H + V
Sbjct: 142 MALQ-PPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGH-EIFV 199
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+SDE+YEHI ++ H S + P + ER + V+ F K + MTGW++GY P A
Sbjct: 200 ISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIR 259
Query: 207 KIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 265
K+ Q+ + ++ +Q A L A E + +R++RD LV + E +++
Sbjct: 260 KVH-QYLTFSVNTPAQLALADMLR---AEPEHYLALPDFYRQKRDILVNALNES-RLEIL 314
Query: 266 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC----I 321
+G ++L +D+S + C++L + VA +P F D I
Sbjct: 315 PCEGTYFLLVDYSAV---------STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLI 365
Query: 322 RISYAASLTTLQAAVERIKK 341
R+ +A +TL AA ER+++
Sbjct: 366 RLCFAKKESTLLAAAERLRQ 385
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 338 bits (870), Expect = e-115
Identities = 101/339 (29%), Positives = 156/339 (46%), Gaps = 29/339 (8%)
Query: 28 KENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
+ G+ Y P+ ++LV+ GA ++I AVL + PG EV++ PF+ SY + +A A V
Sbjct: 77 RHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVT 136
Query: 87 LPTRI-SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 145
+P F LD L +T ++R LI+ SP NPTG+V L IA I L+
Sbjct: 137 VPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAA-NLV 195
Query: 146 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 205
V++DE+YEH+++ A H A GM ERT+T++ +K F TGW++G+ GP +A
Sbjct: 196 VITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGV 255
Query: 206 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 265
+ + + Q A AL V+ + + R RRD L E+ G +
Sbjct: 256 RAAKQYLSYVGGAPFQPAVALALDT---EDAWVAALRNSLRARRDRLAAGLTEI-GFAVH 311
Query: 266 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD------- 318
+ G ++L D G ++S C L +K VA +P AF D
Sbjct: 312 DSYGTYFLCADPR--------PLG-YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQ 362
Query: 319 ------TCIRISYAASLTTLQAAVERIKKGLLTLRPGVP 351
+R ++ TL A+ R+ GVP
Sbjct: 363 QADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPATGVP 401
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 337 bits (866), Expect = e-113
Identities = 79/385 (20%), Positives = 133/385 (34%), Gaps = 68/385 (17%)
Query: 20 VQQFVINLKENGLSYTPD-QILVSNGAKQSILQAVLAVCS-----PGDEVIIPAPFWVSY 73
+ F+ L + + + G +I+ A ++ GD++ I P + Y
Sbjct: 147 INYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPY 206
Query: 74 PEMARIADATPVI--LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 131
+ + D V L + ++ ++P +E + LI+ +P+NPT + N L
Sbjct: 207 LRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNAL 266
Query: 132 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 191
+ I + V K+P+L+++SDE+Y + S S+ + T+ V +SK F TGWR
Sbjct: 267 NAIKQAVEKNPKLMIISDEVYGAFVP---NFKSIYSV--VPYNTMLVYSYSKLFGCTGWR 321
Query: 192 LGYIAGPKHFV-------------AACNKIQSQFTSGASSISQKAGVAA----------- 227
LG IA + V +K S + + A
Sbjct: 322 LGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTA 381
Query: 228 --------------------LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
G + + K ER D L + + ++
Sbjct: 382 GLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDE-TDT 439
Query: 268 QGAFYLFIDFS----TYYGSE-AEGFGKIENSESLCRYLLDKAQVALVPGDAFG-DDTCI 321
+Y ID YG E + L +K V LV G FG +
Sbjct: 440 NTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGEL 499
Query: 322 RISYAASLTTLQAAVERIKKGLLTL 346
R+S A T I K +L L
Sbjct: 500 RVSQANLPTE---DYALIGKQVLEL 521
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 329 bits (846), Expect = e-111
Identities = 86/325 (26%), Positives = 153/325 (47%), Gaps = 27/325 (8%)
Query: 32 LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI 91
+ P+ ++V++GA +++ + ++ PGDEV++ PF+ Y A +A A ++ +
Sbjct: 74 FAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDL 133
Query: 92 SEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150
+ F LD LE LT ++R L+L +P NPTG V+ + L+ IAR+ H L ++SDE
Sbjct: 134 TPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISDE 192
Query: 151 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 210
+Y+ + Y ERT TV K TG+R+G+I GPK F+ ++
Sbjct: 193 VYDELYYGERPRRL---REFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQ 249
Query: 211 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 270
+ A + Q AL L + + +R RRD L + G+++ P+G
Sbjct: 250 WTSFSAPTPLQAGVAEALKLA-RREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGT 307
Query: 271 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC----IRISYA 326
++L + G+ L+++A+VAL+P AF + R ++
Sbjct: 308 YFLMAELP--------GWD--------AFRLVEEARVALIPASAFYLEDPPKDLFRFAFC 351
Query: 327 ASLTTLQAAVERIKKGLLTLRPGVP 351
+ L A+ER+ + + + R
Sbjct: 352 KTEEELHLALERLGRVVNSPREAEG 376
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 330 bits (847), Expect = e-111
Identities = 67/341 (19%), Positives = 135/341 (39%), Gaps = 27/341 (7%)
Query: 20 VQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79
+ F+ ++ N +++ P+ ++++ GA + + + PG+ V+IP P++ + +
Sbjct: 95 MVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKW 154
Query: 80 A-DATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLD 132
V + S F + LE E + + +++ +PSNP G+ +N L
Sbjct: 155 RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELY 214
Query: 133 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL---------PGMWERTLTVNGFSK 183
+ V + ++SDEIY ++ + S + +W+R V SK
Sbjct: 215 LLLSFVEDK-GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSK 273
Query: 184 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243
+ G+R+G I V A S F SS +Q A L +++ K
Sbjct: 274 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGL-VSSQTQHLLSAMLSDKKLTKNYIAENHK 332
Query: 244 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303
++R+ LV + G+ + ++D S E L + ++
Sbjct: 333 RLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSN-----TFEAEMELWKKIVY 386
Query: 304 KAQVALVPGDAFGDDT--CIRISYAASL-TTLQAAVERIKK 341
+ + + PG + R+ +A TL A++R+K
Sbjct: 387 EVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKA 427
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 328 bits (844), Expect = e-111
Identities = 100/335 (29%), Positives = 160/335 (47%), Gaps = 23/335 (6%)
Query: 28 KENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
K P+ +ILV+ GA S+ ++ + PGDEVII PF+ Y M R+A A PV
Sbjct: 76 KIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVF 135
Query: 87 LPTR---------ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 137
+P R S ++ DP+ LESK + K++ +IL +P NP G VY + L IA +
Sbjct: 136 IPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADL 195
Query: 138 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 197
KH L +SDE+YE ++Y TH A+LPGMWERT+T+ K F++TGW+LG+ G
Sbjct: 196 CVKHD-TLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIG 254
Query: 198 PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV----VSKMVKAFRERRDFLV 253
P H + +Q ++ Q A A + + + + K +RD +V
Sbjct: 255 PAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMV 314
Query: 254 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313
+ + G+K P G +++ D S+ ++ +++ ++ +P
Sbjct: 315 RLLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVS 373
Query: 314 AFGDD-------TCIRISYAASLTTLQAAVERIKK 341
AF D +R + +TL AA E +
Sbjct: 374 AFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRA 408
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 327 bits (841), Expect = e-110
Identities = 61/346 (17%), Positives = 132/346 (38%), Gaps = 27/346 (7%)
Query: 20 VQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79
+ +F+ + + + P++++++ GA + + + PGD ++P+P++ ++ R
Sbjct: 92 IAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRW 151
Query: 80 AD-ATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLD 132
+ + S NF + K ++ K + LIL +PSNP G+ K+ L
Sbjct: 152 RTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLK 211
Query: 133 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-------WERTLTVNGFSKAF 185
+ +H + ++ DEIY ++ S A + + V SK
Sbjct: 212 SVLSFTNQH-NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM 270
Query: 186 AMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244
+ G+R+G I V K+ S + A A L + +
Sbjct: 271 GLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLA--AMLSDEKFVDNFLRESAMR 328
Query: 245 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304
+R + G+K + + ++D ++ SL R +++
Sbjct: 329 LGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRES-----TFDSEMSLWRVIIND 382
Query: 305 AQVALVPGDAFGDDT--CIRISYAASL-TTLQAAVERIKKGLLTLR 347
++ + PG +F R+ +A T+ A+ RI++ + +
Sbjct: 383 VKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVEK 428
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 318 bits (817), Expect = e-107
Identities = 81/335 (24%), Positives = 152/335 (45%), Gaps = 23/335 (6%)
Query: 28 KENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
+ + P ++LV+ GA +++ + GDEVII PF+ Y M + A P
Sbjct: 92 QLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRF 151
Query: 87 LP--------TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 138
+P T S +++LD LE+ EK++++I+ +P NP G V + L+ +A +
Sbjct: 152 IPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLC 211
Query: 139 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 198
K +L +SDE+YEH+++ P H +LPGMWERT+T+ K F++TGW++G+ GP
Sbjct: 212 KKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGP 270
Query: 199 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGY----AGGEVVSKMVKAFRERRDFLVK 254
+ + + ++ Q+A + + + +RD++
Sbjct: 271 EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMAS 330
Query: 255 SFGELEGVKMSEPQGAFYLFIDFSTY-YGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313
E+ G+ + PQG +++ D+S+ + +++ + +P
Sbjct: 331 FLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPS 389
Query: 314 AFGDD-------TCIRISYAASLTTLQAAVERIKK 341
AF + +R + LQ A E ++K
Sbjct: 390 AFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRK 424
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 315 bits (810), Expect = e-106
Identities = 92/336 (27%), Positives = 157/336 (46%), Gaps = 28/336 (8%)
Query: 31 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 89
G P +LV+ G ++ A A+ GDEVII PF+ Y M +A PV +
Sbjct: 85 GQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSL 144
Query: 90 R----------ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA 139
+ S N+ LDP L K T +++ L+L +P+NP G V+ + L+ +A +
Sbjct: 145 KPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQ 204
Query: 140 KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 199
+H ++ ++DE+Y+ ++Y H S ASLPGMWERTLT+ K F+ TGW++G++ GP
Sbjct: 205 QH-DVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD 263
Query: 200 HFVAACNKIQSQFTS-GASSISQKAGVAALGLGYA----GGEVVSKMVKAFRERRDFLVK 254
H + + Q + + SQ A + + +A + RD +++
Sbjct: 264 HIMKHLRTVH-QNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIR 322
Query: 255 SFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI--ENSESLCRYLLDKAQVALVPG 312
S + G+K PQG+++L D S + + G + ++++ + +P
Sbjct: 323 SLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPV 381
Query: 313 DAFGDD-------TCIRISYAASLTTLQAAVERIKK 341
F IR + TLQA E+++K
Sbjct: 382 SIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRK 417
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 308 bits (791), Expect = e-103
Identities = 80/317 (25%), Positives = 145/317 (45%), Gaps = 16/317 (5%)
Query: 28 KENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
+ P+ + +V+ G+K+ + +LA GD +++P P + + A IA A
Sbjct: 90 DRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRS 149
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
+P +F + + + K R++IL PSNPT + + + + ++ ++V
Sbjct: 150 VPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQY-DVMV 208
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+ D Y I+Y S +PG + + SK++ M GWR+G++ G V+A
Sbjct: 209 VHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALA 268
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
+I+S G + Q A +AAL + V + + +++RRD LVK E G +
Sbjct: 269 RIKSYHDYGTFTPLQVAAIAALEGDQ---QCVRDIARQYQQRRDVLVKGLREA-GWMVEN 324
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRIS 324
P+ + Y++ E + + S + LL A+V++ PG FGD D +R +
Sbjct: 325 PKASMYVWAKIP-------EPYAHL-GSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFA 376
Query: 325 YAASLTTLQAAVERIKK 341
+ L+ AV IK
Sbjct: 377 LIENRDRLRQAVRGIKA 393
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 301 bits (773), Expect = e-100
Identities = 71/317 (22%), Positives = 137/317 (43%), Gaps = 21/317 (6%)
Query: 28 KENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
++ ++ + ++ + G K ++ V +PGD V++P P + Y +AD PV
Sbjct: 100 RQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVP 159
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
L ++L D ++S++ +K++L+ L P+NPTGS K + DE +
Sbjct: 160 LNLE-PPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGT-DTKI 217
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+ D Y + A + S + + + + SK + M+G+R+G+ G K + A
Sbjct: 218 VHDFAYGAFGFD-AKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALK 276
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
K Q+ +G Q A + AL + + + F+ RRD + +
Sbjct: 277 KYQTHTNAGMFGALQDAAIYALNH---YDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVH 332
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRIS 324
+G Y++++ Y SE ++L+ + + + PG FG+ + +RIS
Sbjct: 333 AKGGIYVWLETPPGYD-----------SEQFEQFLVQEKSILVAPGKPFGENGNRYVRIS 381
Query: 325 YAASLTTLQAAVERIKK 341
A L A R+ +
Sbjct: 382 LALDDQKLDEAAIRLTE 398
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 286 bits (734), Expect = 6e-95
Identities = 78/319 (24%), Positives = 140/319 (43%), Gaps = 24/319 (7%)
Query: 28 KENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
G+ P + L G+++ + +LA+ P D +++P + SY AR+A +
Sbjct: 78 GRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFL 137
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
+P R E+ L D K + + ++++L+L P+NPTG+V +E + KH L +
Sbjct: 138 IPLR--EDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKH-GLWL 194
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+ D Y +Y S +LPG ER + + SK++ + G+RLG+ G + +A
Sbjct: 195 IHDNPYVDQVYE-GEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLE 253
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
+++ + + GV AL EVV + +RER + ++ + +
Sbjct: 254 RVKGVIDFNQYAGVLRMGVEALKTPK---EVVRGYARVYRERALGMAEALK--GVLSLLP 308
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRIS 324
P+ YL+ L+++ VAL PG FG +RI+
Sbjct: 309 PRATMYLWGRLPEGVD-----------DLEFGLRLVERG-VALAPGRGFGPGGKGFVRIA 356
Query: 325 YAASLTTLQAAVERIKKGL 343
L L A +RI++ L
Sbjct: 357 LVRPLEELLEAAKRIREAL 375
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 283 bits (727), Expect = 2e-92
Identities = 67/343 (19%), Positives = 120/343 (34%), Gaps = 31/343 (9%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCS-PGDEVIIPAPFWVSYPEMARIADATPVI 86
+G D I +++GA + + + D +++P P + Y + V
Sbjct: 149 SRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVP 208
Query: 87 LPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 140
S + L+ ++ +L + R L++ +P NPTG V + +I +
Sbjct: 209 YYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKN 268
Query: 141 HPRLLVLSDEIYEHIIYAP-ATHTSFASL---PGMWERTL---TVNGFSKA-FAMTGWRL 192
L++L+DE+Y+ IY SF + G E L + SK + G R
Sbjct: 269 E-GLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG 327
Query: 193 GYIAGPKHFVAACNKIQSQFTSG--ASSISQKAGVAALGLGYAGGE-------VVSKMVK 243
GY +I + ++ Q + A E ++
Sbjct: 328 GYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILA 387
Query: 244 AFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYL 301
+ R L +F +LEG+ +E +GA Y+F I A+ L
Sbjct: 388 SLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAAN-KAPDAFYALRL 446
Query: 302 LDKAQVALVPGDAFGDDTC---IRISYAASLTTLQAAVERIKK 341
L+ + +VPG FG R + + A + R
Sbjct: 447 LESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTV 489
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 278 bits (712), Expect = 4e-91
Identities = 50/340 (14%), Positives = 105/340 (30%), Gaps = 47/340 (13%)
Query: 28 KENGLSYTPD-QILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPEMAR 78
+ G + D I+ G Q I V+++ P +V+ APF+ + E +
Sbjct: 114 EVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTK 173
Query: 79 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 138
D + + + + + ++ SP+NP G +
Sbjct: 174 YFDKKGY--------VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLR------------ 213
Query: 139 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAG 197
H ++ IY+ + Y P + + + + + SK +G R G+ +
Sbjct: 214 --HA-VIKGCKSIYDMVYYWP----HYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIK 266
Query: 198 PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG--------EVVSKMVKAFRERR 249
+ ++ T G +Q + L A ++ + K RER
Sbjct: 267 DESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERW 326
Query: 250 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVA 308
+ + + E + Y S + + K E + C ++
Sbjct: 327 VNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRIN 386
Query: 309 LVPGDAFG-DDTCIRISYAASLTTLQAAVERIKKGLLTLR 347
G F +R+S + + +K + R
Sbjct: 387 TQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKAKR 426
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 276 bits (709), Expect = 1e-90
Identities = 53/345 (15%), Positives = 125/345 (36%), Gaps = 40/345 (11%)
Query: 27 LKEN-GLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 84
L++N LS + +V+N + + D +++P W +Y + +
Sbjct: 102 LRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGAN 161
Query: 85 VILPTRISENFLLDPKVLESKLTEK---SRLLILCSPSNPTGSVYPKNLLDEIARIV--- 138
+ ++ L L ++IL P+NPTG + I +
Sbjct: 162 LQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKAL 221
Query: 139 -AKHPRLLVLSDEIYEHIIY----APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 193
K +++ + D+ Y + Y + T+ +L + ++G +K F G+R+G
Sbjct: 222 ANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVG 281
Query: 194 YIAGPKHFVAACNKIQSQF-------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246
++ ++++ S +Q A L + + + ++ +
Sbjct: 282 FMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLK 341
Query: 247 ERRDF---LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303
ER + +V + + + +++ I + E+L ++L+D
Sbjct: 342 ERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHD------------VDPEALRKHLID 389
Query: 304 KAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347
K + ++ +A IRI+++ + + I K + LR
Sbjct: 390 KYSIGVIALNATD----IRIAFSCVEKDDIPHVFDSIAKAIDDLR 430
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 274 bits (703), Expect = 5e-90
Identities = 83/319 (26%), Positives = 131/319 (41%), Gaps = 34/319 (10%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI-LPTRISEN 94
+I +S+GAK + +L+ P V I P + +Y ++AR+ A +I LP
Sbjct: 95 AKEIFISDGAKVDLF-RLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENA 153
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
F + +L LCSP+NPTG+V K+ L I +H +L+L D Y
Sbjct: 154 FFPEFPE-----DTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH-EILILFDAAYST 207
Query: 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC--------N 206
I P+ S +P + +N FSK G RLG+ P+ A
Sbjct: 208 FISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWE 267
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
+ S +GAS +Q+AGVA L + + +RE D L K+ G ++
Sbjct: 268 RFLSTTFNGASIPAQEAGVAGL-----SILPQLEAIHYYRENSDLLRKALLAT-GFEVFG 321
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRIS 324
+ A YL++ + S L + L + +A+ PG FG +R S
Sbjct: 322 GEHAPYLWVKPTQANIS----------DRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS 371
Query: 325 YAASLTTLQAAVERIKKGL 343
+ AA ER++
Sbjct: 372 SLGKREDILAACERLQMAP 390
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 276 bits (708), Expect = 1e-89
Identities = 75/369 (20%), Positives = 140/369 (37%), Gaps = 42/369 (11%)
Query: 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE---- 62
SQG +R V + I ++ G+ PD I ++ GA I + + S G +
Sbjct: 128 SQGVNCIR---EDVAAY-ITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTG 183
Query: 63 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS-----RLLILCS 117
V+IP P + Y + DA V + L+ L + E ++L + +
Sbjct: 184 VMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIIN 243
Query: 118 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASL-----PGM 171
P NPTG V + ++++ + +L +L+DE+Y+ +Y+P SF + P
Sbjct: 244 PGNPTGQVQSRKCIEDVIHFAWEE-KLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEY 302
Query: 172 WERTLTV--NGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQSQFTSGASSISQKAGV 225
+ SK + G+R GY+ K+ S +S +A +
Sbjct: 303 SSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLC--PPVSGQAAM 360
Query: 226 AALGLGYAGGE--------VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--I 275
+ GE ++ ++ F ++ G+ + QGA Y F I
Sbjct: 361 DIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRI 420
Query: 276 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAASLTTL 332
A+ + C LL++ + +VPG FG R++ + L
Sbjct: 421 FIPAKAVEAAQAHQ-MAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKL 479
Query: 333 QAAVERIKK 341
+ ++++K
Sbjct: 480 KTVLQKVKD 488
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 262 bits (673), Expect = 5e-85
Identities = 71/331 (21%), Positives = 126/331 (38%), Gaps = 49/331 (14%)
Query: 35 TPDQILVSNGAKQSI--LQAVLAVCSPGDEVIIPAPFWVSYPEMARIA------------ 80
D + VS+GAK I LQ + + + P + +Y + + I
Sbjct: 118 GDDDVFVSDGAKCDISRLQVMF---GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQK 174
Query: 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 140
+ F D ++ ++ CSP+NPTG+ + L ++ K
Sbjct: 175 YGNIEYMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKK 229
Query: 141 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 200
+ +++ D Y + S +PG E + FS TG RLG+ PK
Sbjct: 230 N-GSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKK 287
Query: 201 FVAAC--------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252
+ + N+I +GAS+ISQ +A L G E + K++ ++E + +
Sbjct: 288 LLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTP--EGLEAMHKVIGFYKENTNII 345
Query: 253 VKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312
+ +F L G + + A Y+++ F S + +L+K V PG
Sbjct: 346 IDTFTSL-GYDVYGGKNAPYVWVHFPNQS------------SWDVFAEILEKTHVVTTPG 392
Query: 313 DAFGD--DTCIRISYAASLTTLQAAVERIKK 341
FG + +R+S + A R K+
Sbjct: 393 SGFGPGGEGFVRVSAFGHRENILEACRRFKQ 423
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 249 bits (637), Expect = 2e-79
Identities = 72/329 (21%), Positives = 130/329 (39%), Gaps = 42/329 (12%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP---------- 84
D+I +S+G+K I + + V + P + Y + + + T
Sbjct: 131 AADEIFISDGSKCDIA-RIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGI 189
Query: 85 VILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 144
+ +F D +++ ++ CSP+NPTG+ + L E+ K+
Sbjct: 190 EYMVCNPDNHFFPDLSK-----AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN-GS 243
Query: 145 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 204
+++ D Y I P + +PG E + FSK TG RLG+ PK A
Sbjct: 244 ILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYA 303
Query: 205 C--------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 256
N++ + +GAS+I Q G+A L G + ++ M+K ++E L +F
Sbjct: 304 NGEPVHADWNRVMTTCFNGASNIVQAGGLACLQP--EGLKEMNAMIKFYKENAQILKTTF 361
Query: 257 GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316
E+ G + A Y+++ F S + +L++ + PG +G
Sbjct: 362 TEM-GFSVYGGDDAPYIWVGFPGKP------------SWDVFAEILERCNIVTTPGSGYG 408
Query: 317 D--DTCIRISYAASLTTLQAAVERIKKGL 343
+ +R S S + AV R K+
Sbjct: 409 PAGEGFVRASAFGSRENILEAVRRFKEAY 437
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 1e-73
Identities = 51/356 (14%), Positives = 113/356 (31%), Gaps = 56/356 (15%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVC---------------SPGDEVIIPAPFWVS 72
+ + T + I ++NG++ + ++ P ++
Sbjct: 98 RHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIG 157
Query: 73 YPEMARIADA----TPVILPTRISEN-----FLLDPKVLESKL---TEKSRLLILCSPSN 120
Y ++ P I + +D + LE+ + + P+N
Sbjct: 158 YSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTN 217
Query: 121 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 180
PTG+V + +A I ++ + ++ D Y + T+
Sbjct: 218 PTGNVLTDEEMAHLAEIAKRY-DIPLIIDNAYGMPFPNIIYS---DAHLNWDNNTILCFS 273
Query: 181 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240
SK + G R G I + A + + + + + ++
Sbjct: 274 LSK-IGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNE 332
Query: 241 MVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL 297
+ ++++ VK + + + +P+GA +L++ F ++ L
Sbjct: 333 IKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFK----------DLPISTLDL 382
Query: 298 CRYLLDKAQVALVPGDAFGDDT----------CIRISYAASLTTLQAAVERIKKGL 343
L K +VP + F CIR+S AA TL ++ I + +
Sbjct: 383 YERLKAK-GTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVV 437
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 220 bits (564), Expect = 6e-69
Identities = 50/337 (14%), Positives = 108/337 (32%), Gaps = 37/337 (10%)
Query: 28 KENGLSYTPDQILVSNGAKQSI---LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 84
+ G P I ++NG++ + + G + P Y A
Sbjct: 90 ETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDD 149
Query: 85 VILPTRI------SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 138
+ + R F + E++ ++ + P+NPTG+V L ++ R+
Sbjct: 150 LFVSARPNIELLPEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLA 209
Query: 139 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 198
+H + ++ D Y F+ +W + + + G R G I
Sbjct: 210 NQH-NIPLVIDNAYGVPFP----GIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIAN 264
Query: 199 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 258
+ A + + + + + + + +R +
Sbjct: 265 DKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRR 324
Query: 259 L---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315
E + +P+GA +L++ F +E L + L V +VPG F
Sbjct: 325 YLSEERCLIHKPEGAIFLWLWFK----------DLPITTELLYQRLK-ARGVLMVPGHYF 373
Query: 316 GDDT---------CIRISYAASLTTLQAAVERIKKGL 343
C+R++Y ++A V+ + + +
Sbjct: 374 FPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEI 410
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 4e-63
Identities = 57/322 (17%), Positives = 115/322 (35%), Gaps = 39/322 (12%)
Query: 31 GLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILP 88
+ ++++ + G+++ + V + P PF+ Y A+ A +++P
Sbjct: 77 KIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMP 136
Query: 89 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 148
+F L K ++ L+IL SP+NPTG L ++ KH ++++
Sbjct: 137 LTKENDFTPS---LNEKELQEVDLVILNSPNNPTGRTLSLEELISWVKLALKH-DFILIN 192
Query: 149 DEIYEHIIYAPATHTSF-----ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 203
DE Y I Y S + ++ L ++ SK + G R G+IAG +
Sbjct: 193 DECYSEI-YENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLE 251
Query: 204 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 263
++ +++ QKA AA + K F
Sbjct: 252 KYKAFRAYLGYTSANAIQKASEAAWL----DDRHAEFFRNIYANNLKLARKIFKNTLI-- 305
Query: 264 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC--- 320
+FY+++ ++N E+ + L + +P G +
Sbjct: 306 ---YPYSFYVYL--------------PVQNGENFAKTLYQNEGIITLPALYLGRNRIGAD 348
Query: 321 -IRISYAASLTTLQAAVERIKK 341
+R++ L+ +E I+
Sbjct: 349 YVRLALVYDTPLLEKPLEIIET 370
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 1e-53
Identities = 55/319 (17%), Positives = 104/319 (32%), Gaps = 40/319 (12%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDE----VIIPAPFWVSYPEMARIADATPVILPTRI 91
I+V G+ Q AV A+ S V+ APF+ +Y E +
Sbjct: 91 DRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMY------ 144
Query: 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151
+ D + + + ++ SP+NP G + + + V+ D
Sbjct: 145 --KWEGDAWGFD---KKGPYIELVTSPNNPDG-----TIRETVVNR-PDDDEAKVIHDFA 193
Query: 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACNKIQS 210
Y Y P + + + + + FSK G R+G+ + K +
Sbjct: 194 Y----YWP----HYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYII 245
Query: 211 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF-------RERRDFLVKSFGELEGVK 263
+ G S SQ L + + S+ F + R + L + E +
Sbjct: 246 VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFT 305
Query: 264 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT-CIR 322
+ + AF + + A + + L L + +V G+ G D +R
Sbjct: 306 LPKYPEAFCNYFGK-SLESYPAFAWLGTKEETDLVSELR-RHKVMSRAGERCGSDKKHVR 363
Query: 323 ISYAASLTTLQAAVERIKK 341
+S + +ER+
Sbjct: 364 VSMLSREDVFNVFLERLAN 382
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 4e-51
Identities = 71/332 (21%), Positives = 139/332 (41%), Gaps = 42/332 (12%)
Query: 30 NGLSYTPD-QILVSNGAKQSILQAVLAVCSP-----GDEVIIPAPFWVSYPEMARIADAT 83
+GL+ D +IL G+++++ V V +P ++ P PF+ Y +
Sbjct: 84 DGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGE 143
Query: 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 143
+ +F D + + ++ ++++L+ +CSP+NP+GSV + E+ + K+
Sbjct: 144 IHFANCP-APSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKY-G 201
Query: 144 LLVLSDEIYEHIIYAPATHTSF----ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 199
++ SDE Y I + A L ++ L SK + G R G++AG
Sbjct: 202 FIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDA 261
Query: 200 HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 259
+ ++ S S Q+A +AA + V + ++E+ + ++ ++
Sbjct: 262 ELLKNFLLYRTYHGSAMSIPVQRASIAAWD----DEQHVIDNRRLYQEKFERVIPILQQV 317
Query: 260 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL--CRYLLDKAQVALVPGDAFGD 317
VK+ P +FY+++ K+ + + L R L KA + ++PG
Sbjct: 318 FDVKL--PDASFYIWL--------------KVPDGDDLAFARNLWQKAAIQVLPGRFLAR 361
Query: 318 DTC--------IRISYAASLTTLQAAVERIKK 341
DT +RI+ A + T A E I
Sbjct: 362 DTEQGNPGEGYVRIALVADVATCVKAAEDIVS 393
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 4e-49
Identities = 72/316 (22%), Positives = 133/316 (42%), Gaps = 31/316 (9%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT--PVILPTRISE 93
P+ I + + A+ +VI+P P +YP + AT I I
Sbjct: 81 PEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTP---AYPPFFHLLSATQREGIF---IDA 134
Query: 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153
++ +E +R ++LC+P NP G V+ L+E+ + ++ VL DEI+
Sbjct: 135 TGGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRY-DARVLVDEIHA 193
Query: 154 HIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQ 211
+++ HT A + +T+ SKA+ + G + I ++
Sbjct: 194 PLVF-DGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPV 252
Query: 212 FTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQG 269
GAS++ A AA Y G +++ V + DFL+ + + G K++ Q
Sbjct: 253 IKDGASTLGLIAAEAA----YRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQA 308
Query: 270 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAA 327
+ ++IDF S + ++KA+VA+ G FG+D R+++A
Sbjct: 309 TYLMWIDFRDT-----------TIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT 357
Query: 328 SLTTLQAAVERIKKGL 343
S L+ A++R+ K +
Sbjct: 358 SREVLEEAIDRMAKAV 373
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 8e-48
Identities = 50/334 (14%), Positives = 128/334 (38%), Gaps = 36/334 (10%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---P 84
++ + ++ + + + G+ V+I P +Y + +
Sbjct: 79 TQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTP---AYDAFYKAIEGNQRTV 135
Query: 85 VILPTRISEN-FLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 142
+ + + + D LE+ L + + ++++LCSP NPTG V+ + L+ +A + +H
Sbjct: 136 MPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERH- 194
Query: 143 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 202
+ V+SDEI+ +++ H ++++ + SK+F + Y +
Sbjct: 195 GVRVISDEIHMDMVWGEQPHIPWSNVAR--GDWALLTSGSKSFNIPALTGAYG------I 246
Query: 203 AACNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEV-VSKMVKAFRERRDFLVKSF 256
+ + + S + + L L Y G + + ++ ++
Sbjct: 247 IENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKM 306
Query: 257 GE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315
+ PQ + ++D + L + L+++ +VA++PG +
Sbjct: 307 NAAFPELNWQIPQSTYLAWLDLRPLNIDDNA----------LQKALIEQEKVAIMPGYTY 356
Query: 316 GDD--TCIRISYAASLTTLQAAVERIKKGLLTLR 347
G++ +R++ + L+ V + + +R
Sbjct: 357 GEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 390
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 4e-47
Identities = 62/332 (18%), Positives = 135/332 (40%), Gaps = 30/332 (9%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---P 84
E+ D + ++G +I V SPGD++++ P Y + +
Sbjct: 77 IEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEP---VYNMFYSVIEGNGRRV 133
Query: 85 VILPTRISEN-FLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 142
+ + + ++ LE KL T R+++ C+P NP G + + + IA + AKH
Sbjct: 134 ISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKH- 192
Query: 143 RLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPK 199
++L++SDEI+ ++ T ++ +++ SK F + I P
Sbjct: 193 QVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPD 252
Query: 200 HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE 258
A + ++ A +AA Y G + ++ + R+ + + +
Sbjct: 253 LRARAEESFFLAGIGEPNLLAIPAAIAA----YEEGHDWLRELKQVLRDNFAYAREFLAK 308
Query: 259 -LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317
+ VK+ + ++ ++D S + + C+YL +K + + G+ +
Sbjct: 309 EVPEVKVLDSNASYLAWVDISALGMNAED----------FCKYLREKTGLIISAGNGYRG 358
Query: 318 D--TCIRISYAASLTTLQAAVERIKKGLLTLR 347
+ +RI+ A + ++R+K+G+L L
Sbjct: 359 NGHEFVRINLACPKELVIDGMQRLKQGVLNLN 390
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 7e-47
Identities = 75/332 (22%), Positives = 128/332 (38%), Gaps = 30/332 (9%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---P 84
+ D I+ + G ++ AV PGD VII P Y
Sbjct: 81 DRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITP---VYYPFFMAIKNQERKI 137
Query: 85 VILPTRISEN-FLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 142
+ + + +D + LE + ++ L+ CSP NP G V+ K+ L +I IV K
Sbjct: 138 IECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKS- 196
Query: 143 RLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPK 199
L++ SDEI+ +I HT F S+ + ++T+T SK F + G + I P
Sbjct: 197 DLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPD 256
Query: 200 HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE 258
+ +++ KA Y + +K + + + F
Sbjct: 257 IRERFTKSRDATSGMPFTTLGYKACEIC----YKECGKWLDGCIKVIDKNQRIVKDFFEV 312
Query: 259 -LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317
+K +G + +IDF + +++ KAQ+ G FGD
Sbjct: 313 NHPEIKAPLIEGTYLQWIDFRALKMDHKA----------MEEFMIHKAQIFFDEGYIFGD 362
Query: 318 D--TCIRISYAASLTTLQAAVERIKKGLLTLR 347
RI+ AA + +Q ++ER+ K L L+
Sbjct: 363 GGIGFERINLAAPSSVIQESLERLNKALKDLK 394
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 1e-46
Identities = 83/331 (25%), Positives = 147/331 (44%), Gaps = 37/331 (11%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---P 84
+ + + ++ S G +I + + D+++I P Y +
Sbjct: 82 RRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEP---VYSPFNSVVKNNNREL 138
Query: 85 VILPTRISEN--FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 142
+I P + EN +++D + +E+K+ + +L ILC+P NP G V+ K+ L ++ I KH
Sbjct: 139 IISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKH- 196
Query: 143 RLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP--- 198
+ ++SDEI+ II H AS+ + T+T +K F + G + Y+ P
Sbjct: 197 NVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEK 256
Query: 199 --KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKS 255
K A +I + S A A+ Y GE + ++ DF +K
Sbjct: 257 DYKLLDDAFTRID---IKRNNCFSLVATEAS----YNNGESWLESFLEYLESNIDFAIKY 309
Query: 256 FGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314
E + +K+ +P+G + L++DFS S+ E L L+ K +VAL G++
Sbjct: 310 INENMPKLKVRKPEGTYLLWVDFSALGLSDEE----------LESILVQKGKVALNQGNS 359
Query: 315 FGDD--TCIRISYAASLTTLQAAVERIKKGL 343
FG RI+ A + L+ A+ RIK +
Sbjct: 360 FGIGGSGYQRINLACPRSMLEEALIRIKNAI 390
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 9e-46
Identities = 79/331 (23%), Positives = 142/331 (42%), Gaps = 36/331 (10%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---P 84
E+ S+ + I+ G +I A+ A G+ V+I +P YP AR
Sbjct: 81 SEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSP---VYPPFARSVRLNNRKL 137
Query: 85 VILPTRISEN-FLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 142
V + F +D + LE+ + E +L +LC+P NP G V+ + +L++I + KH
Sbjct: 138 VSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKH- 196
Query: 143 RLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP--- 198
++++SDEI++ + H SF ++ P + L ++ +K F + G + Y
Sbjct: 197 HVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPT 256
Query: 199 --KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKS 255
F SS+ A A Y G+ + + E F V+
Sbjct: 257 LCAQFKHQQLVN---NHHEVSSLGYIATETA----YRYGKPWLVALKAVLEENIQFAVEY 309
Query: 256 FGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314
F + +K+ +PQG + +++DFS Y ++ L L D+A+V L G
Sbjct: 310 FAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDA----------LFTLLHDQAKVILNRGSD 359
Query: 315 FGDD--TCIRISYAASLTTLQAAVERIKKGL 343
+G + R++ AA + ++ +RI L
Sbjct: 360 YGSEGELHARLNIAAPKSLVEEICKRIVCCL 390
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-45
Identities = 76/327 (23%), Positives = 141/327 (43%), Gaps = 29/327 (8%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---P 84
KE+ + + IL +G +I A+ A GD V+I +P Y AR
Sbjct: 111 KEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSP---VYYPFARTIRLNDHRL 167
Query: 85 VILPTRISEN-FLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 142
V +I F +D + LE + + ++ +LCSP NP G V+ + L +IA + KH
Sbjct: 168 VENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKH- 226
Query: 143 RLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPK 199
++++SDEI++ + TH S +L + T+ ++ +K F + G + + I
Sbjct: 227 GVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNES 286
Query: 200 HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE 258
+ + ++ A AA + G+ + ++ ++K
Sbjct: 287 LRRKFQYRQLANNQHEVPTVGMIATQAA----FQYGKPWLEELKTVIEGNIKLVIKELEA 342
Query: 259 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 318
+K+ EP+G + +++DFS Y ++ + L L ++A+V L G FG +
Sbjct: 343 KTKIKVMEPEGTYLVWLDFSAYAIAQPQ----------LSEKLQNEAKVVLNDGAHFGKE 392
Query: 319 --TCIRISYAASLTTLQAAVERIKKGL 343
R++ A T+Q A+ RI
Sbjct: 393 GKYFARLNVATPKNTVQEALSRIISVF 419
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 5e-40
Identities = 58/293 (19%), Positives = 102/293 (34%), Gaps = 33/293 (11%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 95
IL NG +SI + +I P + Y + R ++ +
Sbjct: 76 ASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGW 133
Query: 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155
L +LE LT L LC+P+NPTG + + LL IA L+L DE +
Sbjct: 134 QLTDAILE-ALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLIL-DEAFID- 190
Query: 156 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACNKIQSQFTS 214
+ P T F + +K +A+ G RLGY + +A + Q ++
Sbjct: 191 -FIPH-ETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWS- 247
Query: 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 274
++++ AG AL RE ++ +L + + + + L
Sbjct: 248 -VNALAALAGEVALQD----SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLL 302
Query: 275 IDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDAFG--DDTCIRIS 324
+ E L R LL + ++ + + D R++
Sbjct: 303 ---------------RCEREDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVA 339
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 7e-40
Identities = 59/297 (19%), Positives = 109/297 (36%), Gaps = 41/297 (13%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
++++ + G + I + ++ P +V Y + A I A +P ++
Sbjct: 83 EEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QD 140
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIY 152
D + + + + EK+ ++ +C+P+NPTG+ +I + + P L+VL DE Y
Sbjct: 141 GEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIEL---ADIQAFLDRVPSDVLVVL-DEAY 196
Query: 153 EHIIYAPATHTSFASLPGMWE-----RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 207
Y L ++ RT FSK + + R+GY K + N
Sbjct: 197 IE--YVTPQPEKHEKLVRTYKNLIITRT-----FSKIYGLASARVGYGIADKEIIRQLNI 249
Query: 208 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267
++ F +SI QK + A+ + + + E VK+
Sbjct: 250 VRPPF--NTTSIGQKLAIEAI----KDQAFIGECRTSNANGIKQYEAFAKRFEKVKLYPA 303
Query: 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324
G F + ID + ++ YL G A G T +RI+
Sbjct: 304 NGNF-VLIDLG-------------IEAGTIFSYLEKNG-YITRSGAALGFPTAVRIT 345
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 7e-38
Identities = 63/292 (21%), Positives = 114/292 (39%), Gaps = 37/292 (12%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
T D + +NG+ + + Q + A PG + P + +P +A+ + + +
Sbjct: 91 TRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG--AD 148
Query: 95 FLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153
F +D LE ++ ++ + +P+NPTG V LD++ RI+ P ++++ DE Y
Sbjct: 149 FRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTS---LDDVERIINVAPGIVIV-DEAY- 203
Query: 154 HIIYAPATHTSFASLPGMWERTLTVNG-FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 212
+ S +L + L V+ SKAF G RLGY F+ A ++ +
Sbjct: 204 ---AEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLPY 260
Query: 213 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 272
S++SQ A + AL V+ R + EL G + + F
Sbjct: 261 --HLSALSQAAAIVAL----RHSADTLGTVEKLSVERVRVAARLEEL-GYAVVPSESNFV 313
Query: 273 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324
FG + + + LD+ L+ G +R +
Sbjct: 314 F--------------FGDFSDQHAAWQAFLDRG--VLI--RDVGIAGHLRTT 347
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-37
Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 34/294 (11%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISE 93
P+Q+LVS GA + I + A C PG D ++ P + Y A +PT +
Sbjct: 74 KPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--D 131
Query: 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-RLLVLSDEIY 152
N+ LD + + KL + +++ +CSP+NPTG + + ++ + +V++DE Y
Sbjct: 132 NWQLDLQGISDKL-DGVKVVYVCSPNNPTGQLINP---QDFRTLLELTRGKAIVVADEAY 187
Query: 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 212
I + P S A + + SKAFA+ G R G+ + + K+ + +
Sbjct: 188 --IEFCPQ--ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY 243
Query: 213 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 272
S+ AL G + + V R++L+ + E+ V+
Sbjct: 244 PL--STPVADIAAQALSP--QGIVAMRERVAQIIAEREYLIAALKEIPCVE--------- 290
Query: 273 LFIDFSTYYGSEAEGF--GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324
+ SE + + + S ++ + L D+ + C+RI+
Sbjct: 291 ------QVFDSETN-YILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRIT 337
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 2e-37
Identities = 57/293 (19%), Positives = 109/293 (37%), Gaps = 31/293 (10%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
IL++ G+ + I A+ A S +++IP + A+IA + +N
Sbjct: 67 EAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKML--DN 124
Query: 95 FLLDPKVLESKLTEK--SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-RLLVLSDEI 151
+ D + L++ + ++ L +P+NPTG++ P D I +A P + + DE
Sbjct: 125 WAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPA---DVIEPWIASKPANTMFIVDEA 181
Query: 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 211
Y + P + + E + + FSK AM G R+GY +A + +
Sbjct: 182 YAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG 241
Query: 212 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 271
+ A +A++ ++ K+ R L+K+ +L + +G F
Sbjct: 242 E--KINFSGVDAALASM----NDSAFITYSKKSNDVSRQILLKALEDL-KLPYLPSEGNF 294
Query: 272 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324
+F + ++ D L+ D RIS
Sbjct: 295 -VFHQLV-------------VPLKDYQTHMADAG--VLIGRAFPPADNWCRIS 331
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 3e-37
Identities = 54/293 (18%), Positives = 112/293 (38%), Gaps = 42/293 (14%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 95
+ ILV+NG + Q A G +I P + Y + R+ + P+ E+
Sbjct: 67 NNAILVTNGPTAAFYQIAQAF--RGSRSLIAIPSFAEYEDACRMYEHEVCFYPSN--EDI 122
Query: 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155
LC+P+NP G + + EI R++ HP + D+ Y
Sbjct: 123 G-------EADFSNMDFCWLCNPNNPDGRLLQR---TEILRLLNDHPDTTFVLDQSYVS- 171
Query: 156 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 215
+ A + G + + V FS A+ + G R+GYI K F+ + +
Sbjct: 172 -FTTEEVIRPADIKG-RKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTPWA-- 227
Query: 216 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 275
++++ +A L + ++ ++ + + L+GV++ F+L
Sbjct: 228 VNALAIEAAKFIL----IHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTTFFLL- 282
Query: 276 DFSTYYGSEAEGFGKIENSES--LCRYLLDKAQVALVPGDAFG--DDTCIRIS 324
+++ + L +Y+L++ + + F D++ +RI+
Sbjct: 283 --------------RLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRIT 321
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 4e-37
Identities = 51/292 (17%), Positives = 112/292 (38%), Gaps = 32/292 (10%)
Query: 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 95
I++ NGA + I ++ ++++I P + Y A+ + V EN
Sbjct: 78 DIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLD--ENM 131
Query: 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155
+D + + SK+ + +I+ +P+NP G + K + ++ + + +++ DE + I
Sbjct: 132 CIDYEDIISKIDDV-DSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIII-DEAF--I 187
Query: 156 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACNKIQSQFTS 214
+ +SF + + +K FAM G R GY I K A Q+ +
Sbjct: 188 EFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPWN- 246
Query: 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 274
+ ++ A + L + + + ++ R ++ ++ +K A ++
Sbjct: 247 -INCFAEMAAINCL----KDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHANFVL 301
Query: 275 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRIS 324
+ E L LL + + + F DD+ +R +
Sbjct: 302 CRLENI------------SGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFA 340
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 8e-37
Identities = 68/331 (20%), Positives = 125/331 (37%), Gaps = 35/331 (10%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
K + L +P+ I+++ G ++ + PGD VI P +++ A +
Sbjct: 90 KYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGV 149
Query: 88 PTRISENFLLDPKVLESKLTEKSRL-----LILCSPS--NPTGSVYPKNLLDEIARIVAK 140
P +N + +LE K+ E LI P+ NP G + I +K
Sbjct: 150 PV---DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASK 206
Query: 141 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 200
+ LL++ D Y + Y +L R + SK TG+R+G+I
Sbjct: 207 Y-DLLIIEDTAYNFMRYEGGDIVPLKALDNE-GRVIVAGTLSKVLG-TGFRIGWIIAEGE 263
Query: 201 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-L 259
+ + A +ISQ + L GY + + ++E+RD ++K+ L
Sbjct: 264 ILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL 323
Query: 260 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF---- 315
+ ++P ++ EG + S L+++ V +VPG F
Sbjct: 324 PNAEFTKPIAGMFVMFFL-------PEGA----DGISFANELMEREGVVVVPGKPFYTDE 372
Query: 316 GDDTCIRISYAASLTTLQAAVERIKKGLLTL 346
IR++++ + E I G+ L
Sbjct: 373 SGKNAIRLNFSR------PSKEEIPIGIKKL 397
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 6e-36
Identities = 58/291 (19%), Positives = 111/291 (38%), Gaps = 38/291 (13%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
P I+++NG+ + + + A + G+E+ P + Y +A + A +
Sbjct: 81 DPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLT--GD 138
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
F + + ++ L +P+ P G +P L+ I + + +LVL DE Y
Sbjct: 139 FRIAGFP----ERYEGKVFFLTTPNAPLGPSFP---LEYIDELARRCAGMLVL-DETY-- 188
Query: 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 214
+A + + L E + SK++++ G R+G +AA +KI+ +
Sbjct: 189 AEFAES---NALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDHYN- 244
Query: 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 274
++Q A VAAL +S+ + RE R++ + G + QG + LF
Sbjct: 245 -LDRLAQAACVAAL----RDQAYLSECCRRIRETREWFTTELRSI-GYDVIPSQGNY-LF 297
Query: 275 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAFGDDTCIRIS 324
+ + + L + LV +RIS
Sbjct: 298 ATPPD------------RDGKRVYDGLYARK--VLVRHFSDPLLAHGMRIS 334
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-35
Identities = 56/299 (18%), Positives = 109/299 (36%), Gaps = 42/299 (14%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
+ I++ G+ Q I A+ + + + + + Y A+ A + +
Sbjct: 81 QNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSI--TH 138
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIY 152
L + K L ++ +L+ LC P+NP G E + L+V+ D Y
Sbjct: 139 NLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDA---SEATEFIKGVNEDCLVVI-DAAY 194
Query: 153 EHIIYAPATHTSFASLPGMWE-------RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 205
+ + E T FSK + + G R+GY + ++A
Sbjct: 195 NEFASFKDSKKHLEPCELIKEFDNVLYLGT-----FSKLYGLGGLRIGYGIANANIISAF 249
Query: 206 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 265
K+++ F S+++ KA VAA+ E K ++ + + + + +K+
Sbjct: 250 YKLRAPF--NVSNLALKAAVAAM----DDDEFTEKTLENNFSQMELYKEFAKKH-NIKII 302
Query: 266 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324
+ F + F NS L LL K + + ++G + IRI+
Sbjct: 303 DSYTNF-ITYFFDEK------------NSTDLSEKLLKKG-IIIRNLKSYGLN-AIRIT 346
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-34
Identities = 65/330 (19%), Positives = 133/330 (40%), Gaps = 41/330 (12%)
Query: 30 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARIADATPVI 86
+ P+++L++ G++Q++ G V++ AP SY + R+ +
Sbjct: 85 EWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAP---SYMGAIQAFRLQGPRFLT 141
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPS--NPTGSVYPKNLLDEIARIVAKHPRL 144
+P D LE L + + PS NPTG + P + ++V + L
Sbjct: 142 VPA---GEEGPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMER-GL 197
Query: 145 LVLSDEIYEHIIYAPATHTSFASL--PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 202
+V+ D+ Y + + A S L + + + FSK + G R+ + +
Sbjct: 198 VVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEAL 256
Query: 203 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL--E 260
+ + ++Q L G++ E + ++ + +RE+ ++ + +
Sbjct: 257 QKLVQAKQGADLHTPMLNQMLVHELLKEGFS--ERLERVRRVYREKAQAMLHALDREVPK 314
Query: 261 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF----G 316
V+ + P+G +++++ +G ++E L R L + VA VPG F G
Sbjct: 315 EVRYTRPKGGMFVWMEL-------PKGL----SAEGLFRRAL-EENVAFVPGGPFFANGG 362
Query: 317 DDTCIRISYAASLTTLQAAVERIKKGLLTL 346
+ +R+SYA E I +G+ L
Sbjct: 363 GENTLRLSYAT------LDREGIAEGVRRL 386
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 2e-34
Identities = 54/290 (18%), Positives = 99/290 (34%), Gaps = 40/290 (13%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
D +++ G + + + P + Y ++ + ++
Sbjct: 67 PEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLT--DD 122
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
LLDP L + ++L +PSNPTG E+ ++ + L++ DE Y
Sbjct: 123 LLLDPNDLAQ--VSRDDCVVLANPSNPTGQALS---AGELDQLRQRAG-KLLI-DETYVD 175
Query: 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 214
Y+ A L FSK++ + G RLG + GP +AA + Q
Sbjct: 176 --YSSFRARGLAYGE----NELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQWFCNV 229
Query: 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 274
++ A AAL + +R + + L G +++ + F L
Sbjct: 230 --GTLDLHALEAAL----DNDRAREAHIAKTLAQRRRVADALRGL-GYRVASSEANFVLV 282
Query: 275 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324
+ E R+L ++ + + FG IRIS
Sbjct: 283 ---------------ENAAGERTLRFLRERG-IQVKDAGQFGLHHHIRIS 316
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 5e-34
Identities = 64/297 (21%), Positives = 120/297 (40%), Gaps = 40/297 (13%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
++L+ NG+ + I LA PG +V+ P P +V Y A+ A V +P R +
Sbjct: 84 AGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR--AD 141
Query: 95 FLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP----RLLVLSD 149
F LD +L + + ++ L P+NPTG+++ ++ IV R LV+ D
Sbjct: 142 FTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFD---AADMEAIVRAAQGSVCRSLVVVD 198
Query: 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 209
E Y+ +A S+ S + L + SK + G RLGY+AG ++ +K++
Sbjct: 199 EAYQP--FAQE---SWMSRLTDFGNLLVMRTVSK-LGLAGIRLGYVAGDPQWLEQLDKVR 252
Query: 210 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 269
+ + +++ + AL V+ + R R + + GV +
Sbjct: 253 PPYNV--NVLTEATALFAL----EHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAA 306
Query: 270 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRIS 324
F L ++ ++ LL + +V + C+R++
Sbjct: 307 NFLLA---------------RVPDAAQTFDRLLAR-KVLIKNVSKMHPLLANCLRVT 347
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-32
Identities = 67/339 (19%), Positives = 129/339 (38%), Gaps = 48/339 (14%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARIADATP 84
D ++ + G++Q++ ++ P +Y R A
Sbjct: 101 MYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDP---AYLGAINAFRQYLANF 157
Query: 85 VILPTRISENFLLDPKVLESKLTEKSRLLILCSP---------SNPTGSVYPKNLLDEIA 135
V++P E+ +D VLE KL+E + + NP G +
Sbjct: 158 VVVPL---EDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALV 214
Query: 136 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 195
I K+ L ++ D+ Y + Y T + G ER + +N FSK A G R+G +
Sbjct: 215 EIAEKY-DLFIVEDDPYGALRYEGETVDPIFKI-GGPERVVLLNTFSKVLA-PGLRIGMV 271
Query: 196 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 255
AG K F+ + + + +I+ + L E + ++ +R +R ++ +
Sbjct: 272 AGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNA 330
Query: 256 ----FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311
F ++ GVK + +G ++++ EGF ++ + Y + +V VP
Sbjct: 331 LEEYFSDIPGVKWVKSEGGLFIWLTL-------PEGF----DTWEMFEYAK-RKKVFYVP 378
Query: 312 GDAF----GDDTCIRISYAASLTTLQAAVERIKKGLLTL 346
G F +R+S+ E+I +G+ L
Sbjct: 379 GRVFKVYDEPSPSMRLSFCL------PPDEKIVEGIKRL 411
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-31
Identities = 63/336 (18%), Positives = 143/336 (42%), Gaps = 44/336 (13%)
Query: 27 LKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARIADAT 83
L + + I++++G++Q++ +PGD V++ AP +Y + +
Sbjct: 131 LGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAP---TYLAALQAFNFYEPQ 187
Query: 84 PVILPTRISENFLLDPKVLESKLTEKSRL-----LILCSPS--NPTGSVYPKNLLDEIAR 136
+ +P ++ + ++LE KL E ++ P+ NP G ++ +
Sbjct: 188 YIQIPL---DDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLE 244
Query: 137 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 196
+ +++ +V+ D+ Y + Y+ +L R + + FSK A G+R+G++
Sbjct: 245 LASEY-DFIVVEDDPYGELRYSGNPEKKIKALDNE-GRVIYLGTFSKILA-PGFRIGWMV 301
Query: 197 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 256
G + + + Q + GY + + ++ K ++ RRD ++++
Sbjct: 302 GDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL-EKHIPEIRKFYKPRRDAMLEAL 360
Query: 257 GEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314
E EGVK ++P+G ++++ +G +S+ + + K VA VPG+A
Sbjct: 361 EEFMPEGVKWTKPEGGMFIWVTL-------PDGI----DSKKMLERAI-KKGVAYVPGEA 408
Query: 315 F----GDDTCIRISYAASLTTLQAAVERIKKGLLTL 346
F +R+++ ++I +G+ L
Sbjct: 409 FYAHRDVKNTMRLNFTY------VDEDKIMEGIKRL 438
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 59/340 (17%), Positives = 126/340 (37%), Gaps = 44/340 (12%)
Query: 29 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 88
S + V++G++Q + + + +PGD V++ P + + + +
Sbjct: 101 HYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVA 160
Query: 89 TRISENFLLDPKVLESKLTEKSRL-----------LILCSPS--NPTGSVYPKNLLDEIA 135
+ + + P L L+ + P+ NPTG+ EI
Sbjct: 161 S---DESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIY 217
Query: 136 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL--PGMWERTLTVNGFSKAFAMTGWRLG 193
+ K+ L++ D+ Y + + +F S+ G R + + FSK + +G R+G
Sbjct: 218 ELARKY-DFLIIEDDPYYFLQFNKFRVPTFLSMDVDG---RVIRADSFSKIIS-SGLRIG 272
Query: 194 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG--EVVSKMVKAFRERRDF 251
++ GPK + T S+ +Q L G V +++ + ++D
Sbjct: 273 FLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDA 332
Query: 252 LVKSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309
++ + + + P +L+I I + + L K V +
Sbjct: 333 ILAAADKWLTGLAEWHVPAAGMFLWIKVK-----------GINDVKELIEEKAVKMGVLM 381
Query: 310 VPGDAF-----GDDTCIRISYA-ASLTTLQAAVERIKKGL 343
+PG+AF +R S++ AS + A + + + +
Sbjct: 382 LPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLI 421
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 4e-29
Identities = 45/344 (13%), Positives = 101/344 (29%), Gaps = 57/344 (16%)
Query: 32 LSYTPDQILVSNGAKQSILQAVLAVC--------------SPGDEVIIPAPFWVSYPEMA 77
L +Q+L + + +I+ V++ + I P P Y
Sbjct: 91 LGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVP---GYDRHF 147
Query: 78 RI-ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP--SNPTGSVYPKNLLDEI 134
I ++ ++E+ D +E + + P SNPTG +++ +
Sbjct: 148 SITERFGFEMISVPMNEDGP-DMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRL 206
Query: 135 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-----GMWERTLTVNGFSKAFAMTG 189
+ + P V+ D Y + G R SK G
Sbjct: 207 SAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITL-AG 265
Query: 190 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 249
+ + G + ++Q A G V+ K + +
Sbjct: 266 AGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKF 325
Query: 250 DF----LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 305
+ L E + + P G +++ +D + + A
Sbjct: 326 NKVLEILDSRLAEYGVAQWTVPAGGYFISLDV----------------VPGTASRVAELA 369
Query: 306 Q---VALVPGDAF------GDDTCIRISYA-ASLTTLQAAVERI 339
+ +AL + ++ +R++ + + L+ A++ +
Sbjct: 370 KEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGV 413
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-28
Identities = 59/270 (21%), Positives = 107/270 (39%), Gaps = 41/270 (15%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
+ + + V NGA + I +L D + P + Y A+ A + +P ++
Sbjct: 75 SKNNVSVGNGADEIIYVMMLM----FDRSVFFPPTYSCYRIFAKAVGAKFLEVPLT--KD 128
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
+ + ++ + +P+NPTG V+ +EI RI+ V DE Y
Sbjct: 129 LRIPEVN-----VGEGDVVFIPNPNNPTGHVFE---REEIERILKTGA--FVALDEAY-- 176
Query: 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 214
S+ +E + FSKAF++ R+GY+ + F+ A N+++ F
Sbjct: 177 ---YEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLPFNV 233
Query: 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 274
S +SQ AL E+ + K E R+ + + E+ G ++++ +G F
Sbjct: 234 --SYVSQMFAKVAL----DHREIFEERTKFIVEERERMKSALREM-GYRITDSRGNFVFV 286
Query: 275 IDFSTYYGSEAEGFGKIENSESLCRYLLDK 304
F + E E L +L K
Sbjct: 287 -------------FMEKEEKERLLEHLRTK 303
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 6e-28
Identities = 46/354 (12%), Positives = 104/354 (29%), Gaps = 77/354 (21%)
Query: 32 LSYTPDQILVSNGAKQSILQAVLA--------------VCSPGDEVIIPAPFWVSY---- 73
L D ++ +G+ +I+ +++ + + P P Y
Sbjct: 89 LGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVP---GYDRHF 145
Query: 74 -------PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP--SNPTGS 124
EM + + D V+ + + + P NPTG
Sbjct: 146 TITEHFGFEMINVP-----------MTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGV 194
Query: 125 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-----GMWERTLTVN 179
+ + E+A + P ++ D Y + + G R ++
Sbjct: 195 TFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMS 254
Query: 180 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239
SK G + + A K + + G + ++Q A G +
Sbjct: 255 STSKITH-AGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHML 313
Query: 240 KMVKAFRERRDF----LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 295
K + + + L E K + P G +++ +D
Sbjct: 314 KHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDV----------------VP 357
Query: 296 SLCRYLLDKAQ---VALVPGDAF------GDDTCIRISYA-ASLTTLQAAVERI 339
+++ A+ +AL + ++ IR++ + + L+ A++
Sbjct: 358 GTASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGF 411
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 56/339 (16%), Positives = 110/339 (32%), Gaps = 47/339 (13%)
Query: 27 LKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE-MARIADATPV 85
L N S ++++ + + S ++I+ P Y +
Sbjct: 91 LVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVP---GYDRHFLLLQTLGFE 147
Query: 86 ILPTRISENFLLDPKVLESKLTEKSRL-LILCSP--SNPTGSVYPKNLLDEIARIVAKHP 142
+L + + D +E + IL P SNP G +A + A P
Sbjct: 148 LLTVDMQSDG-PDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAP 206
Query: 143 RLLVLSDEIYEHIIYA------PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 196
+ +D+ Y P A G +R SK G LG++A
Sbjct: 207 DFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITF-AGAGLGFVA 265
Query: 197 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE-----VVSKMVKAFRERRDF 251
+ + +K + G + + Q V L G E + + FR +
Sbjct: 266 SSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEV 325
Query: 252 LVKSFGEL-EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ---V 307
L GE E + P+G +++ +D +E + ++ A+ V
Sbjct: 326 LRAELGEGGEYATWTLPKGGYFISLDT----------------AEPVADRVVKLAEAAGV 369
Query: 308 ALVPGDAF------GDDTCIRISYA-ASLTTLQAAVERI 339
+L P A + +R++ + ++ A++ +
Sbjct: 370 SLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVV 408
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-08
Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 25/127 (19%)
Query: 37 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA--------RIADATPVILP 88
D V+NGA+++ + ++ V++ E A ++P
Sbjct: 70 DVARVTNGAREAKFAVMHSLAKKDAWVVM--------DENCHYSSYVAAERAGLNIALVP 121
Query: 89 TRISENFLLDPKVLESKLTEKSR-----LLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 143
++ + P+ + E + L ++ P G++ + +IA++ +++
Sbjct: 122 KTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEY-D 177
Query: 144 LLVLSDE 150
+ +L +
Sbjct: 178 VPLLVNG 184
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 2e-06
Identities = 58/373 (15%), Positives = 105/373 (28%), Gaps = 142/373 (38%)
Query: 18 SFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD---EV---------II 65
S I+L + ++ TPD++ S+L L C P D EV II
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVK-------SLLLKYLD-CRPQDLPREVLTTNPRRLSII 333
Query: 66 PAP---------FW--VSYPEMARIADA-----TP----------VILP--TRISENFLL 97
W V+ ++ I ++ P + P I L
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 98 ---------DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR----IVAKHPRL 144
D V+ +KL + S L+ P T S+ ++ E+ A H +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIP--SIYLELKVKLENEYALHRSI 449
Query: 145 L-----------------VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 187
+ L Y HI + H E + F F
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNI------EHPERMTLFRMVF-- 497
Query: 188 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 247
L + F+ KI + A G + ++ +
Sbjct: 498 ----LDF-----RFLEQ--KI------------RHDSTAWNASGS-----ILNTLQQLKF 529
Query: 248 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307
+ ++ + + E + +DF + S+ LL ++
Sbjct: 530 YKPYICDNDPKYERL--------VNAILDFLPKIEE------NLICSKYTD--LL---RI 570
Query: 308 ALV-PGDAFGDDT 319
AL+ +A ++
Sbjct: 571 ALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-06
Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 40/158 (25%)
Query: 12 QMRVLWSFVQQF----------VINLKENGLSYTPDQILVSNGAK---QSILQAVLAVCS 58
Q L++ Q F + L++ L P + ++ +G ++ + L VC
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCL 172
Query: 59 PGDEVIIPAP----FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 114
+ FW++ + V+ + + L ++ T SR
Sbjct: 173 --SYKVQCKMDFKIFWLN---LKNCNSPETVL---EMLQKLLYQ---IDPNWT--SRSDH 219
Query: 115 LCSPSNPTGSVYPKNLLDEIARIVA--KHPR-LLVLSD 149
+ S+ E+ R++ + LLVL +
Sbjct: 220 SSNIKLRIHSIQ-----AELRRLLKSKPYENCLLVLLN 252
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* Length = 393 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 20/97 (20%)
Query: 59 PGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSRLLIL 115
GDEVI P+ WVS M + A PV + + ++ P+ +E+ +T +++ +I
Sbjct: 78 EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR----DTLMVTPEHIEAAITPQTKAII- 132
Query: 116 CSPSNP---TGSVYPKNLLDEIARIVAKHPRLLVLSD 149
P G P + LD I + ++ + V+ D
Sbjct: 133 -----PVHYAG--APAD-LDAIYALGERY-GIPVIED 160
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} Length = 424 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 6e-06
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 26/119 (21%)
Query: 39 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPF-WVSYPEMARIADATPV---ILPTRIS 92
+ N LQ + EVI+P + + P R TPV I P
Sbjct: 71 VATCNATAG----LQLLAHAAGLTGEVIMP-SMTFAATPHALRWIGLTPVFADIDP---- 121
Query: 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSD 149
+ LDP + + +T ++ ++ ++ P D++ ++ +H L + D
Sbjct: 122 DTGNLDPDQVAAAVTPRTSAVV------GV-HLWGRPCA-ADQLRKVADEH-GLRLYFD 171
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* Length = 367 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 30/122 (24%)
Query: 39 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 93
I +NG A Q + A L V PGDEVI P +V+ E + A PV I P
Sbjct: 54 ISCANGTDALQIVQMA-LGV-GPGDEVITPGFTYVATAETVALLGAKPVYVDIDP----R 107
Query: 94 NFLLDPKVLESKLTEKSRLLI------LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
+ LDP++LE+ +T +++ +I C+ D I I +K+ + V+
Sbjct: 108 TYNLDPQLLEAAITPRTKAIIPVSLYGQCAD------------FDAINAIASKY-GIPVI 154
Query: 148 SD 149
D
Sbjct: 155 ED 156
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* Length = 418 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 26/120 (21%)
Query: 39 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 93
+ ++G+ + L L GDEVI+P+ W++ +A PV + +
Sbjct: 61 VPTTSGS--TALMLALEALGIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEA----D 114
Query: 94 NFLLDPKVLESKLTEKSRLLI----LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
+ +DP++++S +T+K++ +I S +N +DEI I +H L V+ D
Sbjct: 115 TYCIDPQLIKSAITDKTKAIIPVHLFGSMAN----------MDEINEIAQEH-NLFVIED 163
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Length = 399 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 30/122 (24%)
Query: 39 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 93
+ V++G A Q L+ L + PGDEVI+P+ +++ ATPV +
Sbjct: 82 VGVNSGMDALQLALRG-LGI-GPGDEVIVPSHTYIASWLAVSATGATPVPVEPHE----D 135
Query: 94 NFLLDPKVLESKLTEKSRLLI------LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
+ LDP ++E +T ++R L+ + +D + + +H L ++
Sbjct: 136 HPTLDPLLVEKAITPRTRALLPVHLYGHPAD------------MDALRELADRH-GLHIV 182
Query: 148 SD 149
D
Sbjct: 183 ED 184
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} Length = 374 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 6e-05
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 25/119 (21%)
Query: 39 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 96
I V G A + L + GDEVI A +++ A ATPV ++
Sbjct: 57 IGVGTGTDALAMSFKM-LNI-GAGDEVITCANTFIASVGAIVQAGATPV--LVDSENGYV 112
Query: 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL------LDEIARIVAKHPRLLVLSD 149
+DP+ +E+ +T+K++ ++ P + + +A+I KH L ++ D
Sbjct: 113 IDPEKIEAAITDKTKAIM------------PVHYTGNIADMPALAKIAKKH-NLHIVED 158
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} Length = 373 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 6e-05
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 30/122 (24%)
Query: 39 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 93
I NG A IL+ + GDEVI+P+ +++ A P+
Sbjct: 55 IGCGNGLDALHLILKG-YDI-GFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDI----R 108
Query: 94 NFLLDPKVLESKLTEKSRLLI------LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
+ +DP ++ES +TEK++ +I + +DEI RI K+ L ++
Sbjct: 109 TYNIDPSLIESAITEKTKAIIAVHLYGQPAD------------MDEIKRIAKKY-NLKLI 155
Query: 148 SD 149
D
Sbjct: 156 ED 157
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 9e-05
Identities = 40/264 (15%), Positives = 80/264 (30%), Gaps = 49/264 (18%)
Query: 43 NGAKQSILQAVLAVCSPGDEVIIP---------APFWVSYPEMARIADATPVILPTRISE 93
NG IL + + ++++ A I+ + T S
Sbjct: 79 NGTTSGILSVIQSFSQKKGDILMARNVHKSVLHA---------LDISQQEGHFIETHQSP 129
Query: 94 NFLLDPKVLESKLTEKS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152
KV S+L +L++L P N G + ++E+ + + + I
Sbjct: 130 LTNHYNKVNLSRLNNDGHKLVVLTYP-NYYGETFN---VEEVIKSLHQL--------NIP 177
Query: 153 EHIIYAPATHTSFASLPG---MWERTLTVNGFSK---AFAMTGWRL--GYIAGPKHFVAA 204
I A H P ++ V F K A M ++ +
Sbjct: 178 VLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEY 237
Query: 205 CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 264
+ Q+ +S + I AA + A R + +++ G +M
Sbjct: 238 LSYFQT--SSPSYLIMASLESAAQFYKTYDST----LFFAKRAQLIECLENK----GFEM 287
Query: 265 SEPQGAFYLFIDFSTYYGSEAEGF 288
+ L I + + G + + +
Sbjct: 288 LQVDDPLKLLIKYEGFTGHDIQNW 311
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Length = 390 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 20/120 (16%)
Query: 39 ILVSNG--AKQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMARIADATPV---ILPT 89
++VS+G A ++ A+ GDE+I+PA W + + I
Sbjct: 53 VMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDI- 111
Query: 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
+D + L+ +T+ ++ ++ N G P N DEI +I+ +++L D
Sbjct: 112 ---NTLNIDIESLKEAVTDSTKAIL---TVNLLG--NPNN-FDEINKIIGGR-DIILLED 161
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* Length = 388 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 59 PGDEVIIPAPF-WVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSR 111
PG EVI+P F ++S + A+ A V + + LDP+ + + +T +++
Sbjct: 77 PGTEVIVP-AFTFISSSQAAQRLGAVTVPVDVDA----ATYNLDPEAVAAAVTPRTK 128
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} Length = 377 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 19 FVQQFVINLKENGLSYTPDQILVSNG--AKQSILQAVLAVCSPGDEVIIPAPF-WVSYPE 75
Q+F + V+N + +Q G ++P F + + P
Sbjct: 37 INQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQL-KKR-KKGKYALMP-SFTFPATPL 93
Query: 76 MARIADATPV---ILPTRISENFLLDPKVLESKL---TEKSRLLI 114
A P I +++ +D VL K+ E+ +++
Sbjct: 94 AAIWCGLEPYFIDISI----DDWYMDKTVLWDKIEELKEEVAIVV 134
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* Length = 375 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 17/96 (17%)
Query: 59 PGD--EVIIPAPFWVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSRLL 113
D E+I +V+ M + TPV I +D LE + E+++ +
Sbjct: 71 SADRNEIITTPISFVATANMLLESGYTPVFAGIKND-----GNIDELALEKLINERTKAI 125
Query: 114 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149
+ + G ++ + ++ KH L LSD
Sbjct: 126 V---SVDYAG--KSVE-VESVQKLCKKH-SLSFLSD 154
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 43/268 (16%), Positives = 90/268 (33%), Gaps = 46/268 (17%)
Query: 44 GAKQSILQAVLA----------VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 93
G +S+L A+ + +P E ++P ++ + A+ V P +
Sbjct: 168 GGTESLLLAMKTYRDWARATKGITAP--EAVVPVSAHAAFDKAAQYFGIKLVRTP--LDA 223
Query: 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153
++ D + +T + ++ +P P G V P + EIA + A+H + +
Sbjct: 224 DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDACLGG 280
Query: 154 HIIYAPATHTS-----FASLPGMWERTLTVNGFSKAFAMTG-----WRLGYIAGPKHFVA 203
I+ L G+ +++ + + G +R + +
Sbjct: 281 FILPWAERLGYPVPPFDFRLEGVT--SVSADTHKYGYGAKGTSVILYRRPDLL-HYQYFI 337
Query: 204 ACN---KIQSQFT-----SGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVK 254
A + + T GA S + A + +LG GY + + D L
Sbjct: 338 AADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYL------DATRRILQAADRLKA 391
Query: 255 SFGELEGVK-MSEPQGAFYLFIDFSTYY 281
+ +K + +P + D Y
Sbjct: 392 GVRAIPSLKILGDPLWVIAVASDELNIY 419
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* Length = 391 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 59 PGDEVIIPAPF-WVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSRLLI 114
PGDEVI+P +++ ATPV P F LD LE+ +T +++ ++
Sbjct: 95 PGDEVIVP-SLTYIASANSVTYCGATPVLVDNDP----RTFNLDAAKLEALITPRTKAIM 149
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 100.0 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.98 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.98 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.98 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.98 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.98 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.98 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.98 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.97 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.97 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.97 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.97 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.97 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.97 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.97 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.97 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.97 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.97 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.97 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.97 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.97 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.97 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.97 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.97 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.97 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.97 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.97 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.97 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.97 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.97 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.97 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.97 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.97 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.97 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.97 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.97 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.97 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.97 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.97 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.97 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.97 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.97 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.97 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.96 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.96 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.96 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.96 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.96 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.96 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.96 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.96 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.96 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.96 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.96 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.96 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.96 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.96 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.96 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.96 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.96 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.96 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.96 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.96 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.96 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.96 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.96 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.96 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.96 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.96 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.95 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.95 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.95 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.95 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.95 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.95 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.95 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.95 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.95 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.95 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.95 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.95 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.95 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.95 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.95 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.95 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.95 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.94 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.94 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.94 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.94 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.94 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.94 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.93 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.93 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.93 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.93 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.92 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.92 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.92 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.92 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.86 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.91 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.91 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.91 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.89 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.88 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.88 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.87 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.86 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.85 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.8 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.79 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.76 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.72 | |
| 2yvq_A | 143 | Carbamoyl-phosphate synthase; conserved hypothetic | 87.01 |
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-47 Score=346.07 Aligned_cols=320 Identities=40% Similarity=0.665 Sum_probs=281.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++..|..++| +.++++++ ++|..+++++|++|+|+++++..++.+++++||+|+++.|+|..+...++..|
T Consensus 63 ~y~~~~g~~~lr------~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g 136 (385)
T 1b5p_A 63 KYAPPAGIPELR------EALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAG 136 (385)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT
T ss_pred CCCCCCCCHHHH------HHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcC
Confidence 577778899999 99999999 78888889999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++++.++++.+|+++|+++++++++++++++||||||.++|.+++++|+++|+++ |+++|+||+|+.+.+++ .
T Consensus 137 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~-~ 214 (385)
T 1b5p_A 137 GVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEH-DFYLVSDEIYEHLLYEG-E 214 (385)
T ss_dssp CEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSS-C
T ss_pred CEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEEccchhcccCC-C
Confidence 999999997545678999999999988899999999999999999999999999999999 99999999999988766 4
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
..++..+.. +++++++|+||.+|++|+|+||+++++++++.+.......+.+++.+.+.++.++++......+++++.
T Consensus 215 ~~~~~~~~~--~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 292 (385)
T 1b5p_A 215 HFSPGRVAP--EHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMA 292 (385)
T ss_dssp CCCGGGTCT--TTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCHHHcCC--CCEEEEEechhhcCCcccceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455665533 789999999999999999999999999999998887666667889999999988886300014568888
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
++.++++++.+.+.|+++ |+.+..+++++++|+.++... .+..++.+.|.+ .||.+.||..|+.++++
T Consensus 293 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~l~~-~gv~v~~g~~f~~~~~i 360 (385)
T 1b5p_A 293 REAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIA----------PDEVRAAERLLE-AGVAVVPGTDFAAFGHV 360 (385)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTTC----------SSHHHHHHHHHH-TTEECEESGGGTCTTEE
T ss_pred HHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecCCCC----------CCHHHHHHHHHH-CCeEEecccccCCCCeE
Confidence 999999999999999988 888888889999999886310 167889999885 59999999988778899
Q ss_pred EEEeecCHHHHHHHHHHHHHHHh
Q 018665 322 RISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~~~ 344 (352)
||+++.+++++++++++|+++++
T Consensus 361 Ris~~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 361 RLSYATSEENLRKALERFARVLG 383 (385)
T ss_dssp EEECCSCHHHHHHHHHHGGGGC-
T ss_pred EEEecCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999988765
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-46 Score=339.54 Aligned_cols=325 Identities=43% Similarity=0.775 Sum_probs=286.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|++..|..++| +.++++++ .+|.++++++|++++|+++++..++.+++++||+|+++.|+|.++...++..
T Consensus 61 ~~y~~~~g~~~l~------~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~ 134 (388)
T 1j32_A 61 TRYGPAAGEPRLR------EAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLA 134 (388)
T ss_dssp CSCCCTTCCHHHH------HHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc
Confidence 3577788899999 99999999 7788778899999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++.+.+.++.+|+++|+++++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++.
T Consensus 135 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~ 213 (388)
T 1j32_A 135 EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEA-GLWVLSDEIYEKILYDDA 213 (388)
T ss_dssp TCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTC
T ss_pred CCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCC
Confidence 9999999987545677899999999988899999999999999999999999999999999 999999999999888765
Q ss_pred CccccccCCCC-CCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 161 THTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 161 ~~~~~~~~~~~-~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
...++..+..+ .++++++.|+||.+|++|+|+||+++++++++.+.......+.+++++.+.++.++++. ..++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~ 290 (388)
T 1j32_A 214 QHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN---SQDCVQ 290 (388)
T ss_dssp CCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS---CSHHHH
T ss_pred CCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---CcHHHH
Confidence 55555555321 45789999999999989999999999999999988877666778899999988888875 257788
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
+.+++++++++++.+.|++++++.+..+.+++++|++++... .+..++.+.|.+++||.+.+|..|+.++
T Consensus 291 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~gi~v~~g~~~~~~~ 360 (388)
T 1j32_A 291 EMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTG----------RSSLDFCSELLDQHQVATVPGAAFGADD 360 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGT----------CCHHHHHHHHHHHHCEECEEGGGGTCTT
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCCC----------CCHHHHHHHHHHhCCEEEeChhhhCCCC
Confidence 899999999999999999988999888888998998876410 1678899999875699999998887789
Q ss_pred eEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 320 CIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 320 ~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
++|++++.+++++++++++|+++++++
T Consensus 361 ~iRis~~~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 361 CIRLSYATDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp BEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 999999989999999999999998764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-46 Score=342.56 Aligned_cols=335 Identities=28% Similarity=0.508 Sum_probs=289.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|++..|..++| +.++++++ .+|+++++ ++|++++|+++++..++.+++++||+|+++.|+|.++...++.
T Consensus 61 ~~y~~~~g~~~lr------~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~ 134 (422)
T 3fvs_A 61 NQYTKTFGYPPLT------KILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMM 134 (422)
T ss_dssp GSCCCTTCCHHHH------HHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHH
Confidence 3688888999999 99999999 88988888 7999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccC----------CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEec
Q 018665 80 ADATPVILPTRI----------SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 80 ~g~~v~~i~~~~----------~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD 149 (352)
.|.+++.++++. ..++.+|+++|+++++++++++++++|+||||.++|.+++++|+++|+++ |+++|+|
T Consensus 135 ~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~D 213 (422)
T 3fvs_A 135 AGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQH-DVVCITD 213 (422)
T ss_dssp TTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEE
T ss_pred cCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEE
Confidence 999999999875 23567899999999998999999999999999999999999999999999 9999999
Q ss_pred ccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhc
Q 018665 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALG 229 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 229 (352)
|+|+++.+++....++..+...+++++++.|+||.+|++|+|+||+++++++++.+.......+++++++.+.++.++++
T Consensus 214 e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 293 (422)
T 3fvs_A 214 EVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFE 293 (422)
T ss_dssp CTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred ccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHh
Confidence 99999988887677777776656899999999999998999999999999999998887776677899999999999987
Q ss_pred c-----cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcc--cCCCCCCChHHHHHHHH
Q 018665 230 L-----GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA--EGFGKIENSESLCRYLL 302 (352)
Q Consensus 230 ~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 302 (352)
. .. ..+++++++++++++++.+.+.|+++ |+.+..+.+++++|++++....... .+........++++.++
T Consensus 294 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 371 (422)
T 3fvs_A 294 REQLLFRQ-PSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMI 371 (422)
T ss_dssp HHHHTTTC-TTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHH
T ss_pred hccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHH
Confidence 4 11 25778899999999999999999998 8998889999999998865210000 00000000568888888
Q ss_pred HccCEEeccCCCCCC-------CCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 303 DKAQVALVPGDAFGD-------DTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 303 ~~~gi~i~~g~~~~~-------~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
+++||.+.||+.|+. .+++|++++.+++++++++++|++++++
T Consensus 372 ~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 372 KNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred HhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 777999999998853 6899999999999999999999999875
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=334.62 Aligned_cols=324 Identities=40% Similarity=0.651 Sum_probs=283.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCc-EEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~-i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|++..|..++| +.+++++. .+|+++++++ |++++|+++++..++.+++++||+|+++.|+|+++...++..
T Consensus 58 ~y~~~~g~~~l~------~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~ 131 (389)
T 1gd9_A 58 HYGPNIGLLELR------EAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILA 131 (389)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHH
T ss_pred CCCCCCCcHHHH------HHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHC
Confidence 577777899999 99999998 6787778889 999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++.+.++.+|+++|+++++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++.
T Consensus 132 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~ 210 (389)
T 1gd9_A 132 GGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYDDA 210 (389)
T ss_dssp TCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTC
T ss_pred CCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEehhhhhcccCCC
Confidence 9999999987544577899999999988899999999999999999999999999999999 999999999999887665
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChH--HH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE--VV 238 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 238 (352)
...++..+....++++++.|+||.+|++|+|+||+++++++++.+.......+++++++.+.++.++++.. .. ++
T Consensus 211 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~ 287 (389)
T 1gd9_A 211 RHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDE---RSWKAV 287 (389)
T ss_dssp CCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCH---HHHHHH
T ss_pred CCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC---CcchHH
Confidence 44556555433578899999999999899999999999999999888776667789999999999999852 33 78
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC-
Q 018665 239 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD- 317 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~- 317 (352)
++.+++++++++.+.+.|+++ |+++..+.+++++|++++... .+..++.+.|.+++||.+.||..|+.
T Consensus 288 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~gi~v~~g~~~~~~ 356 (389)
T 1gd9_A 288 EEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTG----------LTSKKFSELMLKEARVAVVPGSAFGKA 356 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGGT----------CCHHHHHHHHHHHTCEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEeccCCC----------CCHHHHHHHHHHhCCEEEeCchhhCCC
Confidence 888999999999999999988 888888888998999887410 16788999988556999999987763
Q ss_pred -CCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 318 -DTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 318 -~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
++++|++++.+++++++++++|++++++.+
T Consensus 357 ~~~~iRi~~~~~~~~i~~~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 357 GEGYVRISYATAYEKLEEAMDRMERVLKERK 387 (389)
T ss_dssp GTTBEEEECCSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence 679999999999999999999999997654
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=339.51 Aligned_cols=328 Identities=23% Similarity=0.360 Sum_probs=286.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+++.|..++| +.+++++++.+.++++++|++|+|+++++..++.++.++||+|+++.|+|.++...++..|.
T Consensus 91 ~y~~~~g~~~lr------~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~ 164 (427)
T 3dyd_A 91 GYAPSIGFLSSR------EEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGI 164 (427)
T ss_dssp SCCCTTCCHHHH------HHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTC
T ss_pred CCCCCCCcHHHH------HHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCC
Confidence 588889999999 99999998447778889999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++.+++.++.+|++++++.++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++...
T Consensus 165 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~-~~~~i~Deay~~~~~~g~~~ 243 (427)
T 3dyd_A 165 EVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQ-CVPILADEIYGDMVFSDCKY 243 (427)
T ss_dssp EEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCCEEEECTTTTCBCSSCCC
T ss_pred EEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEcCchhhccCCCcC
Confidence 99999998767788999999999998999999999999999999999999999999999 99999999999998877666
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcC-------hhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCCh
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-------KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
.++..+.. ..++++++|+||.++++|+|+||++++ +++++.+...... +++++++.+.++.++++.. ..
T Consensus 244 ~~~~~~~~-~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~--~~ 319 (427)
T 3dyd_A 244 EPLATLST-DVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRT--PG 319 (427)
T ss_dssp CCGGGGCS-SCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHS--CH
T ss_pred ccHHHhCC-CCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhc--CH
Confidence 66666554 356899999999998899999999986 4677777665433 4679999999999999842 26
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
+++++.+++++++++.+.+.|+++|++.++.+++|+++|+.++...- .. ..+..+++++|++++||.+.||..|
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~--~~----~~~~~~~~~~l~~~~gV~v~~g~~~ 393 (427)
T 3dyd_A 320 EFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHF--PE----FENDVEFTERLVAEQSVHCLPATCF 393 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGC--TT----CSSHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhc--CC----CCCHHHHHHHHHHHCCEEEECCccc
Confidence 77889999999999999999999889998889999999988763100 00 0167789999876669999999999
Q ss_pred CCCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 316 GDDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 316 ~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
+.++++||+++.+++++++++++|++++++++
T Consensus 394 ~~~~~iRis~~~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 394 EYPNFIRVVITVPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp TCTTEEEEESCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence 88999999999899999999999999998765
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=337.19 Aligned_cols=325 Identities=23% Similarity=0.337 Sum_probs=288.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|++..|..+++ +.+++++. .+|.++++ ++|++++|+++++..++.+++++||+|+++.|+|.++...++..
T Consensus 73 ~y~~~~g~~~l~------~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~ 146 (407)
T 3nra_A 73 AYTEYRGDLGIR------DLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFF 146 (407)
T ss_dssp HSCCTTCCHHHH------HHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHT
T ss_pred CcCCCCCCHHHH------HHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHc
Confidence 477888999999 99999998 77877766 79999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccC----CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc
Q 018665 81 DATPVILPTRI----SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 156 (352)
Q Consensus 81 g~~v~~i~~~~----~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~ 156 (352)
|.+++.++++. +.++.+|++.|+++++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+.+.
T Consensus 147 g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~Dea~~~~~ 225 (407)
T 3nra_A 147 EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARY-GATVIADQLYSRLR 225 (407)
T ss_dssp TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSB
T ss_pred CCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHc-CCEEEEEccccccc
Confidence 99999999842 25667999999999988999999999999999999999999999999999 99999999999988
Q ss_pred cCCCCccccccCC-CCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCCh
Q 018665 157 YAPATHTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 157 ~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
+++....++..+. ..+++++++.|+||.+|++|+|+||+++++++++.+......++.+++++.+.++.++++. ..
T Consensus 226 ~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~ 302 (407)
T 3nra_A 226 YAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE---AP 302 (407)
T ss_dssp CTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC---CT
T ss_pred cCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhc---cc
Confidence 8876666666664 4468899999999999999999999999999999998887777788889888888888875 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
+++++.+++++++++.+.+.|++++++.+..+.+++++|+.++... .+..++.+.|.+++||.+.+|..|
T Consensus 303 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~gi~v~~g~~~ 372 (407)
T 3nra_A 303 GWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA----------VAPAEFVKILRLQAGVVVTPGTEF 372 (407)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS----------SCHHHHHHHHHHHHCEECEEGGGT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCC----------CCHHHHHHHHHHhCCEEEeCchhh
Confidence 7788889999999999999999988999988888899999987621 178899999987679999999888
Q ss_pred C--CCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 316 G--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 316 ~--~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
+ .++++|++++.+++++++++++|++++++++
T Consensus 373 ~~~~~~~iRis~~~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 373 SPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp CTTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence 6 4689999999999999999999999998765
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=337.38 Aligned_cols=327 Identities=25% Similarity=0.411 Sum_probs=282.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|++..+..++| +.+++++. ++|.++++ ++|++++|+++++..++.+++++||+|+++.|+|.++...++..
T Consensus 70 ~y~~~~g~~~l~------~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~ 143 (412)
T 2x5d_A 70 GYSTSRGIPRLR------RAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIA 143 (412)
T ss_dssp ---CTTCCHHHH------HHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHH
T ss_pred CCCCCCCcHHHH------HHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc
Confidence 477788999999 99999998 77877777 79999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++.+.++.+|+++|++++++++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++.
T Consensus 144 g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~ 222 (412)
T 2x5d_A 144 GAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQY-DVMVVHDLAYADIVYDGW 222 (412)
T ss_dssp TCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTC
T ss_pred CCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCC
Confidence 9999999987544666899999999988899999999999999999999999999999999 999999999999888765
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
...++..+....++++++.|+||.+|++|+|+||+++++++++.+.......+++++++.+.++.++++. ..+++++
T Consensus 223 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~ 299 (412)
T 2x5d_A 223 KAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG---DQQCVRD 299 (412)
T ss_dssp CCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHS---CSHHHHH
T ss_pred CCCChhhccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhC---CHHHHHH
Confidence 5556666543357889999999999989999999999999999988776666678999999999999986 2577889
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--C
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D 318 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~ 318 (352)
++++++++++.+.+.|+++ ++.+..+.+|+++|++++...+ ..+..++.+.|++++||.+.||..|.. +
T Consensus 300 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~ 370 (412)
T 2x5d_A 300 IARQYQQRRDVLVKGLREA-GWMVENPKASMYVWAKIPEPYA--------HLGSLEFAKKLLQDAKVSVSPGIGFGDYGD 370 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCCCCCSBSSEEEEECCTTTG--------GGCHHHHHHHHHHHHCEECEEGGGGCGGGT
T ss_pred HHHHHHHHHHHHHHHHHHC-CCEecCCCeeeEEEEEcCCccC--------CCCHHHHHHHHHHHCCEEEeCchhhCCCCC
Confidence 9999999999999999988 8888888889899999874310 014678999987656999999988753 5
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 319 TCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+++||+++.+++++++++++|+++++++..
T Consensus 371 ~~iRis~~~~~~~l~~~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 371 DHVRFALIENRDRLRQAVRGIKAMFRADGL 400 (412)
T ss_dssp TEEEEECCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999999987654
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=337.29 Aligned_cols=334 Identities=24% Similarity=0.462 Sum_probs=283.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|++..|..+++ +.+++++. ++|.+++++ +|++++|+++++..++.+++++||+|+++.|+|+++...++..
T Consensus 72 ~y~~~~g~~~l~------~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~ 145 (429)
T 1yiz_A 72 QYTRGFGHPRLV------QALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAA 145 (429)
T ss_dssp SCCCSSCCHHHH------HHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT
T ss_pred CCCCCCCcHHHH------HHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc
Confidence 577777899999 99999998 678777888 9999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCC--------CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 81 DATPVILPTRISE--------NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 81 g~~v~~i~~~~~~--------~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
|.+++.++++.+. ++.+|+++|++++++++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|
T Consensus 146 g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~ 224 (429)
T 1yiz_A 146 GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVY 224 (429)
T ss_dssp TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTT
T ss_pred CCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEeccc
Confidence 9999999987543 567899999999988999999999999999999999999999999999 9999999999
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcc--
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-- 230 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 230 (352)
+++.+++....++..+....++++++.|+||.+|++|+|+||+++++++++.+.......+++.+++.+.++.++++.
T Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~ 304 (429)
T 1yiz_A 225 EHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETEL 304 (429)
T ss_dssp TTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhccc
Confidence 998887765556655543467899999999999989999999999999999888776666778999999999999986
Q ss_pred ---cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCc-ccCCCCCCChHHHHHHHHHccC
Q 018665 231 ---GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE-AEGFGKIENSESLCRYLLDKAQ 306 (352)
Q Consensus 231 ---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~g 306 (352)
... .+++++.++.++++++.+.+.|+++ ++.+..+.+|+++|+++++..... .....+..+..++.++|++++|
T Consensus 305 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g 382 (429)
T 1yiz_A 305 KRLKSP-ECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVG 382 (429)
T ss_dssp TTTTST-TSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTS
T ss_pred ccccch-HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCC
Confidence 322 5678899999999999999999988 888888888999999987531000 0000000146688888886569
Q ss_pred EEeccCCCCCC-------CCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 307 VALVPGDAFGD-------DTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 307 i~i~~g~~~~~-------~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
|.+.||..|+. ++++||+++.+++++++++++|++++++
T Consensus 383 v~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 383 LQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGS 428 (429)
T ss_dssp EECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHHHHHHHHHSCC
T ss_pred EEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHHHHHHHHhccC
Confidence 99999987752 6799999999999999999999998754
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=337.00 Aligned_cols=320 Identities=23% Similarity=0.402 Sum_probs=281.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|++..+..++| +.+++++. ++|.++++ ++|++++|+++++..++.+++++||+|+++.|+|.++...++..
T Consensus 80 ~y~~~~g~~~lr------~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~ 153 (404)
T 2o1b_A 80 KYGAFHGKEAFK------QAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLA 153 (404)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHT
T ss_pred CCCCCCCCHHHH------HHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHC
Confidence 477778999999 99999998 66877776 79999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++. +++.+|+++|++++++++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++
T Consensus 154 g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g- 230 (404)
T 2o1b_A 154 DGKPVPLNLEP-PHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGT-DTKIVHDFAYGAFGFDA- 230 (404)
T ss_dssp TCEEEEEECCT-TTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTS-SCEEEEECTTTTCBSSS-
T ss_pred CCEEEEeccCc-ccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCC-
Confidence 99999999875 4566899999998877889999999999999999999999999999999 99999999999987765
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
...++..+...+++++++.|+||.+|++|+|+||+++++++++.+......++++++.+.+.++.++++. ..+++++
T Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~ 307 (404)
T 2o1b_A 231 KNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNH---YDDFLEE 307 (404)
T ss_dssp CCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---CHHHHHH
T ss_pred CCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc---CHHHHHH
Confidence 3345555433346889999999999889999999999999999988877666678999999999999986 2678889
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--C
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D 318 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~ 318 (352)
.++.++++++.+.+.|+++ ++.+..+.+|+++|++++... +..++.+.|++++||.+.||..|+. +
T Consensus 308 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~f~~~~~ 375 (404)
T 2o1b_A 308 QSNVFKTRRDRFEAMLAKA-DLPFVHAKGGIYVWLETPPGY-----------DSEQFEQFLVQEKSILVAPGKPFGENGN 375 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCEECCCBSSEEEEECCTTC-----------CHHHHHHHHHHHHCEECEESGGGCGGGT
T ss_pred HHHHHHHHHHHHHHHHHhc-CCeecCCCcceEEEEeCCCCC-----------CHHHHHHHHHHHCCEEEeCchhhCcCCC
Confidence 9999999999999999988 888888888999999987532 6788999988656999999988764 6
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 319 TCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
+++||+++.+++++++++++|+++++++
T Consensus 376 ~~iRis~~~~~e~l~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 376 RYVRISLALDDQKLDEAAIRLTELAYLY 403 (404)
T ss_dssp TEEEEECCSCTTHHHHHHHHHHGGGGGG
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Confidence 8999999998899999999999998764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=334.00 Aligned_cols=319 Identities=26% Similarity=0.432 Sum_probs=276.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++..|..++| +.++++++ ++|+++++++|++|+|+++++..++.+++++||+|+++.|+|.++...++..|
T Consensus 63 ~y~~~~g~~~lr------~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g 136 (391)
T 3h14_A 63 GYTVALGLPALR------QRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALG 136 (391)
T ss_dssp ------CCHHHH------HHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTT
T ss_pred CCCCCCChHHHH------HHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcC
Confidence 577788899999 99999999 88988899999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++++.++++.+|+++|++. ++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++.
T Consensus 137 ~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~- 211 (391)
T 3h14_A 137 LVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQ-GASFISDEIYHGIEYEAK- 211 (391)
T ss_dssp CEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSC-
T ss_pred CEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEECcchhcccCCC-
Confidence 999999998766778899999887 789999999999999999999999999999999 999999999999887664
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
..+.... .+++++++|+||.+|++|+|+||+++++++++.+......++.+++.+.+.++.++++. .+++++.
T Consensus 212 ~~~~~~~---~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~ 284 (391)
T 3h14_A 212 AVTALEL---TDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDC----DAELQAN 284 (391)
T ss_dssp CCCGGGT---CSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTC----HHHHHHH
T ss_pred CcChhhc---CCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCC----hHHHHHH
Confidence 2333332 46889999999999989999999999999999998887777888999999999888873 7889999
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC---C
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---D 318 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~---~ 318 (352)
+++++++++.+.+.|++++...+..+.+++++|++++... .+..++.+.|++++||.+.||..|+. +
T Consensus 285 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~ 354 (391)
T 3h14_A 285 LDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLT----------DDSRAFAAEILEKAGVAVTPGLDFDPERGA 354 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTC----------SCHHHHHHHHHHHHCEECEEGGGTCTTTGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccC----------CCHHHHHHHHHHHCCEEEcCchhhCCCCCC
Confidence 9999999999999999884444457788899999987521 17889999988777999999998876 5
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHHHhhhCCC
Q 018665 319 TCIRISYAASLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
+++|++++.+++++++++++|++++++....
T Consensus 355 ~~iRis~~~~~~~i~~~l~~l~~~~~~~~~~ 385 (391)
T 3h14_A 355 GTLRFSYARATADIEEGLDRLEAFMQARGEG 385 (391)
T ss_dssp GEEEEECCSCHHHHHHHHHHHHHHHHHC---
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHhccc
Confidence 7999999999999999999999999876554
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=343.24 Aligned_cols=329 Identities=24% Similarity=0.447 Sum_probs=280.2
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|++..|..++| +.+++++. .+|..+++++|++|+|+++++..++.+++++||+|+++.|+|..+...++..
T Consensus 89 ~~Y~~~~g~~~lr------~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~ 162 (447)
T 3b46_A 89 NQYSPTRGRPSLI------NSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELC 162 (447)
T ss_dssp GSCCCTTCCHHHH------HHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHc
Confidence 4688888999999 99999998 6787778889999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCC----------CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecc
Q 018665 81 DATPVILPTRISE----------NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150 (352)
Q Consensus 81 g~~v~~i~~~~~~----------~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~ 150 (352)
|.+++.++++.+. ++.+|+++|++++++++++|++++|+||||.++|.+++++|+++|+++ |+++|+||
T Consensus 163 g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~-~~~li~De 241 (447)
T 3b46_A 163 GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKH-NVVIISDE 241 (447)
T ss_dssp TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEC
T ss_pred CCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CcEEEEec
Confidence 9999999987542 577999999999988999999999999999999999999999999999 99999999
Q ss_pred cccccccCCCCccccccC-CCCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHh
Q 018665 151 IYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAAL 228 (352)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 228 (352)
+|+++.+++ ...++..+ ...+++++++.|+||.+|++|+|+||+++ ++++++.+.......+++++++.+.++.+++
T Consensus 242 ~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL 320 (447)
T 3b46_A 242 VYEHLYFTD-SFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSI 320 (447)
T ss_dssp TTTTCBCSS-CCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred cchhcccCC-CCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Confidence 999988876 33455444 22257889999999999989999999999 9999998887666666788999999999999
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCC------CCCCChHHHHHHHH
Q 018665 229 GLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF------GKIENSESLCRYLL 302 (352)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~ 302 (352)
+.... .++++++++.++++++.+.+.|+++ |+.+..+.+|+++|++++.... ..++ ....+..+++++|.
T Consensus 321 ~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~l~ 396 (447)
T 3b46_A 321 NDALK-IGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVDFSKVKI--PEDYPYPEEILNKGKDFRISHWLI 396 (447)
T ss_dssp HHHHH-HTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECTTCCC--CTTCCCCGGGSSSCHHHHHHHHHH
T ss_pred hCCcc-hHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecccccC--ccccccccccccCCCHHHHHHHHH
Confidence 86211 4668889999999999999999988 8888888899999999875200 0000 00014668888888
Q ss_pred HccCEEeccCCCCCC-------CCeEEEEeecCHHHHHHHHHHHHHH
Q 018665 303 DKAQVALVPGDAFGD-------DTCIRISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 303 ~~~gi~i~~g~~~~~-------~~~iRi~~~~~~~~l~~~~~~l~~~ 342 (352)
+++||.+.||+.|+. ++++|++++.+++++++++++|++.
T Consensus 397 ~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 397 NELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKLL 443 (447)
T ss_dssp HHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHHHHHHHHHGGGG
T ss_pred HhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 667999999987753 5799999999999999999999873
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=339.16 Aligned_cols=319 Identities=19% Similarity=0.374 Sum_probs=280.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|+++.|..++| +.+++++. ++|.+ ++++|++|+|+++++..++.+++++||+|+++.|+|.++...++..|
T Consensus 113 ~Y~~~~g~~~lr------~~ia~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g 185 (448)
T 3aow_A 113 QYGTTKGFTPLR------ETLMKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYE 185 (448)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTC
T ss_pred CCCCCCCcHHHH------HHHHHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcC
Confidence 588888999999 99999996 77876 78999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhcc----C--CeeEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLT----E--KSRLL-ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~----~--~~~~i-~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
.+++.++++.+ ++|+++|+++++ + ++++| ++++|+||||.++|.+++++|+++|+++ |+++|+||+|++
T Consensus 186 ~~~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~-~~~lI~De~y~~ 261 (448)
T 3aow_A 186 PQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEY-DFIVVEDDPYGE 261 (448)
T ss_dssp CEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECSCTT
T ss_pred CEEEEeccCCC---CCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHc-CCEEEEECCCcc
Confidence 99999998742 389999999987 5 78887 4689999999999999999999999999 999999999999
Q ss_pred cccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCC
Q 018665 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
+.+++....++..+.. .++++++.|+||.++ +|+|+||+++++++++.+......++.++|++.|.++.++++....
T Consensus 262 ~~~~g~~~~~~~~~~~-~~~vi~~~S~SK~~~-~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~- 338 (448)
T 3aow_A 262 LRYSGNPEKKIKALDN-EGRVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL- 338 (448)
T ss_dssp CBCSSCCCCCTGGGCT-TSCEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-
T ss_pred ccCCCCCCcCHHhcCC-CCCEEEEccchhhcc-ccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCH-
Confidence 9887765566666643 478999999999999 9999999999999999988776666677899999999999986311
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcc-cC-CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGE-LE-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~-~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
.++++++++.++++++.+.+.|++ +| ++.+..|.+|+++|+++++.. +..++.+.|.++ ||.+.||
T Consensus 339 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~-----------~~~~l~~~l~~~-gV~v~pg 406 (448)
T 3aow_A 339 EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGI-----------DSKKMLERAIKK-GVAYVPG 406 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTC-----------CHHHHHHHHHHT-TEECEEG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCC-----------CHHHHHHHHHHC-CcEEEcc
Confidence 567888899999999999999987 46 688888889999999998642 788899999987 9999999
Q ss_pred CCCC----CCCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 313 DAFG----DDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 313 ~~~~----~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
..|+ .++++||+++. +++++++++++|+++++++.
T Consensus 407 ~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 407 EAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp GGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8874 35799999998 78999999999999997653
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=332.71 Aligned_cols=319 Identities=27% Similarity=0.474 Sum_probs=278.0
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|++..|..++| +.+++++. .+|.+++++ +|++++|+++++..++.+++++||+|+++.|+|+++...++.
T Consensus 61 ~~y~~~~g~~~l~------~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~ 134 (386)
T 1u08_A 61 NQYAPMTGVQALR------EAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIAL 134 (386)
T ss_dssp CSCCCTTCCHHHH------HHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH
T ss_pred cCCCCCCCCHHHH------HHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHH
Confidence 4577778899999 99999998 678777888 999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.++++.+ ++.+|+++|+++++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++
T Consensus 135 ~g~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g 212 (386)
T 1u08_A 135 SGGIVKRMALQPP-HFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGH-EIFVISDEVYEHINFSQ 212 (386)
T ss_dssp TTCEEEEEECCTT-TCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTS-CCEEEEECTTTTCBCCS
T ss_pred cCCEEEEeecCcc-cCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEEccccccccCC
Confidence 9999999998643 567999999999988999999999999999999999999999999999 99999999999988876
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....++..+....++++++.|+||.+|++|+|+||+++++++++.+.......+++++++.+.++.++++.. .++++
T Consensus 213 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~ 289 (386)
T 1u08_A 213 QGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYL 289 (386)
T ss_dssp SCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHH
T ss_pred CCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC---cHHHH
Confidence 545555544322478899999999999899999999999999998887766556778999999999999862 57788
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC---
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--- 316 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~--- 316 (352)
+++++++++++.+.+.|+++ |+.+..+.+|+++|+++++... .+..++.+.|.+++||.+.||..|.
T Consensus 290 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~~ 359 (386)
T 1u08_A 290 ALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVST---------LDDVEFCQWLTQEHGVAAIPLSVFCADP 359 (386)
T ss_dssp THHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTCC---------SCHHHHHHHHHHHSCEECEEGGGGCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecCCCCC---------CCHHHHHHHHHHhCCEEEeCchHhCCCC
Confidence 99999999999999999998 8888888888999999875300 1678898988866699999998774
Q ss_pred -CCCeEEEEeecCHHHHHHHHHHHHH
Q 018665 317 -DDTCIRISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 317 -~~~~iRi~~~~~~~~l~~~~~~l~~ 341 (352)
.++++|++++.+++++++++++|++
T Consensus 360 ~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 360 FPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp CCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 3579999999999999999999864
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-45 Score=335.69 Aligned_cols=327 Identities=30% Similarity=0.509 Sum_probs=281.8
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|++..|..++| +.+++++. .+|.+++++ +|++++|+++++..++.+++++||+|+++.|+|.++...++.
T Consensus 56 ~~y~~~~g~~~l~------~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~ 129 (411)
T 2o0r_A 56 NQYPPGPGSAPLR------RAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAM 129 (411)
T ss_dssp CSCCCTTCCHHHH------HHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHH
Confidence 4677788899999 99999998 778877887 999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCC-CCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 80 ADATPVILPTRIS-ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 80 ~g~~v~~i~~~~~-~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
.|.+++.++++.+ .++.+|+++|++++++++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.++
T Consensus 130 ~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~ 208 (411)
T 2o0r_A 130 AGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAA-NLVVITDEVYEHLVFD 208 (411)
T ss_dssp TTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCT
T ss_pred cCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEccccccccC
Confidence 9999999998753 3466899999999988999999999999999999999999999999999 9999999999998887
Q ss_pred CCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHH
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 238 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (352)
+....++..+....++++++.|+||.+|++|+|+||+++++++++.+.......+++.+++.+.++.++++. ..+++
T Consensus 209 g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~ 285 (411)
T 2o0r_A 209 HARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDT---EDAWV 285 (411)
T ss_dssp TCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH---CHHHH
T ss_pred CCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhC---ChHHH
Confidence 655556665544357899999999999989999999999999999888766655667888899999999875 26778
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC--
Q 018665 239 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-- 316 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-- 316 (352)
++++++++++++.+.+.|++. |+.+..+.+|+++|+++++..+ .+..++.++|++++||.+.||..|.
T Consensus 286 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~ 355 (411)
T 2o0r_A 286 AALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPRPLGY---------DDSTEFCAALPEKVGVAAIPMSAFCDP 355 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECGGGTC---------CCHHHHHHHHHHHHSEECEEGGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeEEEEEecCCCCC---------CCHHHHHHHHHHhCCEEEcChhhhCCC
Confidence 899999999999999999988 8888888889899999875200 1678899988865699999998773
Q ss_pred -----------CCCeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 317 -----------DDTCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 317 -----------~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.++++||+++.+++++++++++|++++++.+.
T Consensus 356 ~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~~~~~~ 398 (411)
T 2o0r_A 356 AAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPAT 398 (411)
T ss_dssp C--------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC----
T ss_pred ccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhccCc
Confidence 24689999988999999999999998877655
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-45 Score=331.48 Aligned_cols=315 Identities=36% Similarity=0.649 Sum_probs=277.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++..+..++| +.++++++ ++|+++++++|++++|+++++..++.+++++||+|+++.|+|.++...++..|
T Consensus 73 ~y~~~~g~~~lr------~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g 146 (389)
T 1o4s_A 73 KYTDPRGIYELR------EGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAG 146 (389)
T ss_dssp CCCCTTCCHHHH------HHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT
T ss_pred CCCCCCCCHHHH------HHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC
Confidence 577778899999 99999998 67887788999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++++.+.++.+|+++|+++++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++ .
T Consensus 147 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~g-~ 224 (389)
T 1o4s_A 147 GTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKR-NFYIISDEVYDSLVYTD-E 224 (389)
T ss_dssp CEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBCSS-C
T ss_pred CEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEccccccccCC-C
Confidence 999999987544677899999999988899999999999999999999999999999999 99999999999987765 2
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
..++..+....++++++.|+||.+|++|+|+||+++++++++.+......++++++++.+.++.++++.+ ++++
T Consensus 225 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~ 298 (389)
T 1o4s_A 225 FTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYM 298 (389)
T ss_dssp CCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHH
T ss_pred CCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHH
Confidence 3445444333578899999999999899999999999999998887766666778999999998888752 6777
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
+++++++++.+.+.|+++ |+.+..+.+++++|++++ . +..++.+.|+++.||.+.||..|+.++++
T Consensus 299 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~ 364 (389)
T 1o4s_A 299 VQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVR-G------------DDVKFCERLLEEKKVALVPGSAFLKPGFV 364 (389)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECS-S------------CHHHHHHHHHHHHCEECEEGGGGTCTTEE
T ss_pred HHHHHHHHHHHHHHHHhc-CCeeecCCcceEEEEeCC-C------------CHHHHHHHHHHHCCEEEeCchhcCCCCeE
Confidence 888899999999999988 888888888999999887 2 78889999884559999999888777899
Q ss_pred EEEeecCHHHHHHHHHHHHHHHhh
Q 018665 322 RISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
|++++.+++++++++++|++++++
T Consensus 365 Ris~~~~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 365 RLSFATSIERLTEALDRIEDFLNS 388 (389)
T ss_dssp EEECCSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998753
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-45 Score=331.81 Aligned_cols=316 Identities=21% Similarity=0.338 Sum_probs=277.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCC-CCCC-cEEEeCChHHHHHHHHHHhcCCC-----CEEEecCCCCCCh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLS-YTPD-QILVSNGAKQSILQAVLAVCSPG-----DEVIIPAPFWVSY 73 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~-~~~~-~i~~~~g~~~a~~~~~~~l~~~~-----~~vl~~~~~~~~~ 73 (352)
..|++..|..++| +.+++++. ++|++ ++++ +|++|+|+++++..++.+++++| |+|+++.|+|.++
T Consensus 60 ~~y~~~~g~~~lr------~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~ 133 (396)
T 3jtx_A 60 EKYPLTAGLPELR------QACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIY 133 (396)
T ss_dssp GSCCCTTCCHHHH------HHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHH
T ss_pred cCCCCCCCcHHHH------HHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhH
Confidence 4688888899999 99999998 78877 7788 99999999999999999999886 7999999999999
Q ss_pred HHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc
Q 018665 74 PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153 (352)
Q Consensus 74 ~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~ 153 (352)
...++..|.+++.++++ ++++.+|+++|+++++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+
T Consensus 134 ~~~~~~~g~~~~~v~~~-~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~ 211 (396)
T 3jtx_A 134 EGATLLGGGEIHFANCP-APSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKY-GFIIASDECYS 211 (396)
T ss_dssp HHHHHHTTCEEEEEECC-TTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-CCEEEEECTTT
T ss_pred HHHHHHcCCEEEEeecC-CCCCccCHHHHHHhhccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEcccc
Confidence 99999999999999994 45677899999999988999999999999999999999999999999999 99999999999
Q ss_pred ccccCCCCcccccc----CCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhc
Q 018665 154 HIIYAPATHTSFAS----LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALG 229 (352)
Q Consensus 154 ~~~~~~~~~~~~~~----~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 229 (352)
++.+++..+.+... +...+++++++.|+||.++++|+|+||+++++++++.+.......+++++++.+.++.++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 291 (396)
T 3jtx_A 212 EIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWD 291 (396)
T ss_dssp TCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred ccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhC
Confidence 98877643333221 12235788999999999988999999999999999999887777778899999999999998
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 230 LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
. .+++++.++.++++++.+.+.|+++ +.+..+.+|+++|++++.. +..++.+.|++++||.+
T Consensus 292 ~----~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~gi~v 353 (396)
T 3jtx_A 292 D----EQHVIDNRRLYQEKFERVIPILQQV--FDVKLPDASFYIWLKVPDG------------DDLAFARNLWQKAAIQV 353 (396)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHHHHTTT--SCCCCCSSSSEEEEECTTS------------CHHHHHHHHHHHHCEEC
T ss_pred C----HHHHHHHHHHHHHHHHHHHHHHHhc--CCccCCCeeEEEEEECCCC------------CHHHHHHHHHHHCCEEE
Confidence 5 6788999999999999999999875 4566788899999999863 78899999977679999
Q ss_pred ccCCCCCC--------CCeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 310 VPGDAFGD--------DTCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 310 ~~g~~~~~--------~~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
.||..|+. ++++||+++.+++++++++++|++++
T Consensus 354 ~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 354 LPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp EEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred eCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 99988764 47999999999999999999999875
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=332.31 Aligned_cols=330 Identities=30% Similarity=0.531 Sum_probs=284.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|++..|..++| +.++++++ .+++++++ ++|++++|+++++..++.+++++||+|+++.|+|..+...++..
T Consensus 56 ~y~~~~g~~~l~------~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~ 129 (410)
T 3e2y_A 56 QYTRGFGHPALV------KALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMA 129 (410)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT
T ss_pred CCCCCCChHHHH------HHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc
Confidence 577788899999 99999999 88888888 89999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccC---------CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 81 DATPVILPTRI---------SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 81 g~~v~~i~~~~---------~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
|.+++.++++. +.++.+|++++++++++++++|++++|+||||.+++.+++++|+++|+++ |+++|+||+
T Consensus 130 g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~ 208 (410)
T 3e2y_A 130 GAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKH-DTLCISDEV 208 (410)
T ss_dssp TCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECT
T ss_pred CCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEEhh
Confidence 99999999863 24566899999999998999999999999999999999999999999999 999999999
Q ss_pred ccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcc-
Q 018665 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL- 230 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 230 (352)
|+++.+++....++..+...+++++++.|+||.+|++|+|+||+++++++++.+.......+++++++.+.++.++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 288 (410)
T 3e2y_A 209 YEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWID 288 (410)
T ss_dssp TTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhh
Confidence 9999888776667777766678999999999999999999999999999999998877766778999999999999873
Q ss_pred ----cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccC
Q 018665 231 ----GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 306 (352)
Q Consensus 231 ----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 306 (352)
.. ...+++++++.++++++.+.+.|+++ |+.+..+.+++++|++++..............+..++++++++++|
T Consensus 289 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 366 (410)
T 3e2y_A 289 IKRMDD-PECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKK 366 (410)
T ss_dssp HTTTTS-TTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHS
T ss_pred hccccc-hHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcC
Confidence 11 25778899999999999999999998 9998889999999998865321000000000023478887776779
Q ss_pred EEeccCCCCCC-------CCeEEEEeecCHHHHHHHHHHHHH
Q 018665 307 VALVPGDAFGD-------DTCIRISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 307 i~i~~g~~~~~-------~~~iRi~~~~~~~~l~~~~~~l~~ 341 (352)
|.+.||+.|+. .+++||+++.+++++++++++|++
T Consensus 367 v~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 367 LTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp EECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHHHHT
T ss_pred EEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHh
Confidence 99999998863 479999999999999999999975
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-45 Score=329.91 Aligned_cols=314 Identities=25% Similarity=0.413 Sum_probs=274.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|++..+..++| +.+++++. ++|.+++++ +|++++|+++++..++.++.++||+|+++.|+|.++...++..
T Consensus 58 ~y~~~~~~~~l~------~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~ 131 (376)
T 2dou_A 58 GYCLKSCTLPFL------EEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVA 131 (376)
T ss_dssp SCCCHHHHHHHH------HHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHT
T ss_pred CCCCCCCCHHHH------HHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHc
Confidence 465556788999 99999998 668777776 9999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.+++ ++++.+|+++++++++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++.
T Consensus 132 g~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~ 208 (376)
T 2dou_A 132 SLRTFLIPL--REDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKH-GLWLIHDNPYVDQVYEGE 208 (376)
T ss_dssp TCEEEEECB--CTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGBSSSC
T ss_pred CCEEEEeeC--CCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCC
Confidence 999999998 35667899999998887899999999999999999999999999999999 999999999999887652
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
..++.......++++++.|+||.+|++|+|+||+++++++++.+......++.+++++.+.++.++++. ..+++++
T Consensus 209 -~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~ 284 (376)
T 2dou_A 209 -APSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKT---PKEVVRG 284 (376)
T ss_dssp -CCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTS---CHHHHHH
T ss_pred -CCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhC---cHHHHHH
Confidence 334444433357889999999999889999999999999999998877666777899999999999976 2678889
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--C
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D 318 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~ 318 (352)
.++.++++++.+.+.|+++ +.+..+.+|+++|+++++.. +..++.+.|.++ ||.+.||..|+. +
T Consensus 285 ~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~-gi~v~~g~~f~~~~~ 350 (376)
T 2dou_A 285 YARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLPEGV-----------DDLEFGLRLVER-GVALAPGRGFGPGGK 350 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECCTTC-----------CHHHHHHHHHHT-TEECEEGGGGCGGGT
T ss_pred HHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECCCCC-----------CHHHHHHHHHHC-CEEEcCchhhCCCCC
Confidence 9999999999999999986 77777788999999987532 678899999987 999999988763 6
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 319 TCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
+++||+++.+++++++++++|++++
T Consensus 351 ~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 351 GFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp TEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHh
Confidence 8999999989999999999998875
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=332.19 Aligned_cols=319 Identities=18% Similarity=0.271 Sum_probs=274.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCC-------CCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYT-------PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP 74 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~-------~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~ 74 (352)
.|++..|.+++| +.+++++. .+|.+.. +++|++|+|+++++..++.+++++||+|+++.|+|.++.
T Consensus 73 ~Y~~~~G~~~lr------~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~ 146 (425)
T 2r2n_A 73 QYSPSAGIPELL------SWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTL 146 (425)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHH
T ss_pred CCCCCCCCHHHH------HHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH
Confidence 589999999999 99999998 7787763 379999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEecccCCCCcccCHHHHHhhcc------------CCeeEEEE-cCCCCCcccCCCHHHHHHHHHHHHhC
Q 018665 75 EMARIADATPVILPTRISENFLLDPKVLESKLT------------EKSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKH 141 (352)
Q Consensus 75 ~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~------------~~~~~i~i-~~p~nptG~~~~~~~l~~l~~~~~~~ 141 (352)
..++..|.+++.++++.+ ++|+++|+++++ ++++++++ ++||||||.++|.+++++|+++|+++
T Consensus 147 ~~~~~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~ 223 (425)
T 2r2n_A 147 QSLHPLGCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKY 223 (425)
T ss_dssp HHHGGGTCEEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCEEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc
Confidence 999999999999998642 489999999886 35788766 68999999999999999999999999
Q ss_pred CCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHH
Q 018665 142 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQ 221 (352)
Q Consensus 142 ~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
|+++|+||+|+++.+++....++..+.. .+++++++|+||.++ +|+|+||+++++++++.+.......+++++++.|
T Consensus 224 -~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q 300 (425)
T 2r2n_A 224 -DFLIIEDDPYYFLQFNKFRVPTFLSMDV-DGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTLHPSTFNQ 300 (425)
T ss_dssp -TCEEEEECTTGGGBSSSSCCCCTGGGCT-TSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHH
T ss_pred -CCEEEEECCcccccCCCCCCCCccccCC-CCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999998887766667666653 578999999999999 9999999999999999998877766778999999
Q ss_pred HHHHHHhcc---cCCChHHHHHHHHHHHHHHHHHHHHhcc-cCCc-eecCCCCceEEEeecCCccCCcccCCCCCCChHH
Q 018665 222 KAGVAALGL---GYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 296 (352)
Q Consensus 222 ~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
.++.++++. +.. .++++++++.++++++.+.+.|++ ++++ .+..+.+|+++|+++++.. +..+
T Consensus 301 ~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~-----------~~~~ 368 (425)
T 2r2n_A 301 LMISQLLHEWGEEGF-MAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN-----------DVKE 368 (425)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCS-----------CCHH
T ss_pred HHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCC-----------CHHH
Confidence 999999874 111 356788888999999999999987 4776 5667889999999998642 4555
Q ss_pred -HHHHHHHccCEEeccCCCCCC-----CCeEEEEee-cCHHHHHHHHHHHHHHHhhh
Q 018665 297 -LCRYLLDKAQVALVPGDAFGD-----DTCIRISYA-ASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 297 -~~~~l~~~~gi~i~~g~~~~~-----~~~iRi~~~-~~~~~l~~~~~~l~~~~~~~ 346 (352)
+.+.|.+ .||.+.||..|+. .+++||+++ .+++++++++++|++++++.
T Consensus 369 ~~~~~l~~-~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 369 LIEEKAVK-MGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp HHHTHHHH-TTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 4666665 5999999988863 479999998 49999999999999998753
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-45 Score=330.96 Aligned_cols=316 Identities=21% Similarity=0.337 Sum_probs=279.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++ .+ .++| +.++++++ ++++++++++|++|+|+++++..++.++.++||+|+++.|+|.++...++..|
T Consensus 55 ~y~~-~~-~~lr------~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g 126 (377)
T 3fdb_A 55 GYQP-DG-SLLS------QATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQ 126 (377)
T ss_dssp SSCC-SS-CCHH------HHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHT
T ss_pred CCCC-CC-HHHH------HHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcC
Confidence 4666 66 8899 99999999 88988889999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC-C
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-A 160 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~-~ 160 (352)
.+++.++++.+ +|+++|+++++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++ .
T Consensus 127 ~~~~~~~~~~~----~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~ 201 (377)
T 3fdb_A 127 REGIFIDATGG----INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRY-DARVLVDEIHAPLVFDGQH 201 (377)
T ss_dssp CCEEEEECTTS----CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGBSSSCC
T ss_pred CEEEEccCCCC----CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEcccchhhcCCCC
Confidence 99999998743 899999999988899999999999999999999999999999999 99999999999988877 5
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
...++..+.. .++++++.|+||.+|++|+|+||+++ ++++++.+.......+.+++++.+.++.++++. ..++++
T Consensus 202 ~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~ 277 (377)
T 3fdb_A 202 TVAAGVSDTA-ASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRY---GTDFLN 277 (377)
T ss_dssp CCGGGSCHHH-HHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHH---CHHHHH
T ss_pred CcccHHHccC-CCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhc---cHHHHH
Confidence 5555554433 57889999999999889999999886 788889888776666678999999999999986 367789
Q ss_pred HHHHHHHHHHHHHHHHhcc-cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC-
Q 018665 240 KMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~- 317 (352)
+.+++++++++.+.+.|++ +|++.+..+.+++++|++++... ...++.+.|++++||.+.||..|+.
T Consensus 278 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~g~~~~~~ 346 (377)
T 3fdb_A 278 QEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTT-----------IEGSPSEFFIEKAKVAMNDGAWFGED 346 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSC-----------CCSCHHHHHHHHHCEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccC-----------CCHHHHHHHHHhCCEEecCChhccCC
Confidence 9999999999999999998 78999999999999999987631 2356777888777999999988875
Q ss_pred -CCeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 318 -DTCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 318 -~~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
++++|++++.+++++++++++|+++++++
T Consensus 347 ~~~~~Ris~~~~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 347 GTGFCRLNFATSREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp GTTEEEEECCSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 68999999999999999999999998764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=327.78 Aligned_cols=312 Identities=26% Similarity=0.454 Sum_probs=269.5
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCC-CEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~-~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|++..|..++| +.+++++. .+|+++++++|++|+|+++++..++.+++++| |+|+++.|+|.++...++..
T Consensus 71 ~y~~~~g~~~lr------~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~ 144 (398)
T 3ele_A 71 GYTSAQGDVETR------AAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAA 144 (398)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHT
T ss_pred CcCCCCCcHHHH------HHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHc
Confidence 588889999999 99999999 88888899999999999999999999999999 99999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh------CCCEEEEecccccc
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEH 154 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~------~~~~~livD~~~~~ 154 (352)
|.+++.++++. +++.+|+++|+++++++++++++++|+||||.++|.+++++|+++|++ + |+++|+||+|++
T Consensus 145 g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~-~~~li~De~~~~ 222 (398)
T 3ele_A 145 GARLVEVPADT-EHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGR-PIFIIADEPYRE 222 (398)
T ss_dssp TCEEEEECCCT-TTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTS-CCEEEEECTTTT
T ss_pred CCEEEEEecCC-cCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCC-CeEEEEeccccc
Confidence 99999999874 367899999999999899999999999999999999999999999999 9 999999999999
Q ss_pred cccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHH------HHHHhhhhc-cccCCChHHHHHHHHH
Q 018665 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV------AACNKIQSQ-FTSGASSISQKAGVAA 227 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~ 227 (352)
+.+++...+.... ..++++++.|+||.+|++|+|+||++++++++ +.+...... ...+++.+.+.++..+
T Consensus 223 ~~~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 299 (398)
T 3ele_A 223 IVYDGIKVPFVTK---YYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKC 299 (398)
T ss_dssp CBCTTCCCCCGGG---TCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTC
T ss_pred cccCCCCcCChHh---hcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHH
Confidence 8887643333322 24688999999999999999999999988743 333333222 2456777888888877
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
++.. . .++.++++++++.+.|+++ ++.+..+.+++++|+++++. +..++.+.|.+ .||
T Consensus 300 l~~~----~----~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~-~gi 357 (398)
T 3ele_A 300 QGAT----G----DINAYKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKALED------------DSNAFCEKAKE-EDV 357 (398)
T ss_dssp TTCC----C----CHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECSSS------------CHHHHHHHHHT-TTE
T ss_pred hcCH----H----HHHHHHHHHHHHHHHHHHc-CCeecCCCeeEEEEEEcCCC------------CHHHHHHHHHH-CCE
Confidence 7652 1 3567788888999999888 88888899999999998764 67889888765 599
Q ss_pred EeccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 308 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
.+.||..|+.++++||+++.+++++++++++|++++++++
T Consensus 358 ~v~~g~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 358 LIVAADGFGCPGWVRISYCVDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp ECEESGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999988899999998899999999999999998765
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=328.68 Aligned_cols=325 Identities=23% Similarity=0.325 Sum_probs=278.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++. ..++| +.+++++. ++|+++++++|++|+|+++++..++.++.++||+|+++.|+|.++...++..|
T Consensus 63 ~y~~~--~~~l~------~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g 134 (399)
T 1c7n_A 63 GYTGP--TEEYK------KTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQE 134 (399)
T ss_dssp SSBCC--CHHHH------HHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTT
T ss_pred CCCCC--cHHHH------HHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcC
Confidence 45443 78899 99999998 67877788999999999999999999999999999999999999999999999
Q ss_pred CeEEEeccc-CCCCcccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 82 ATPVILPTR-ISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 82 ~~v~~i~~~-~~~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.+++.++++ .++++.+|+++|+++++ +++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++
T Consensus 135 ~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g 213 (399)
T 1c7n_A 135 RKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKS-DLMLWSDEIHFDLIMPG 213 (399)
T ss_dssp CEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHS-SCEEEEECTTTTCBCTT
T ss_pred CEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHc-CCEEEEEccccccccCC
Confidence 999999986 33346789999999997 6899999999999999999999999999999999 99999999999988876
Q ss_pred CCccccccCCCC-CCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhhcccc-CCChHHHHHHHHHhcccCCChH
Q 018665 160 ATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 160 ~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
....++..+... .++++++.|+||.+|++|+|+||++++ +++++.+......++. +++++.+.++.++++. ..+
T Consensus 214 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~ 290 (399)
T 1c7n_A 214 YEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKE---CGK 290 (399)
T ss_dssp CCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH---CHH
T ss_pred CCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhC---ChH
Confidence 545555554321 367899999999999899999999987 5788888876655543 6799999999888875 257
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
++++.++.++++++.+.+.|++ +|++.+..+.+++++|+++++.. .+..++.+.|.+++||.+.||..|
T Consensus 291 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~gi~v~~g~~~ 360 (399)
T 1c7n_A 291 WLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK----------MDHKAMEEFMIHKAQIFFDEGYIF 360 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC----------CCHHHHHHHHHHTTCCCCEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCC----------CCHHHHHHHHHHhCCEEEeCcccc
Confidence 7889999999999999999998 78998888888998899987520 167889999885569999999887
Q ss_pred C--CCCeEEEEeecCHHHHHHHHHHHHHHHhhhCCC
Q 018665 316 G--DDTCIRISYAASLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 316 ~--~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
+ .++++||+++.+++++++++++|++++++++.+
T Consensus 361 ~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~~~ 396 (399)
T 1c7n_A 361 GDGGIGFERINLAAPSSVIQESLERLNKALKDLKNR 396 (399)
T ss_dssp CGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCCeEEEEeccCHHHHHHHHHHHHHHHHHHHhc
Confidence 6 468999999998899999999999999887653
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=331.55 Aligned_cols=322 Identities=29% Similarity=0.512 Sum_probs=279.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++..+..++| +.++++++ .+|+++++++|++++|+++++..++.+++++||+|+++.|+|.++...++..|
T Consensus 73 ~y~~~~g~~~l~------~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g 146 (406)
T 1xi9_A 73 YYGDSEGLPELR------KAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYG 146 (406)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTT
T ss_pred CCCCCCCcHHHH------HHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcC
Confidence 477778889999 99999999 78888888999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++++.+.++.+|++.|++.+++++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++ .
T Consensus 147 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~-~~~li~De~~~~~~~~~-~ 224 (406)
T 1xi9_A 147 GKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY-EIPVISDEIYDLMTYEG-E 224 (406)
T ss_dssp CEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBSSS-C
T ss_pred CEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEEcCccccccCC-C
Confidence 999999987545677899999999988899999999999999999999999999999999 99999999999987732 2
Q ss_pred ccccccCCCCCCc-eEEEeccccccccccceeEEEE--cCh----hHHHHHHhhhhccccCCChHHHHHHHHHhcccCCC
Q 018665 162 HTSFASLPGMWER-TLTVNGFSKAFAMTGWRLGYIA--GPK----HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 162 ~~~~~~~~~~~~~-~i~~~s~sK~~g~~g~~~g~l~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
..++..+. .++ +++++|+||.+|++|+|+||++ +++ ++++.+....... ++++++.+.++.++++. .
T Consensus 225 ~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~---~ 298 (406)
T 1xi9_A 225 HISPGSLT--KDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTG---P 298 (406)
T ss_dssp CCCHHHHC--SSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHS---C
T ss_pred CCCHHHcC--CCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhC---C
Confidence 34455543 467 8999999999988999999999 999 9999888765544 67899999999999964 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~ 314 (352)
.++++++++.++++++.+.+.|+++|++.+..+.+++++|++++...+ .+..++.+.|.++.||.+.+|..
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~~~gi~v~~g~~ 369 (406)
T 1xi9_A 299 MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPW---------KNDKEFVLDVLHNAHVLFVHGSG 369 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSC---------SSHHHHHHHHHHHHCEECEEGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEecCccCC---------CCHHHHHHHHHHhCCEEEeCchh
Confidence 456888899999999999999999888988888889989888864100 16788999888455999999988
Q ss_pred CCC--CCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 315 FGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 315 ~~~--~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
|+. ++++||+++.+++++++++++|+++++++.
T Consensus 370 f~~~~~~~lRis~~~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 370 FGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp GCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 865 689999999899999999999999998753
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-44 Score=325.87 Aligned_cols=318 Identities=19% Similarity=0.320 Sum_probs=280.7
Q ss_pred ChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEec
Q 018665 10 TLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 88 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~ 88 (352)
..+++ +.+++++. .+|+++++++|++++|+++++..++.++.++||+|+++.|+|.++...++..|.+++.++
T Consensus 64 ~~~l~------~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~ 137 (391)
T 3dzz_A 64 PAEYY------KAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSD 137 (391)
T ss_dssp CHHHH------HHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECC
T ss_pred CHHHH------HHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEee
Confidence 67888 99999999 888888899999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCCcccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccc
Q 018665 89 TR-ISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 89 ~~-~~~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
++ .++++.+|+++|+++++ +++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+.+....++.
T Consensus 138 ~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~ 216 (391)
T 3dzz_A 138 LIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKH-QVLLISDEIHGDLVLTDEDITPAF 216 (391)
T ss_dssp CEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCCGG
T ss_pred eeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHC-CCEEEEecccccccCCCCCceehh
Confidence 86 34556789999999997 7899999999999999999999999999999999 999999999999888876666776
Q ss_pred cCCCC-CCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhh-ccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 167 SLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQS-QFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 167 ~~~~~-~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
.+... .++++++.|+||.+|++|+|+||++++ +++++.+..... ...++++++.+.++.++++. ..+++++.++
T Consensus 217 ~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~ 293 (391)
T 3dzz_A 217 TVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEE---GHDWLRELKQ 293 (391)
T ss_dssp GSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHH---CHHHHHHHHH
T ss_pred hcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc---cHHHHHHHHH
Confidence 66532 468899999999999899999999997 888888877643 33457899999999999886 3677899999
Q ss_pred HHHHHHHHHHHHhcc-cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCC--Ce
Q 018665 244 AFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TC 320 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~--~~ 320 (352)
+++++++.+.+.|++ +|++.+..+.+++++|++++... .+..++.+.|++++||.+.||..|+.. ++
T Consensus 294 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~ 363 (391)
T 3dzz_A 294 VLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALG----------MNAEDFCKYLREKTGLIISAGNGYRGNGHEF 363 (391)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGC----------SCHHHHHHHHHHHHCEECEESGGGCTTGGGE
T ss_pred HHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcC----------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCE
Confidence 999999999999998 78999999999999999987531 178899999974559999999888754 89
Q ss_pred EEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 321 IRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
+|++++.+++++++++++|++++++++
T Consensus 364 iRis~~~~~~~i~~~l~~l~~~l~~~~ 390 (391)
T 3dzz_A 364 VRINLACPKELVIDGMQRLKQGVLNLN 390 (391)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=330.85 Aligned_cols=330 Identities=24% Similarity=0.376 Sum_probs=277.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-------hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-------ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP 74 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-------~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~ 74 (352)
..|++..+..++| +++|++++ ++|+++++++|++++|+++++..++.+++++||+|+++.|+|.++.
T Consensus 69 ~~y~~~~~~~~lr------~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~ 142 (416)
T 1bw0_A 69 NGYFPTVGSPEAR------EAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYE 142 (416)
T ss_dssp SSCCCTTCCHHHH------HHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHH
T ss_pred CCcCCCCCCHHHH------HHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHH
Confidence 3577778999999 99999998 5677778899999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 75 EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 75 ~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
..++..|.+++.++++.+.++.+|+++|+++++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|++
T Consensus 143 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~ 221 (416)
T 1bw0_A 143 TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEEL-RLPLFSDEIYAG 221 (416)
T ss_dssp HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTT
T ss_pred HHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CCEEEEEccccc
Confidence 9999999999999987554577899999999988899999999999999999999999999999999 999999999999
Q ss_pred cccCCC----CccccccCCCCCCceEEEeccccccccccceeEEEEcChh--HHHHHH----hhhhccccCCChHHHHHH
Q 018665 155 IIYAPA----THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAACN----KIQSQFTSGASSISQKAG 224 (352)
Q Consensus 155 ~~~~~~----~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~ 224 (352)
+.+++. ...++..+.. .+++++++|+||.++++|+|+||++++++ +++.+. ... ..++++|++.+.++
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~ 299 (416)
T 1bw0_A 222 MVFKGKDPNATFTSVADFET-TVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG-MLVCGPCTVVQAAL 299 (416)
T ss_dssp CBCCSSCTTCCCCCTTSSCC-SCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH-HHHTCSCHHHHHHH
T ss_pred cccCCCCCCCCccCHHHccC-CCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHh-ccccCCCcHHHHHH
Confidence 887765 3445554433 35689999999999889999999998663 444333 221 13457899999999
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 225 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
.++++.. ..+++++.+++++++++++.+.|+++|++.+..+.+|+++|++++... .. ...+..++.+.|+++
T Consensus 300 ~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~l~~~ 371 (416)
T 1bw0_A 300 GEALLNT--PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK---YR---DIKTDVEFFEKLLEE 371 (416)
T ss_dssp HHHHHSS--CHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGG---BS---SCCSHHHHHHHHHHH
T ss_pred HHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHH---cC---CCCCHHHHHHHHHHH
Confidence 9999742 267788999999999999999999988998887888988998876320 00 001677888888655
Q ss_pred cCEEeccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 305 AQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 305 ~gi~i~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+||.+.||..|+.++++||+++.+++++++++++|++++++.+.
T Consensus 372 ~gi~v~~g~~f~~~~~iRis~~~~~e~l~~~l~~l~~~l~~~~~ 415 (416)
T 1bw0_A 372 ENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHAA 415 (416)
T ss_dssp HCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHBC
T ss_pred CCEEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhhc
Confidence 69999999988878999999988999999999999999987654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-45 Score=329.72 Aligned_cols=316 Identities=22% Similarity=0.335 Sum_probs=279.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+++.|..++| +.+++++. .+++++|++++|+++++..++.+++++||+|+++.|+|.++...++..|.
T Consensus 58 ~y~~~~g~~~l~------~~la~~~~----~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~ 127 (375)
T 3op7_A 58 NYGWIEGSPAFK------KSVSQLYT----GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGA 127 (375)
T ss_dssp SSCCTTCCHHHH------HHHHTTSS----SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHTTC
T ss_pred CCCCCCChHHHH------HHHHHHhc----cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCC
Confidence 588899999999 99999873 25678999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++.++++.+|+++|++++++++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+.+ .
T Consensus 128 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~-~~~li~De~~~~~~~~~--~ 204 (375)
T 3op7_A 128 EVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEV-GAYILSDEVYRSFSELD--V 204 (375)
T ss_dssp EEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECCSCCCSSSC--C
T ss_pred EEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEcccccccccC--C
Confidence 99999998666778999999999999999999999999999999999999999999999 99999999999876541 2
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
.++.. .+++++++.|+||.+|++|+|+||+++++++++.+......++.+++++.+.++..+++. .+.++++.+
T Consensus 205 ~~~~~---~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~ 278 (375)
T 3op7_A 205 PSIIE---VYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAH---YQEILERNR 278 (375)
T ss_dssp CCHHH---HCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT---HHHHHHHHH
T ss_pred Cchhh---hcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhc---cHHHHHHHH
Confidence 22222 246789999999999989999999999999999998887777788899999999888875 356788888
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEE
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 322 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iR 322 (352)
+.++++++.+.+.|++.+++.+..+.++++.|+.++... +..++++.|++++||.+.||..|+.++++|
T Consensus 279 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ll~~~gi~v~~g~~~~~~~~iR 347 (375)
T 3op7_A 279 HILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM-----------PMEDFCLQLLQEHGVLLVPGNRFERDGYVR 347 (375)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS-----------CHHHHHHHHHHHHCEECEEGGGGTCTTEEE
T ss_pred HHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC-----------CHHHHHHHHHHhCCEEEeChhhhCCCCeEE
Confidence 899999999999999888899888888888888887542 678898988766699999999888889999
Q ss_pred EEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 323 ISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 323 i~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
++++.+++++++++++|++++++++.
T Consensus 348 i~~~~~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 348 LGFACEQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp ECCCSCHHHHHHHHHHHHHHHGGGC-
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999889999999999999988764
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=323.91 Aligned_cols=321 Identities=16% Similarity=0.270 Sum_probs=273.6
Q ss_pred ccCCCCCChh-hhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQ-MRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~-l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|++. ..+ +| +.++++++ ++|+.+++++|++++|+++++..++.++.++||+|+++.|+|.++...++..
T Consensus 60 ~y~~~--~~~~lr------~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~ 131 (390)
T 1d2f_A 60 GYSRW--KNDEFL------AAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGN 131 (390)
T ss_dssp CCCCS--CCHHHH------HHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHT
T ss_pred CCCCC--ChHHHH------HHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHC
Confidence 35443 677 89 99999999 7888788899999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCC-CcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 81 DATPVILPTRISE-NFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 81 g~~v~~i~~~~~~-~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
|.+++.++++.++ ++.+|+++|++++++ ++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.++
T Consensus 132 g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~ 210 (390)
T 1d2f_A 132 QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERH-GVRVISDEIHMDMVWG 210 (390)
T ss_dssp TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHT-TCEEEEECTTTTCBCS
T ss_pred CCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc-CCEEEEEccccccccC
Confidence 9999999987543 567899999999975 889999999999999999999999999999999 9999999999998887
Q ss_pred CCCccccccCCCCCCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhh-cccc-CCChHHHHHHHHHhcccCCCh
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQS-QFTS-GASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~ 235 (352)
+....++..+...+ ... +.|+||.+|++|+|+||++++ +++++.+..... ..++ +++++.+.++.++++. ..
T Consensus 211 g~~~~~~~~~~~~~-~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~ 285 (390)
T 1d2f_A 211 EQPHIPWSNVARGD-WAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ---GA 285 (390)
T ss_dssp SSCCCCGGGTCCSS-EEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH---CH
T ss_pred CCCCcCHHHcchhh-Hhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhc---CH
Confidence 65555555554322 123 999999999899999999985 788888877654 3443 7899999888888875 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 314 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~ 314 (352)
+++++.++.++++++.+.+.|++ +|++.+..+.+++++|++++... .+..++.+.|.+++||.+.||..
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~l~~~~gi~v~~g~~ 355 (390)
T 1d2f_A 286 PWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN----------IDDNALQKALIEQEKVAIMPGYT 355 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC----------CCHHHHHHHHHHTTCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEccccC----------CCHHHHHHHHHHHcCEEeeCccc
Confidence 77889999999999999999998 78998888888898899987530 16788999988656999999988
Q ss_pred CC--CCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 315 FG--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 315 ~~--~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
|+ .++++||+++.+++++++++++|++++++++
T Consensus 356 f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~~~ 390 (390)
T 1d2f_A 356 YGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 390 (390)
T ss_dssp GCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhC
Confidence 75 3679999999988999999999999998753
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-44 Score=329.62 Aligned_cols=320 Identities=17% Similarity=0.244 Sum_probs=273.1
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCc---EEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQ---ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~---i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~ 78 (352)
..|+++.|..++| +.+|+++.+.++.+++++ |++|+|+++++..++.+++++||+|+++.|+|.++...++
T Consensus 82 ~~y~~~~g~~~lr------~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~ 155 (430)
T 2x5f_A 82 FPYAPPQGIEELR------DLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFN 155 (430)
T ss_dssp SSCCCTTCCHHHH------HHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHT
T ss_pred cccCCCCCCHHHH------HHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHH
Confidence 4687888999999 999999984446677888 9999999999999999999999999999999999999999
Q ss_pred h-cCCeEEEecccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh-----CCCEEEEec
Q 018665 79 I-ADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAK-----HPRLLVLSD 149 (352)
Q Consensus 79 ~-~g~~v~~i~~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~-----~~~~~livD 149 (352)
. .|.+++.++++.++ +.+|+++|++++++ +++++++++|+||||.++|.+++++|+++|++ + |+++|+|
T Consensus 156 ~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~-~~~li~D 233 (430)
T 2x5f_A 156 TRNGANLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGT-KVIAVVD 233 (430)
T ss_dssp TTTCCEEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred HhcCCeEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccC-CEEEEEe
Confidence 9 99999999987533 67899999999976 88999999999999999999999999999999 9 9999999
Q ss_pred ccccccccCCCCccccc-cCCCCCCc---eEEEeccccccccccceeEEEEc---ChhHHHHHHhhhhc----cccCCCh
Q 018665 150 EIYEHIIYAPATHTSFA-SLPGMWER---TLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACNKIQSQ----FTSGASS 218 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~~~~---~i~~~s~sK~~g~~g~~~g~l~~---~~~~~~~~~~~~~~----~~~~~~~ 218 (352)
|+|+++.+++....++. .+....++ ++++.|+||.+|++|+|+||+++ ++++++.+...... .++++|+
T Consensus 234 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 313 (430)
T 2x5f_A 234 DAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPL 313 (430)
T ss_dssp CTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCH
T ss_pred hhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCCh
Confidence 99999887765444443 44322467 89999999999989999999999 99999988776544 5677999
Q ss_pred HHHHHHHHHhc-ccCCChHHHHHHHHHHHHHHHHHHHHhc----ccCCceecCCCCceEEEeecCCccCCcccCCCCCCC
Q 018665 219 ISQKAGVAALG-LGYAGGEVVSKMVKAFRERRDFLVKSFG----ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 293 (352)
Q Consensus 219 ~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
+.+.++.++++ .... .+.+++.++.++++++.+.+.|+ +. ++.+..+.+|+++|+++++. +
T Consensus 314 ~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~~~------------~ 379 (430)
T 2x5f_A 314 PTQSAVKHVLKNNKQF-DKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVHDV------------D 379 (430)
T ss_dssp HHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEESSS------------C
T ss_pred HHHHHHHHHHccChHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCCCC------------C
Confidence 99999999998 6211 22334488899999999999998 55 78888888899999998732 7
Q ss_pred hHHHHHHHHHccCEEeccCCCCCCCCeEEEEee-cCHHHHHHHHHHHHHHHhhhC
Q 018665 294 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-ASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 294 ~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~-~~~~~l~~~~~~l~~~~~~~~ 347 (352)
..++.+.|.+++||.+.|| .++++||+++ .+++++++++++|++++++++
T Consensus 380 ~~~~~~~l~~~~gi~v~~g----~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 430 (430)
T 2x5f_A 380 PEALRKHLIDKYSIGVIAL----NATDIRIAFSCVEKDDIPHVFDSIAKAIDDLR 430 (430)
T ss_dssp HHHHHHHHHHHHCEECEEC----SSSEEEEEGGGSCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCEEEecC----CCCeEEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence 8899999987459999997 4679999999 588999999999999998753
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=323.34 Aligned_cols=315 Identities=24% Similarity=0.411 Sum_probs=277.3
Q ss_pred CCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEE
Q 018665 8 QGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~ 86 (352)
.+..+++ +.+++++. .+|+++++++|++++|+++++..++.+++++||+|+++.|+|.++...++..|.+++.
T Consensus 67 ~~~~~~~------~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~ 140 (391)
T 4dq6_A 67 TRPDSYN------ESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELII 140 (391)
T ss_dssp CCCHHHH------HHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEE
T ss_pred CCCHHHH------HHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEe
Confidence 3567888 99999999 7888788899999999999999999999999999999999999999999999999999
Q ss_pred eccc--CCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 87 LPTR--ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 87 i~~~--~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
++++ .++++.+|+++|++++++ ++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++....+
T Consensus 141 ~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~ 218 (391)
T 4dq6_A 141 SPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKH-NVKIISDEIHSDIILKKHKHIP 218 (391)
T ss_dssp CCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCC
T ss_pred eeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CCEEEeeccccccccCCCCccC
Confidence 9987 456677999999999987 99999999999999999999999999999999 9999999999999888766666
Q ss_pred cccCCCC-CCceEEEeccccccccccceeEEEEcCh-hHHHHHHhhhhcc-ccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 165 FASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 165 ~~~~~~~-~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
+..+..+ +++++++.|+||.+|++|+|+||+++++ ++++.+......+ ..+++++.+.++.++++. ..+++++.
T Consensus 219 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~ 295 (391)
T 4dq6_A 219 MASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNN---GESWLESF 295 (391)
T ss_dssp GGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH---CHHHHHHH
T ss_pred HHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc---hHHHHHHH
Confidence 6665432 4688999999999998999999999876 8888887764433 447889999999998886 36778899
Q ss_pred HHHHHHHHHHHHHHhcc-cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--C
Q 018665 242 VKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D 318 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~ 318 (352)
+++++++++.+.+.|++ +|++.+..+.+++++|++++... .+..++.+.|.+++||.+.||..|+. +
T Consensus 296 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~ 365 (391)
T 4dq6_A 296 LEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALG----------LSDEELESILVQKGKVALNQGNSFGIGGS 365 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGC----------CCHHHHHHHHHHTTCEECEEGGGGCTTCT
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcC----------CCHHHHHHHHHHhCCEEeeCchhhCCCCC
Confidence 99999999999999988 68999999999999999987521 17889999999877999999988865 4
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 319 TCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
+++|++++.+++++++++++|++++
T Consensus 366 ~~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 366 GYQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp TEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999999886
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=327.37 Aligned_cols=329 Identities=19% Similarity=0.356 Sum_probs=272.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCC--CCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH-
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLS--YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR- 78 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~--~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~- 78 (352)
.|+++.|..++| +.+|++++ .+|+. +++++|++++|+++++..++.+++++||+|+++.|+|.++...+.
T Consensus 78 ~Y~~~~g~~~lr------~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~ 151 (428)
T 1iay_A 78 NFQDYHGLPEFR------KAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRW 151 (428)
T ss_dssp HCCCTTCCHHHH------HHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTT
T ss_pred CCCCCCCcHHHH------HHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHH
Confidence 577777899999 99999999 77866 678999999999999999999999999999999999999987554
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
..|.+++.++.+.+.++.+|++++++++++ ++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|
T Consensus 152 ~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~ 230 (428)
T 1iay_A 152 RTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH-NIHLVCDEIY 230 (428)
T ss_dssp TTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECTT
T ss_pred hcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHC-CeEEEEeccc
Confidence 689999999987555677899999998863 688999999999999999999999999999999 9999999999
Q ss_pred cccccCCCCccccccCCCC-------CCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHH
Q 018665 153 EHIIYAPATHTSFASLPGM-------WERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAG 224 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~-------~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (352)
+++.+++....++..+... .++++++.|+||.+|++|+|+||+++ ++++++.+...... ++.|++.+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~ 308 (428)
T 1iay_A 231 AATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFL 308 (428)
T ss_dssp GGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHH
T ss_pred cccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhc--ccCCHHHHHHH
Confidence 9987765433344443322 47889999999999999999999998 67888888765443 45889999999
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 225 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
.++++......+++++.++.++++++.+.+.|+++ |+.+..+.+|+++|+++++..... ...+..++.+.|.++
T Consensus 309 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~ 382 (428)
T 1iay_A 309 AAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRES-----TFDSEMSLWRVIIND 382 (428)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCSSS-----SHHHHHHHHHHHHHT
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEechhhcCCC-----chhHHHHHHHHHHHh
Confidence 99998621012367788889999999999999988 888877778999999987531000 000345788888877
Q ss_pred cCEEeccCCCCCC--CCeEEEEee-cCHHHHHHHHHHHHHHHhhh
Q 018665 305 AQVALVPGDAFGD--DTCIRISYA-ASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 305 ~gi~i~~g~~~~~--~~~iRi~~~-~~~~~l~~~~~~l~~~~~~~ 346 (352)
+||.+.+|..|+. ++++||+++ .+++++++++++|++++++.
T Consensus 383 ~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 383 VKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp SCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence 7999999987764 579999999 59999999999999998764
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-44 Score=327.84 Aligned_cols=315 Identities=24% Similarity=0.368 Sum_probs=279.3
Q ss_pred ChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEec
Q 018665 10 TLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 88 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~ 88 (352)
..+++ +.+++++. .+++++++++|++++|+++|++.++.++.++||+|+++.|+|.++...++..|.+++.+|
T Consensus 98 ~~~l~------~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~ 171 (421)
T 3l8a_A 98 NDDLY------QAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENS 171 (421)
T ss_dssp CHHHH------HHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEE
T ss_pred CHHHH------HHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEecc
Confidence 37788 99999999 888888899999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCCcccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccc
Q 018665 89 TR-ISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 89 ~~-~~~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
++ .+.++.+|++.|+++++ ++++++++++|+||+|.+++.+++++|+++|+++ |+++|+||+|+++.+++....++.
T Consensus 172 ~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~ 250 (421)
T 3l8a_A 172 LQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKH-GVILVSDEIHQDLALFGNTHHSLN 250 (421)
T ss_dssp CEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGG
T ss_pred ccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCccHH
Confidence 87 45667789999999998 7899999999999999999999999999999999 999999999999998887667777
Q ss_pred cCCCC-CCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhhc-cccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 167 SLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 167 ~~~~~-~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
.+..+ .++++++.|+||.+|++|+|+|+++++ +++++.+...... ...++|++.+.++.++++. ..++++++.+
T Consensus 251 ~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~---~~~~~~~~~~ 327 (421)
T 3l8a_A 251 TLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQY---GKPWLEELKT 327 (421)
T ss_dssp GSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH---CHHHHHHHHH
T ss_pred HcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhc---cHHHHHHHHH
Confidence 66543 578899999999999899999999998 8888888776533 3447899999999999985 3788999999
Q ss_pred HHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--CCeE
Q 018665 244 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCI 321 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~~~i 321 (352)
+++++++++.+.|+++|++.+..+.++++.|++++... .+..++.+.|++++||.+.+|..|+. ++++
T Consensus 328 ~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~----------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~i 397 (421)
T 3l8a_A 328 VIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYA----------IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFA 397 (421)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGT----------CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEE
T ss_pred HHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEeccccC----------CCHHHHHHHHHHhCCEEEECchhhCCCCCCEE
Confidence 99999999999999878999999999999999987521 16778999998777999999988864 6899
Q ss_pred EEEeecCHHHHHHHHHHHHHHHh
Q 018665 322 RISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~~~ 344 (352)
||+++.+++++++++++|+++++
T Consensus 398 Ri~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 398 RLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp EEECCSCHHHHHHHHHHHHHHC-
T ss_pred EEEecCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-44 Score=334.10 Aligned_cols=334 Identities=21% Similarity=0.345 Sum_probs=273.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hc-CCCCCCCcEEEeCChHHHHHHHHHHhcCCCC----EEEecCCCCCChHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-EN-GLSYTPDQILVSNGAKQSILQAVLAVCSPGD----EVIIPAPFWVSYPEM 76 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~-~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~----~vl~~~~~~~~~~~~ 76 (352)
.|+++.|..++| +.+++++. ++ |+++++++|++|+|+++++..++.++.++|| .|+++.|+|..+...
T Consensus 124 ~Y~~~~G~~~lr------~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~ 197 (498)
T 3ihj_A 124 SYSASQGVNCIR------EDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAV 197 (498)
T ss_dssp ----CCSCHHHH------HHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHH
T ss_pred CCCCCCCHHHHH------HHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHH
Confidence 588999999999 99999999 66 5888899999999999999999999998875 999999999999999
Q ss_pred HHhcCCeEEEecccCCCCcccCHHHHHhhccC-----CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 77 ARIADATPVILPTRISENFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 77 ~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~-----~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
++..|.+++.++++++++|.+|+++|++++++ ++++|++++|+||||.+++.+++++|+++|+++ |+++|+||+
T Consensus 198 ~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~-~~~li~De~ 276 (498)
T 3ihj_A 198 ISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE-KLFLLADEV 276 (498)
T ss_dssp HHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECT
T ss_pred HHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHc-CcEEEEEcC
Confidence 99999999999998877889999999999975 589999999999999999999999999999999 999999999
Q ss_pred ccccccCCC-CccccccCCC-------CCCceEEEecccccc-ccccceeEEEE---cChhHHHHHHhhhhccccCCChH
Q 018665 152 YEHIIYAPA-THTSFASLPG-------MWERTLTVNGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQSQFTSGASSI 219 (352)
Q Consensus 152 ~~~~~~~~~-~~~~~~~~~~-------~~~~~i~~~s~sK~~-g~~g~~~g~l~---~~~~~~~~~~~~~~~~~~~~~~~ 219 (352)
|+.+.+++. ...++..+.. ...++++++|+||.+ |++|+|+||++ .++++++.+..... ...+++.+
T Consensus 277 y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~-~~~~~~~~ 355 (498)
T 3ihj_A 277 YQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLS-VRLCPPVS 355 (498)
T ss_dssp TTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHH-HSCCCCHH
T ss_pred ccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHh-ccCCCCHH
Confidence 999888754 4455544311 123578999999999 88999999998 68899998887654 44578899
Q ss_pred HHHHHHHHhcccCC----ChH---HHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccC--C--cccCC
Q 018665 220 SQKAGVAALGLGYA----GGE---VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG--S--EAEGF 288 (352)
Q Consensus 220 ~~~~~~~~l~~~~~----~~~---~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~--~--~~~~~ 288 (352)
.|.++..+++.... ... ..+++++.++++++.+.+.|+++||+.+..+++++++|++++.... . ...+
T Consensus 356 ~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g- 434 (498)
T 3ihj_A 356 GQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQ- 434 (498)
T ss_dssp HHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTT-
T ss_pred HHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcC-
Confidence 99988888864110 022 3456778899999999999999999999999999999976532100 0 0001
Q ss_pred CCCCChHHH-HHHHHHccCEEeccCCCCCC---CCeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 289 GKIENSESL-CRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 289 ~~~~~~~~~-~~~l~~~~gi~i~~g~~~~~---~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+.+++ +.+++++.||.+.||+.|+. +.++|+++..+++++++++++|+++++++..
T Consensus 435 ---~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 435 ---MAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp ---SCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 144443 56666667999999999874 3599999988999999999999999987653
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-44 Score=324.82 Aligned_cols=311 Identities=19% Similarity=0.281 Sum_probs=270.3
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCC--CCEEEecCCCCCChHHHHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSP--GDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~--~~~vl~~~~~~~~~~~~~~ 78 (352)
..|++..|..++| +.+++++. ++|.++++++|++|+|+++++..++.+++++ ||+|+++.|+|.++...++
T Consensus 53 ~~y~~~~g~~~lr------~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~ 126 (376)
T 3ezs_A 53 NIYPKSAFEESLR------AAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAK 126 (376)
T ss_dssp GSCCCTTCCHHHH------HHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHH
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHH
Confidence 4588888899999 99999998 7788778899999999999999999999999 9999999999999999999
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
..|.+++.++++.+++ +++ ++++.++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.++
T Consensus 127 ~~g~~~~~~~~~~~~~--~~~-~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~ 202 (376)
T 3ezs_A 127 FIKAKSLLMPLTKEND--FTP-SLNEKELQEVDLVILNSPNNPTGRTLSLEELISWVKLALKH-DFILINDECYSEIYEN 202 (376)
T ss_dssp HTTCEEEEEECCGGGT--SCC-CCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBSS
T ss_pred HcCCEEEEcccCCCCC--cch-hHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHc-CcEEEEEccchhhccC
Confidence 9999999999875444 344 66666767889999999999999999999999999999999 9999999999998877
Q ss_pred CCCccccccCCC-----CCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCC
Q 018665 159 PATHTSFASLPG-----MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 159 ~~~~~~~~~~~~-----~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
+. ..++..... .+++++++.|+||.+|++|+|+||+++++++++.+.......+++++++.+.++.++++.
T Consensus 203 ~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--- 278 (376)
T 3ezs_A 203 TP-PPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD--- 278 (376)
T ss_dssp SC-CCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC---
T ss_pred CC-CCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---
Confidence 63 333333211 357899999999999889999999999999999998877777788999999999999986
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
.+++++.++.++++++.+.+.|+ ++. .+..++++|++++ +..++.+.|.+++||.+.||.
T Consensus 279 -~~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~ 338 (376)
T 3ezs_A 279 -DRHAEFFRNIYANNLKLARKIFK---NTL--IYPYSFYVYLPVQ--------------NGENFAKTLYQNEGIITLPAL 338 (376)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHST---TCC--CCSBSSEEEEECS--------------CHHHHHHHHHHHHCCBCEEGG
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhc---CCC--CCCcceEEEEECC--------------CHHHHHHHHHHhCCEEEeCcH
Confidence 56788999999999999999998 444 5788899999886 467888998874599999998
Q ss_pred CCC----CCCeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 314 AFG----DDTCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 314 ~~~----~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
.|+ .++++||+++.+++++++++++|++++++.
T Consensus 339 ~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~ 375 (376)
T 3ezs_A 339 YLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRENH 375 (376)
T ss_dssp GGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHCC-
T ss_pred HhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 886 458999999889999999999999998753
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=322.81 Aligned_cols=318 Identities=26% Similarity=0.499 Sum_probs=277.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++..+..++| +.++++++ .+|+++++++|++++|+++++..++.++.++||+|+++.|+|.++...++..|
T Consensus 74 ~y~~~~g~~~l~------~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g 147 (409)
T 2gb3_A 74 YYSHSAGIWELR------EAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAG 147 (409)
T ss_dssp CCCCTTCCHHHH------HHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHT
T ss_pred CCCCCCCcHHHH------HHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC
Confidence 577778899999 99999999 78888888999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++++.++++.+ +++|+++++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++.
T Consensus 148 ~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~Dea~~~~~~~~~- 224 (409)
T 2gb3_A 148 VKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERH-GLFLIVDEVYSEIVFRGE- 224 (409)
T ss_dssp CEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSC-
T ss_pred CEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEECcccccccCCC-
Confidence 9999999875344445 8999999988899999999999999999999999999999999 999999999999877652
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcCh-hHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
..++ +....++++++.|+||.+|++|+|+||+++++ ++++.+......++ +++++.+.++.++++. ...++++
T Consensus 225 ~~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~---~~~~~~~ 298 (409)
T 2gb3_A 225 FASA--LSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNL---DDSFFDF 298 (409)
T ss_dssp CCCG--GGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTC---CHHHHHH
T ss_pred CCCc--cccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhc---cHHHHHH
Confidence 2332 21223678999999999998999999999998 99998887766665 7899999999999975 3677889
Q ss_pred HHHHHHHHHHHHHHHhcccCCcee-cCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc-----cCEEeccCCC
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-----AQVALVPGDA 314 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~gi~i~~g~~ 314 (352)
+++.++++++.+.+.|+++ |+.+ ..+.+++++|+++++. +..++.+.|.++ +||.+.||..
T Consensus 299 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~l~~~~~~~~~gi~v~~g~~ 365 (409)
T 2gb3_A 299 VRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAELPVE------------DAEEFARWMLTDFNMDGETTMVAPLRG 365 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECSSS------------CHHHHHHHHHHSCCBTTEEEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEeCCC------------CHHHHHHHHHhccccccCcEEEeCchH
Confidence 9999999999999999988 8888 7788899999988732 788999999876 5999999987
Q ss_pred CCC-----CCeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 315 FGD-----DTCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 315 ~~~-----~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
|+. ++++|++++.+++++++++++|++++++++.
T Consensus 366 f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 366 FYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS 404 (409)
T ss_dssp GCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHHC
T ss_pred hCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhhh
Confidence 753 6799999999999999999999999988765
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-44 Score=329.97 Aligned_cols=331 Identities=21% Similarity=0.365 Sum_probs=276.8
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcC--CCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~--~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~ 78 (352)
..|++..|..++| +.++++++ .++ +++++++|++++|+++++..++.+++++||.|+++.|+|.++...++
T Consensus 80 ~~y~~~~g~~~l~------~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~ 153 (435)
T 3piu_A 80 ALFQDYHGLPAFK------KAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLK 153 (435)
T ss_dssp HHCCCTTCCHHHH------HHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTT
T ss_pred cccCCCCCcHHHH------HHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHH
Confidence 3588889999999 99999998 444 55678999999999999999999999999999999999999998888
Q ss_pred -hcCCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 79 -IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 79 -~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
..|.+++.++++.+.++.+|++.|++++++ ++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+
T Consensus 154 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea 232 (435)
T 3piu_A 154 WRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK-GIHLISDEI 232 (435)
T ss_dssp TTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECT
T ss_pred HhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEecc
Confidence 789999999998766678999999999975 789999999999999999999999999999999 999999999
Q ss_pred ccccccCCCCccccccCCCC---------CCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHH
Q 018665 152 YEHIIYAPATHTSFASLPGM---------WERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQ 221 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
|+++.+++....++..+..+ +++++++.|+||.+|++|+|+||+++ ++.+.+.+...... ...+++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 310 (435)
T 3piu_A 233 YSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQ 310 (435)
T ss_dssp TGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGG--SCCCHHHH
T ss_pred ccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhc--CCCCHHHH
Confidence 99988877655554443322 57889999999999999999999998 56677777665443 35788899
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHH
Q 018665 222 KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 301 (352)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 301 (352)
.++.++++......+++++.+++++++++.+.+.|++. |+.+..+.+|+++|++++....... ..+..++.+.|
T Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~~~~-----~~~~~~~~~~l 384 (435)
T 3piu_A 311 HLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSNT-----FEAEMELWKKI 384 (435)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSSSS-----HHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEcccccccCC-----chhHHHHHHHH
Confidence 99888887521112356777888999999999999988 8998888888999999876421000 00245788888
Q ss_pred HHccCEEeccCCCCC--CCCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 302 LDKAQVALVPGDAFG--DDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 302 ~~~~gi~i~~g~~~~--~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
++++||.+.||..|+ .++++||+++. +++++++++++|++++++++
T Consensus 385 ~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 385 VYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp HHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 887799999998775 36899999988 99999999999999998765
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=332.85 Aligned_cols=335 Identities=21% Similarity=0.298 Sum_probs=276.9
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
..|++..|..++| +.++++++ ++|+++++++|++|+|+++++..++.+++ ++||.|+++.|+|..+...++.
T Consensus 128 ~~Y~~~~G~~~lr------~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~ 201 (500)
T 3tcm_A 128 GAYSHSQGIHGLR------DAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIAL 201 (500)
T ss_dssp SSCCCTTCCHHHH------HHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHH
T ss_pred CCcCCCcChHHHH------HHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHH
Confidence 3588899999999 99999999 88988899999999999999999999998 7999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~ 153 (352)
.|.+++.++++++.+|.+|+++|++++++ ++++|++++|+||||.+++.+++++|+++|+++ |+++|+||+|+
T Consensus 202 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~-~~~li~Deay~ 280 (500)
T 3tcm_A 202 HGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNE-GLVLLADEVYQ 280 (500)
T ss_dssp TTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTT
T ss_pred cCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEecCcc
Confidence 99999999999877889999999999975 788999999999999999999999999999999 99999999999
Q ss_pred ccccCCC-Ccccccc----CC--CCCCceEEEecccccc-ccccceeEEEEc---ChhHHHHHHhhhhccccCCChHHHH
Q 018665 154 HIIYAPA-THTSFAS----LP--GMWERTLTVNGFSKAF-AMTGWRLGYIAG---PKHFVAACNKIQSQFTSGASSISQK 222 (352)
Q Consensus 154 ~~~~~~~-~~~~~~~----~~--~~~~~~i~~~s~sK~~-g~~g~~~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (352)
.+.+++. ...++.. +. ....+++++.|+||.+ |++|+|+||+++ ++++++.+..... ...+++.+.|.
T Consensus 281 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~ 359 (500)
T 3tcm_A 281 ENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIAS-VNLCSNITGQI 359 (500)
T ss_dssp TCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHH-TTCCCCHHHHH
T ss_pred ccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHh-cccCCCHHHHH
Confidence 9888543 3444432 21 2234679999999999 889999999998 8899998887653 45678999999
Q ss_pred HHHHHhcccCC-------ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeec--CCccCC--cccCCCCC
Q 018665 223 AGVAALGLGYA-------GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF--STYYGS--EAEGFGKI 291 (352)
Q Consensus 223 ~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~--~~~~~~--~~~~~~~~ 291 (352)
++..++..... ...+.++++++++++++.+.+.|+++||+.+..+++++++|+++ |...-. ...+.
T Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~--- 436 (500)
T 3tcm_A 360 LASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANK--- 436 (500)
T ss_dssp HHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTS---
T ss_pred HHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCC---
Confidence 99998874210 12456777888999999999999999999999999999999654 321000 00000
Q ss_pred CChHHHHHHHHHccCEEeccCCCCCC---CCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 292 ENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 292 ~~~~~~~~~l~~~~gi~i~~g~~~~~---~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
.....++..++++.||.+.||+.|+. ..++|++++.+++++++++++|+++++++.
T Consensus 437 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~~~ 495 (500)
T 3tcm_A 437 APDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFM 495 (500)
T ss_dssp CHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 01233445666667999999999874 358999999988999999999999987764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=317.76 Aligned_cols=306 Identities=32% Similarity=0.549 Sum_probs=269.0
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|++..+..++| +.++++++ ++|+++++++|++++|+++++..++.+++++||+|+++.|+|.++...++..
T Consensus 60 ~~y~~~~~~~~l~------~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~ 133 (370)
T 2z61_A 60 THYTDSRGILELR------EKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFL 133 (370)
T ss_dssp CSCCCTTCCHHHH------HHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT
T ss_pred cCCCCCCCCHHHH------HHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc
Confidence 3577778899999 99999999 7888888999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++ +|+++|+++++++++++++++|+||||.++| .+ |.++|+++ |+++|+||+|+++.+++.
T Consensus 134 g~~~~~v~--------~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~---~~-l~~~~~~~-~~~li~De~~~~~~~~g~ 200 (370)
T 2z61_A 134 GAKPVFCD--------FTVESLEEALSDKTKAIIINSPSNPLGEVID---RE-IYEFAYEN-IPYIISDEIYNGLVYEGK 200 (370)
T ss_dssp TCEEEEEC--------SSHHHHHHHCCSSEEEEEEESSCTTTCCCCC---HH-HHHHHHHH-CSEEEEECTTTTCBSSSC
T ss_pred CCEEEEeC--------CCHHHHHHhcccCceEEEEcCCCCCcCcccC---HH-HHHHHHHc-CCEEEEEcchhhcccCCC
Confidence 99999887 5899999999888999999999999999999 44 99999999 999999999999877653
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcc-cCCChHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYAGGEVVS 239 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 239 (352)
+.++..+....++++++.|+||.+|++|+|+||+++++++++.+......+++++|++.+.++.++++. . .++++
T Consensus 201 -~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~ 276 (370)
T 2z61_A 201 -CYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKET---EREIN 276 (370)
T ss_dssp -CCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH---HHHHH
T ss_pred -CcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC---HHHHH
Confidence 345555543457899999999999989999999999999999988877666678999999998888863 2 46778
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
+.++.++++++.+.+.|+++ |+.+..+.+|+++|+++++ +..++.+.|.+++||.+.+|..|+.
T Consensus 277 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~gi~v~~g~~f~~~~ 342 (370)
T 2z61_A 277 SMIKEFDRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIGE-------------DGREFAYKLLKEKFVALTPGIGFGSKG 342 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCBCCCCCBTTEECCBCSS-------------CHHHHHHHHHHHHCEECEEGGGGCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCeecCCCcceEEEEecCC-------------CHHHHHHHHHHhCCEEEeCchhhCCCC
Confidence 88999999999999999988 8888888889999988864 4678889988555999999988864
Q ss_pred CCeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 318 DTCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 318 ~~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
++++|++++.+++++++++++|+++++
T Consensus 343 ~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 343 KNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp SSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999875
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-44 Score=328.83 Aligned_cols=321 Identities=21% Similarity=0.356 Sum_probs=277.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCC-CCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLS-YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~-~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|+++.+..++| +.+++++. ++|++ +++++|++++|+++++..++.++.++||+|+++.|+|.++...++..
T Consensus 80 ~y~~~~g~~~lr------~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~ 153 (425)
T 1vp4_A 80 QYSTTEGDPVLK------QQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQY 153 (425)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT
T ss_pred CCCCCCCCHHHH------HHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc
Confidence 577778999999 99999998 55876 77899999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccC--------CeeEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTE--------KSRLL-ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~--------~~~~i-~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
|.+++.++++.+ .+|+++|++++++ ++++| ++++|+||||.++|.+++++|+++|+++ |+++|+||+
T Consensus 154 g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~ 229 (425)
T 1vp4_A 154 LANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY-DLFIVEDDP 229 (425)
T ss_dssp TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred CCEEEEeccCCC---CCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEECC
Confidence 999999998742 3899999998875 78887 4789999999999999999999999999 999999999
Q ss_pred ccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhccc
Q 018665 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 231 (352)
|+++.+++....++..+.. .++++++.|+||.+| +|+|+||+++++++++.+......+++++|++.+.++.++++..
T Consensus 230 ~~~~~~~g~~~~~~~~~~~-~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~ 307 (425)
T 1vp4_A 230 YGALRYEGETVDPIFKIGG-PERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERY 307 (425)
T ss_dssp STTCBCSSCCCCCHHHHHC-TTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHS
T ss_pred CccccCCCCCCcCHHHhCC-CCCEEEEeccccccc-cccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcC
Confidence 9998887654455554432 468899999999999 99999999999999998887766666778999999999999863
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhccc-C---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 232 YAGGEVVSKMVKAFRERRDFLVKSFGEL-E---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
.. .+++++.++.++++++.+.+.|++. + ++.+..+.+|+++|+++++.. +..++.+.|.++ ||
T Consensus 308 ~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~-----------~~~~l~~~l~~~-gi 374 (425)
T 1vp4_A 308 DL-LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGF-----------DTWEMFEYAKRK-KV 374 (425)
T ss_dssp CH-HHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTC-----------CTTTTHHHHHHH-TE
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCC-----------CHHHHHHHHHHC-CC
Confidence 21 5678888899999999999999874 5 688887888999999997532 567788898887 99
Q ss_pred EeccCCCCC----CCCeEEEEeec-CHHHHHHHHHHHHHHHhhhCC
Q 018665 308 ALVPGDAFG----DDTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 308 ~i~~g~~~~----~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+.||..|+ .++++||+++. +++++++++++|+++++++..
T Consensus 375 ~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 375 FYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGK 420 (425)
T ss_dssp ECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999998775 35799999998 799999999999999987644
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=321.52 Aligned_cols=320 Identities=20% Similarity=0.335 Sum_probs=276.9
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
|+++.+..++| +.+++++. ++|+++++++|++|+|+++++..++.+++++||+|+++.|+|.++...++..|.
T Consensus 71 y~~~~~~~~l~------~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~ 144 (407)
T 2zc0_A 71 YTPANGIPELR------EELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGA 144 (407)
T ss_dssp CCCTTCCHHHH------HHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTC
T ss_pred CCCCCCCHHHH------HHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCC
Confidence 77778899999 99999998 678777889999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhcc----C--CeeEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLT----E--KSRLL-ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~----~--~~~~i-~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
+++.++.+.+ .+|+++|+++++ + ++++| ++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++
T Consensus 145 ~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~ 220 (407)
T 2zc0_A 145 KIEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKY-DLLIIEDTAYNFM 220 (407)
T ss_dssp EEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTS
T ss_pred EEEEcccCCC---CCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEECCCccc
Confidence 9999998642 389999999987 5 78887 4788999999999999999999999999 9999999999998
Q ss_pred ccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCCh
Q 018665 156 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
.+++....++..+.. .++++++.|+||.+| +|+|+||+++++++++.+......++.+++++.+.++.++++.... .
T Consensus 221 ~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 297 (407)
T 2zc0_A 221 RYEGGDIVPLKALDN-EGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF-E 297 (407)
T ss_dssp BSSCSSCCCGGGGCS-SCCEEEEEESTTTTC-TTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHH-H
T ss_pred ccCCCCCCChhhcCC-CCCEEEEcccccccC-CCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCc-h
Confidence 876654455555543 468899999999999 9999999999999999988877666777899999999999986211 3
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcc-cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 236 -EVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 236 -~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
+++++.++.++++++.+.+.|++ .+++.+..+.+++++|+++++.. +..++.+.|.+++||.+.+|.
T Consensus 298 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~ 366 (407)
T 2zc0_A 298 KYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGA-----------DGISFANELMEREGVVVVPGK 366 (407)
T ss_dssp HHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTTC-----------CHHHHHHHHHHHTCEECBCSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCCC-----------CHHHHHHHHHHhCCeEEECch
Confidence 55677888889999999999987 47788877888889999987532 688899999887799999998
Q ss_pred CCC----CCCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 314 AFG----DDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 314 ~~~----~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
.|. .++++||+++. +++++++++++|+++++++.
T Consensus 367 ~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 367 PFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp GGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHHHC
T ss_pred hccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHh
Confidence 775 35799999998 78999999999999998764
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=326.56 Aligned_cols=319 Identities=17% Similarity=0.178 Sum_probs=277.8
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCC--EEEecCCCCCChHHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGD--EVIIPAPFWVSYPEM 76 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~--~vl~~~~~~~~~~~~ 76 (352)
..|++..|..++| +.++++++ ++|+++++++|++|+|+++++..++.++. ++|| +|+++.|+|.++...
T Consensus 76 ~~y~~~~g~~~lr------~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~ 149 (437)
T 3g0t_A 76 SIYPNLDGLPELK------QEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQ 149 (437)
T ss_dssp GSCCCTTCCHHHH------HHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHH
T ss_pred cCCCCCCChHHHH------HHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHH
Confidence 4588888899999 99999999 88998899999999999999999999998 9999 999999999999999
Q ss_pred HHhcCCeEEEecccCCCCcccCHHHHHhhc-cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 77 ARIADATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 77 ~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l-~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
++..|.+++.++++ ++++.+|+++|++++ ++++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++
T Consensus 150 ~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~-~~~li~De~~~~~ 227 (437)
T 3g0t_A 150 CRILGQKFESFDLF-EYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKH-DVIVIEDLAYFGM 227 (437)
T ss_dssp HHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTC
T ss_pred HHHcCCEEEEEeec-CCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC-CcEEEEEcchhhc
Confidence 99999999999997 456678999999999 67899999999999999999999999999999999 9999999999987
Q ss_pred ccCCCCcc----cc-ccCCCCCCceEEEeccccccccccceeEEEEcChhHHH-H-----------------HHhhhhcc
Q 018665 156 IYAPATHT----SF-ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA-A-----------------CNKIQSQF 212 (352)
Q Consensus 156 ~~~~~~~~----~~-~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~-~-----------------~~~~~~~~ 212 (352)
.+.+.... ++ ..+....++++++.|+||.+|++|+|+||+++++++++ . +.......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (437)
T 3g0t_A 228 DFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYAL 307 (437)
T ss_dssp CTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHH
T ss_pred ccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhh
Confidence 77632211 11 33333367889999999999999999999999999988 7 76666656
Q ss_pred ccCCChHHHHHHHHHhcccCCChHH---HHHHHHHHHHHHHHHHHHhcccCCceec------CC-CCceEEEeecCCccC
Q 018665 213 TSGASSISQKAGVAALGLGYAGGEV---VSKMVKAFRERRDFLVKSFGELEGVKMS------EP-QGAFYLFIDFSTYYG 282 (352)
Q Consensus 213 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~g~~~~------~~-~~g~~~~~~~~~~~~ 282 (352)
+++++.+.+.++.++++.. ..+ +++.+++++++++.+.+.|+++ |+.+. .+ .+++++|+++++.
T Consensus 308 ~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 381 (437)
T 3g0t_A 308 SSGATHSAQWGMAAMLKAC---NDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGM-- 381 (437)
T ss_dssp HSSSCHHHHHHHHHHHHHH---HTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTC--
T ss_pred cCCCCHHHHHHHHHHHhCc---HhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCC--
Confidence 6789999999999999862 223 8889999999999999999998 88887 34 8899999998832
Q ss_pred CcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCC--CeEEEEeec-CHHHHHHHHHHHHHHHhh
Q 018665 283 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAA-SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~--~~iRi~~~~-~~~~l~~~~~~l~~~~~~ 345 (352)
+..++.+.|.++ ||.+.|+..|+.. +++||+++. +++++++++++|++++++
T Consensus 382 ----------~~~~l~~~L~~~-gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 382 ----------DSSKLIEKFVRY-GMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp ----------CHHHHHHHHHHT-TEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHc-CeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 788999999976 9999999877643 789999998 899999999999998764
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=327.03 Aligned_cols=314 Identities=24% Similarity=0.385 Sum_probs=271.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|++..|..++| +++++++. +|+.+++++|++++|+++++..+ .+++++||+|+++.|+|.++...++..|.
T Consensus 106 ~y~~~~g~~~lr------~~ia~~~~-~g~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~ 177 (449)
T 3qgu_A 106 GYGAEQGQGALR------EAVASTFY-GHAGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGM 177 (449)
T ss_dssp CSTTTTCCHHHH------HHHHHHHH-TTTTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHHTC
T ss_pred CCCCCCCcHHHH------HHHHHHHH-cCCCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHcCC
Confidence 577888999999 99999998 77778899999999999999988 88889999999999999999999999999
Q ss_pred e----------EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 83 T----------PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 83 ~----------v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
+ ++.++++.++++..|++++ +++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|
T Consensus 178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~-~~~li~Dea~ 251 (449)
T 3qgu_A 178 TGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN-GSILVYDAAY 251 (449)
T ss_dssp SCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTT
T ss_pred cccccccccceeEEEecccccCCcCChhHc-----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC-CcEEEEEcch
Confidence 8 9999987655555565432 5789999999999999999999999999999999 9999999999
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHH--------HHHhhhhccccCCChHHHHHH
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA--------ACNKIQSQFTSGASSISQKAG 224 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 224 (352)
+++.+++....++..+....++++++.|+||.+|++|+|+||+++++++++ .+.........+++++.+.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 331 (449)
T 3qgu_A 252 ALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGG 331 (449)
T ss_dssp GGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred HhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHH
Confidence 999887766667776665567889999999999999999999999988765 444444444557899999999
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 225 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
.+++... ..+++++.+++++++++++.+.|+++ |+.+..+.+++++|+.+++. ++.++++.|+++
T Consensus 332 ~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~ 396 (449)
T 3qgu_A 332 LACLQPE--GLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGDDAPYIWVGFPGK------------PSWDVFAEILER 396 (449)
T ss_dssp HHHTSHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESSSSSEEEEECTTS------------CHHHHHHHHHHH
T ss_pred HHHHhhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCeeEEEEECCCC------------CHHHHHHHHHHH
Confidence 9998741 13678888999999999999999988 89888888899999999832 788999999987
Q ss_pred cCEEeccCCCCCC--CCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 305 AQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 305 ~gi~i~~g~~~~~--~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
+||.+.||..|+. ++++||++..+++++++++++|++++++
T Consensus 397 ~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 397 CNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp HCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHC-
T ss_pred CCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 7999999988864 5899999888999999999999999864
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=316.47 Aligned_cols=313 Identities=28% Similarity=0.496 Sum_probs=265.6
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
..|++..+..++| +.++++++ .++++|++++|+++++..++.++.++||+|+++.|+|.++...++..|
T Consensus 55 ~~y~~~~~~~~l~------~~la~~~~-----~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g 123 (381)
T 1v2d_A 55 DQYAPPAGLPALR------EALAEEFA-----VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAG 123 (381)
T ss_dssp CSCCCTTCCHHHH------HHHHHHHT-----SCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT
T ss_pred cCCCCCCCCHHHH------HHHHHhcC-----CChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC
Confidence 4577777899999 99999986 667899999999999999999999999999999999999999999999
Q ss_pred CeEEEeccc--CCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 82 ATPVILPTR--ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 82 ~~v~~i~~~--~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.+++.++++ . .++.+|+++|++.++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+ +
T Consensus 124 ~~~~~v~~~~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~-g 200 (381)
T 1v2d_A 124 AKARLVRLDLTP-EGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISDEVYDELYY-G 200 (381)
T ss_dssp CEEEEEECEEET-TEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBS-S
T ss_pred CEEEEEeCCCCC-ccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHc-CCEEEEEcCcccccc-C
Confidence 999999986 2 2367899999999988899999999999999999999999999999999 999999999998876 4
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....++..+ ..++++++.|+||.+|++|+|+||+++++++++.+.......+++++++.+.++.++++.... .++++
T Consensus 201 ~~~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~ 277 (381)
T 1v2d_A 201 ERPRRLREF--APERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYE 277 (381)
T ss_dssp SCCCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHH
T ss_pred CCCCCHHHh--cCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCccc-HHHHH
Confidence 434444444 357889999999999989999999999999999888766655677899999999999875210 45678
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
+++++++++++++.+.|++. |+.+..+.+|+++|+++++. + +.+.|. ++||.+.+|..|+.
T Consensus 278 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------~---~~~~l~-~~gi~v~~g~~~~~~~ 340 (381)
T 1v2d_A 278 ALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW------------D---AFRLVE-EARVALIPASAFYLED 340 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC------------C---HHHHHH-HTCEECEEGGGGCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecChH------------h---HHHHHH-hCCEEEecchHhCCCC
Confidence 88999999999999999986 88888888888899988742 2 444444 56999999988763
Q ss_pred --CCeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 318 --DTCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 318 --~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
++++|++++.+++++++++++|++++++.+.
T Consensus 341 ~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 341 PPKDLFRFAFCKTEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp CCTTEEEEECCSCHHHHHHHHHHHHHHC-----
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHHHHhhccc
Confidence 6799999999999999999999999988765
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=310.42 Aligned_cols=298 Identities=21% Similarity=0.350 Sum_probs=253.9
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCC-CEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~-~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|++ .+..++| +++|++++ +++++|++++|+++++..++.+++++| |+|+++.|+|.++...++..
T Consensus 53 ~~Y~~-~~~~~lr------~~la~~~~-----~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~ 120 (356)
T 1fg7_A 53 NRYPE-CQPKAVI------ENYAQYAG-----VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI 120 (356)
T ss_dssp TSCCC-SSCHHHH------HHHHHHHT-----SCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHH
T ss_pred ccCCC-ccHHHHH------HHHHHHhC-----CChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHc
Confidence 45644 4588999 99999996 677899999999999999999999999 99999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++ .++.+|+++++++++ +++++++++||||||.++|.+++++|+++|+ + |+++|+||+|+++..
T Consensus 121 g~~~~~v~~~--~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~-~~~li~De~~~~~~~--- 192 (356)
T 1fg7_A 121 GVECRTVPTL--DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-G-KAIVVADEAYIEFCP--- 192 (356)
T ss_dssp TCEEEECCCC--TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-T-TCEEEEECTTGGGSG---
T ss_pred CCEEEEeeCC--CCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-C-CCEEEEEccchhhcC---
Confidence 9999999886 456789999999998 8999999999999999999999999999999 9 999999999998652
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHH--H
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV--V 238 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 238 (352)
..++..+...+++++++.|+||.+|++|+|+||+++++++++.+......+ ++|++.+.++.++++. ..+ +
T Consensus 193 -~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~a~~~~l~~----~~~~~~ 265 (356)
T 1fg7_A 193 -QASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY--PLSTPVADIAAQALSP----QGIVAM 265 (356)
T ss_dssp -GGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS--CSCHHHHHHHHHHTSH----HHHHHH
T ss_pred -CCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcC----ccHHHH
Confidence 133333333357899999999999999999999999999999888765444 6899999999999975 333 8
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc-CCCCCC
Q 018665 239 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAFGD 317 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~-g~~~~~ 317 (352)
++.+++++++++++.+.|++++++....+..++++|++++ ++.++.+.|.+ +||.+.+ |..|+.
T Consensus 266 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~L~~-~gI~v~~~g~~~~~ 330 (356)
T 1fg7_A 266 RERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--------------ASSAVFKSLWD-QGIILRDQNKQPSL 330 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--------------THHHHHHHHHH-TTEECEECTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC--------------CHHHHHHHHHH-CCEEEEECCCCCCC
Confidence 8889999999999999999885543445667888899875 46688888865 5999999 887777
Q ss_pred CCeEEEEeecCHHHHHHHHHHHHHH
Q 018665 318 DTCIRISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 318 ~~~iRi~~~~~~~~l~~~~~~l~~~ 342 (352)
++++||+++ +++|+++++++|+++
T Consensus 331 ~~~iRis~~-~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 331 SGCLRITVG-TREESQRVIDALRAE 354 (356)
T ss_dssp TTEEEEECC-CHHHHHHHHHHHHTC
T ss_pred CCeEEEEeC-CHHHHHHHHHHHHhh
Confidence 789999998 478999999988764
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=318.00 Aligned_cols=315 Identities=20% Similarity=0.374 Sum_probs=271.1
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+++.+..++| +.++++++ +++++|++++|+++++..++.++.++||+|+++.|+|.++...++..|.
T Consensus 69 ~y~~~~~~~~l~------~~la~~~g-----~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~ 137 (397)
T 2zyj_A 69 QYSPTEGYAPLR------AFVAEWIG-----VRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGP 137 (397)
T ss_dssp SCCCTTCCHHHH------HHHHHHHT-----SCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHH------HHHHHHhC-----CChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCC
Confidence 577778899999 99999995 6778999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccC-CeeEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTE-KSRLL-ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~-~~~~i-~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
+++.++.+.+ .+|+++|++++++ ++++| ++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++.
T Consensus 138 ~~~~~~~~~~---~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~ 213 (397)
T 2zyj_A 138 RFLTVPAGEE---GPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMER-GLVVVEDDAYRELYFGEA 213 (397)
T ss_dssp EEEEEEEETT---EECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCSSC
T ss_pred EEEecCcCCC---CCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEeCCcccccCCCC
Confidence 9999998642 3899999999975 78887 5789999999999999999999999999 999999999999887765
Q ss_pred CccccccCCCC--CCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHH
Q 018665 161 THTSFASLPGM--WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 238 (352)
Q Consensus 161 ~~~~~~~~~~~--~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (352)
...++..+..+ +++++++.|+||.+| +|+|+||+++++++++.+......+++++|++.+.++.++++... .+++
T Consensus 214 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~ 290 (397)
T 2zyj_A 214 RLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGF--SERL 290 (397)
T ss_dssp CCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTH--HHHH
T ss_pred CCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCC--HHHH
Confidence 44455444321 167899999999999 999999999999999988876666666789999999999998621 1568
Q ss_pred HHHHHHHHHHHHHHHHHhcc-cC-CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 239 SKMVKAFRERRDFLVKSFGE-LE-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~-~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
++.++.++++++.+.+.|++ +| |+.+..+.+|+++|++++... +..++.+.|.++ ||.+.+|..|+
T Consensus 291 ~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~l~~~-gi~v~~g~~f~ 358 (397)
T 2zyj_A 291 ERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGL-----------SAEGLFRRALEE-NVAFVPGGPFF 358 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTTC-----------CHHHHHHHHHHT-TEEEEESGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCCC-----------CHHHHHHHHHHC-CCEEechHHhc
Confidence 88888999999999999987 46 688887888999999987532 678899999987 99999998775
Q ss_pred ----CCCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 317 ----DDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 317 ----~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
.++++||+++. +++++++++++|+++++++.
T Consensus 359 ~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 359 ANGGGENTLRLSYATLDREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp TTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35799999998 79999999999999987653
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=311.65 Aligned_cols=302 Identities=20% Similarity=0.274 Sum_probs=260.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|++..+ .++| +.+|++++ +++++|++++|+++++..++.+++++||+|+++.|+|.++...++..|.
T Consensus 61 ~y~~~~~-~~lr------~~la~~~~-----~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~ 128 (365)
T 3get_A 61 LYPDDSM-IELK------STLAQKYK-----VQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGA 128 (365)
T ss_dssp SCCCTTC-HHHH------HHHHHHHT-----CCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHHTC
T ss_pred cCCCCCh-HHHH------HHHHHHhC-----CCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHHcCC
Confidence 4554444 8899 99999996 6789999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc--CCC
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY--APA 160 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~--~~~ 160 (352)
+++.+++ .+.++ +|++++++++++++++|++++|+||||.++|.+++++|+++| ++ |+++|+||+|+++.+ .+.
T Consensus 129 ~~~~v~~-~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~-~~~li~De~~~~~~~~~~~~ 204 (365)
T 3get_A 129 KCYKTQS-ITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGV-NE-DCLVVIDAAYNEFASFKDSK 204 (365)
T ss_dssp EEEECSS-SSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CT-TSEEEEECTTHHHHHHHCGG
T ss_pred EEEEEec-CCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CC-CcEEEEeCccHHHhcccCCc
Confidence 9999998 33567 999999999999999999999999999999988888888888 78 999999999998775 433
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
...+........++++++.|+||.+|++|+|+||+++++++++.+...... +++|.+.+.++.++++. .+++++
T Consensus 205 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~----~~~~~~ 278 (365)
T 3get_A 205 KHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAP--FNVSNLALKAAVAAMDD----DEFTEK 278 (365)
T ss_dssp GCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSCT--TCSCHHHHHHHHHHHTC----HHHHHH
T ss_pred ccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcCC--CCcCHHHHHHHHHHhCC----HHHHHH
Confidence 333333322235788999999999999999999999999999998876554 45999999999999985 688899
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCe
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 320 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~ 320 (352)
.+++++++++.+.+.|+++ ++.+..+.+ .++|+++++. +..++.+.|.++ ||.+.+|..|+ +++
T Consensus 279 ~~~~~~~~~~~l~~~l~~~-g~~~~~~~~-~~~~~~~~~~------------~~~~~~~~l~~~-gi~v~~g~~~~-~~~ 342 (365)
T 3get_A 279 TLENNFSQMELYKEFAKKH-NIKIIDSYT-NFITYFFDEK------------NSTDLSEKLLKK-GIIIRNLKSYG-LNA 342 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCEECCCSS-SEEEEECSSS------------CHHHHHHHHHTT-TEECEECGGGT-CSE
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEECCCCC-eEEEEECCCC------------CHHHHHHHHHHC-CEEEEECccCC-CCE
Confidence 9999999999999999988 888765554 5588998764 678899998875 99999999888 899
Q ss_pred EEEEeecCHHHHHHHHHHHHHHH
Q 018665 321 IRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
+|++++ ++++++++++.|++++
T Consensus 343 iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 343 IRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp EEEECC-CHHHHHHHHHHHHHHH
T ss_pred EEEEcC-CHHHHHHHHHHHHHHh
Confidence 999998 7899999999999876
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-42 Score=307.97 Aligned_cols=301 Identities=18% Similarity=0.248 Sum_probs=260.9
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEE
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~ 85 (352)
+..+..++| +.++++++ +++++|++++|+++++..++.++.++||+|+++.|+|.++...++..|.+++
T Consensus 49 ~~~~~~~l~------~~la~~~~-----~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~ 117 (354)
T 3ly1_A 49 AKNEILMLG------NKLAAHHQ-----VEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVT 117 (354)
T ss_dssp CHHHHHHHH------HHHHHHTT-----SCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEE
T ss_pred CCCchHHHH------HHHHHHhC-----CChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEE
Confidence 556778888 99999986 6789999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCcccCHHHHHhhcc--CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 86 ILPTRISENFLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~--~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
.++++. ++.+|+++|+++++ ++++++++++|+||||.++|.+++++|+++| ++ |+++|+||+|+++.+++....
T Consensus 118 ~~~~~~--~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~~-~~~li~De~~~~~~~~~~~~~ 193 (354)
T 3ly1_A 118 KVKMLD--NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASK-PA-NTMFIVDEAYAEFVNDPRFRS 193 (354)
T ss_dssp EECCCT--TSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTC-CT-TEEEEEECTTGGGCCCTTCCC
T ss_pred EecCCC--CCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CC-CeEEEEeccHHHhccccccCC
Confidence 999873 46799999999998 7899999999999999999999999999888 89 999999999998877654333
Q ss_pred ccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
.+.......++++++.|+||.+|++|+|+||+++++++++.+...... +++|++.+.++.++++. .+++++.++
T Consensus 194 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~----~~~~~~~~~ 267 (354)
T 3ly1_A 194 ISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG--EKINFSGVDAALASMND----SAFITYSKK 267 (354)
T ss_dssp SHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTTC--SCCCHHHHHHHHHHTTC----HHHHHHHHH
T ss_pred HHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcCC--CCCCHHHHHHHHHHhcC----HHHHHHHHH
Confidence 332222222788999999999999999999999999999998876654 57999999999999985 578899999
Q ss_pred HHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEE
Q 018665 244 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 323 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi 323 (352)
+++++++.+.+.|+++ ++.+.++ .|.++|++++. +..++.+.|.++ ||.+. |..++.++++||
T Consensus 268 ~~~~~~~~l~~~l~~~-~~~~~~~-~~~~~~~~~~~-------------~~~~~~~~l~~~-gi~v~-g~~~~~~~~iRi 330 (354)
T 3ly1_A 268 SNDVSRQILLKALEDL-KLPYLPS-EGNFVFHQLVV-------------PLKDYQTHMADA-GVLIG-RAFPPADNWCRI 330 (354)
T ss_dssp HHHHHHHHHHHHHHHH-TCCBCCC-CSSEEEEECSS-------------CHHHHHHHHHHT-TEECC-CCCTTCTTEEEE
T ss_pred HHHHHHHHHHHHHHHC-CCeECCC-CceEEEEECCC-------------CHHHHHHHHHHC-CEEEe-ecCCCCCCEEEE
Confidence 9999999999999988 8887754 55668898874 577899998865 99998 776667899999
Q ss_pred EeecCHHHHHHHHHHHHHHHhh
Q 018665 324 SYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 324 ~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
+++ ++++++++++.|++++++
T Consensus 331 s~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 331 SLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp ECC-CHHHHHHHHHHHHHHHHT
T ss_pred EcC-CHHHHHHHHHHHHHHHHh
Confidence 987 689999999999999875
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=316.05 Aligned_cols=315 Identities=14% Similarity=0.154 Sum_probs=264.7
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHH--HHHHHHhcC--C----------CCEEEecC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSI--LQAVLAVCS--P----------GDEVIIPA 67 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~--~~~~~~l~~--~----------~~~vl~~~ 67 (352)
..|++..|..++| +.+|++++ +++++|++|+|+++++ +.++.++.+ + ||+|++++
T Consensus 72 ~~Y~~~~g~~~lr------~~ia~~~~-----~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~ 140 (427)
T 3ppl_A 72 RNYGGLDGIVDIR------QIWADLLG-----VPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPV 140 (427)
T ss_dssp TSSCCSSCCHHHH------HHHHHHHT-----SCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEE
T ss_pred cCCCCCCCcHHHH------HHHHHHhC-----CCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcC
Confidence 4688889999999 99999996 7889999999999999 578888766 5 89999999
Q ss_pred CCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhcc-CCeeEEEEc-CCCCCcccCCCHHHHHHHHHHH-HhCCCE
Q 018665 68 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILC-SPSNPTGSVYPKNLLDEIARIV-AKHPRL 144 (352)
Q Consensus 68 ~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~-~~~~~i~i~-~p~nptG~~~~~~~l~~l~~~~-~~~~~~ 144 (352)
|+|..+...++..|.+++.++++.+ ++|+++|+++++ +++++|+++ +||||||.++|.+++++|+++| +++ |+
T Consensus 141 p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~-~~ 216 (427)
T 3ppl_A 141 PGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAP-DF 216 (427)
T ss_dssp SCCHHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST-TC
T ss_pred CCcHHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcC-CC
Confidence 9999999999999999999999753 389999999995 678888765 7899999999999999999999 999 99
Q ss_pred EEEecccccccccCCCCc--cccccC---CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChH
Q 018665 145 LVLSDEIYEHIIYAPATH--TSFASL---PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI 219 (352)
Q Consensus 145 ~livD~~~~~~~~~~~~~--~~~~~~---~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (352)
++|+||+|+++.+.+... .++..+ ....++++++.|+||. +++|+|+||+++++++++.+.........+++++
T Consensus 217 ~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~ 295 (427)
T 3ppl_A 217 RVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKV 295 (427)
T ss_dssp EEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHH
T ss_pred EEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-cCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHH
Confidence 999999999977765432 233332 1235789999999999 5699999999999999999988877777889999
Q ss_pred HHHHHHHHhcc-cCCChHHHHHHHHHHHHHHHHHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCCCh
Q 018665 220 SQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 294 (352)
Q Consensus 220 ~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 294 (352)
.|.++.++++. +.. ..++++.++.++++++.+.+.|.+ ++++.+..+++|+++|+++++. +.
T Consensus 296 ~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~------------~~ 362 (427)
T 3ppl_A 296 NQLAHARYFGDAEGV-RAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG------------TA 362 (427)
T ss_dssp HHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT------------CH
T ss_pred HHHHHHHHHhChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc------------hH
Confidence 99999999986 211 456777788888888888777754 3357778888999999999864 67
Q ss_pred HHHHHHHHHccCEEeccCC-CCC-----CCCeEEEEeec-CHHHHHHHHHHHHHHHhhh
Q 018665 295 ESLCRYLLDKAQVALVPGD-AFG-----DDTCIRISYAA-SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 295 ~~~~~~l~~~~gi~i~~g~-~~~-----~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~ 346 (352)
.++.+.|.++ ||.+.||+ .|. .++++||+++. +++++++++++|+++++++
T Consensus 363 ~~~~~~l~~~-gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 363 SRVAELAKEA-GIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp HHHHHHHHHT-TEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 7888877755 99999944 443 35799999988 8999999999999998765
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=305.56 Aligned_cols=300 Identities=19% Similarity=0.269 Sum_probs=257.9
Q ss_pred CCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeE
Q 018665 5 RVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 84 (352)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v 84 (352)
+++.+..++| +.++++++ +++++|++++|+++++..++.+++++||+|+++.|+|.++...++..|.++
T Consensus 64 y~~~~~~~lr------~~la~~~~-----~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~ 132 (363)
T 3ffh_A 64 YPDGWASSLR------KEVADFYQ-----LEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEV 132 (363)
T ss_dssp C----CHHHH------HHHHHHHT-----CCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEE
T ss_pred CCCcchHHHH------HHHHHHhC-----CChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHcCCEE
Confidence 3667889999 99999997 678999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 85 VILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 85 ~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
+.+++++ ++.+|+++++++++++++++++++|+||||.++|.+++.+|++.|+ . |+++|+||+|+++.+ +.. .+
T Consensus 133 ~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~-~-~~~li~De~~~~~~~-~~~-~~ 206 (363)
T 3ffh_A 133 REIPLLQ--DGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVP-S-DVLVVLDEAYIEYVT-PQP-EK 206 (363)
T ss_dssp EEEECCT--TSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSC-T-TSEEEEECTTGGGCS-SCC-CC
T ss_pred EEecCCC--CCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCC-C-CcEEEEeCchHhhcC-ccc-cC
Confidence 9999874 5679999999999989999999999999999999777777777664 3 799999999998876 432 23
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
........++++++.|+||.+|++|+|+||+++++++++.+..... ++++|.+.+.++.++++. .+++++.+++
T Consensus 207 ~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~----~~~~~~~~~~ 280 (363)
T 3ffh_A 207 HEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP--PFNTTSIGQKLAIEAIKD----QAFIGECRTS 280 (363)
T ss_dssp CGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC--SCCCBHHHHHHHHHHHHC----HHHHHHHHHH
T ss_pred HHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCC--CCCCCHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 3333333678999999999999999999999999999999887654 456999999999999985 6888999999
Q ss_pred HHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEE
Q 018665 245 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324 (352)
Q Consensus 245 ~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~ 324 (352)
++++++++.+.|++++++.+..+. +.++|++++. +..++.+.|.++ ||.+.+|..|+.++++|++
T Consensus 281 ~~~~~~~l~~~l~~~~g~~~~~~~-~~~~~~~~~~-------------~~~~~~~~l~~~-gi~v~~g~~~~~~~~iRis 345 (363)
T 3ffh_A 281 NANGIKQYEAFAKRFEKVKLYPAN-GNFVLIDLGI-------------EAGTIFSYLEKN-GYITRSGAALGFPTAVRIT 345 (363)
T ss_dssp HHHHHHHHHHHHHHCTTCEECCCC-SSEEEEECSS-------------CHHHHHHHHHHT-TEECEETTTTTCTTEEEEE
T ss_pred HHHHHHHHHHHHhhCCCceECCCC-CeEEEEECCC-------------CHHHHHHHHHHC-CeEEEeCccCCCCCeEEEE
Confidence 999999999999986688887544 5568888874 678899998875 9999999998888999999
Q ss_pred eecCHHHHHHHHHHHHHHH
Q 018665 325 YAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 325 ~~~~~~~l~~~~~~l~~~~ 343 (352)
++ +++|++++++.|++++
T Consensus 346 ~~-~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 346 IG-KEEDNSAVIALLEKLL 363 (363)
T ss_dssp CC-CHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHhC
Confidence 98 7899999999998763
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=314.05 Aligned_cols=314 Identities=24% Similarity=0.397 Sum_probs=264.1
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|++..+..+++ +++++++. .++.+++++|++++|+++++.. +..++++||.|+++.|+|.++...++..|.
T Consensus 93 ~y~~~~g~~~l~------~~ia~~~~-~~~~~~~~~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~ 164 (432)
T 3ei9_A 93 GYGAEQGAKPLR------AAIAKTFY-GGLGIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQ 164 (432)
T ss_dssp CCCCTTCCHHHH------HHHHHHHH-TTTTCCGGGEEEESCHHHHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHHHTC
T ss_pred CCCCCCCCHHHH------HHHHHHHH-ccCCCCcceEEECCChHHHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHHcCC
Confidence 477788999999 99999997 3556788999999999999986 577788999999999999999999888773
Q ss_pred ------------eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecc
Q 018665 83 ------------TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150 (352)
Q Consensus 83 ------------~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~ 150 (352)
+++.++++.++++..|+++ .++++++++++|+||||.+++.+++++|+++|+++ |+++|+||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~-~~~li~De 238 (432)
T 3ei9_A 165 TGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN-GSIIVYDS 238 (432)
T ss_dssp SCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEC
T ss_pred cccccccccccCceEEeccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEcc
Confidence 6788888754454455443 35789999999999999999999999999999999 99999999
Q ss_pred cccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhH--------HHHHHhhhhccccCCChHHHH
Q 018665 151 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF--------VAACNKIQSQFTSGASSISQK 222 (352)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 222 (352)
+|+++.+++. ..++..+....++++++.|+||.+|++|+|+||+++++++ ++.+.........+++++.+.
T Consensus 239 a~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (432)
T 3ei9_A 239 AYAMYMSDDN-PRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQA 317 (432)
T ss_dssp TTGGGCCSSC-CSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHH
T ss_pred chHhhccCCC-CCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHH
Confidence 9999877653 3455555444578899999999999999999999999887 677776655555678999999
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHH
Q 018665 223 AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 302 (352)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 302 (352)
++.+++... ..+++++++++++++++++.+.|+++ |+.+..+..++++|+++++. +..++.+.|+
T Consensus 318 a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ll 382 (432)
T 3ei9_A 318 GALACLTPE--GLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWVHFPNQ------------SSWDVFAEIL 382 (432)
T ss_dssp HHHHHSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECSSSSEEEEECTTS------------CHHHHHHHHH
T ss_pred HHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEEECCCC------------CHHHHHHHHH
Confidence 988888641 13678889999999999999999988 88888778888999999843 7888889888
Q ss_pred HccCEEeccCCCCCC--CCeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 303 DKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 303 ~~~gi~i~~g~~~~~--~~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
+++||.+.||..|+. ++++||++..+++++++++++|++-.+..
T Consensus 383 ~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl~~~~~~~ 428 (432)
T 3ei9_A 383 EKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLYKHH 428 (432)
T ss_dssp HHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHHHHHhhhc
Confidence 777999999998874 68999999889999999999999876543
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-42 Score=314.92 Aligned_cols=315 Identities=14% Similarity=0.161 Sum_probs=258.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHH--HHHHHHhcCC------------CCEEEecCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSI--LQAVLAVCSP------------GDEVIIPAP 68 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~--~~~~~~l~~~------------~~~vl~~~~ 68 (352)
.|+++.|..++| +++|++++ +++++|++|+|+++++ ..++.++..+ +++|++++|
T Consensus 71 ~Y~~~~G~~~lr------~~ia~~~~-----~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p 139 (422)
T 3d6k_A 71 NYGGLLGIADIR------ELWAEALG-----LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVP 139 (422)
T ss_dssp SSCCSSCCHHHH------HHHHHHHT-----CCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEES
T ss_pred CCCCCCCCHHHH------HHHHHHhC-----CChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCC
Confidence 588888999999 99999996 7789999999999987 6666777654 347999999
Q ss_pred CCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccC-CeeEEE-EcCCCCCcccCCCHHHHHHHHHHHH-hCCCEE
Q 018665 69 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVA-KHPRLL 145 (352)
Q Consensus 69 ~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~-~~~~i~-i~~p~nptG~~~~~~~l~~l~~~~~-~~~~~~ 145 (352)
+|..+...++..|.+++.++++.+ ++|+++|++.+++ ++++++ +++||||||.++|.+++++|+++|+ ++ |++
T Consensus 140 ~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~-~~~ 215 (422)
T 3d6k_A 140 GYDRHFTITEHFGFEMINVPMTDE---GPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAP-DFR 215 (422)
T ss_dssp CCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST-TCE
T ss_pred ccHHHHHHHHHcCCEEEecCCCCC---CCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhcc-CCE
Confidence 999999999999999999998743 3899999999975 788888 6899999999999999999999999 99 999
Q ss_pred EEecccccc--cccCCCCccccccC---CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHH
Q 018665 146 VLSDEIYEH--IIYAPATHTSFASL---PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSIS 220 (352)
Q Consensus 146 livD~~~~~--~~~~~~~~~~~~~~---~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (352)
+|+||+|+. +.+++....++..+ ....++++++.|+||. +++|+|+||+++++++++.+......++++++.+.
T Consensus 216 li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~~~~ 294 (422)
T 3d6k_A 216 IVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASSKENIEWYASHANVRGIGPNKLN 294 (422)
T ss_dssp EEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHH
T ss_pred EEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeCHHHHHHHHHHHHhhcCCCCHHH
Confidence 999999985 43333223344221 1235789999999999 56999999999999999999887777777899999
Q ss_pred HHHHHHHhcc-cCCChHHHHHHHHHHHHHHHHHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCCChH
Q 018665 221 QKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 295 (352)
Q Consensus 221 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (352)
|.++.++++. +.. .+++++.++.++++++.+.+.|++ ++++.+..|++|+++|+++++. +..
T Consensus 295 q~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~------------~~~ 361 (422)
T 3d6k_A 295 QLAHAQFFGDVAGL-KAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG------------TAS 361 (422)
T ss_dssp HHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT------------CHH
T ss_pred HHHHHHHHhCcchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC------------CHH
Confidence 9999999985 211 366778888888888888887764 3346777888999999999753 466
Q ss_pred HHHHHHHHccCEEeccC-CCCC-----CCCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 296 SLCRYLLDKAQVALVPG-DAFG-----DDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 296 ~~~~~l~~~~gi~i~~g-~~~~-----~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
.+.+.|.+ .||.+.|| ..|. .++++||+++. +++++++++++|+++++++.
T Consensus 362 ~~~~~l~~-~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 419 (422)
T 3d6k_A 362 RVVELAKE-AGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLMAA 419 (422)
T ss_dssp HHHHHHHH-TTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77776665 59999994 4452 35799999995 99999999999999987653
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=313.53 Aligned_cols=311 Identities=12% Similarity=0.110 Sum_probs=250.2
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCc--EEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQ--ILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEM 76 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~--i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~ 76 (352)
..|++..|.+++| +++++++. +.+..+++++ +++|+|+++|+..++.++.+ + |+|++++|+|..|...
T Consensus 66 ~~Y~~~~G~~~lr------~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~ 138 (405)
T 3k7y_A 66 KPYLLGNGTEDFS------TLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNM 138 (405)
T ss_dssp CCCCTTSSCHHHH------HHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHH
T ss_pred CCCCCCCCcHHHH------HHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHH
Confidence 3599999999999 99999998 6666666664 69999999999999999877 8 9999999999999999
Q ss_pred HHhcCCeEEEecccCCCCcccCHHHHHhhccC--CeeEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc
Q 018665 77 ARIADATPVILPTRISENFLLDPKVLESKLTE--KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153 (352)
Q Consensus 77 ~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~--~~~~i~i~~p-~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~ 153 (352)
++..|.+++.+++..++++.+|++.+++.+++ +++++++++| |||||.+++.+++++|+++|+++ |+++|+||+|.
T Consensus 139 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~-~~~vi~De~Y~ 217 (405)
T 3k7y_A 139 IESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHK-KHVIIFDIAYQ 217 (405)
T ss_dssp HHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-CCEEEEEESCT
T ss_pred HHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CeEEEEecCcc
Confidence 99999999999985445688999999999863 5577777665 89999999999999999999999 99999999999
Q ss_pred ccccCCCC--ccccccCCCCCCceEEEeccccccccccceeEEEEc---ChhHHHHHH----hhhhccccCCChHHHHHH
Q 018665 154 HIIYAPAT--HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACN----KIQSQFTSGASSISQKAG 224 (352)
Q Consensus 154 ~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 224 (352)
++.+++.. ..++..+....++++++.|+||.+|++|+|+||+++ ++++++.+. ........+++.+.|.++
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~ 297 (405)
T 3k7y_A 218 GFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRIL 297 (405)
T ss_dssp TTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred cccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 98775321 122333222357899999999999999999999863 666665543 222333345678889888
Q ss_pred HHHhcccCCCh---HHHHHHHHHHHHHHHHHHHHhc----ccC---CceecCCCCceEEEeecCCccCCcccCCCCCCCh
Q 018665 225 VAALGLGYAGG---EVVSKMVKAFRERRDFLVKSFG----ELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 294 (352)
Q Consensus 225 ~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~----~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 294 (352)
..++....... +.+++.++.++++++.+.+.|+ ++. ++.+..+++|+|+|+.++.
T Consensus 298 ~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~--------------- 362 (405)
T 3k7y_A 298 CQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA--------------- 362 (405)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG---------------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH---------------
Confidence 88887621112 3355666779999999999998 762 2788899999999988753
Q ss_pred HHHHHHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHhh
Q 018665 295 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 295 ~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~ 345 (352)
+++++| +++||.+.||+ |||++. +++++++++++|++++++
T Consensus 363 -~~~~~L-~~~gV~v~p~~--------Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 363 -KIAEHL-KTHHIYIINNG--------RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp -GGTTTT-TTTTEECCTTS--------EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred -HHHHHH-HHCCEeecCCC--------eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 223566 56799999964 999987 889999999999999875
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=310.45 Aligned_cols=315 Identities=16% Similarity=0.218 Sum_probs=259.8
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++..|..++| +.+++++. ..+.+ .+++|++|+|+++++..++.+++++||+|+++.|+|.++...++..|
T Consensus 75 ~y~~~~g~~~lr------~~ia~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g 147 (418)
T 3rq1_A 75 GYAPIAGIPDFL------CAAEKECFGNFRPE-GHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTG 147 (418)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTT
T ss_pred CCCCCCChHHHH------HHHHHHHhcccCcc-ccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcC
Confidence 588889999999 99999997 44432 23499999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccC----Cee-EEEEcCC-CCCcccCCCHHHHHHHHHHHH------hCCCEEEEec
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTE----KSR-LLILCSP-SNPTGSVYPKNLLDEIARIVA------KHPRLLVLSD 149 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~----~~~-~i~i~~p-~nptG~~~~~~~l~~l~~~~~------~~~~~~livD 149 (352)
.+++.++++.++ +.+|++.|++.+++ +++ ++++++| |||||.++|.+++++|+++|+ ++ |+++|+|
T Consensus 148 ~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~-~~~li~D 225 (418)
T 3rq1_A 148 RTLVTYSLFDEH-NNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN-NVIIGID 225 (418)
T ss_dssp CEEEEECSBCTT-SSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC-EEEEEEE
T ss_pred CEEEEEeeeCCC-CCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC-CeEEEEe
Confidence 999999986433 67899999999874 555 7888999 999999999999999999999 89 9999999
Q ss_pred ccccccccCCCCcccccc-CCCCCCc--eEEEeccccccccccceeEEEEc---ChhHHHHHHhhhhcc----ccCCChH
Q 018665 150 EIYEHIIYAPATHTSFAS-LPGMWER--TLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACNKIQSQF----TSGASSI 219 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~-~~~~~~~--~i~~~s~sK~~g~~g~~~g~l~~---~~~~~~~~~~~~~~~----~~~~~~~ 219 (352)
|+|.++.+++....++.. .....++ ++++.|+||.+|++|+|+||+++ ++++++.+....... ..+++.+
T Consensus 226 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (418)
T 3rq1_A 226 VAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRP 305 (418)
T ss_dssp CTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHH
T ss_pred cccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchH
Confidence 999988766543333332 2222344 58899999999999999999998 899998887654322 2358889
Q ss_pred HHHHHHHHhcccCC---ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHH
Q 018665 220 SQKAGVAALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 296 (352)
Q Consensus 220 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
.+.++.++++.... ..+..+++++.++++++.+.+.|+++ |+.+..+++++++|++++ +..+
T Consensus 306 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--------------~~~~ 370 (418)
T 3rq1_A 306 AMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPYRGGFFITIPTD--------------SANA 370 (418)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCCSSSEEEEECT--------------THHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCceEEEEcCCC--------------CHHH
Confidence 99999999876210 01233466778899999999999988 899988999999998764 6778
Q ss_pred HHHHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 297 LCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 297 ~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
+.+.|.+ +||.+.|| ++++||+++. +++++++++++|+++++++.
T Consensus 371 ~~~~l~~-~gi~v~~g-----~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 371 ICEELKK-EHIYVIAL-----ANGIRIAACGIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp HHHHHHH-TTEECEEC-----SSEEEEEGGGSCHHHHTTHHHHHHHHHHHTT
T ss_pred HHHHHHh-CCEEEecC-----CCCeEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 8887765 59999997 5689999986 99999999999999998765
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-42 Score=312.54 Aligned_cols=313 Identities=27% Similarity=0.414 Sum_probs=250.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+++.|..++| +++++++. +|+ +++++|++++|+++++..+.. ++++||+|+++.|+|.++...++..|.
T Consensus 70 ~y~~~~g~~~lr------~~la~~l~-~g~-~~~~~v~~~~G~~~al~~~~~-~~~~gd~Vl~~~p~y~~~~~~~~~~g~ 140 (400)
T 3asa_A 70 GYGPDFGLPALR------QKLSEDFY-RGF-VDAKEIFISDGAKVDLFRLLS-FFGPNQTVAIQDPSYPAYLDIARLTGA 140 (400)
T ss_dssp CCCCTTCCHHHH------HHHHHTTS-TTS-SCGGGEEEESCHHHHHHHHHH-HHCSSCEEEEEESCCHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHH------HHHHHHHH-cCC-CCHHHEEEccChHHHHHHHHH-HcCCCCEEEECCCCcHHHHHHHHHcCC
Confidence 477788999999 99999964 444 578899999999999998654 457889999999999999999999999
Q ss_pred e-EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 83 T-PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 83 ~-v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+ ++.++++.++++..|+++ + +++++|++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++..
T Consensus 141 ~~~~~~~~~~~~~~~~~l~~----~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~ 214 (400)
T 3asa_A 141 KEIIALPCLQENAFFPEFPE----D-THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH-EILILFDAAYSTFISDPSL 214 (400)
T ss_dssp SEEEEEECCGGGTTCCCCCT----T-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGCCCTTS
T ss_pred cceEecccchhcCcccChhh----c-cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEchhhhhhcCCCC
Confidence 9 999998754444444332 1 5788999999999999999999999999999999 9999999999988776544
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhH-------HHHHHhhhhccc-cCCChHHHHHHHHHhcccCC
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-------VAACNKIQSQFT-SGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 233 (352)
..++..+....++++++.|+||.+|++|+|+||+++++++ ++.+........ .++|.+.+.++.++++..
T Consensus 215 ~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-- 292 (400)
T 3asa_A 215 PKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-- 292 (400)
T ss_dssp CSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT--
T ss_pred CCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH--
Confidence 4455554432467899999999999999999999999888 666643322222 368999999999998752
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEee-cCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID-FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
++++.++.++++++.+.+.|+++ |+.+..+.+++++|++ ++... ++.++.+.|++++||.+.||
T Consensus 293 ---~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gv~v~~g 357 (400)
T 3asa_A 293 ---PQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKPTQANI-----------SDRDLFDFFLREYHIAITPG 357 (400)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEECCCTTC-----------CTTTHHHHHHHHHSEECEEG
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEeccCCCC-----------CHHHHHHHHHHhCCEEEeCh
Confidence 56677888999999999999987 8888877788889999 77532 55678888886679999999
Q ss_pred CCCC--CCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 313 DAFG--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 313 ~~~~--~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
..|+ .++++||++..+++++++++++|++++++..
T Consensus 358 ~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~ 394 (400)
T 3asa_A 358 IGFGRSGSGFVRFSSLGKREDILAACERLQMAPALQS 394 (400)
T ss_dssp GGGCGGGTTCEEEECCSCHHHHHHHHHHHHC------
T ss_pred hHhCCCCCCEEEEEeeCCHHHHHHHHHHHHHHHHhhh
Confidence 8875 3578999976699999999999999987654
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=296.56 Aligned_cols=298 Identities=17% Similarity=0.242 Sum_probs=256.1
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEE
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~ 85 (352)
++.+..++| +.++++++ +++++|++++|+++++..++.++ |+|+++.|+|.++...++..|.+++
T Consensus 59 ~~~~~~~l~------~~la~~~~-----~~~~~i~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~ 123 (361)
T 3ftb_A 59 PDVNYRRLN------KSIENYLK-----LKDIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKHGVSVV 123 (361)
T ss_dssp CCTTCHHHH------HHHHHHHT-----CCSCEEEEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHHHHHTTCEEE
T ss_pred CCccHHHHH------HHHHHHhC-----CCcceEEEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHHHHHcCCeEE
Confidence 567889999 99999996 67899999999999999999888 8999999999999999999999999
Q ss_pred EecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 86 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
.++++.+.+ .+++++++++++ ++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.++ ...+.
T Consensus 124 ~~~~~~~~~--~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~--~~~~~ 197 (361)
T 3ftb_A 124 FSYLDENMC--IDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEK-KKTIIIDEAFIEFTGD--PSSSF 197 (361)
T ss_dssp EEECCTTSC--CCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHH-TCEEEEECSSGGGTCC--TTSSS
T ss_pred EeecCcccC--CCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhc-CCEEEEECcchhhcCC--cccch
Confidence 999875444 678999999987 99999999999999999999999999999999 9999999999988775 22344
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEE-cChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
.......++++++.|+||.+|++|+|+||++ .++++++.+...... +++|++.+.++.++++. .+++++.+++
T Consensus 198 ~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~----~~~~~~~~~~ 271 (361)
T 3ftb_A 198 VGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNP--WNINCFAEMAAINCLKD----TNYIEESLLW 271 (361)
T ss_dssp GGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCT--TCSCHHHHHHHHHTSSC----HHHHHHHHHH
T ss_pred hHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCC--CCCCHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 4444446788999999999999999999998 899999998876543 46999999999999985 6888999999
Q ss_pred HHHHHHHHHHHhcccCCce-ecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--CCeE
Q 018665 245 FRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCI 321 (352)
Q Consensus 245 ~~~~~~~l~~~l~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~~~i 321 (352)
++++++.+.+.|++++++. +..+. |.++++++++. +..++.+.|.++ ||.+.+|..|+. ++++
T Consensus 272 ~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~------------~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~i 337 (361)
T 3ftb_A 272 IKKERKRFIEELNKIGFIKRVFSPH-ANFVLCRLENI------------SGEKLYDSLLKE-DIVIRRCCNFIGLDDSFV 337 (361)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEECCS-SSEEEEEESSS------------CHHHHHHHHHTT-TEECEECTTSTTCCTTEE
T ss_pred HHHHHHHHHHHHHhCCCCceecCCC-CeEEEEEcCCC------------CHHHHHHHHHHC-CeEEeeCccCCCCCCCEE
Confidence 9999999999999988888 66555 45577888763 788999999876 999999988754 5799
Q ss_pred EEEeecCHHHHHHHHHHHHHHHhh
Q 018665 322 RISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
|++++ +.++++++++.|+++.+.
T Consensus 338 Ris~~-~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 338 RFAIK-DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp EEECC-CHHHHHHHHHHHHHHHHT
T ss_pred EEEcC-CHHHHHHHHHHHHHHHhc
Confidence 99998 556777777777776653
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=298.26 Aligned_cols=303 Identities=18% Similarity=0.249 Sum_probs=250.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.| ++.+..++| +.++++++ +++++|++++|+++++..++.++ ++|+|+++.|+|.++...++..|.
T Consensus 55 ~y-~~~~~~~l~------~~la~~~~-----~~~~~v~~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~ 120 (364)
T 1lc5_A 55 RY-PDADYFHLH------QALARHHQ-----VPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQSGC 120 (364)
T ss_dssp SC-CCTTCHHHH------HHHHHHHT-----SCGGGEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHHTTC
T ss_pred cC-CCCCHHHHH------HHHHHHHC-----cCHHHEEECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHHHcCC
Confidence 46 446789999 99999996 66789999999999999999998 579999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++.++++.+ ++++.+.++++++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++
T Consensus 121 ~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~--- 195 (364)
T 1lc5_A 121 EIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSL-NINLILDEAFIDFIPHE--- 195 (364)
T ss_dssp EEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGSTTC---
T ss_pred eEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhc-CcEEEEECcChhhccCc---
Confidence 999999875334333 5666666767889999999999999999999999999999999 99999999999877643
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEE-cChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
.++.......++++++.|+||.+|++|+|+||++ +++++++.+..... ++++|++.+.++.++++. .+++++.
T Consensus 196 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~----~~~~~~~ 269 (364)
T 1lc5_A 196 TGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM--PWSVNALAALAGEVALQD----SAWQQAT 269 (364)
T ss_dssp CCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC--TTCSCHHHHHHHHHGGGC----HHHHHHH
T ss_pred cchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCC--CCCCCHHHHHHHHHHHhC----cHHHHHH
Confidence 2222222335788999999999998999999999 99999998877654 456899999999999986 5788899
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--CC
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DT 319 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~~ 319 (352)
++.++++++.+.+.|+++|++.+.. ..|.++|+++++ +..++.+.|.++ ||.+.+|..|.. ++
T Consensus 270 ~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~~~~~-------------~~~~l~~~l~~~-gi~v~~g~~~~~~~~~ 334 (364)
T 1lc5_A 270 WHWLREEGARFYQALCQLPLLTVYP-GRANYLLLRCER-------------EDIDLQRRLLTQ-RILIRSCANYPGLDSR 334 (364)
T ss_dssp HHHHHHHHHHHHHHHHTSTTEEECC-CSSSEEEEEESC-------------TTCCHHHHHHTT-TEECEECTTSTTCCTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCEECC-CCCeEEEEECCC-------------cHHHHHHHHHHC-CcEEeeCcccCCCCCC
Confidence 9999999999999999888888765 455667888763 344677888865 999999987753 57
Q ss_pred eEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 320 CIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 320 ~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
++||+++. .++++++++.|+++++++
T Consensus 335 ~iRis~~~-~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 335 YYRVAIRS-AAQNERLLAALRNVLTGI 360 (364)
T ss_dssp EEEEECCC-HHHHHHHHHHHHHHC---
T ss_pred EEEEEeCC-HHHHHHHHHHHHHHhhcc
Confidence 99999874 678899999999887765
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-41 Score=308.38 Aligned_cols=316 Identities=14% Similarity=0.183 Sum_probs=261.6
Q ss_pred Ccc-CCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHH--HHHHHhcC--C---------CCEEEecC
Q 018665 2 QFV-RVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSIL--QAVLAVCS--P---------GDEVIIPA 67 (352)
Q Consensus 2 ~~y-~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~--~~~~~l~~--~---------~~~vl~~~ 67 (352)
..| +++.|..++| +.+|++++ +++++|++|+|+++++. .++.++++ + +|+|+++.
T Consensus 63 ~~Yp~~~~g~~~lr------~~ia~~~~-----~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~ 131 (423)
T 3ez1_A 63 RNYPGGVAGLPSAR------ALFAGYLD-----VKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTV 131 (423)
T ss_dssp TSSCSCTTCCHHHH------HHHHHHTT-----SCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEE
T ss_pred hCCCCCCCChHHHH------HHHHHHhC-----CChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcC
Confidence 457 8889999999 99999996 77899999999999997 88888877 6 59999999
Q ss_pred CCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhc--cCCeeEEEE-cCCCCCcccCCCHHHHHHHHHHH-HhCCC
Q 018665 68 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLLIL-CSPSNPTGSVYPKNLLDEIARIV-AKHPR 143 (352)
Q Consensus 68 ~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l--~~~~~~i~i-~~p~nptG~~~~~~~l~~l~~~~-~~~~~ 143 (352)
|+|..+...++..|.+++.++++.+ ++|+++|++++ ++++++|++ ++||||||.++|.+++++|+++| +++ |
T Consensus 132 p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~-~ 207 (423)
T 3ez1_A 132 PGYDRHFLLLQTLGFELLTVDMQSD---GPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAP-D 207 (423)
T ss_dssp SCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSST-T
T ss_pred CCcHHHHHHHHHcCCEEEeccCCCC---CCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhcc-C
Confidence 9999999999999999999998753 48999999999 568888875 58899999999999999999999 999 9
Q ss_pred EEEEecccccccccCC-C--CccccccC---CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCC
Q 018665 144 LLVLSDEIYEHIIYAP-A--THTSFASL---PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 217 (352)
Q Consensus 144 ~~livD~~~~~~~~~~-~--~~~~~~~~---~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 217 (352)
+++|+||+|+.+.+.+ . ...++..+ ....++++++.|+||. +++|+|+||+++++++++.+.......+.+++
T Consensus 208 ~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~ 286 (423)
T 3ez1_A 208 FTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKI-TFAGAGLGFVASSEDNIRWLSKYLGAQSIGPN 286 (423)
T ss_dssp CEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSSSSCEEEEECHHHHHHHHHHHHHSCSCCC
T ss_pred CEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhh-ccCCcceEEEEeCHHHHHHHHHHHhhhccCCC
Confidence 9999999999655543 1 22233332 1235789999999999 45999999999999999999888777778899
Q ss_pred hHHHHHHHHHhcc--cCCChHHHHHHHHHHHHHHHHHHHHhcc----cC-CceecCCCCceEEEeecCCccCCcccCCCC
Q 018665 218 SISQKAGVAALGL--GYAGGEVVSKMVKAFRERRDFLVKSFGE----LE-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 290 (352)
Q Consensus 218 ~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 290 (352)
++.+.++.++++. ... .+++++.++.++++++.+.+.|.+ ++ ++.+..+.+|+++|+++++.
T Consensus 287 ~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~---------- 355 (423)
T 3ez1_A 287 KVEQARHVKFLTEYPGGL-EGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP---------- 355 (423)
T ss_dssp HHHHHHHHHHHHHSTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS----------
T ss_pred HHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC----------
Confidence 9999999999885 222 456677777777777777666654 42 37777888999999999864
Q ss_pred CCChHHHHHHHHHccCEEecc-CCCCC-----CCCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 291 IENSESLCRYLLDKAQVALVP-GDAFG-----DDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 291 ~~~~~~~~~~l~~~~gi~i~~-g~~~~-----~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
+...+.+.|.++ ||.+.| |..|. .++++||+++. +++++++++++|+++++++.
T Consensus 356 --~~~~~~~~l~~~-gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 356 --VADRVVKLAEAA-GVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp --CHHHHHHHHHHT-TEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHC-CcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 677788777754 999999 55554 25799999987 99999999999999998654
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=306.72 Aligned_cols=318 Identities=19% Similarity=0.315 Sum_probs=255.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC-----EEEec-CCCCCChHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD-----EVIIP-APFWVSYPE 75 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~-----~vl~~-~~~~~~~~~ 75 (352)
.|+++.|..++| +.+|+++. ++|+.+++++|++|+|++++++.++.+++++|| +|+++ .|+|..+..
T Consensus 70 ~y~~~~g~~~lr------~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~ 143 (417)
T 3g7q_A 70 NYDGPQGKTALL------NALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYAD 143 (417)
T ss_dssp STTCTTSHHHHH------HHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC
T ss_pred ccCCCCCcHHHH------HHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchh
Confidence 588899999999 99999998 889889999999999999999999999998877 89997 999998876
Q ss_pred HHHh------cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEec
Q 018665 76 MARI------ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 76 ~~~~------~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD 149 (352)
.+.. .+..+..++.+ ..++.+|++.|+ ++++++++++++||||||.++|.+++++|+++|+++ |+++|+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~-~~~li~D 219 (417)
T 3g7q_A 144 SGLEDDLFVSARPNIELLPEG-QFKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQH-NIPLVID 219 (417)
T ss_dssp -----CCEEECCCEEEEEGGG-EEEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCCEEEE
T ss_pred hccchhhhccccCcccccCCc-ccccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHc-CCEEEEe
Confidence 6532 23444444432 124568999988 677899999999999999999999999999999999 9999999
Q ss_pred ccccccccCCCCccccccC-CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHh
Q 018665 150 EIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAAL 228 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 228 (352)
|+|+.+.. + ..+... +...++++++.|+|| ++++|+|+||+++++++++.+......++.+++++.+.++.+++
T Consensus 220 e~~~~~~~-~---~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (417)
T 3g7q_A 220 NAYGVPFP-G---IIFSEARPLWNPNIILCMSLSK-LGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMI 294 (417)
T ss_dssp CTTCTTTT-C---CBCSCCCCCCCTTEEEEEESGG-GTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHH
T ss_pred CCCccccc-c---ccccccccCCCCCEEEEEechh-ccCCCcceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHH
Confidence 99975321 1 111111 122578899999999 57799999999999999999988877777889999999999999
Q ss_pred cccCCChHHHHH-HHHHHHHHHHHHHHHhcc-cC--CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 229 GLGYAGGEVVSK-MVKAFRERRDFLVKSFGE-LE--GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 229 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~-~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
+.... .....+ +++.++++++.+.+.|++ ++ ++.+..+.+|+++|++++... .+..++.+.|.++
T Consensus 295 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~l~~~l~~~ 363 (417)
T 3g7q_A 295 KRNDL-LRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLP----------ITTELLYQRLKAR 363 (417)
T ss_dssp HTTCH-HHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCS----------SCHHHHHHHHHHT
T ss_pred cCcch-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCC----------CCHHHHHHHHHHC
Confidence 86432 233333 667788888888888776 34 477888899999999998621 1788999988754
Q ss_pred cCEEeccCCCCCC---------CCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 305 AQVALVPGDAFGD---------DTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 305 ~gi~i~~g~~~~~---------~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
||.+.||..|+. ++++||+++.+++++++++++|+++++++.
T Consensus 364 -gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~~ 414 (417)
T 3g7q_A 364 -GVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEIERAW 414 (417)
T ss_dssp -TEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -CEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 999999988754 469999999999999999999999998764
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=315.56 Aligned_cols=331 Identities=21% Similarity=0.279 Sum_probs=265.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-h-cC-CCCC-CCcEEEeCChHHHHHHHHHH-----hcCCCCEEEecCCCCCCh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-E-NG-LSYT-PDQILVSNGAKQSILQAVLA-----VCSPGDEVIIPAPFWVSY 73 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~-~~-~~~~-~~~i~~~~g~~~a~~~~~~~-----l~~~~~~vl~~~~~~~~~ 73 (352)
||.+..|..++| +.+++++. + .+ +.+. +++|++|+|+++++..++.+ ++++||+|+++.|+|.++
T Consensus 133 y~~~~~g~~~lr------~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~ 206 (533)
T 3f6t_A 133 YPVPDRCLVNTE------KIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPY 206 (533)
T ss_dssp CCSSSSCCHHHH------HHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHH
T ss_pred CCCCcccHHHHH------HHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHH
Confidence 455888999999 99999998 4 34 4544 47999999999999999998 788999999999999999
Q ss_pred HHHHHhcCCeEEEecccC--CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHH-hCCCEEEEecc
Q 018665 74 PEMARIADATPVILPTRI--SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA-KHPRLLVLSDE 150 (352)
Q Consensus 74 ~~~~~~~g~~v~~i~~~~--~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~-~~~~~~livD~ 150 (352)
...++..|.+++.++++. +.++.+|+++|++++++++++|++++|+||||.++|.+++++|+++|+ ++ |+++|+||
T Consensus 207 ~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~-~~~li~De 285 (533)
T 3f6t_A 207 LRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNP-KLMIISDE 285 (533)
T ss_dssp HTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCT-TCEEEEEC
T ss_pred HHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCC-CCEEEEcC
Confidence 999999999999999875 566889999999999999999999999999999999999999999999 69 99999999
Q ss_pred cccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChh-----HHHH---------------------
Q 018665 151 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-----FVAA--------------------- 204 (352)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-----~~~~--------------------- 204 (352)
+|+++.++. .++.... .++++++.|+||.+|++|+|+||++++++ +++.
T Consensus 286 ~y~~~~~~~---~~~~~~~--~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~ 360 (533)
T 3f6t_A 286 VYGAFVPNF---KSIYSVV--PYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPD 360 (533)
T ss_dssp TTGGGSTTC---CCHHHHS--GGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGG
T ss_pred CccccccCc---cCHhhcC--CCCEEEEecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcc
Confidence 999876542 3333322 37889999999999999999999998776 3322
Q ss_pred -----------HHhhhhccccCCChHHHHH----HHHHhccc---CCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC
Q 018665 205 -----------CNKIQSQFTSGASSISQKA----GVAALGLG---YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266 (352)
Q Consensus 205 -----------~~~~~~~~~~~~~~~~~~~----~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~ 266 (352)
+.......+.+++.+.|.+ +..++... .....+++++++.++++++.+.+.|. + ++.+..
T Consensus 361 ~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~ 438 (533)
T 3f6t_A 361 KMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-PKDETD 438 (533)
T ss_dssp GCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCST
T ss_pred hhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C-CccccC
Confidence 2333444556788888887 44555310 01257889999999999999999998 6 788888
Q ss_pred CCCceEEEeecCCccCCcccC----CC-CCCChHHHHHHHHHccCEEeccCCCCCC-CCeEEEEeec-CHHHHHHHHHHH
Q 018665 267 PQGAFYLFIDFSTYYGSEAEG----FG-KIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAA-SLTTLQAAVERI 339 (352)
Q Consensus 267 ~~~g~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~l~~~~gi~i~~g~~~~~-~~~iRi~~~~-~~~~l~~~~~~l 339 (352)
+.+++|+|++++......... +. ...++.+++.++++++||.+.||+.|+. ++++|+|++. +++++++++++|
T Consensus 439 ~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L 518 (533)
T 3f6t_A 439 TNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQV 518 (533)
T ss_dssp TBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHH
T ss_pred CCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHH
Confidence 899999999886411000000 00 0005667777888777999999998875 5799999996 999999999999
Q ss_pred HHHHhhhC
Q 018665 340 KKGLLTLR 347 (352)
Q Consensus 340 ~~~~~~~~ 347 (352)
+++++++.
T Consensus 519 ~~~l~~~~ 526 (533)
T 3f6t_A 519 LELLKEYY 526 (533)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=306.64 Aligned_cols=323 Identities=17% Similarity=0.243 Sum_probs=262.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC--------------EEEec-
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD--------------EVIIP- 66 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~--------------~vl~~- 66 (352)
.|++..|..++| +.+|+++. ++|+.+++++|++|+|++++++.++.+++++|| +|+++
T Consensus 78 ~y~~~~g~~~lr------~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~ 151 (444)
T 3if2_A 78 NYSNPQGDSAFI------DALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPL 151 (444)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESS
T ss_pred ccCCCCCCHHHH------HHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeC
Confidence 478888999999 99999998 889889999999999999999999999988887 78876
Q ss_pred CCCCCChHH------HHHhcCCeEEEecccCCC---CcccCHHHHHhh---ccCCeeEEEEcCCCCCcccCCCHHHHHHH
Q 018665 67 APFWVSYPE------MARIADATPVILPTRISE---NFLLDPKVLESK---LTEKSRLLILCSPSNPTGSVYPKNLLDEI 134 (352)
Q Consensus 67 ~~~~~~~~~------~~~~~g~~v~~i~~~~~~---~~~~d~~~l~~~---l~~~~~~i~i~~p~nptG~~~~~~~l~~l 134 (352)
.|+|..+.. .+...|..++.++++.++ ++.+|++.|+++ +++++++|++++|+||||.++|.+++++|
T Consensus 152 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i 231 (444)
T 3if2_A 152 TPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHL 231 (444)
T ss_dssp SSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred CCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHH
Confidence 899998876 345678888888876421 357899999998 67789999999999999999999999999
Q ss_pred HHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcccc
Q 018665 135 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 214 (352)
Q Consensus 135 ~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~ 214 (352)
+++|+++ |+++|+||+|+.+.. +...... .....++++++.|+||. +++|+|+||+++++++++.+.......++
T Consensus 232 ~~~a~~~-~~~li~De~~~~~~~-~~~~~~~--~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~ 306 (444)
T 3if2_A 232 AEIAKRY-DIPLIIDNAYGMPFP-NIIYSDA--HLNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVNL 306 (444)
T ss_dssp HHHHHHT-TCCEEEECTTCTTTT-CCBCSCC--CCCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHC-CCEEEEECCCCCccc-ccccccc--cccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhccC
Confidence 9999999 999999999975321 1100111 11225788999999997 67999999999999999999887777777
Q ss_pred CCChHHHHHHHHHhcccCCChHHHHH-HHHHHHHHHHHHHHHhcc-cC--CceecCCCCceEEEeecCCccCCcccCCCC
Q 018665 215 GASSISQKAGVAALGLGYAGGEVVSK-MVKAFRERRDFLVKSFGE-LE--GVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 290 (352)
Q Consensus 215 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~-~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 290 (352)
+++++.+.++..+++.... .....+ +++.++++++.+.+.|.+ ++ ++.+..+.+|+++|+.++...
T Consensus 307 ~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~--------- 376 (444)
T 3if2_A 307 APTRFGAAIATPLVANDRI-KQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP--------- 376 (444)
T ss_dssp SCCCHHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS---------
T ss_pred CCChHHHHHHHHHHHcCch-hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC---------
Confidence 8999999999999986322 222333 566777888888777765 34 467777888999999988521
Q ss_pred CCChHHHHHHHHHccCEEeccCCCCCCC----------CeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 291 IENSESLCRYLLDKAQVALVPGDAFGDD----------TCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 291 ~~~~~~~~~~l~~~~gi~i~~g~~~~~~----------~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+..++.+.|.++ ||.+.||+.|... +++||+++.+++++++++++|+++++++..
T Consensus 377 -~~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 377 -ISTLDLYERLKAK-GTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp -SCHHHHHHHHHHT-TEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHC-CeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHc
Confidence 1788899988755 9999999887532 589999999999999999999999987653
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=291.61 Aligned_cols=300 Identities=20% Similarity=0.302 Sum_probs=253.1
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++..+ .++| +.+++++. ++|+.+++++|++++|+++++..++.++.++||+|+++.|+|.++...++..|
T Consensus 65 ~y~~~~~-~~l~------~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g 137 (369)
T 3cq5_A 65 RYPERDA-VELR------DELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTH 137 (369)
T ss_dssp SCCCTTC-HHHH------HHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHHHTT
T ss_pred cCCCccH-HHHH------HHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcC
Confidence 4654444 7899 99999998 77777788999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
.+++.++.+ .++.+|++++++++++ ++++|++++|+||||.++| ++++.++|+.+ ++++|+||+|+++.+.
T Consensus 138 ~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---~~~l~~l~~~~-~~~li~De~~~~~~~~-- 209 (369)
T 3cq5_A 138 TEFIAVSRG--ADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTS---LDDVERIINVA-PGIVIVDEAYAEFSPS-- 209 (369)
T ss_dssp CEEEEEECC--TTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCC---HHHHHHHHHHC-SSEEEEECTTGGGCCS--
T ss_pred CEEEEecCC--cCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCC---HHHHHHHHHhC-CCEEEEECCchhhcCC--
Confidence 999999965 4467899999999987 8899999999999999999 66777777788 8999999999987643
Q ss_pred CccccccCCCCCC-ceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 161 THTSFASLPGMWE-RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 161 ~~~~~~~~~~~~~-~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
.+........+ +++++.|+||.+|++|+|+||+++++++++.+...... +++|++.+.++.++++. .++++
T Consensus 210 --~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~a~~~~l~~----~~~~~ 281 (369)
T 3cq5_A 210 --PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLP--YHLSALSQAAAIVALRH----SADTL 281 (369)
T ss_dssp --CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSCT--TCSCHHHHHHHHHHHHT----HHHHH
T ss_pred --cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCCC--CCCCHHHHHHHHHHhcC----HHHHH
Confidence 23333322345 88999999999998999999999999999888776543 45899999999999985 56788
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
+.+++++++++.+.+.|++. |+.+.+ ..|.++|++++ . +..++.+.|.++ ||.+.+| +.++
T Consensus 282 ~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~-~------------~~~~l~~~l~~~-gi~v~~~---~~~~ 342 (369)
T 3cq5_A 282 GTVEKLSVERVRVAARLEEL-GYAVVP-SESNFVFFGDF-S------------DQHAAWQAFLDR-GVLIRDV---GIAG 342 (369)
T ss_dssp THHHHHHHHHHHHHHHHHHH-TCEEEC-CSSSEEEEECC-S------------SHHHHHHHHHHT-TEECBCC---SCTT
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCEECC-CCCeEEEEECC-C------------CHHHHHHHHHHC-CEEEEEC---CCCC
Confidence 88999999999999999885 888874 45667888876 2 678899988754 9999997 2468
Q ss_pred eEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 320 CIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 320 ~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
++|++++ +++|++++++.|+++++.
T Consensus 343 ~iRis~~-~~~~i~~~~~~l~~~~~~ 367 (369)
T 3cq5_A 343 HLRTTIG-VPEENDAFLDAAAEIIKL 367 (369)
T ss_dssp EEEEECC-CHHHHHHHHHHHHHHHTT
T ss_pred eEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence 9999998 789999999999998753
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=294.88 Aligned_cols=297 Identities=23% Similarity=0.369 Sum_probs=255.7
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCC-CCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeE
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSY-TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 84 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~-~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v 84 (352)
++.+..++| +.++++++ . ++++|++|+|+++++..++.+++++||+|+++.|+|.++...++..|.++
T Consensus 65 ~~~~~~~l~------~~la~~~g-----~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~ 133 (367)
T 3euc_A 65 PVPSSEALR------AKLKEVMQ-----VPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEF 133 (367)
T ss_dssp CCCCHHHHH------HHHHHHHT-----CCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHTTTCEE
T ss_pred CCCcHHHHH------HHHHHHhC-----CCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeE
Confidence 346788999 99999996 4 67899999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-CEEEEecccccccccCCCCc
Q 018665 85 VILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-RLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 85 ~~i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~-~~~livD~~~~~~~~~~~~~ 162 (352)
+.++++. ++.+|+++|++++++ ++++|++++|+||||.++|.+++++|+++|++++ |+++|+||+|+++...+ .
T Consensus 134 ~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~--~ 209 (367)
T 3euc_A 134 VGVPLRA--DFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES--W 209 (367)
T ss_dssp EEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC--S
T ss_pred EEecCCC--CCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc--h
Confidence 9999874 567899999999987 8999999999999999999999999999999873 59999999999865322 1
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
.+ .. ...++++++.|+||. +++|+|+||+++++++++.+..... .+++|++.+.++.++++. .+++++.+
T Consensus 210 ~~--~~-~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~----~~~~~~~~ 279 (367)
T 3euc_A 210 MS--RL-TDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKVRP--PYNVNVLTEATALFALEH----VAVLDEQA 279 (367)
T ss_dssp GG--GG-GTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGGCC--SSCCCHHHHHHHHHHHTT----HHHHHHHH
T ss_pred HH--HH-hhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHhCC--CCCCCHHHHHHHHHHhcC----HHHHHHHH
Confidence 11 11 235788999999999 8899999999999999998877654 356999999999999986 67789999
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC--CCCe
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTC 320 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~--~~~~ 320 (352)
++++++++++.+.|+++||+.+. +..++++|++++ +..++.+.|.+ .||.+.+|..|+ .+++
T Consensus 280 ~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~--------------~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~ 343 (367)
T 3euc_A 280 AQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP--------------DAAQTFDRLLA-RKVLIKNVSKMHPLLANC 343 (367)
T ss_dssp HHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS--------------CHHHHHHHHHT-TTEECEECGGGCGGGTTE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--------------CHHHHHHHHHH-CCeEEEECCccCCCCCCE
Confidence 99999999999999998899854 556677888876 46788888765 499999988764 3689
Q ss_pred EEEEeecCHHHHHHHHHHHHHHHh
Q 018665 321 IRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
+|++++ ++++++++++.|+++++
T Consensus 344 iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 344 LRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp EEEECC-CHHHHHHHHHHHHHHTC
T ss_pred EEEecC-CHHHHHHHHHHHHHHhc
Confidence 999988 78999999999998874
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=304.16 Aligned_cols=310 Identities=15% Similarity=0.114 Sum_probs=250.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEE--eCChHHHHHHHHHHhc---CCCCEEEecCCCCCChHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILV--SNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPEM 76 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~--~~g~~~a~~~~~~~l~---~~~~~vl~~~~~~~~~~~~ 76 (352)
.|.+..|.+++| ++++++++ ++|+.+++++|++ |+|+++++..++..+. ++||+|+++.|+|..+...
T Consensus 66 ~Y~~~~g~~~lr------~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~ 139 (401)
T 7aat_A 66 EYLPIAGLADFT------RASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPI 139 (401)
T ss_dssp CCCCTTCCHHHH------HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHH
T ss_pred CCCCCCCCHHHH------HHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHH
Confidence 477888999999 99999999 7787777999987 9999999998887654 8899999999999999999
Q ss_pred HHhcCCeEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc
Q 018665 77 ARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153 (352)
Q Consensus 77 ~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~ 153 (352)
++..|.+++.++++...++.+|++.+++.++ ++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|.
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~Deay~ 218 (401)
T 7aat_A 140 FRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR-NLLAYFDMAYQ 218 (401)
T ss_dssp HHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCT
T ss_pred HHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEccccc
Confidence 9999999999998755567899997666664 5788999999999999999999999999999999 99999999999
Q ss_pred ccccCCC--CccccccCCCCCCceEEEeccccccccccceeEEEEc---Chh----HHHHHHhhhhccccCCChHHHHHH
Q 018665 154 HIIYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAG 224 (352)
Q Consensus 154 ~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 224 (352)
++.+.+. ...++..+....++++++.|+||.+|++|+|+||+++ +++ +...+......+..+++...+.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (401)
T 7aat_A 219 GFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIA 298 (401)
T ss_dssp TTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred cccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 8877542 1122222222357889999999999999999999886 555 445555555555666777888888
Q ss_pred HHHhcccCCC---hHHHHHHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHH
Q 018665 225 VAALGLGYAG---GEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLC 298 (352)
Q Consensus 225 ~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
..++..+... .+++++.+++++++++++.+.|+++ +++.+..+++++++|+.+ +.+.+
T Consensus 299 ~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~- 362 (401)
T 7aat_A 299 SLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL---------------KPEQV- 362 (401)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCC---------------CHHHH-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCC---------------CHHHH-
Confidence 7777652110 3457778889999999999999876 247777889999998764 33334
Q ss_pred HHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHH
Q 018665 299 RYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGL 343 (352)
Q Consensus 299 ~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~ 343 (352)
..+++++||.+.++ +|++++. ++++++++++.|++++
T Consensus 363 ~~ll~~~gi~v~~~--------~Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 363 ERLTKEFSIYMTKD--------GRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHhCCEeccCC--------CeEEeccCChhhHHHHHHHHHHHh
Confidence 56665669999764 5999987 7777999999999876
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-44 Score=326.46 Aligned_cols=315 Identities=24% Similarity=0.392 Sum_probs=269.3
Q ss_pred ChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEec
Q 018665 10 TLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 88 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~ 88 (352)
..++| +.+++++. .+|+++++++|++++|+++++..++.++.++||+|+++.|+|.++...++..|.+++.++
T Consensus 68 ~~~l~------~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~ 141 (392)
T 3b1d_A 68 SDELL------QAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNS 141 (392)
Confidence 77888 99999998 778777889999999999999999999999999999999999999999999999999999
Q ss_pred ccCC-CCcccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccc
Q 018665 89 TRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 89 ~~~~-~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
++.+ +++.+|++++++.++ .+++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++.+++....++.
T Consensus 142 ~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~ 220 (392)
T 3b1d_A 142 LKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKH-HVILVSDEIHQDLTLFGHEHVSFN 220 (392)
Confidence 8533 346789999999997 6788999999999999999999999999999999 999999999999888765555665
Q ss_pred cCCCC-CCceEEEeccccccccccceeEEEEcCh-hHHHHHHhhhhccc-cCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 167 SLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFT-SGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 167 ~~~~~-~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
.+..+ .++++++.|+||.+|++|+|+||+++++ ++++.+......++ .+++++.+.++.++++. ..+++++.++
T Consensus 221 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~ 297 (392)
T 3b1d_A 221 TVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRY---GKPWLVALKA 297 (392)
Confidence 55432 5788999999999998999999999875 48888877665554 35688899988888875 2567888899
Q ss_pred HHHHHHHHHHHHhcc-cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC--CCCe
Q 018665 244 AFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTC 320 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~--~~~~ 320 (352)
.++++++.+.+.|++ +|++.+..+.+++++|++++... .+..++.+.|++++||.+.||..|+ .+++
T Consensus 298 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~ 367 (392)
T 3b1d_A 298 VLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYG----------LTDDALFTLLHDQAKVILNRGSDYGSEGELH 367 (392)
Confidence 999999999999988 78898888899998899887520 1566788888755699999998886 3579
Q ss_pred EEEEeecCHHHHHHHHHHHHHHHh
Q 018665 321 IRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
+||+++.+++++++++++|+++++
T Consensus 368 iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 368 ARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 999999988999999999998875
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=305.88 Aligned_cols=310 Identities=16% Similarity=0.149 Sum_probs=252.5
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC--cEEEeCChHHHHHHHH--HHhcCCCCEEEecCCCCCChHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD--QILVSNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~--~i~~~~g~~~a~~~~~--~~l~~~~~~vl~~~~~~~~~~~~~ 77 (352)
.|++..|..++| +.+++++. ..+..++++ +|++|+|+++++..++ .+++++||+|++++|+|.++...+
T Consensus 87 ~Y~~~~g~~~lr------~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~ 160 (420)
T 4f4e_A 87 GYLPIDGIAAYD------ASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALF 160 (420)
T ss_dssp CCCCTTCCHHHH------HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH
T ss_pred CCCCCCCcHHHH------HHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHH
Confidence 488889999999 99999998 444444677 8999999999999994 456789999999999999999999
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+..|.+++.++...+.++.+|++.+++.++ ++++++++++|+||||.+++.+++++|+++|+++ |+++|+||+|++
T Consensus 161 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~y~~ 239 (420)
T 4f4e_A 161 DMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKAR-RLVPFLDIAYQG 239 (420)
T ss_dssp HHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTT
T ss_pred HHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CcEEEEcccccc
Confidence 999999999998544567899999999997 5788999999999999999999999999999999 999999999999
Q ss_pred cccCCC-CccccccCCCCCCceEEEeccccccccccceeEEEEc---ChhHHHHH----HhhhhccccCCChHHHHHHHH
Q 018665 155 IIYAPA-THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKHFVAAC----NKIQSQFTSGASSISQKAGVA 226 (352)
Q Consensus 155 ~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 226 (352)
+.+++. ...++..+....++++++.|+||.+|++|+|+||+++ ++++++.+ .........+++.+.+.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (420)
T 4f4e_A 240 FGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAA 319 (420)
T ss_dssp SSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHH
T ss_pred ccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 887642 2334444433457899999999999999999999863 55655443 333333445678889988888
Q ss_pred HhcccCC---ChHHHHHHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHH
Q 018665 227 ALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 227 ~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
++..... ..+++++++++++++++.+.+.|+++ +++.+..+++|+++|+.+ +.+.+.+.
T Consensus 320 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~---------------~~~~~~~~ 384 (420)
T 4f4e_A 320 VLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGL---------------TSAQVDRL 384 (420)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCC---------------CHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCC---------------CHHHHHHH
Confidence 8876211 03557888899999999999999986 478888889999999775 33455444
Q ss_pred HHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHH
Q 018665 301 LLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGL 343 (352)
Q Consensus 301 l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~ 343 (352)
+. ++||.+.|+. |++++. +++++++++++|++++
T Consensus 385 l~-~~gI~v~~~~--------Ris~~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 385 RE-EFGIYAVSTG--------RICVAALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp HH-HHCEECCTTS--------EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HH-hCCEEecCCC--------eEEEecCCHHHHHHHHHHHHHHh
Confidence 44 4599998853 999987 8888999999999886
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=307.68 Aligned_cols=329 Identities=22% Similarity=0.306 Sum_probs=253.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH--hcCCCC---CCCcEEEeCChHHHHHHHHHH-----hcCCCCEEEecCCCCC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK--ENGLSY---TPDQILVSNGAKQSILQAVLA-----VCSPGDEVIIPAPFWV 71 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~--~~~~~~---~~~~i~~~~g~~~a~~~~~~~-----l~~~~~~vl~~~~~~~ 71 (352)
..|+++.|..++| +.+++++. +.+... ++++|++|+|+++++..++.+ ++++||+|++++|+|.
T Consensus 132 ~~Y~~~~g~~~lr------~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~ 205 (546)
T 2zy4_A 132 CNYPVPPRMLNIS------EKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFT 205 (546)
T ss_dssp CSCCSSSSCCHHH------HHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCH
T ss_pred CCCCCCcCCHHHH------HHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCc
Confidence 3588888999999 99888765 433322 468999999999999999987 5789999999999999
Q ss_pred ChHHHHH--hcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHH--HhCCCEEEE
Q 018665 72 SYPEMAR--IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AKHPRLLVL 147 (352)
Q Consensus 72 ~~~~~~~--~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~--~~~~~~~li 147 (352)
.+...+. ..|.+++.++.+++++|.+|+++|++.++++++++++++||||||.+++.+++++|+++| +++ |++||
T Consensus 206 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~-~~~ii 284 (546)
T 2zy4_A 206 PYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRP-DLMIL 284 (546)
T ss_dssp HHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCT-TCEEE
T ss_pred cHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccC-CcEEE
Confidence 9998755 357889999988767788999999998888899999999999999999999999999999 788 99999
Q ss_pred ecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChh-HHHHHHhh-------------h----
Q 018665 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKI-------------Q---- 209 (352)
Q Consensus 148 vD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~~~~~~~-------------~---- 209 (352)
+||+|+++.+. ..++.... .++++++.|+||.+|++|+|+||++++++ +++.+... .
T Consensus 285 ~De~y~~~~~~---~~s~~~~~--~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~ 359 (546)
T 2zy4_A 285 TDDVYGTFADD---FQSLFAIC--PENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLP 359 (546)
T ss_dssp EECTTGGGSTT---CCCHHHHC--GGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCS
T ss_pred EeCcchhhccc---CcCHHHhC--CCCEEEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccc
Confidence 99999987643 23443332 36899999999999999999999998875 77766321 0
Q ss_pred -------------------hccccCCChHHHHHH-----HHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceec
Q 018665 210 -------------------SQFTSGASSISQKAG-----VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 265 (352)
Q Consensus 210 -------------------~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 265 (352)
...+.+.+.+.|.++ .+.++. .+.+.+++++.++++++.+.+.|. . ++.+.
T Consensus 360 ~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~---~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~ 434 (546)
T 2zy4_A 360 DVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDE---ADEYKHTLKQLIRRRETTLYRELG-M-PPLRD 434 (546)
T ss_dssp CGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCC
T ss_pred cccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcC-C-CcccC
Confidence 122346777877764 234443 257788899999999999999996 4 56666
Q ss_pred CCCCceEEEeecCCcc----CCcccCCC-CCCChHHHHHHHHHccCEEeccCCCCCC-CCeEEEEeec-CHHHHHHHHHH
Q 018665 266 EPQGAFYLFIDFSTYY----GSEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAA-SLTTLQAAVER 338 (352)
Q Consensus 266 ~~~~g~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~l~~~~gi~i~~g~~~~~-~~~iRi~~~~-~~~~l~~~~~~ 338 (352)
.+.+++++|++++... +..+..|- ...+..++..+++++.||.+.||..|+. ++++||+++. +++++++++++
T Consensus 435 ~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~ 514 (546)
T 2zy4_A 435 ENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRA 514 (546)
T ss_dssp TTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHH
T ss_pred CCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 7789999999986310 00000000 0002334344445556999999999875 4689999998 88999999999
Q ss_pred HHHHHhhhC
Q 018665 339 IKKGLLTLR 347 (352)
Q Consensus 339 l~~~~~~~~ 347 (352)
|+++++++.
T Consensus 515 l~~~l~~~~ 523 (546)
T 2zy4_A 515 LRKMADELY 523 (546)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=300.53 Aligned_cols=310 Identities=16% Similarity=0.131 Sum_probs=251.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC--cEEEeCChHHHHHHHH--HHhcCCCCEEEecCCCCCChHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD--QILVSNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~--~i~~~~g~~~a~~~~~--~~l~~~~~~vl~~~~~~~~~~~~~ 77 (352)
.|++..|..++| +.+++++. ..+..++++ +|++|+|+++++..++ .+++++||+|+++.|+|.++...+
T Consensus 65 ~y~~~~g~~~lr------~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~ 138 (397)
T 3fsl_A 65 LYLPMEGLNCYR------HAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIF 138 (397)
T ss_dssp CCCCTTCCHHHH------HHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHH
T ss_pred cCCCCCchHHHH------HHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHH
Confidence 577888999999 99999998 444444678 9999999999999985 456789999999999999999999
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+..|.+++.+++..+.++.+|+++|++.++ ++++++++++|+||||.+++.+++++|+++|+++ |+++|+||+|++
T Consensus 139 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~ 217 (397)
T 3fsl_A 139 AGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR-ELIPFLDIAYQG 217 (397)
T ss_dssp HHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred HHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhC-CEEEEEecCchh
Confidence 999999999998544567899999999997 5778889999999999999999999999999999 999999999999
Q ss_pred cccCCC-CccccccCCCCCCceEEEeccccccccccceeEEEEc---ChhHHHHHHhh----hhccccCCChHHHHHHHH
Q 018665 155 IIYAPA-THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACNKI----QSQFTSGASSISQKAGVA 226 (352)
Q Consensus 155 ~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 226 (352)
+.+++. ...++..+....+++++++|+||.+|++|+|+||+++ +++.++.+... ......+++.+.+.++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (397)
T 3fsl_A 218 FGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAA 297 (397)
T ss_dssp SSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHH
T ss_pred hccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 877532 2334444433467899999999999999999999974 45665544322 223345568889988888
Q ss_pred HhcccCC---ChHHHHHHHHHHHHHHHHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHH
Q 018665 227 ALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 227 ~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
++..... ..+++++.+++++++++.+.+.|++++ ++.+..+.+|+++|++++ .+.+.+
T Consensus 298 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~- 361 (397)
T 3fsl_A 298 VLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS---------------AAQVDR- 361 (397)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC---------------HHHHHH-
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC---------------HHHHHH-
Confidence 8875211 035678888999999999999999874 688888889999987753 334444
Q ss_pred HHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHH
Q 018665 301 LLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGL 343 (352)
Q Consensus 301 l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~ 343 (352)
+++++||.+.||+ |++++. +++++++++++|++++
T Consensus 362 ~l~~~gi~v~~g~--------Ris~~~~~~~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 362 LREEFGVYLIASG--------RMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp HHHTTCEECCTTC--------EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHhCCEEECCCC--------eEEEEecCHhhHHHHHHHHHhhC
Confidence 4445699999874 999988 8889999999998763
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=301.42 Aligned_cols=313 Identities=16% Similarity=0.140 Sum_probs=253.2
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEE--eCChHHHHHHHHH--HhcCCC-----CEEEecCCCCCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILV--SNGAKQSILQAVL--AVCSPG-----DEVIIPAPFWVS 72 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~--~~g~~~a~~~~~~--~l~~~~-----~~vl~~~~~~~~ 72 (352)
.|++..|..++| +.+++++. .+++.+++++|++ |+|+++++..++. .++++| |+|+++.|+|.+
T Consensus 69 ~y~~~~g~~~lr------~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~ 142 (412)
T 1ajs_A 69 EYLPILGLAEFR------TCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN 142 (412)
T ss_dssp CCCCTTCCHHHH------HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTH
T ss_pred CCCCCCCCHHHH------HHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHH
Confidence 588889999999 99999996 6666567899999 9999999998864 456788 999999999999
Q ss_pred hHHHHHhcCCe-EEEecccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEe
Q 018665 73 YPEMARIADAT-PVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 148 (352)
Q Consensus 73 ~~~~~~~~g~~-v~~i~~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~liv 148 (352)
+...++..|.+ ++.+++..++++.+|++++++++++ +++++++++|+||||.++|.+++++|+++|+++ |+++|+
T Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~ 221 (412)
T 1ajs_A 143 HNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR-FLFPFF 221 (412)
T ss_dssp HHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEE
T ss_pred HHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEE
Confidence 99999999999 9999986445677999999998864 667888899999999999999999999999999 999999
Q ss_pred cccccccccCC--CCccccccCCCCCCceEEEeccccccccccceeEEEEc---Chh----HHHHHHhhhhccccCCChH
Q 018665 149 DEIYEHIIYAP--ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSI 219 (352)
Q Consensus 149 D~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~---~~~----~~~~~~~~~~~~~~~~~~~ 219 (352)
||+|+++.+++ ....++..+....++++++.|+||.+|++|+|+||+++ +++ +++.+.........+++++
T Consensus 222 De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (412)
T 1ajs_A 222 DSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQ 301 (412)
T ss_dssp EESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSH
T ss_pred EcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChH
Confidence 99999887754 12223333322357889999999999978999999998 887 4444444333333446999
Q ss_pred HHHHHHHHhcccCC---ChHHHHHHHHHHHHHHHHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCC
Q 018665 220 SQKAGVAALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 293 (352)
Q Consensus 220 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
.+.++.++++.... ..+++++++++++++++.+.+.|+++. ++.+..+.+|+++|+.+ +
T Consensus 302 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 366 (412)
T 1ajs_A 302 GARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL---------------N 366 (412)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC---------------C
T ss_pred HHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCC---------------C
Confidence 99999999986210 024678889999999999999999873 47777788899888754 3
Q ss_pred hHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHhhh
Q 018665 294 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 294 ~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~ 346 (352)
. ++...+++++||.+.|+ +|++++. +++++++++++|+++++++
T Consensus 367 ~-~~~~~~l~~~gv~v~~~--------~Ris~~~~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 367 P-KQVEYLINQKHIYLLPS--------GRINMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp H-HHHHHHHHTTCEECCTT--------SEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred H-HHHHHHHHhCCEEecCC--------cEEEeeeCCHHHHHHHHHHHHHHHHhc
Confidence 2 44455555669999874 5999996 8899999999999998764
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=282.69 Aligned_cols=290 Identities=18% Similarity=0.281 Sum_probs=240.9
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
..| ++++..++| +.+|++++ +++++|++|+|+++++..++..+ +||+|+++.|+|.++...++..|
T Consensus 46 ~~y-~~~~~~~lr------~~la~~~~-----~~~~~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g 111 (337)
T 3p1t_A 46 NRY-PFDAEPRVM------RKLAEHFS-----CPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVSG 111 (337)
T ss_dssp TSC-CTTHHHHHH------HHHHHHHT-----SCGGGEEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHHHHTTSC
T ss_pred ccC-CCCchHHHH------HHHHHHhC-----cCHHHEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHHHHHHcC
Confidence 346 567889999 99999997 67789999999999999999988 88999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++++ .++.+|++++++. .+++++++++|+||||.++| ++++.++|+++ ++ +|+||+|+++...+.
T Consensus 112 ~~~~~v~~~--~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~---~~~l~~l~~~~-~~-~ivDea~~~~~~~~~- 181 (337)
T 3p1t_A 112 LRHFEIGLT--DDLLLDPNDLAQV--SRDDCVVLANPSNPTGQALS---AGELDQLRQRA-GK-LLIDETYVDYSSFRA- 181 (337)
T ss_dssp CEEEEECBC--TTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCC---HHHHHHHHHHC-SE-EEEECTTGGGSSCSS-
T ss_pred CEEEEecCC--CCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCC---HHHHHHHHHhC-Cc-EEEECCChhhccccc-
Confidence 999999986 3567999999986 36789999999999999999 66777778899 87 555999998654332
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
.. ....+++++++|+||.+|++|+|+||+++++++++.+..... .++++.+.+.++.++++. .+...+.
T Consensus 182 -~~----~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--~~~~~~~~~~a~~~~l~~----~~~~~~~ 250 (337)
T 3p1t_A 182 -RG----LAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQW--FCNVGTLDLHALEAALDN----DRAREAH 250 (337)
T ss_dssp -SC----CCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTSC--TTCSCHHHHHHHHHHHTC----HHHHHHH
T ss_pred -cc----cccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhcC--CCCCCHHHHHHHHHHhCC----HHHHHHH
Confidence 11 122467899999999999999999999999999998877543 456889999999999885 4556677
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
.+++.++++.+.+.|+++ |+.+..+.+++ +++..+ +..++.+.|.++ ||.+.+|..|+.++++
T Consensus 251 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~--------------~~~~~~~~l~~~-gi~v~~g~~~~~~~~i 313 (337)
T 3p1t_A 251 IAKTLAQRRRVADALRGL-GYRVASSEANF-VLVENA--------------AGERTLRFLRER-GIQVKDAGQFGLHHHI 313 (337)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCBCCCSSSE-EEEECT--------------TTHHHHHHHHHT-TEECEEGGGGTCCSEE
T ss_pred HHHHHHHHHHHHHHHHHC-cCEECCCCCeE-EEEEcC--------------CHHHHHHHHHHC-CeEEEECccCCCCCeE
Confidence 777888889999999988 88887666665 555554 445677777654 9999999999888999
Q ss_pred EEEeecCHHHHHHHHHHHHHHHh
Q 018665 322 RISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 322 Ri~~~~~~~~l~~~~~~l~~~~~ 344 (352)
|++++ ++++++++++.|+++.+
T Consensus 314 Ris~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 314 RISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp EEECC-CHHHHHHHHHHHHHHTC
T ss_pred EEecC-CHHHHHHHHHHHHHHhh
Confidence 99998 67899999999988764
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=300.18 Aligned_cols=313 Identities=15% Similarity=0.116 Sum_probs=250.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEE--eCChHHHHHHHH--HHhcCCCCEEEecCCCCCChHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILV--SNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~--~~g~~~a~~~~~--~~l~~~~~~vl~~~~~~~~~~~~~ 77 (352)
.|++..|..++| +.+++++. .+++.+++++|++ |+|+++++..++ ..++.+||+|+++.|+|.++...+
T Consensus 68 ~y~~~~g~~~lr------~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~ 141 (412)
T 1yaa_A 68 EYLGITGLPSLT------SNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIF 141 (412)
T ss_dssp CCCCTTCCHHHH------HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHH
T ss_pred CCCCCCCcHHHH------HHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHH
Confidence 588889999999 99999997 6666567889999 999999999884 344568999999999999999999
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhccCC---eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLTEK---SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~---~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+..|.+++.+++....++.+|+++|+++++++ ..++++++|+||||.+++.+++++|+++|+++ |+++|+||+|++
T Consensus 142 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~ 220 (412)
T 1yaa_A 142 ENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK-NHIALFDTAYQG 220 (412)
T ss_dssp HTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred HHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEeccccc
Confidence 99999999999832235779999999998643 34555599999999999999999999999999 999999999998
Q ss_pred cccCC--CCccccccCCCCCC---ceEEEeccccccccccceeEEEE--c-----Chh----HHHHHHhhhhccccCCCh
Q 018665 155 IIYAP--ATHTSFASLPGMWE---RTLTVNGFSKAFAMTGWRLGYIA--G-----PKH----FVAACNKIQSQFTSGASS 218 (352)
Q Consensus 155 ~~~~~--~~~~~~~~~~~~~~---~~i~~~s~sK~~g~~g~~~g~l~--~-----~~~----~~~~~~~~~~~~~~~~~~ 218 (352)
+.+++ ....++..+....+ ++++++|+||.+|++|+|+||++ + +++ +++.+.........+++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 300 (412)
T 1yaa_A 221 FATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPA 300 (412)
T ss_dssp TSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCH
T ss_pred ccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCCh
Confidence 87654 11223322221124 78999999999997799999998 7 566 777777644444456789
Q ss_pred HHHHHHHHHhcccCC---ChHHHHHHHHHHHHHHHHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCC
Q 018665 219 ISQKAGVAALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 292 (352)
Q Consensus 219 ~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 292 (352)
+.+.++.++++.... ..+++++.+++++++++.+.+.|++++ ++.+..+.+|+++|+.+
T Consensus 301 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------------- 365 (412)
T 1yaa_A 301 YGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--------------- 365 (412)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC---------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC---------------
Confidence 999999999986210 024788889999999999999999873 38888888899888754
Q ss_pred ChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHhhh
Q 018665 293 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 293 ~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~ 346 (352)
+...+ ..+++++||.+.+ ++||+++. +++++++++++|+++++.+
T Consensus 366 ~~~~~-~~~l~~~gi~v~~--------~~Ris~~~~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 366 TPQMV-KRLEETHAVYLVA--------SGRASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp CHHHH-HHHHHHHCEECCT--------TSEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred CHHHH-HHHHHhCCEEecc--------CcEEEEccCCHhHHHHHHHHHHHHHHhh
Confidence 34455 5555556999976 47999997 8899999999999998753
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=297.28 Aligned_cols=310 Identities=13% Similarity=0.081 Sum_probs=247.8
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEE--EeCChHHHHHHHH---HHhcCCCCEEEecCCCCCChHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQIL--VSNGAKQSILQAV---LAVCSPGDEVIIPAPFWVSYPE 75 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~--~~~g~~~a~~~~~---~~l~~~~~~vl~~~~~~~~~~~ 75 (352)
..|++..|..++| +.+++++. ..+.++++++|. .+.++++++..+. .++.++||+|+++.|+|.++..
T Consensus 73 ~~y~~~~g~~~lr------~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~ 146 (409)
T 4eu1_A 73 MDYAPVTGIASFV------EEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHES 146 (409)
T ss_dssp CCCCCTTCCHHHH------HHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHH
T ss_pred ccCCCCCCcHHHH------HHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH
Confidence 3588899999999 99999985 333223367884 4999999998654 3456889999999999999999
Q ss_pred HHHhcCCeEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 76 MARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 76 ~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
.++..|.+++.+++..+.++.+|+++|++.++ ++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|
T Consensus 147 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~y 225 (409)
T 4eu1_A 147 IFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRR-NHIPFVDMAY 225 (409)
T ss_dssp HHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred HHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEeccc
Confidence 99999999999998655677899999999985 3556677799999999999999999999999999 9999999999
Q ss_pred cccccCCC--CccccccCCCCCCceEEEeccccccccccceeEEE---EcChh----HHHHHHhhhhccccCCChHHHHH
Q 018665 153 EHIIYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI---AGPKH----FVAACNKIQSQFTSGASSISQKA 223 (352)
Q Consensus 153 ~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 223 (352)
+++.+.+. ...++..+....+++++++|+||.+|++|+|+||+ +.+++ +++.+.........+++.+.+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (409)
T 4eu1_A 226 QGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWV 305 (409)
T ss_dssp TTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred cccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHH
Confidence 99877652 11233332223578899999999999999999996 45667 66666665555566788999999
Q ss_pred HHHHhcccCCC---hHHHHHHHHHHHHHHHHHHHHhcccCC----ceecCCCCceEEEeecCCccCCcccCCCCCCChHH
Q 018665 224 GVAALGLGYAG---GEVVSKMVKAFRERRDFLVKSFGELEG----VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 296 (352)
Q Consensus 224 ~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
+.++++..... .+.+++.+++++++++.+.+.|+++ | +.+..+++++++|+.++ .+
T Consensus 306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~----------------~~ 368 (409)
T 4eu1_A 306 VSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC-GSVHDWSHIERQVGMMAYTGLT----------------RE 368 (409)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCSCCHHHHHSCSSEEECCCC----------------HH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcceecCCceEEEEeCCC----------------HH
Confidence 99999862100 2346778889999999999999887 4 77778899999986542 24
Q ss_pred HHHHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHH
Q 018665 297 LCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGL 343 (352)
Q Consensus 297 ~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~ 343 (352)
+++.+++++||.+.|+. |++++. +++++++++++|++++
T Consensus 369 ~~~~ll~~~gv~v~p~~--------Ri~~~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 369 QVELLRSEYHIYMTLNG--------RAAVSGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp HHHHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEcCCC--------EEEEEecCHhhHHHHHHHHHHHh
Confidence 56677766799998863 999987 7788999999999876
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=297.99 Aligned_cols=310 Identities=15% Similarity=0.123 Sum_probs=245.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEE--eCChHHHHHHHHHHh--cCCCCEEEecCCCCCChHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILV--SNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~--~~g~~~a~~~~~~~l--~~~~~~vl~~~~~~~~~~~~~ 77 (352)
.|++..|..++| +++++++. +.+.++++++|++ ++|+++++..++..+ +.+||+|+++.|+|.++...+
T Consensus 64 ~y~~~~g~~~lr------~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~ 137 (396)
T 2q7w_A 64 NYLGIDGIPEFG------RCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVF 137 (396)
T ss_dssp CCCCTTCCHHHH------HHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHH
T ss_pred CCCCCCCCHHHH------HHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHH
Confidence 588889999999 99999997 4443345789998 999999999998765 368999999999999999999
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+..|.+++.++.+.++++.+|++++++.+++ +++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|++
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~ 216 (396)
T 2q7w_A 138 NSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK-GWLPLFDFAYQG 216 (396)
T ss_dssp HHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTT
T ss_pred HHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEeccccc
Confidence 9999999999986445677999999999864 467788899999999999999999999999999 999999999998
Q ss_pred cccCC-CCccccccCCCCCCceEEEeccccccccccceeEEEEc---Ch----hHHHHHHhhhhccccCCChHHHHHHHH
Q 018665 155 IIYAP-ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PK----HFVAACNKIQSQFTSGASSISQKAGVA 226 (352)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (352)
+.+++ ....++..+....++++++.|+||.+|++|+|+||+++ ++ ++++.+.........+++++.+.++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 296 (396)
T 2q7w_A 217 FARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVAT 296 (396)
T ss_dssp SSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred ccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHH
Confidence 87643 11223332322246889999999999989999999986 55 355555443333334569999999999
Q ss_pred HhcccCC---ChHHHHHHHHHHHHHHHHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHH
Q 018665 227 ALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 227 ~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
+++.... ..+++++.+++++++++.+.+.|+++. ++.+..+.+|+++|+++ +...+.+.
T Consensus 297 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 361 (396)
T 2q7w_A 297 ILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL---------------TKEQVLRL 361 (396)
T ss_dssp HHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCC---------------CHHHHHHH
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecC---------------CHHHHHHH
Confidence 9875200 025677888899999999999999873 37877788899888765 23344444
Q ss_pred HHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHH
Q 018665 301 LLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGL 343 (352)
Q Consensus 301 l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~ 343 (352)
++++||.+.+| +||+++. +++++++++++|++++
T Consensus 362 -l~~~gv~v~~~--------~Ris~~~~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 362 -REEFGVYAVAS--------GRVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp -HHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred -HHhcCeeecCC--------ceEEEeecCHHHHHHHHHHHHhcC
Confidence 44459999874 5999997 8899999999998763
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=299.56 Aligned_cols=314 Identities=16% Similarity=0.146 Sum_probs=252.8
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEE--eCChHHHHHH--HHHHhcCCCCEEEecCCCCCChHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILV--SNGAKQSILQ--AVLAVCSPGDEVIIPAPFWVSYPEMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~--~~g~~~a~~~--~~~~l~~~~~~vl~~~~~~~~~~~~~ 77 (352)
.|.+..|..++| +.+++++. ....++++++|++ |+|+++++.. .+.+++.+||+|++++|+|.++...+
T Consensus 89 ~Y~~~~G~~~lr------~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~ 162 (448)
T 3meb_A 89 EYPPVAGFPLFL------EAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIY 162 (448)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHH
T ss_pred CCCCCcchHHHH------HHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHH
Confidence 478889999999 99999983 1111122689999 9999999987 45567789999999999999999999
Q ss_pred H----hcCCeEEEecccCCC-CcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEec
Q 018665 78 R----IADATPVILPTRISE-NFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 78 ~----~~g~~v~~i~~~~~~-~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD 149 (352)
+ ..|.+++.++..+.+ ++.+|++++++.++ ++++++++++||||||..++.+++++|+++|+++ |+++|+|
T Consensus 163 ~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~-~~~li~D 241 (448)
T 3meb_A 163 DKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEK-KHIAFFD 241 (448)
T ss_dssp HHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEE
T ss_pred HhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEe
Confidence 9 999999999985444 67899999999997 3577888899999999999999999999999999 9999999
Q ss_pred ccccccccCCC--CccccccCCCCCCceEEEeccccccccccceeEEE--Ec--------C-h----hHHHHHHhhhhcc
Q 018665 150 EIYEHIIYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI--AG--------P-K----HFVAACNKIQSQF 212 (352)
Q Consensus 150 ~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l--~~--------~-~----~~~~~~~~~~~~~ 212 (352)
|+|+++.+++. ...++..+....++++++.|+||.+|++|+|+||+ ++ . + ++++.+....+..
T Consensus 242 eay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 321 (448)
T 3meb_A 242 SAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKT 321 (448)
T ss_dssp ESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcc
Confidence 99998876541 11222222222468899999999999999999998 66 4 4 5666666655666
Q ss_pred ccCCChHHHHHHHHHhcccCCCh---HHHHHHHHHHHHHHHHHHHHhccc--CC------ceecCCCCceEEEeecCCcc
Q 018665 213 TSGASSISQKAGVAALGLGYAGG---EVVSKMVKAFRERRDFLVKSFGEL--EG------VKMSEPQGAFYLFIDFSTYY 281 (352)
Q Consensus 213 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~--~g------~~~~~~~~g~~~~~~~~~~~ 281 (352)
..+++.+.+.++.+++....... +.+++.+++++++++.+.+.|+++ ++ +.+..+++++++|+.++
T Consensus 322 ~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--- 398 (448)
T 3meb_A 322 WSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT--- 398 (448)
T ss_dssp TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC---
T ss_pred cCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC---
Confidence 66788999999999987621111 347788889999999999999876 55 67777889999987652
Q ss_pred CCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHhhh
Q 018665 282 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~ 346 (352)
.+++..|++++||.+.||+ .|||++. +++++++++++|+++++++
T Consensus 399 -------------~~~~~~ll~~~gV~v~~G~-------gRis~a~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 399 -------------PEHVDYLKEKWSIYLVKAG-------GRMSMCGLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp -------------HHHHHHHHHHHCEEECSGG-------GEEEGGGCCTTTHHHHHHHHHHHHHHS
T ss_pred -------------HHHHHHHHHhCCEEEeCCC-------cEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 3556677666799999975 2999988 8888999999999999854
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=282.42 Aligned_cols=292 Identities=18% Similarity=0.292 Sum_probs=244.6
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEE
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~ 85 (352)
++.+..++| +.++++++ +++++|++++|+++++..++.+++++||+|+++.|+|.++...++..|.+++
T Consensus 63 ~~~~~~~lr------~~la~~~g-----~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~ 131 (360)
T 3hdo_A 63 PSASSQKLR------EVAGELYG-----FDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVR 131 (360)
T ss_dssp CCSSCHHHH------HHHHHHHT-----CCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEE
T ss_pred CCCchHHHH------HHHHHHhC-----cCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEE
Confidence 455678999 99999996 6789999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 86 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
.++++. ++.+ +++++.+ +++++++++|+||||.++| ++++.++|+++ |+++|+||+|+++. +....++
T Consensus 132 ~v~~~~--~~~~--~~l~~~~--~~~~v~i~~p~nptG~~~~---~~~l~~l~~~~-~~~li~De~~~~~~--~~~~~~~ 199 (360)
T 3hdo_A 132 TFGLTG--DFRI--AGFPERY--EGKVFFLTTPNAPLGPSFP---LEYIDELARRC-AGMLVLDETYAEFA--ESNALEL 199 (360)
T ss_dssp EECBCT--TSSB--TTCCSSB--CSSEEEEESSCTTTCCCCC---HHHHHHHHHHB-SSEEEEECTTGGGS--SCCCTHH
T ss_pred EeeCCC--CCCH--HHHHhhc--CCCEEEEeCCCCCCCCCcC---HHHHHHHHHHC-CCEEEEECChHhhC--CcchhHH
Confidence 999864 3333 5555444 3568899999999999999 67788888899 99999999999863 3212222
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 245 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (352)
....++++++.|+||.+|++|+|+||+++++++++.+...... +++|++.+.++.++++. .+++++.++++
T Consensus 200 ---~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~----~~~~~~~~~~~ 270 (360)
T 3hdo_A 200 ---VRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDH--YNLDRLAQAACVAALRD----QAYLSECCRRI 270 (360)
T ss_dssp ---HHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSCS--CCSCHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred ---hccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCCC--CCCCHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 1235788999999999998999999999999999998876543 56999999999999985 67889999999
Q ss_pred HHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEe
Q 018665 246 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 325 (352)
Q Consensus 246 ~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~ 325 (352)
+++++.+.+.|+++ ++.+..+ .+.++|+.+++. +..++.+.|.++ ||.+.+++....++++|+++
T Consensus 271 ~~~~~~l~~~L~~~-~~~~~~~-~~~~~~~~~~~~------------~~~~l~~~l~~~-gi~v~~~~~~~~~~~iRis~ 335 (360)
T 3hdo_A 271 RETREWFTTELRSI-GYDVIPS-QGNYLFATPPDR------------DGKRVYDGLYAR-KVLVRHFSDPLLAHGMRISI 335 (360)
T ss_dssp HHHHHHHHHHHHHT-TCEECCC-SSSEEEEECTTC------------CHHHHHHHHHHT-TEECBCCCSTTTTTSEEEEC
T ss_pred HHHHHHHHHHHHHC-CCEEcCC-CccEEEEECCCC------------CHHHHHHHHHHC-CEEEEECCCCCCCCEEEEEc
Confidence 99999999999988 8887654 455677877653 788999988865 99999987655678999999
Q ss_pred ecCHHHHHHHHHHHHHHHhh
Q 018665 326 AASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 326 ~~~~~~l~~~~~~l~~~~~~ 345 (352)
+ +++|++++++.|+++.+.
T Consensus 336 ~-~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 336 G-TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp C-CHHHHHHHHHHHHHHHC-
T ss_pred C-CHHHHHHHHHHHHHHhcc
Confidence 8 689999999999988654
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=292.16 Aligned_cols=298 Identities=17% Similarity=0.191 Sum_probs=239.0
Q ss_pred CccCCCCCC-----hhhhccchhhHHHHHHHHhcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCC----EEEecCCCCC
Q 018665 2 QFVRVSQGT-----LQMRVLWSFVQQFVINLKENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGD----EVIIPAPFWV 71 (352)
Q Consensus 2 ~~y~~~~~~-----~~l~~~~~~~~~ia~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~----~vl~~~~~~~ 71 (352)
..|++..|. .++| +++|++++++|+.+.+ ++|++|+|+++++..++.+++++|| +|++++|+|.
T Consensus 57 ~~Y~~~~G~~~~~~~~lr------~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~ 130 (391)
T 3bwn_A 57 SYFSDMTNLCWFLEPELE------DAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYS 130 (391)
T ss_dssp SSCSCTTSSSTTSCHHHH------HHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCT
T ss_pred hcCCCCCCcccccCHHHH------HHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCch
Confidence 358888898 9999 9999999977888877 5999999999999999999999999 9999999999
Q ss_pred ChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 72 SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 72 ~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
.+...++..|.+++.++++.+ + ++ .++++++++++||||||.+++ +|++.++++ ++++|+||+
T Consensus 131 ~~~~~~~~~g~~~~~~~~d~~-~--l~--------~~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~-~~~ii~De~ 193 (391)
T 3bwn_A 131 TYVEETTYVRSGMYKWEGDAW-G--FD--------KKGPYIELVTSPNNPDGTIRE-----TVVNRPDDD-EAKVIHDFA 193 (391)
T ss_dssp HHHHHHHTTCBTTEEEEEEST-T--CC--------CCSCEEEEEESSCTTTCCCCC-----CCC-----C-CCEEEEECT
T ss_pred hHHHHHHHcCCeEEEecCCHH-H--cC--------CCCCEEEEECCCCCCCchhHH-----HHHHHhhcC-CCEEEEeCC
Confidence 999999999999998887632 2 12 247889999999999999996 344422333 499999999
Q ss_pred ccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcc
Q 018665 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
|.. +. ..++.. ..+++++++|+||.+|++|+|+||+++ ++++++.+.........+++.+.|.++.++++.
T Consensus 194 y~~----~~-~~~l~~---~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~ 265 (391)
T 3bwn_A 194 YYW----PH-YTPITR---RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNV 265 (391)
T ss_dssp TCS----TT-TSCCCC---CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred CCC----CC-CCcccc---CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhC
Confidence 973 21 122221 357899999999999999999999997 889999988877655677999999999999986
Q ss_pred cCC-------ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC-------------CCceEEEeecCCccCCcccCCCC
Q 018665 231 GYA-------GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-------------QGAFYLFIDFSTYYGSEAEGFGK 290 (352)
Q Consensus 231 ~~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-------------~~g~~~~~~~~~~~~~~~~~~~~ 290 (352)
+.. ...++++.++.++++++.+.+.|++++++.+..+ ++|+++|+++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~----------- 334 (391)
T 3bwn_A 266 LKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE----------- 334 (391)
T ss_dssp HHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS-----------
T ss_pred cchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc-----------
Confidence 310 1457889999999999999999998877766543 445688998863
Q ss_pred CCChHHHHHHHHHccCEEeccCCCCCC-CCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 291 IENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 291 ~~~~~~~~~~l~~~~gi~i~~g~~~~~-~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
.+.+.+.|. ++||.+.||..|+. ++++|||++.+++++++++++|++++++
T Consensus 335 ---~~~~~~~l~-~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 335 ---ETDLVSELR-RHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMKLI 386 (391)
T ss_dssp ---SCCHHHHHH-HTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHHHSCC--
T ss_pred ---HHHHHHHHH-HCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 123444444 56999999999875 6899999999889999999999988765
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=289.07 Aligned_cols=307 Identities=15% Similarity=0.102 Sum_probs=242.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEE--eCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILV--SNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~--~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~~ 78 (352)
.|++..+..++| +++++++...+ .++++|++ ++|++++++.++..+.. +||+|+++.|+|.++...++
T Consensus 64 ~y~~~~g~~~lr------~~la~~~~~~~--~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~ 135 (394)
T 2ay1_A 64 TYAGLSGEPEFQ------KAMGELILGDG--LKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMN 135 (394)
T ss_dssp CCCCSSCCHHHH------HHHHHHHHGGG--CCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH
T ss_pred CCCCCCCcHHHH------HHHHHHHhCCC--CCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH
Confidence 587888999999 99999985212 26789999 99999999999987754 89999999999999999999
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
..|.+++.++++.++++.+|++++++.+++ +++++++++|+||||.++|.+++++|+++|+++ |+++|+||+|+++
T Consensus 136 ~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~ 214 (394)
T 2ay1_A 136 FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT-GALPLIDLAYQGF 214 (394)
T ss_dssp HHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEECCTTS
T ss_pred HcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecCcccc
Confidence 999999999986545677999999999864 356777899999999999999999999999999 9999999999987
Q ss_pred ccCCC-CccccccCCCCCCceEEEeccccccccccceeEEEEc---ChhHHHHH----HhhhhccccCCChHHHHHHHHH
Q 018665 156 IYAPA-THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKHFVAAC----NKIQSQFTSGASSISQKAGVAA 227 (352)
Q Consensus 156 ~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
.+++. ...++..+....++++++.|+||.+|++|+|+||+++ ++++++.+ .........+++++.+.++.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 294 (394)
T 2ay1_A 215 GDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTV 294 (394)
T ss_dssp SSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHH
T ss_pred ccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHH
Confidence 66431 1122332222235789999999999989999999998 66654443 3222233345689999999999
Q ss_pred hcccCC---ChHHHHHHHHHHHHHHHHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHH
Q 018665 228 LGLGYA---GGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 301 (352)
Q Consensus 228 l~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 301 (352)
++.... ..++.++++++++++++.+.+.|+++. ++.+..+.+|+++|++++ ...+.+.+
T Consensus 295 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~~~~~l 359 (394)
T 2ay1_A 295 LTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT---------------PEQVKRIK 359 (394)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC---------------HHHHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC---------------HHHHHHHH
Confidence 875200 025678888999999999999998873 477777788998888653 33454444
Q ss_pred HHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHH
Q 018665 302 LDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKG 342 (352)
Q Consensus 302 ~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~ 342 (352)
. ++||.+.+| +|++++. +++++++++++|+++
T Consensus 360 ~-~~gi~v~~~--------~Ris~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 360 E-EFGIYMVGD--------SRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp H-HHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred H-hCCEEecCC--------CeEEeecCCHhhHHHHHHHHHHc
Confidence 4 459999874 5999987 889999999999876
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=287.82 Aligned_cols=296 Identities=14% Similarity=0.186 Sum_probs=244.2
Q ss_pred cCCCC-C---ChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHh--------cCCCCEEEecCCCC
Q 018665 4 VRVSQ-G---TLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAV--------CSPGDEVIIPAPFW 70 (352)
Q Consensus 4 y~~~~-~---~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l--------~~~~~~vl~~~~~~ 70 (352)
|++.. | ..++| +++|++++ +.+..+++++|++|+|+++++..++.++ +++||+|+++.|+|
T Consensus 92 Y~~~~~G~~~~~~lr------~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y 165 (427)
T 2hox_A 92 YFFNPVSNFISFELE------KTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFY 165 (427)
T ss_dssp SSCSSCCTTCCHHHH------HHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCC
T ss_pred CCCCCCCccchHHHH------HHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCc
Confidence 77777 8 89999 99999999 6666678899999999999999999999 89999999999999
Q ss_pred CChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecc
Q 018665 71 VSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150 (352)
Q Consensus 71 ~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~ 150 (352)
..+...++..|.+++.+ .+|++.|+++++++++++++++||||||.+++ +. + . ++..+.|+
T Consensus 166 ~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~~-------l--~-~~~~i~d~ 226 (427)
T 2hox_A 166 PVFREQTKYFDKKGYVW--------AGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-AV-------I--K-GCKSIYDM 226 (427)
T ss_dssp HHHHHHHHHSCBTTEEE--------EEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-CS-------S--T-TCEEEEEC
T ss_pred ccHHHHHHHcCCeeeee--------cCCHHHHHHhhcCCceEEEEcCCCCCcccccH-HH-------H--c-CCCEEEee
Confidence 99999999999887643 36788999988888999999999999999999 42 2 2 44567777
Q ss_pred cccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhc
Q 018665 151 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALG 229 (352)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 229 (352)
++.+ + ..++..+. .++++++.|+||.+|++|+|+||+++ ++++++.+.........+++.+.|.++..+++
T Consensus 227 ~~~~----~--~~s~~~~~--~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~ 298 (427)
T 2hox_A 227 VYYW----P--HYTPIKYK--ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLK 298 (427)
T ss_dssp TTCS----T--TTSCCCSC--BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred cccC----C--CCCccccC--CCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Confidence 6632 1 23444443 57889999999999999999999999 58999999888776667899999999999987
Q ss_pred ccC--------CChHHHHHHHHHHHHHHHHHHHHhcccCCcee--------------cCCCCceEEEeecCCccCCcccC
Q 018665 230 LGY--------AGGEVVSKMVKAFRERRDFLVKSFGELEGVKM--------------SEPQGAFYLFIDFSTYYGSEAEG 287 (352)
Q Consensus 230 ~~~--------~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~--------------~~~~~g~~~~~~~~~~~~~~~~~ 287 (352)
... ...+++++.++.++++++.+.+.|++++|+.+ ..|++|+|+|++++.
T Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-------- 370 (427)
T 2hox_A 299 EVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-------- 370 (427)
T ss_dssp HHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--------
T ss_pred cchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC--------
Confidence 521 01356777888999999999999998766654 245679999999874
Q ss_pred CCCCCChHHHHHHHHHccCEEeccCCCCCC-CCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 288 FGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 288 ~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
+..++++.|+++.||.+.||..|+. ++++|||++.+++++++++++|++++++
T Consensus 371 -----~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 371 -----EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp -----GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred -----cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 3445677777556999999998875 7899999999999999999999999864
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=276.50 Aligned_cols=294 Identities=17% Similarity=0.288 Sum_probs=235.1
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+++.+ .++| +.+|++++ +++++|++|+|+++++..++.++. ||+|+++.|+|.++...++..|.
T Consensus 46 ~y~~~~~-~~lr------~~la~~~~-----~~~~~i~~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~~g~ 111 (350)
T 3fkd_A 46 HYPEPDA-GTLR------QMLAKRNS-----VDNNAILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACRMYEH 111 (350)
T ss_dssp SCCCTTC-HHHH------HHHHHHTT-----CCGGGEEEESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHHTTC
T ss_pred cCCCCcH-HHHH------HHHHHHhC-----cCHHHEEEcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHHHcCC
Confidence 4554444 8899 99999986 678899999999999999999987 89999999999999999999999
Q ss_pred eEEEecc-cCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 83 TPVILPT-RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 83 ~v~~i~~-~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+++.+++ +..++ +++ ++++++++++|+||||.++|.+++++|+++|++ .++|+||+|+++.+.+..
T Consensus 112 ~~~~v~~~~~~~~--~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~---~~li~Dea~~~~~~~~~~ 178 (350)
T 3fkd_A 112 EVCFYPSNEDIGE--ADF--------SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPD---TTFVLDQSYVSFTTEEVI 178 (350)
T ss_dssp EEEEEETTSCGGG--SCC--------TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTT---SEEEEECTTTTSCSSCCC
T ss_pred eEEEEecCCcccc--Ccc--------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCC---CEEEEECchhhhccCcch
Confidence 9999998 53233 333 578999999999999999996666666655532 599999999988765532
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
.. ... ...++++++.|+||.+|++|+|+||+++++++++.+...... ++++.+.+.++.++++.. ..+.+++
T Consensus 179 ~~--~~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~---~~~~~~~ 250 (350)
T 3fkd_A 179 RP--ADI-KGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTP--WAVNALAIEAAKFILIHP---AQFTLPI 250 (350)
T ss_dssp CG--GGG-TTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCCT--TCSCHHHHHHHHHHHHCT---TTTCCCH
T ss_pred hh--HHh-hcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCCC--CCCCHHHHHHHHHHHhCH---HHHHHHH
Confidence 22 222 236788999999999999999999999999999998876543 468999999999999863 2233333
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--CC
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DT 319 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--~~ 319 (352)
.+.. ++++.+.+.|+++|++.+.++ .+.++|++++.. ++.++.+.|.++.||.+.||..|+. ++
T Consensus 251 ~~~~-~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~------------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~ 316 (350)
T 3fkd_A 251 RKWQ-RNTVDFITALNRLDGVEVHPS-GTTFFLLRLKKG------------TAAELKKYMLEEYNMLIRDASNFRGLDES 316 (350)
T ss_dssp HHHH-HHHHHHHHHHHHSTTEEECCC-SSSEEEEEESSS------------CHHHHHHHHHHTTCEECEECTTSTTCCTT
T ss_pred HHHH-HHHHHHHHHHhcCCCcEECCC-CCcEEEEECCCC------------CHHHHHHHHHHHCCEEEEeCccCCCCCCC
Confidence 4434 788889999988889888654 455677888763 6789999999846999999988865 68
Q ss_pred eEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 320 CIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 320 ~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
++||+++ +.++++++++.|+++.++.
T Consensus 317 ~iRis~~-~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 317 YVRITTQ-RPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp EEEEECC-CHHHHHHHHHHHHHHHTC-
T ss_pred EEEEEcC-CHHHHHHHHHHHHHHHHHh
Confidence 9999988 5678889999998887654
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=270.08 Aligned_cols=283 Identities=22% Similarity=0.348 Sum_probs=231.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.| ++.+..++| +.+++++++. .+++++|++++|+++++..++.++ ||+|+++ |+|.++...++..|.
T Consensus 52 ~y-~~~~~~~lr------~~la~~~~~~--~~~~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~~~g~ 118 (335)
T 1uu1_A 52 IY-YDSPDEELI------EKILSYLDTD--FLSKNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIFAKAVGA 118 (335)
T ss_dssp SC-CCSSCHHHH------HHHHHHHTCS--SCCGGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHHHHHHTC
T ss_pred cC-CCCchHHHH------HHHHHHcCCC--CCCHHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHHHHHcCC
Confidence 35 445688999 9999999733 356789999999999999999988 7999999 999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++ .++.+|++++ +++++|++++|+||||.++|.+ ++.++++.. | ++|+||+|+++...
T Consensus 119 ~~~~v~~~--~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~---~l~~l~~~~-~-~li~De~~~~~~~~---- 182 (335)
T 1uu1_A 119 KFLEVPLT--KDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFERE---EIERILKTG-A-FVALDEAYYEFHGE---- 182 (335)
T ss_dssp EEEECCCC--TTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHH---HHHHHHHTT-C-EEEEECTTHHHHCC----
T ss_pred eEEEeccC--CCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHH---HHHHHHHhC-C-EEEEECcchhhcch----
Confidence 99999885 3456787776 4789999999999999999955 555555567 8 89999999976532
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
+........++++++.|+||.+|++|+|+||+++++++++.+...... +++|++.+.++.++++. .+++++.+
T Consensus 183 -~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~----~~~~~~~~ 255 (335)
T 1uu1_A 183 -SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP--FNVSYVSQMFAKVALDH----REIFEERT 255 (335)
T ss_dssp -CCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSCT--TCSCHHHHHHHHHHHHT----HHHHHHHH
T ss_pred -hHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcCC--CCcCHHHHHHHHHHhCC----HHHHHHHH
Confidence 212211225688999999999998999999999999999988776543 47999999999999985 56788889
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEE
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 322 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iR 322 (352)
++++++++++.+.|+++ |+.+. +..++++|+++++. +..++.+.|.++ ||.+.+ .++++|
T Consensus 256 ~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~------------~~~~~~~~l~~~-gi~v~~-----~~~~iR 315 (335)
T 1uu1_A 256 KFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEKE------------EKERLLEHLRTK-NVAVRS-----FREGVR 315 (335)
T ss_dssp HHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECCTH------------HHHHHHHHHHHH-TEEEEE-----ETTEEE
T ss_pred HHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECCCC------------CHHHHHHHHHHC-CEEEEE-----CCCeEE
Confidence 99999999999999987 77764 45677789988752 577888988875 999988 367999
Q ss_pred EEeecCHHHHHHHHHHHHHH
Q 018665 323 ISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 323 i~~~~~~~~l~~~~~~l~~~ 342 (352)
++++. .+++++++++|+++
T Consensus 316 is~~~-~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 316 ITIGK-REENDMILRELEVF 334 (335)
T ss_dssp EECCC-HHHHHHHHHHHHCC
T ss_pred EEeCC-HHHHHHHHHHHHhh
Confidence 99976 57799999998764
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=272.44 Aligned_cols=302 Identities=18% Similarity=0.198 Sum_probs=239.9
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
|.+..|..+++ +.+++++. ..| .+++++++|+++++..++.++.++||.|+++.|+|..+...++..|.
T Consensus 80 ~~~~~g~~~~~------~~l~~~la~~~g----~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~ 149 (398)
T 3a2b_A 80 SRFLNGTLDIH------VELEEKLSAYVG----KEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFS 149 (398)
T ss_dssp BTTTTCCCHHH------HHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSS
T ss_pred cCcccCCcHHH------HHHHHHHHHHhC----CCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCC
Confidence 34456666777 77777666 444 36899999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccC----CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~----~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
+++.++. .|+++|++.+++ +++++++++|+||||.++| +++|.++|+++ |+++|+||+|+.+.++
T Consensus 150 ~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~---~~~l~~~~~~~-~~~li~De~~~~~~~~ 218 (398)
T 3a2b_A 150 KVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN---LPELTSIANEF-DAAVMVDDAHSLGVIG 218 (398)
T ss_dssp EEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC---HHHHHHHHHHH-TCEEEEECTTTTTTSS
T ss_pred ceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC---HHHHHHHHHHc-CcEEEEECCCcccccC
Confidence 9999985 478999998875 7899999999999999999 99999999999 9999999999876553
Q ss_pred CCCccccccCCCCCCc-eEEEeccccccccccceeEEEEcChhHHHHHHhh-hhccccCCChHHHH-HHHHHhcccCCCh
Q 018665 159 PATHTSFASLPGMWER-TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-QSQFTSGASSISQK-AGVAALGLGYAGG 235 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 235 (352)
.. ..++.......++ +++++|+||.+|++| ||+++++++++.+... ......+.+.+.+. ++.++++. .
T Consensus 219 ~~-~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~----~ 290 (398)
T 3a2b_A 219 HK-GAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEI----I 290 (398)
T ss_dssp GG-GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHH----H
T ss_pred CC-CCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHH----H
Confidence 21 1222221111234 699999999998666 9999999999988764 22222334444554 55677765 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
++.++.+++++++++.+.+.|+++ |+.+..+. |+++|+.++... +..++.+.|.++ ||.+.+|..|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-g~~~~~~~~~~~-----------~~~~l~~~l~~~-gi~v~~~~~~ 356 (398)
T 3a2b_A 291 QNEPEHIEKLWKNTDYAKAQLLDH-GFDLGATE-SPILPIFIRSNE-----------KTFWVTKMLQDD-GVFVNPVVSP 356 (398)
T ss_dssp HHCTHHHHHHHHHHHHHHHHHHHT-TCCBCSCC-SSEEEEECCCHH-----------HHHHHHHHHHHT-TEECEEECTT
T ss_pred hhCHHHHHHHHHHHHHHHHHHHhc-CCCcCCCC-CCEEEEEcCCHH-----------HHHHHHHHHHHC-CcEEEeeCCC
Confidence 446678889999999999999988 88877655 677889887532 577899999987 9999999877
Q ss_pred CC---CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 316 GD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 316 ~~---~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.. ++++|++++. +++++++++++|++++++++-
T Consensus 357 ~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~~ 394 (398)
T 3a2b_A 357 AVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAEV 394 (398)
T ss_dssp TSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC-
T ss_pred CCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 53 4799999997 999999999999999987754
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=274.81 Aligned_cols=313 Identities=12% Similarity=0.104 Sum_probs=237.2
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh----cCCCCEEEecCCCCCChHHHHHh
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV----CSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l----~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
|.|..|.+++| +++++++.............-|.|+|+|+..++..+ .++||+|++++|+|..|...++.
T Consensus 83 Y~p~~G~p~lr------~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~ 156 (420)
T 4h51_A 83 YLPISGYQPFI------DEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKA 156 (420)
T ss_dssp CCCTTCCHHHH------HHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHH
T ss_pred CCCcCChHHHH------HHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHH
Confidence 99999999999 999999862222222233455889999887766654 46899999999999999999999
Q ss_pred cCCe-EEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 80 ADAT-PVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 80 ~g~~-v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
.|.+ +..++..+..++.+|.+.+.+.+. ++++++++++||||||..++.+++++|+++|+++ ++++|.|++|.++
T Consensus 157 aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~-~~~~~~D~~Y~~~ 235 (420)
T 4h51_A 157 AGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAK-HHQVFFDSAYQGY 235 (420)
T ss_dssp TTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTT
T ss_pred cCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc-CceEeeehhhhhh
Confidence 9987 555555545667788888877763 5677888899999999999999999999999999 9999999999998
Q ss_pred ccCCCCccc--cccCCCCCCceEEEeccccccccccceeEEEEcChhHHH-------HHHhhhhccccCCChHHHHHHHH
Q 018665 156 IYAPATHTS--FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA-------ACNKIQSQFTSGASSISQKAGVA 226 (352)
Q Consensus 156 ~~~~~~~~~--~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 226 (352)
.+++....+ ........++++++.|+||.++++|+|+||++++.+..+ .+....+....+++...+.++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~ 315 (420)
T 4h51_A 236 ASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHL 315 (420)
T ss_dssp TTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred ccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHH
Confidence 876532222 111222346789999999999999999999987654333 23334445556788889999998
Q ss_pred HhcccCCC---hHHHHHHHHHHHHHHHHHHHHhccc--C-CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHH
Q 018665 227 ALGLGYAG---GEVVSKMVKAFRERRDFLVKSFGEL--E-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 227 ~l~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~--~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
.+.+.... ...++..+++++++|+.+.+.|+++ + .|..+.++.|+|.|+.+ +.+ .++.
T Consensus 316 ~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gl---------------s~e-~v~~ 379 (420)
T 4h51_A 316 ILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGL---------------SKA-QCEY 379 (420)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCC---------------CHH-HHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCc---------------CHH-HHHH
Confidence 88863221 2345667788999999999999876 2 25666788999888754 333 3455
Q ss_pred HHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHhhhCC
Q 018665 301 LLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 301 l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~~ 348 (352)
|. ++||++.+++ |||++. +++.+++++++|.++++++.+
T Consensus 380 L~-e~~Vy~~~~g--------Ris~Agl~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 380 CQ-NHNIFITVSG--------RANMAGLTHETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp HH-HTTEECCTTC--------EEEGGGCCHHHHHHHHHHHHHHHC----
T ss_pred HH-hCCEEEcCCC--------EEEeccCCHHHHHHHHHHHHHHHHHhhc
Confidence 65 5699998864 999997 999999999999999998765
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=266.23 Aligned_cols=295 Identities=15% Similarity=0.191 Sum_probs=240.7
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC--hHHHHHhcCCeEEEecccCCCCccc
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFLL 97 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~--~~~~~~~~g~~v~~i~~~~~~~~~~ 97 (352)
+.+++++. ..|.+ +++++++++|+++++..++.+++++||+|+++.|+|.+ +...++..|.+++.++.+. ++.+
T Consensus 56 ~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~ 132 (386)
T 2dr1_A 56 MDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP--GKAV 132 (386)
T ss_dssp HHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCC
T ss_pred HHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC--CCCC
Confidence 66666665 44544 36789999999999999999999999999999999998 8889999999999999864 4568
Q ss_pred CHHHHHhhc--cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 98 DPKVLESKL--TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 98 d~~~l~~~l--~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
|+++|++++ .+++++|++++|+||||.+.| +++|.++|+++ |+++|+|++|+.+.+ +.++. ..+.+
T Consensus 133 d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~~~~----~~~~~----~~~~d 200 (386)
T 2dr1_A 133 KPEDLDDALRKNPDVEAVTITYNETSTGVLNP---LPELAKVAKEH-DKLVFVDAVSAMGGA----DIKFD----KWGLD 200 (386)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHT-TCEEEEECTTTBTTB----CCCTT----TTTCS
T ss_pred CHHHHHHHHhcCCCCcEEEEEeecCCcchhCC---HHHHHHHHHHc-CCeEEEEccccccCc----ccccc----ccCCc
Confidence 999999999 468899999999999999999 99999999999 999999999986432 12221 13567
Q ss_pred EEEeccccccccccceeEEEEcChhHHHHHH----------------hh--hhccccCCChHHHHHHHHHhcccCCChH-
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACN----------------KI--QSQFTSGASSISQKAGVAALGLGYAGGE- 236 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~----------------~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 236 (352)
+++.|+||.++.+ .++|++++++++++.+. .. .....++++.+.+.++.++++. ..+
T Consensus 201 i~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~ 276 (386)
T 2dr1_A 201 VVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRI---IEKM 276 (386)
T ss_dssp EEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHH---HHHT
T ss_pred EEEEeccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH---HHHh
Confidence 9999999999744 35899999999888763 12 1244557888889888888875 122
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcccCCceecCCC---CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 237 -VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 237 -~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
.+++++++++++++++.+.|+++ |+.+..+. .+.++++.++... +..++.++|.++ ||.+.+|
T Consensus 277 g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~-gi~v~~~ 343 (386)
T 2dr1_A 277 GGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPPGI-----------KGDEVYEAMRKR-GFELAKG 343 (386)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCTTC-----------CHHHHHHHHHHT-TEECEEC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCCCC-----------CHHHHHHHHHHC-CeEEecC
Confidence 36788899999999999999988 88877654 3667888887432 688999999987 9999998
Q ss_pred CCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 313 DAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 313 ~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
..+..++++|++++. +++++++++++|++++++++
T Consensus 344 ~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 344 YGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp CGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 866567899999995 99999999999999998764
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=266.03 Aligned_cols=296 Identities=18% Similarity=0.164 Sum_probs=231.2
Q ss_pred CChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEecCCCCCChHHHH---HhcC
Q 018665 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPEMA---RIAD 81 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~~~~vl~~~~~~~~~~~~~---~~~g 81 (352)
+..+++ +.++++++ +++++|++++|+++++..++.++. ++||+|+++.|+|+++...+ +..|
T Consensus 45 ~~~~l~------~~la~~~g-----~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g 113 (384)
T 1eg5_A 45 HMEKAR------EKVAKVLG-----VSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKG 113 (384)
T ss_dssp HHHHHH------HHHHHHHT-----SCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHH------HHHHHHcC-----CCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcC
Confidence 345677 99999986 667899999999999999999987 78999999999999887655 7789
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC--EEEEecccccccccCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHIIYAP 159 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~--~~livD~~~~~~~~~~ 159 (352)
.+++.++++. ++.+|+++|++++++++++|++++|+||||.++| +++|.++|+++ | +++|+||+|+. +
T Consensus 114 ~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~-~~~~~li~Dea~~~----~ 183 (384)
T 1eg5_A 114 FKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQP---VEDVTRIVKKK-NKETLVHVDAVQTI----G 183 (384)
T ss_dssp CEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHH-CTTCEEEEECTTTT----T
T ss_pred CEEEEEccCC--CCccCHHHHHHHhCCCCeEEEEECCCCCcccccC---HHHHHHHHHhc-CCceEEEEEhhhhc----C
Confidence 9999999863 4568999999999889999999999999999999 89999999999 9 99999999973 2
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhH--HHHHHhh---hhccccCCChHHHHHHHHHhcccCCC
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF--VAACNKI---QSQFTSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
..+.++.. .+.++++.|+||.+|++| +||+++++++ .+.+... .....++++.+.+.++.++++. .
T Consensus 184 ~~~~~~~~----~~~di~~~s~sK~~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~ 254 (384)
T 1eg5_A 184 KIPFSLEK----LEVDYASFSAHKFHGPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEI---A 254 (384)
T ss_dssp TSCCCCTT----TCCSEEEEEGGGGTSCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH---H
T ss_pred CcccCchh----cCCCEEEecHHHhcCCCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHH---H
Confidence 21222221 246699999999988667 7999998875 2222111 1123457888899888888875 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC---CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~ 311 (352)
.+++++.+++++++++++.+.|++ +++.+..+. .+.++++.+++. +..++.+.|.+ .||.+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~-~gi~v~~ 320 (384)
T 1eg5_A 255 VEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSFPNI------------RGSTLQNLLSG-YGIYVST 320 (384)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEECTTC------------CHHHHHHHHHH-TTEECBC
T ss_pred HHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeCCC------------CHHHHHHHHhh-CCeEEec
Confidence 356788899999999999999998 588876553 233466666642 67889988875 5999999
Q ss_pred CCCCCC-------------------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 312 GDAFGD-------------------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 312 g~~~~~-------------------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
|..|+. ++++||+++. +++++++++++|++++++++.
T Consensus 321 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 321 SSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp ------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred cccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 876642 3689999994 899999999999999988765
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=266.58 Aligned_cols=292 Identities=14% Similarity=0.156 Sum_probs=235.9
Q ss_pred HHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC--hHHHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~--~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.+++++. ..| .+++ +|++++|+++++..++.+++++||+|+++.|+|.+ +...++..|.+++.++++. ++.
T Consensus 70 ~~~~~~la~~~g--~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~ 145 (393)
T 1vjo_A 70 DEIQSLLRYVWQ--TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW--GEV 145 (393)
T ss_dssp HHHHHHHHHHHT--CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCC
T ss_pred HHHHHHHHHHhC--CCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC--CCC
Confidence 55555555 344 3567 89999999999999999999999999999999998 8889999999999999874 456
Q ss_pred cCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 97 LDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 97 ~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
+|+++|++.+++ +++++++++|+||||.+.| +++|.++|+++ |+++|+||+|+. +..+..+ . ..+.+
T Consensus 146 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~----g~~~~~~---~-~~~~d 213 (393)
T 1vjo_A 146 FSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREF-GTLLLVDTVTSL----GGVPIFL---D-AWGVD 213 (393)
T ss_dssp CCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-TCEEEEECTTTT----TTSCCCT---T-TTTCS
T ss_pred CCHHHHHHHHhhCCceEEEEeccCCCcceecc---HHHHHHHHHHc-CCEEEEECCccc----cCcCCcc---c-ccCcc
Confidence 899999999987 8999999999999999999 89999999999 999999999983 2222222 1 23567
Q ss_pred EEEeccccccccccceeEEEEcChhHHHHHHhh----h---------------hcccc-CCChHHHHHHHHHhcccCCCh
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI----Q---------------SQFTS-GASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~----~---------------~~~~~-~~~~~~~~~~~~~l~~~~~~~ 235 (352)
+++.|+||.++.++ |+|++++++++++.+... . ..+.. +++.+.+.++.++++.. ..
T Consensus 214 i~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~--~~ 290 (393)
T 1vjo_A 214 LAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLI--AQ 290 (393)
T ss_dssp EEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH--HH
T ss_pred EEEEcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHH--HH
Confidence 99999999998566 999999999998887532 0 02223 67888898888888751 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCC---ceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
.++++++++++++++++.+.|+++ |+++..+.+ +.++++.+|... +..++.+.|.+++||.+.+|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~g 358 (393)
T 1vjo_A 291 EGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGV-----------DGKAVARRLLNEHNIEVGGG 358 (393)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTC-----------CHHHHHHHHHHHHCEECEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEEEcCCCC-----------CHHHHHHHHHhhCCEEEecC
Confidence 347788899999999999999988 888876653 345777776432 67889999987669999999
Q ss_pred CCCCCCCeEEEEe-ec--CHHHHHHHHHHHHHHH
Q 018665 313 DAFGDDTCIRISY-AA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 313 ~~~~~~~~iRi~~-~~--~~~~l~~~~~~l~~~~ 343 (352)
..+..++++||++ +. +++++++++++|++++
T Consensus 359 ~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 359 LGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp CGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 8777789999995 32 6778999999999876
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-35 Score=266.23 Aligned_cols=297 Identities=15% Similarity=0.201 Sum_probs=233.2
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCC-CCCcEEEeCChHHHHHHHHHHh----cCCCCEEEecCCCCCChH----HHH
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSY-TPDQILVSNGAKQSILQAVLAV----CSPGDEVIIPAPFWVSYP----EMA 77 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~-~~~~i~~~~g~~~a~~~~~~~l----~~~~~~vl~~~~~~~~~~----~~~ 77 (352)
..+..+++ +.++++++ . ++++|++++|+++++..++.++ +++||+|+++.|+|++.. ..+
T Consensus 66 ~~~~~~l~------~~la~~~~-----~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~ 134 (406)
T 1kmj_A 66 TEKMENVR------KRASLFIN-----ARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLC 134 (406)
T ss_dssp HHHHHHHH------HHHHHHTT-----CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHH
T ss_pred HHHHHHHH------HHHHHHcC-----CCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHH
Confidence 34456677 99999886 3 4689999999999999999999 889999999999998654 346
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 157 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~ 157 (352)
+..|.+++.++++. ++.+|+++|++++++++++|++++|+||||.++| +++|.++|+++ |+++|+|++|+...
T Consensus 135 ~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~~~~~g~- 207 (406)
T 1kmj_A 135 ARVGAELRVIPLNP--DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENP---LAEMITLAHQH-GAKVLVDGAQAVMH- 207 (406)
T ss_dssp HHHTCEEEEECBCT--TSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTTTTT-
T ss_pred HhCCCEEEEEecCC--CCCcCHHHHHHHhccCCeEEEEeCCCccccCcCC---HHHHHHHHHHc-CCEEEEEchhhcCC-
Confidence 77899999999873 4568999999999989999999999999999999 99999999999 99999999998632
Q ss_pred CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhh---------------------ccccCC
Q 018665 158 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS---------------------QFTSGA 216 (352)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~---------------------~~~~~~ 216 (352)
.+..+.. .+.++++.|+||.+|.+| +|++++++++++.+..... .+..++
T Consensus 208 ---~~~~~~~----~~~d~~~~s~~K~~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (406)
T 1kmj_A 208 ---HPVDVQA----LDCDFYVFSGHKLYGPTG--IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGT 278 (406)
T ss_dssp ---SCCCHHH----HTCSEEEEEGGGTTSCTT--CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSS
T ss_pred ---CCCcccc----cCCCEEEEEchhccCCCC--cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCC
Confidence 1112211 245699999999998666 8999999998887754321 112234
Q ss_pred ChHHHHHHH-HHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC--CCceEEEeecCCccCCcccCCCCCCC
Q 018665 217 SSISQKAGV-AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--QGAFYLFIDFSTYYGSEAEGFGKIEN 293 (352)
Q Consensus 217 ~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
+.+.+.++. ++++.. ...+++++.++++++++++.+.|++++++.+..+ .++++. +.+++. +
T Consensus 279 ~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~------------~ 343 (406)
T 1kmj_A 279 PNTGGIIGLGAALEYV--SALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIA-FNLGKH------------H 343 (406)
T ss_dssp CCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEE-EEETTC------------C
T ss_pred CCHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEE-EEECCC------------C
Confidence 555555444 555431 1235678888899999999999999888988877 566644 456532 6
Q ss_pred hHHHHHHHHHccCEEeccCCCC--------CCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 294 SESLCRYLLDKAQVALVPGDAF--------GDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 294 ~~~~~~~l~~~~gi~i~~g~~~--------~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
..++.+.|.++ ||.+.+|..| +.++++|++++. +++|++++++.|+++++.+
T Consensus 344 ~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 344 AYDVGSFLDNY-GIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp HHHHHHHHHHT-TEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 77888887765 9999998754 336899999997 8999999999999998765
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=263.95 Aligned_cols=299 Identities=17% Similarity=0.212 Sum_probs=234.0
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCC-CCCcEEEeCChHHHHHHHHHHh----cCCCCEEEecCCCCCC----hHHHHH
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSY-TPDQILVSNGAKQSILQAVLAV----CSPGDEVIIPAPFWVS----YPEMAR 78 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~-~~~~i~~~~g~~~a~~~~~~~l----~~~~~~vl~~~~~~~~----~~~~~~ 78 (352)
.+..+++ +.++++++ . +++++++++|+++++..++.++ .++||+|+++.|+|.+ +...++
T Consensus 72 ~~~~~l~------~~la~~~~-----~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 140 (420)
T 1t3i_A 72 DAYEAVR------NKVAKFIN-----ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAA 140 (420)
T ss_dssp HHHHHHH------HHHHHHTT-----CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHH
T ss_pred HHHHHHH------HHHHHHcC-----CCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHH
Confidence 4456677 99999986 3 4689999999999999999999 8899999999999998 456777
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
..|.+++.++++ .++.+|+++|++++++++++|++++|+||||.++| +++|.++|+++ |+++|+|++|+...
T Consensus 141 ~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~~~-- 212 (420)
T 1t3i_A 141 KTGAVLKFVQLD--EQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNP---AEEIAQLAHQA-GAKVLVDACQSAPH-- 212 (420)
T ss_dssp HHCCEEEEECBC--TTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHT-TCEEEEECTTTTTT--
T ss_pred hcCcEEEEeccC--CCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCC---HHHHHHHHHHc-CCEEEEEhhhccCC--
Confidence 889999999986 45568999999999989999999999999999999 99999999999 99999999998532
Q ss_pred CCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhc--------------------cccCCCh
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--------------------FTSGASS 218 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~--------------------~~~~~~~ 218 (352)
....+.. .+.++++.|+||.+|.+| +|++++++++++.+...... +..+.+.
T Consensus 213 --~~~~~~~----~~~di~~~s~sK~~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (420)
T 1t3i_A 213 --YPLDVQL----IDCDWLVASGHKMCAPTG--IGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPA 284 (420)
T ss_dssp --SCCCHHH----HTCSEEEEEGGGTTSCTT--CEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCC
T ss_pred --ccCchhh----cCCCEEEEehhhhcCCCc--eEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCcc
Confidence 1112222 245689999999887555 89999999988877544221 1224555
Q ss_pred HHHHHHHH-HhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC-----CceEEEeecCCccCCcccCCCCCC
Q 018665 219 ISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIE 292 (352)
Q Consensus 219 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~ 292 (352)
+.+.++.. +++.. ...+++++.++++++++++.+.|++++++++..+. .+.++++.+++.
T Consensus 285 ~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------ 350 (420)
T 1t3i_A 285 IAEAIALGAAVDYL--TDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL------------ 350 (420)
T ss_dssp HHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB------------
T ss_pred HHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCC------------
Confidence 55555443 44430 12246788889999999999999998888887664 244455567642
Q ss_pred ChHHHHHHHHHccCEEeccCCCC--------CCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 293 NSESLCRYLLDKAQVALVPGDAF--------GDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 293 ~~~~~~~~l~~~~gi~i~~g~~~--------~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+..++.+.|.+ .||.+.+|..| +.++++|++++. ++++++++++.|+++++.++.
T Consensus 351 ~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 351 HASDVATMVDQ-DGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CHHHHHHHHHT-TTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHH-CCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 67788887765 49999998543 336899999997 899999999999999988754
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=261.56 Aligned_cols=294 Identities=13% Similarity=0.109 Sum_probs=231.9
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCCh--HHHHHhcCCeEEEecccCCCCcccC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLD 98 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~--~~~~~~~g~~v~~i~~~~~~~~~~d 98 (352)
+.++++++ .++++|++|+|+++++..++.++.++||+|+++.|+|+++ ...++..|.+++.++++.+ +.+|
T Consensus 49 ~~la~~~g-----~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d 121 (392)
T 2z9v_A 49 DKAQKAMR-----LSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN--EAID 121 (392)
T ss_dssp HHHHHHTT-----CSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT--SCCC
T ss_pred HHHHHHhC-----CCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC--CCCC
Confidence 88888876 5568999999999999999999999999999999999875 3455668999999998743 4589
Q ss_pred HHHHHhhcc--CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 99 PKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 99 ~~~l~~~l~--~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
+++|+++++ +++++|++++|+||||.++| +++|.++|+++ |+++|+|++|+. +..+..+.. .+.++
T Consensus 122 ~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~----g~~~~~~~~----~~~d~ 189 (392)
T 2z9v_A 122 PQAVADMLKAHPEITVVSVCHHDTPSGTINP---IDAIGALVSAH-GAYLIVDAVSSF----GGMKTHPED----CKADI 189 (392)
T ss_dssp HHHHHHHHHHCTTCCEEEEESEEGGGTEECC---HHHHHHHHHHT-TCEEEEECTTTB----TTBSCCGGG----GTCSE
T ss_pred HHHHHHHHhcCCCCcEEEEeccCCCCceecc---HHHHHHHHHHc-CCeEEEEccccc----CCccccccc----ccceE
Confidence 999999994 57899999999999999999 89999999999 999999999974 221222222 23558
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHhhh--------------------hccccCCChHHHHHHHHHhcccCCChH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ--------------------SQFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
++.|+||+++ ++.++|++++++++++.+.... .....+++...+.++.++++. ..+
T Consensus 190 ~~~s~sK~~~-~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~ 265 (392)
T 2z9v_A 190 YVTGPNKCLG-APPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL---YLN 265 (392)
T ss_dssp EEECSSSTTC-CCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHH---HHH
T ss_pred EEecCccccc-CCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHh
Confidence 9999999764 3345699999999988876421 122345666666666667654 123
Q ss_pred H-HHHHHHHHHHHHHHHHHHhcccCCceecCCC----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc
Q 018665 237 V-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311 (352)
Q Consensus 237 ~-~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~ 311 (352)
. +++++++++++++++.+.|+++ |+.+..+. .+.++++.+++.. +..++.+.|.+++||.+.+
T Consensus 266 ~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~~gi~v~~ 333 (392)
T 2z9v_A 266 EGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTPDGV-----------DEKALRQAARARYGVVFSS 333 (392)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECCCCC-----------CHHHHHHHHHhcCCEEEec
Confidence 3 6788889999999999999887 88777623 4666788886432 6788999998766999999
Q ss_pred CCCCCCCCeEEEEe-e--cCHHHHHHHHHHHHHHHhhhCCC
Q 018665 312 GDAFGDDTCIRISY-A--ASLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 312 g~~~~~~~~iRi~~-~--~~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
|..+..++++|+++ + .+++++++++++|++++++++.+
T Consensus 334 g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 374 (392)
T 2z9v_A 334 GRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAGRK 374 (392)
T ss_dssp CCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcCCC
Confidence 87666678999995 5 39999999999999999887654
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=262.43 Aligned_cols=294 Identities=19% Similarity=0.171 Sum_probs=230.4
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHH----HHhcCC
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEM----ARIADA 82 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~----~~~~g~ 82 (352)
.+..+++ +.++++++ .++++|++++|+++++..++.++ .++||+|+++.|+|.++... ++..|.
T Consensus 59 ~~~~~l~------~~la~~~g-----~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~ 127 (390)
T 1elu_A 59 QLIAQLR------QALAETFN-----VDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGI 127 (390)
T ss_dssp HHHHHHH------HHHHHHTT-----SCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHH------HHHHHHcC-----CCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCc
Confidence 4556677 99999886 66779999999999999999999 88999999999999987654 467799
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHH----hCCCEEEEecccccccccC
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA----KHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~----~~~~~~livD~~~~~~~~~ 158 (352)
+++.++++.+.++.+|+++|++.+++++++|++++|+||||.++| +++|.++|+ ++ |+++|+|++|+..
T Consensus 128 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~-~~~li~Dea~~~g--- 200 (390)
T 1elu_A 128 TYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNY-PVRVLVDGAQSAG--- 200 (390)
T ss_dssp EEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSS-CCEEEEECTTTBT---
T ss_pred EEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecC---HHHHHHHHhhhhhhc-CcEEEEEcccccC---
Confidence 999999864345678999999999889999999999999999999 999999999 99 9999999999842
Q ss_pred CCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh----------------------hhccccCC
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI----------------------QSQFTSGA 216 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~----------------------~~~~~~~~ 216 (352)
..+..+ . ..+.++++.|++|.++ +|.++|++++++++++.+... ......++
T Consensus 201 -~~~~~~---~-~~~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (390)
T 1elu_A 201 -SLPLDF---S-RLEVDYYAFTGHKWFA-GPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATS 274 (390)
T ss_dssp -TBCCCT---T-TSCCSEEEEESSSTTC-CCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCC
T ss_pred -CcCCCh---h-hcCCCEEEcccccccc-CCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCC
Confidence 222221 1 1355699999999554 566799999999887766432 12223456
Q ss_pred ChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC---CCceEEEeecCCccCCcccCCCCCCC
Q 018665 217 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIEN 293 (352)
Q Consensus 217 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
+...+.++.++++... ..++++++.++++++++++.+.|++++|+++..+ .+++ ++++++... +
T Consensus 275 ~~~~~~a~~~al~~l~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~-~~~~~~~~~-----------~ 341 (390)
T 1elu_A 275 AYPQYAGLLAALQLHQ-RQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGL-VSFTVDSPL-----------G 341 (390)
T ss_dssp CHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSE-EEEEECSSS-----------C
T ss_pred CHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccE-EEEEcCCCC-----------C
Confidence 7777777766665310 0224788889999999999999998888888743 4555 445776331 6
Q ss_pred hHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 294 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 294 ~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
..++.+.|.++ ||.+.+|. .++++||+++. +++++++++++|+++
T Consensus 342 ~~~~~~~l~~~-gi~v~~~~---~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 342 HRAIVQKLEEQ-RIYLRTIA---DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp HHHHHHHHHHT-TEECEEET---TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHC-CEEEEecC---CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 78899998765 99999875 46899999964 899999999998754
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=257.04 Aligned_cols=291 Identities=12% Similarity=0.142 Sum_probs=232.6
Q ss_pred HHHHHHHHhcCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC--hHHHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTP--DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~--~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~--~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ .+. ++|++++|+++++. ++.+++++||+|+++.++|++ +...++..|.+++.++++. ++.
T Consensus 42 ~~la~~~~-----~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~ 113 (384)
T 3zrp_A 42 KGLRYVMG-----ASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSP--GDY 113 (384)
T ss_dssp HHHHHHHT-----CCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCST--TCC
T ss_pred HHHHHHhC-----CCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCC--CCC
Confidence 77777775 445 88999999999999 999999999999999999965 5567788999999999874 446
Q ss_pred cCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 97 LDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 97 ~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
+|+++|++++++ +++++++++|+||||.++| +++|.++|+++ |+++|+|++++... ....+. ..+.+
T Consensus 114 ~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~~~----~~~~~~----~~~~d 181 (384)
T 3zrp_A 114 VKPGEVEEEVRKSEYKLVALTHVETSTGVREP---VKDVINKIRKY-VELIVVDGVSSVGA----EEVKAE----EWNVD 181 (384)
T ss_dssp CCHHHHHHHHHHSCEEEEEEESEETTTTEECC---HHHHHHHHGGG-EEEEEEECTTTTTT----SCCCTT----TTTCS
T ss_pred CCHHHHHHHHHhCCCcEEEEeCCCCCCceECc---HHHHHHHHHhc-CCEEEEECcccccC----cccccc----ccCCC
Confidence 899999999987 8999999999999999999 89999999999 99999999987521 112221 13456
Q ss_pred EEEeccccccccccceeEEEEcChhHHHHH-------------Hhhh---------hccc-cCCChHHHHHHHHHhcccC
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKHFVAAC-------------NKIQ---------SQFT-SGASSISQKAGVAALGLGY 232 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~-------------~~~~---------~~~~-~~~~~~~~~~~~~~l~~~~ 232 (352)
+++.|+||.++ ++.++|++++++++++.+ .... .... .+++...+.++.++++..
T Consensus 182 ~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~- 259 (384)
T 3zrp_A 182 VYLTASQKALG-SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLI- 259 (384)
T ss_dssp EEEEETTSTTC-CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH-
T ss_pred EEEecCccccc-CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHH-
Confidence 99999999986 445699999999988876 2221 1111 256777777776777641
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 308 (352)
....+++++++++++++++.+.|+++ ++.+..+. .+.++++.+++. +..++.+.|.++ ||.
T Consensus 260 -~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~-gi~ 324 (384)
T 3zrp_A 260 -EKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGVILKVA------------DPQKVLAGTVNE-GVE 324 (384)
T ss_dssp -HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEECSSS------------CHHHHHHHHHTT-TCC
T ss_pred -HhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEEECCCC------------CHHHHHHHHHHC-CEE
Confidence 12337888899999999999999988 88887665 466778888763 788999999876 999
Q ss_pred eccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCCC
Q 018665 309 LVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 309 i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
+.+|..+.. +++|+++.. +++++++++++|++++++++..
T Consensus 325 v~~g~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 366 (384)
T 3zrp_A 325 FAPGVHPAF-KYFRIGHMGWVTPNDAIIAISVIERTLRKLGEP 366 (384)
T ss_dssp CEECCCTTC-CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred EecCCCCCc-CEEEEeccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 998864333 899999885 8899999999999999987653
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=258.28 Aligned_cols=300 Identities=13% Similarity=0.150 Sum_probs=234.9
Q ss_pred CChhhhccchhhHHHHHHHHhcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCCh--HHHHHhcCCeEE
Q 018665 9 GTLQMRVLWSFVQQFVINLKENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPV 85 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~--~~~~~~~g~~v~ 85 (352)
...+++ +.++++++ .+++ +|++++|+++++..++.+++++||+|+++.|+|+++ ...++..|.+++
T Consensus 53 ~~~~l~------~~la~~~g-----~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 121 (393)
T 2huf_A 53 IMDDIK------EGVRYLFQ-----TNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVR 121 (393)
T ss_dssp HHHHHH------HHHHHHHT-----CCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHH------HHHHHHhC-----CCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeE
Confidence 345566 88888886 5554 899999999999999999999999999999999874 345677899999
Q ss_pred EecccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 86 ILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
.++++. ++.+|+++|++++++ ++++|++++|+||||.++| +++|.++|+++ |+++|+|++++. +..+..
T Consensus 122 ~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~-~~~li~D~a~~~----~~~~~~ 191 (393)
T 2huf_A 122 VVKSKV--GQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQG---LEGVGALCHQH-NCLLIVDTVASL----GGAPMF 191 (393)
T ss_dssp EEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT-TCEEEEECTTTB----TTBCCC
T ss_pred EEeCCC--CCCCCHHHHHHHHhccCCcEEEEEccCCCccccCC---HHHHHHHHHHc-CCEEEEEccccc----CCCCcc
Confidence 999864 346899999999987 8999999999999999999 89999999999 999999999764 221122
Q ss_pred cccCCCCCCceEEEecccccc-ccccceeEEEEcChhHHHHHHhhh----h-------------------ccccCCChHH
Q 018665 165 FASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQ----S-------------------QFTSGASSIS 220 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~-g~~g~~~g~l~~~~~~~~~~~~~~----~-------------------~~~~~~~~~~ 220 (352)
+ . ..+.++++.|+||++ |++| +|++++++++++.+.... . ....+++...
T Consensus 192 ~---~-~~~~d~~~~s~sK~l~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
T 2huf_A 192 M---D-RWEIDAMYTGSQKVLGAPPG--ITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTL 265 (393)
T ss_dssp T---T-TTTCSEEECCSSSTTCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHH
T ss_pred h---h-hcCccEEEECCCcccccCCC--eEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHH
Confidence 1 1 135679999999986 4455 499999999998886541 0 1113456666
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC---CceEEEeecCCccCCcccCCCCCCChHHH
Q 018665 221 QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESL 297 (352)
Q Consensus 221 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (352)
+.++.++++.. ....+++..++++++++++.+.|+++ |+.+..+. .++++++.++... +..++
T Consensus 266 ~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 331 (393)
T 2huf_A 266 LYGLREAIAMA--CEEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVPQGV-----------DWLKA 331 (393)
T ss_dssp HHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECCTTC-----------CHHHH
T ss_pred HHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcCCCC-----------CHHHH
Confidence 66666677641 01237788889999999999999988 88877653 3556778876432 67889
Q ss_pred HHHHHHccCEEeccCCCCCCCCeEEEEe-ec--CHHHHHHHHHHHHHHHhhhCCC
Q 018665 298 CRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 298 ~~~l~~~~gi~i~~g~~~~~~~~iRi~~-~~--~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
.+.|.+++||.+.+|..+..++++||++ +. +++++++++++|++++++++..
T Consensus 332 ~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 386 (393)
T 2huf_A 332 AQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKPD 386 (393)
T ss_dssp HHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999876699999988776688999999 53 6789999999999999988764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=259.87 Aligned_cols=299 Identities=14% Similarity=0.137 Sum_probs=238.7
Q ss_pred ChhhhccchhhHHHHHHHHhcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcCCeEEE
Q 018665 10 TLQMRVLWSFVQQFVINLKENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVI 86 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~ 86 (352)
..++| +.++++++ .+++ +|++++|+++++..++.+++++||+|+++.|+|.++. ..++..|.+++.
T Consensus 53 ~~~l~------~~la~~~~-----~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 121 (396)
T 2ch1_A 53 MDEVK------DGLRYIFQ-----TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRT 121 (396)
T ss_dssp HHHHH------HHHHHHHT-----CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHH------HHHHHHhC-----CCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEE
Confidence 55677 99999997 5566 8999999999999999999999999999999999885 477889999999
Q ss_pred ecccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 87 LPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 87 i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
++++. ++.+|+++|++++++ ++++|++++|+||||.++| +++|.++|+++ |+++|+||+|+. +..+..+
T Consensus 122 v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~-~~~li~Dea~~~----g~~~~~~ 191 (396)
T 2ch1_A 122 IEGPP--DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQICHQH-DCLLIVDAVASL----CGVPFYM 191 (396)
T ss_dssp EECCT--TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT-TCEEEEECTTTB----TTBCCCT
T ss_pred ecCCC--CCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC---HHHHHHHHHHc-CCEEEEEccccc----cCCccch
Confidence 99863 456899999999987 8999999999999999999 88999999999 999999999883 2222222
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh-----------------------hccccCCChHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-----------------------SQFTSGASSISQK 222 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~ 222 (352)
.. .+..+++.|++|.++ ++.++|++++++++++.+.... .....+++...+.
T Consensus 192 ~~----~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (396)
T 2ch1_A 192 DK----WEIDAVYTGAQKVLG-APPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIF 266 (396)
T ss_dssp TT----TTCCEEECCCC-CCC-CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHH
T ss_pred hh----cCcCEEEEcCCcccc-CCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHH
Confidence 11 233477899999876 4456799999998888765310 1122456777888
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCC----ceEEEeecCCccCCcccCCCCCCChHHHH
Q 018665 223 AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSESLC 298 (352)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
++.++++.. ..+++++++++++++++++.+.|+++ |+++..+.+ +.++++.++... +..++.
T Consensus 267 a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 332 (396)
T 2ch1_A 267 ALREALAQI--AEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKGV-----------DWWKVS 332 (396)
T ss_dssp HHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC-----------CHHHHH
T ss_pred HHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccCCceEEEEcCCCC-----------CHHHHH
Confidence 888887641 12457788899999999999999988 888876654 236778876432 788999
Q ss_pred HHHHHccCEEeccCCCCCCCCeEEEEe-ec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 299 RYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 299 ~~l~~~~gi~i~~g~~~~~~~~iRi~~-~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+.|.+++||.+.+|..+..++++||++ +. +++++++++++|+++++++++
T Consensus 333 ~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 333 QYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 385 (396)
T ss_dssp HHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence 999876699999987666678999999 43 789999999999999988765
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=259.38 Aligned_cols=294 Identities=14% Similarity=0.127 Sum_probs=236.3
Q ss_pred HHHHHHHHhcCCCCCCCc-EEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC--hHHHHHhcCCeEEEecccCCCCccc
Q 018665 21 QQFVINLKENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFLL 97 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~-i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~--~~~~~~~~g~~v~~i~~~~~~~~~~ 97 (352)
+.++++++ .+.++ +++++|+++++..++.+++++||+|+++.|+|++ +...++..|.+++.++++ .++.+
T Consensus 53 ~~la~~~~-----~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~ 125 (411)
T 3nnk_A 53 ALYRGVFR-----TENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVP--WGEVF 125 (411)
T ss_dssp HHHHHHHT-----CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCC
T ss_pred HHHHHHhC-----CCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEecC--CCCCC
Confidence 77777775 44444 8899999999999999999999999999999987 888999999999999986 44568
Q ss_pred CHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 98 DPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 98 d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
|+++|++++++ ++++|++++|+||||.+.| +++|.++|+++ |+++|+|++++.. ..+..+. ..+.++
T Consensus 126 d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~~----~~~~~~~----~~~~d~ 193 (411)
T 3nnk_A 126 TPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP---LAELGEICRRY-DALFYTDATASLG----GNPLETD----VWGLDA 193 (411)
T ss_dssp CHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-TCEEEEECTTTBT----TBCCCTT----TTTCSE
T ss_pred CHHHHHHHHhhCCCeEEEEeCCCCCcceecc---HHHHHHHHHHc-CCEEEEECCcccC----Ccccchh----ccCCcE
Confidence 99999999986 8999999999999999999 88999999999 9999999997642 1112211 134569
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHhhh------------------------------------hccccCCChHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------------------------------------SQFTSGASSIS 220 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~ 220 (352)
++.|++|+++ ++.++|++++++++++.+.... .....+++...
T Consensus 194 ~~~s~~K~l~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (411)
T 3nnk_A 194 VSAGMQKCLG-GPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTA 272 (411)
T ss_dssp EECCSTTTTC-CCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHH
T ss_pred EEecCccccC-CCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHH
Confidence 9999999864 4457899999999998887542 11234567777
Q ss_pred HHHHHHHhcccCCChHH-HHHHHHHHHHHHHHHHHHhcccCCceecCCCC---ceEEEeecCCccCCcccCCCCCCChHH
Q 018665 221 QKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAEGFGKIENSES 296 (352)
Q Consensus 221 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
+.++.++++. ..+. ++++.++++++++++.+.|+++ ++.+..+.. +.++++.+|+.. +..+
T Consensus 273 ~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 337 (411)
T 3nnk_A 273 LFGARECARL---ILQEGLDYGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQGI-----------NGDQ 337 (411)
T ss_dssp HHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCTTC-----------CHHH
T ss_pred HHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCCCC-----------CHHH
Confidence 7777777764 1233 7888899999999999999987 887775543 667888887532 7889
Q ss_pred HHHHHHHccCEEeccCCCCCCCCeEEEEe-ec--CHHHHHHHHHHHHHHHhhhCCC
Q 018665 297 LCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 297 ~~~~l~~~~gi~i~~g~~~~~~~~iRi~~-~~--~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
+.+.|.+++||.+.+|.....++++||++ +. +++++++++++|+++++++...
T Consensus 338 l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~ 393 (411)
T 3nnk_A 338 ARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLKFP 393 (411)
T ss_dssp HHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999877799999886555678999998 54 7899999999999999887653
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=260.40 Aligned_cols=297 Identities=16% Similarity=0.126 Sum_probs=232.3
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEE
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~ 86 (352)
.....+++ +.++++++ .++.| ++++|++++..++.+++++||.|+++.|+|.++...++..|.+++.
T Consensus 87 ~~~~~~l~------~~la~~~~------~~~~i-~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~ 153 (399)
T 3tqx_A 87 QTIHKELE------KDISEFLG------TDDTI-LYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYR 153 (399)
T ss_dssp BHHHHHHH------HHHHHHHT------CSEEE-EESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEE
T ss_pred chHHHHHH------HHHHHHHC------CCcEE-EECchHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeE
Confidence 34456777 99999885 23444 4455688999999999999999999999999999999999999999
Q ss_pred ecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 87 LPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 87 i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
++. .|++.|++.+++ +++++++++|+||||.++| +++|.++|+++ |+++|+||+|+...+ +.
T Consensus 154 ~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~-~~ 221 (399)
T 3tqx_A 154 YKN-------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD---LKSICDLADKY-NALVMVDDSHAVGFI-GE 221 (399)
T ss_dssp ECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHT-TCEEEEECTTTTTTS-ST
T ss_pred eCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHc-CCEEEEECCcccccc-CC
Confidence 985 367788887764 7899999999999999999 99999999999 999999999963222 22
Q ss_pred CccccccC-CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhh--ccccCCChHHHHHHHHHhcccCCChHH
Q 018665 161 THTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 161 ~~~~~~~~-~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
...+.... ....+.+++++|+||.+| |++.||+++++++++.+..... .++.+++++.+.++.++++. ..++
T Consensus 222 ~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~ 296 (399)
T 3tqx_A 222 NGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLEL---LKTE 296 (399)
T ss_dssp TSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHH---HHHT
T ss_pred CCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHH---Hhhc
Confidence 11222221 111245699999999997 3455999999999998876533 23446788888888888875 1256
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-
Q 018665 238 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG- 316 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~- 316 (352)
.++.+++++++++++.+.|+++ |+.+..+. +.++|+.++... +..++.+.|.++ ||.+.++..+.
T Consensus 297 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~l~~~-gi~v~~~~~~~~ 362 (399)
T 3tqx_A 297 GPQLRKQLQENSRYFRAGMEKL-GFQLVPGN-HPIIPVMLGDAQ-----------LATNMADHLLQE-GIYVVGFSYPVV 362 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCBCCCS-SSEEEEEEECHH-----------HHHHHHHHHHHT-TEECCEECTTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHc-CCCcCCCC-CCEEEEEeCCHH-----------HHHHHHHHHHHC-CCEEeeeCCCCC
Confidence 7888999999999999999988 88877544 455777876532 577899999976 99999865442
Q ss_pred --CCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 317 --DDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 317 --~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
.++++|++++. +++++++++++|+++++++.
T Consensus 363 ~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 397 (399)
T 3tqx_A 363 PMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLG 397 (399)
T ss_dssp CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 23689999983 89999999999999998764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=256.52 Aligned_cols=294 Identities=13% Similarity=0.061 Sum_probs=231.5
Q ss_pred ChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcCCeEEEe
Q 018665 10 TLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVIL 87 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i 87 (352)
..++| +.++++++ .+++++++++|+++++..++.++.++||+|+++.|+|+++. ..++..|.+++.+
T Consensus 36 ~~~l~------~~la~~~g-----~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v 104 (352)
T 1iug_A 36 FLKAR------GLLREAFR-----TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERL 104 (352)
T ss_dssp HHHHH------HHHHHHHT-----CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHH------HHHHHHhC-----CCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHHHHHHHHHcCCceEEE
Confidence 45666 99999986 55689999999999999999999999999999999999865 5567789999999
Q ss_pred cccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-CEEEEecccccccccCCCCccccc
Q 018665 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 88 ~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~-~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
+++. ++.+|++++++ ++++++++++|+||||.++| +++|.++|+++| |+++|+|++|+. +..+..+.
T Consensus 105 ~~~~--~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~----~~~~~~~~ 172 (352)
T 1iug_A 105 DYPY--GDTPRPEDVAK---EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSL----LVGEVALE 172 (352)
T ss_dssp ECCT--TCCCCTTTSCC---SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTB----TTBCCCSG
T ss_pred eCCC--CCCCCHHHHhc---cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCccc----cCcceecc
Confidence 9864 34578888877 57899999999999999999 889999999874 799999999874 22111221
Q ss_pred cCCCCCCceEEEeccccccccccceeEEEEcChhHHHH---------HH----hh-hhccccCCChHHHHHHHHHhcccC
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA---------CN----KI-QSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~---------~~----~~-~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
. .+.++++.|+||+++ ++.++|++++++++++. +. .. ......+++...+.++.++++..
T Consensus 173 ~----~~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~- 246 (352)
T 1iug_A 173 A----MGVDAAASGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEV- 246 (352)
T ss_dssp G----GTCSEEEEESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH-
T ss_pred c----cCeeEEEecCccccc-CCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH-
Confidence 1 235588999999664 33458999999887654 22 11 12334567788887777777651
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC-CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~ 311 (352)
..++++.+++++++++++.+.|+++ |+.+..+. .+.++++.+++.. +..++.+.|.++ ||.+.+
T Consensus 247 --~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~-gi~v~~ 311 (352)
T 1iug_A 247 --LPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGV-----------PYARVKEAFAQR-GAVIAG 311 (352)
T ss_dssp --GGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTC-----------CHHHHHHHHHTT-TEECEE
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCCCC-----------CHHHHHHHHHHC-CEEEEe
Confidence 2337788899999999999999988 88887664 6667888887432 688899998876 999999
Q ss_pred CCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 312 GDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 312 g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
|.....++++|++++. +++++++++++|+++++++.
T Consensus 312 ~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 349 (352)
T 1iug_A 312 GQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL 349 (352)
T ss_dssp CCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhc
Confidence 8755457899999996 78999999999999998764
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-34 Score=259.57 Aligned_cols=296 Identities=15% Similarity=0.111 Sum_probs=234.4
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEE
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~ 86 (352)
..+..+++ +.++++++ .+ +.| ++++|++++..++.++.+++|.|+++.|+|.++...++..|.+++.
T Consensus 89 ~~~~~~l~------~~la~~~g-----~~-~~i-~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~ 155 (401)
T 1fc4_A 89 QDSHKELE------QKLAAFLG-----ME-DAI-LYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYR 155 (401)
T ss_dssp BHHHHHHH------HHHHHHHT-----CS-EEE-EESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEE
T ss_pred cHHHHHHH------HHHHHHhC-----CC-cEE-EeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEE
Confidence 45566777 99999986 33 445 5556678999899999999999999999999998999999999988
Q ss_pred ecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-cccc-C
Q 018665 87 LPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIY-A 158 (352)
Q Consensus 87 i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~-~ 158 (352)
++. .|++.|++.+++ ++++|++++|+||||.++| +++|.++|+++ |+++|+||+|+ ++.+ +
T Consensus 156 ~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~-~~~li~De~~~~g~~~~~ 224 (401)
T 1fc4_A 156 YAN-------NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCDLADKY-DALVMVDDSHAVGFVGEN 224 (401)
T ss_dssp ECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHT-TEEEEEECTTTTTTSSTT
T ss_pred ECC-------CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC---HHHHHHHHHHc-CCEEEEECcccccccCCC
Confidence 873 378889888864 7899999999999999999 99999999999 99999999996 6542 3
Q ss_pred CCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhh--ccccCCChHHHHHHHHHhcccCCChH
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
+....+...+. .+.++++.|+||.++ ++. .||+++++++++.+..... .++.+++++.+.++.++++. ..
T Consensus 225 g~~~~~~~~~~--~~~di~~~s~sK~~~-~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~ 296 (401)
T 1fc4_A 225 GRGSHEYCDVM--GRVDIITGTLGKALG-GAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM----VE 296 (401)
T ss_dssp SCCHHHHTTCT--TCCSEEEEESSSTTC-SSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHH----HH
T ss_pred CCccHHHcCCC--cCCcEEEecchhhcc-CCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHH----Hh
Confidence 33222222222 245699999999993 222 3999999999998876542 23557899999999888875 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
..++.+++++++++++.+.|+++ ++++. +..+.++|+++++.. +..++.+.|.++ ||.+.++..++
T Consensus 297 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~-gi~v~~~~~~~ 362 (401)
T 1fc4_A 297 AGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGDAV-----------VAQKFARELQKE-GIYVTGFFYPV 362 (401)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEECHH-----------HHHHHHHHHHHT-TEECCEECTTS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcCChH-----------HHHHHHHHHHHC-CcEEeeecCCC
Confidence 24677888899999999999988 88776 566777888887531 577899998876 99999987765
Q ss_pred C---CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 317 D---DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 317 ~---~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
. .+++|++++. +++++++++++|++++++++.
T Consensus 363 ~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 399 (401)
T 1fc4_A 363 VPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGV 399 (401)
T ss_dssp SCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 3 3589999984 899999999999999988754
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=256.62 Aligned_cols=293 Identities=13% Similarity=0.153 Sum_probs=233.5
Q ss_pred HHHHHHHHhcCCCCCCCcEE-EeCChHHHHHHHHHHhcCCCCEEEecCCCCCC--hHHHHHhcCCeEEEecccCCCCccc
Q 018665 21 QQFVINLKENGLSYTPDQIL-VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFLL 97 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~-~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~--~~~~~~~~g~~v~~i~~~~~~~~~~ 97 (352)
+.++++++ .++++++ +++|+++++..++.+++++||+|+++.|+|++ +...++..|.+++.++++. ++.+
T Consensus 51 ~~la~~~g-----~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~ 123 (416)
T 3isl_A 51 EMLRELFQ-----TKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEW--GTVF 123 (416)
T ss_dssp HHHHHHTT-----CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCC
T ss_pred HHHHHHhC-----CCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCC--CCCC
Confidence 66666665 5556665 88999999999999999999999999999987 7778899999999999874 3468
Q ss_pred CHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 98 DPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 98 d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
|+++|+++++ +++++|++++|+||||.+.| +++|.++|+++ |+++|+|++++.. .....+.. .+.++
T Consensus 124 d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~~----~~~~~~~~----~~~d~ 191 (416)
T 3isl_A 124 DPEDIIREIKKVKPKIVAMVHGETSTGRIHP---LKAIGEACRTE-DALFIVDAVATIG----GCEVKVDE----WKIDA 191 (416)
T ss_dssp CHHHHHHHHHHHCCSEEEEESEETTTTEECC---CHHHHHHHHHT-TCEEEEECTTTTT----TSCCCTTT----TTCSE
T ss_pred CHHHHHHHHhhCCCcEEEEEccCCCCceecC---HHHHHHHHHHc-CCEEEEECCcccc----CCCcchhh----cCCCE
Confidence 9999999998 58999999999999999999 89999999999 9999999998742 11112211 34569
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHhhh--------------------------------------hccccCCCh
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ--------------------------------------SQFTSGASS 218 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~ 218 (352)
++.|++|+++ ++.++|++++++++++.+.... .....+++.
T Consensus 192 ~~~s~~K~l~-g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (416)
T 3isl_A 192 AIGGTQKCLS-VPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEAT 270 (416)
T ss_dssp EECCSSSTTC-CCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCH
T ss_pred EEecCccccC-CCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCH
Confidence 9999999864 4456899999999988876321 112345677
Q ss_pred HHHHHHHHHhcccCCChHH-HHHHHHHHHHHHHHHHHHhcccCCceecCCCC---ceEEEeecCCccCCcccCCCCCCCh
Q 018665 219 ISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAEGFGKIENS 294 (352)
Q Consensus 219 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 294 (352)
..+.++.++++. ..++ ++++.++++++++++.+.|++. |+.+..+.. +.++++.+++.. +.
T Consensus 271 ~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 335 (416)
T 3isl_A 271 TMLYALREGVRL---VLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPGGI-----------DG 335 (416)
T ss_dssp HHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCTTC-----------CH
T ss_pred HHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCCCC-----------CH
Confidence 777777777764 2334 7888999999999999999986 888876643 566778887432 78
Q ss_pred HHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHH-HHHHHHHHHHHHhhhCC
Q 018665 295 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTT-LQAAVERIKKGLLTLRP 348 (352)
Q Consensus 295 ~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~-l~~~~~~l~~~~~~~~~ 348 (352)
.++.+.|.+++||.+.+|.....++++|++++. ++++ +++++++|+++++++..
T Consensus 336 ~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~~ 392 (416)
T 3isl_A 336 ESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNA 392 (416)
T ss_dssp HHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 899999987779999998765567899999944 4455 99999999999988754
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=260.00 Aligned_cols=295 Identities=15% Similarity=0.145 Sum_probs=235.0
Q ss_pred CChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEec
Q 018665 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 88 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~ 88 (352)
...+++ +.++++++ . ++.+++++|++++..++.++.++||.|+++.|+|.++...++..|.+++.++
T Consensus 110 ~~~~l~------~~la~~~g-----~--~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~ 176 (427)
T 2w8t_A 110 DHMEVE------QALRDFYG-----T--TGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFR 176 (427)
T ss_dssp HHHHHH------HHHHHHHT-----C--SEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEEC
T ss_pred HHHHHH------HHHHHHhC-----C--CceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeC
Confidence 345677 88888885 2 3667777778899999999999999999999999999999999999998887
Q ss_pred ccCCCCcccCHHHHHhhccC----CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 89 TRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 89 ~~~~~~~~~d~~~l~~~l~~----~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
. .|++.|++.+++ ++++|++++++||+|.+.| +++|.++|+++ |+++|+||+|+.+.+.... .+
T Consensus 177 ~-------~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~---l~~l~~l~~~~-g~~li~Dea~~~~~~~~~g-~~ 244 (427)
T 2w8t_A 177 H-------NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP---LKEMVAVAKKH-GAMVLVDEAHSMGFFGPNG-RG 244 (427)
T ss_dssp T-------TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC---HHHHHHHHHHT-TCEEEEECTTTTTTSSTTS-CC
T ss_pred C-------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC---HHHHHHHHHHc-CCEEEEECCccccccCCCC-Cc
Confidence 3 489999998865 7899999999999999999 99999999999 9999999999987654221 22
Q ss_pred ccc-CCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh--hccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 165 FAS-LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ--SQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 165 ~~~-~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
+.. .....+.++++.|+||.+|++| ||+++++++++.+.... ..++.++++..+.++.++++. ....+++
T Consensus 245 ~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~----~~~~~~~ 317 (427)
T 2w8t_A 245 VYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRK----LMTAHEK 317 (427)
T ss_dssp HHHHTTCTTCCSEEEEESSSTTCSCC---EEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHH----HTSCHHH
T ss_pred hHhhcCCCcCCcEEEecchhhhccCC---CEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHH----HhcCHHH
Confidence 222 2212345799999999998555 99999998888776542 223456777777777778775 2224677
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCCC-CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC---
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--- 317 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--- 317 (352)
+++++++++++.+.|+++ |+.+..+. .+.++++.+++.. +..++.+.|.++ ||.+.++..++.
T Consensus 318 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~-Gi~v~~~~~~~~~~~ 384 (427)
T 2w8t_A 318 RERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLEDQE-----------QAAMMWQALLDG-GLYVNMARPPATPAG 384 (427)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESSHH-----------HHHHHHHHHHHT-TEECEEECTTTSCTT
T ss_pred HHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECCHH-----------HHHHHHHHHHHC-CeEEeeeCCCCCCCC
Confidence 888999999999999988 88877333 5567888887531 577899999987 999999876653
Q ss_pred CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 318 DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 318 ~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+++|++++. +++++++++++|+++++++..
T Consensus 385 ~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 385 TFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 3589999997 999999999999999988765
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-35 Score=263.06 Aligned_cols=292 Identities=12% Similarity=0.114 Sum_probs=230.4
Q ss_pred cCCCCCChhhhccchhhHH-HHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 4 VRVSQGTLQMRVLWSFVQQ-FVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~-ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
|++..+..+++ +. ++++++ .+ +|++++|+++++..++.+++++||+|+++.|+|.++...++..|.
T Consensus 49 ~~~~~~~~~l~------~~~la~~~~-----~~--~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~ 115 (371)
T 2e7j_A 49 EIKTPPIHDFI------HNQLPKFLG-----CD--VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGL 115 (371)
T ss_dssp ----CCHHHHH------HTHHHHHTT-----SS--EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTC
T ss_pred hhHHHHHHHHH------HHHHHHHcC-----CC--EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCC
Confidence 34667778888 99 999986 33 999999999999999999999999999999999999999999999
Q ss_pred eEEEec--ccCCCCcccCHHHHHhhcc-----CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 83 TPVILP--TRISENFLLDPKVLESKLT-----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 83 ~v~~i~--~~~~~~~~~d~~~l~~~l~-----~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
+++.++ .+ .++.+|+++|+++++ ++++++++++|+||||.++| +++|.++|+++ |+++|+|++|+.+
T Consensus 116 ~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~-~~~li~D~a~~~~ 189 (371)
T 2e7j_A 116 NIALVPKTDY--PDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEY-DVPLLVNGAYAIG 189 (371)
T ss_dssp EEEEECCCCT--TTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTTBT
T ss_pred eEEEeecccC--CCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCC---HHHHHHHHHHc-CCeEEEECccccC
Confidence 999999 54 446789999999997 68999999999999999999 89999999999 9999999999874
Q ss_pred ccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHH-HHhhhh--cc-----ccCCChHHHHHHHHH
Q 018665 156 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA-CNKIQS--QF-----TSGASSISQKAGVAA 227 (352)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~-~~~~~~--~~-----~~~~~~~~~~~~~~~ 227 (352)
.. +.++... +.++++.|+||.++ ++.|+|++++++++++. +..... .. ..+++...+.++.++
T Consensus 190 ~~----~~~~~~~----~~di~~~s~sK~~~-~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 260 (371)
T 2e7j_A 190 RM----PVSLKEI----GADFIVGSGHKSMA-ASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMAS 260 (371)
T ss_dssp TB----CCCHHHH----TCSEEEEEHHHHSS-CCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHH
T ss_pred CC----CCChhhc----CCCEEEecCCcCCC-CCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHH
Confidence 32 1222222 34499999999997 45599999999988776 654332 11 345666666666666
Q ss_pred hcccCCChHHHHHHHHHH--HHHHHHHHHHhcccCCceecCCC--CceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 228 LGLGYAGGEVVSKMVKAF--RERRDFLVKSFGELEGVKMSEPQ--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
++. ... +..+++ +++++++.+.|+++ ++.+..+. .+.++|++++ +..++.+.|.+
T Consensus 261 l~~----~~~--~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~ 319 (371)
T 2e7j_A 261 FPH----VRE--RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE--------------VLYEISKKAKG 319 (371)
T ss_dssp HHH----HHH--HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH--------------HHHHHHHHSSS
T ss_pred HHH----HHH--HHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC--------------CHHHHHHHHHH
Confidence 653 111 566677 88889999999888 88887653 3556888875 35678888874
Q ss_pred ccCEEeccCCCCCC------CCeEE-EEee---cCHHHHHHHHHHHHHHHhhh
Q 018665 304 KAQVALVPGDAFGD------DTCIR-ISYA---ASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 304 ~~gi~i~~g~~~~~------~~~iR-i~~~---~~~~~l~~~~~~l~~~~~~~ 346 (352)
+||.+.| ..+.. ++++| ++++ .+++++++++++|+++++++
T Consensus 320 -~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 320 -GRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp -GGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -CCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 5999887 33222 68999 9999 58999999999999998765
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=254.68 Aligned_cols=295 Identities=16% Similarity=0.152 Sum_probs=234.3
Q ss_pred HHHHHHHHhcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC--hHHHHHhcCCeEEEecccCCCCccc
Q 018665 21 QQFVINLKENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFLL 97 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~--~~~~~~~~g~~v~~i~~~~~~~~~~ 97 (352)
+.++++++ ... ++|++++|+++++..++.++.++||+|+++.+.|++ +...++..|.+++.++++.+ +.+
T Consensus 63 ~~la~~~~-----~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~ 135 (393)
T 3kgw_A 63 QGIQYVFQ-----TRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPG--EHY 135 (393)
T ss_dssp HHHHHHHT-----CCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCC
T ss_pred HHHHHHhC-----CCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC--CCC
Confidence 77777765 333 369999999999999999999999999999888753 36788899999999998743 458
Q ss_pred CHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 98 DPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 98 d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
|+++|++++++ ++++|++++|+||||.++| +++|.++|+++ |+++|+||+++.. ....... ..+.++
T Consensus 136 d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~De~~~~g----~~~~~~~----~~~~d~ 203 (393)
T 3kgw_A 136 TLQEVEEGLAQHKPVLLFLVHGESSTGVVQP---LDGFGELCHRY-QCLLLVDSVASLG----GVPIYMD----QQGIDI 203 (393)
T ss_dssp CHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT-TCEEEEECTTTTT----TSCCCTT----TTTCCE
T ss_pred CHHHHHHHHhhCCCcEEEEeccCCcchhhcc---HHHHHHHHHHc-CCEEEEECCcccc----Ccccchh----hcCCCE
Confidence 99999999987 8999999999999999999 88999999999 9999999998742 1111111 134568
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHhhhh-----------------------ccccCCChHHHHHHHHHhcccCC
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS-----------------------QFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
++.|+||.++ ++.++|++++++++++.+..... ....+++...+.++.++++..
T Consensus 204 ~~~s~sK~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-- 280 (393)
T 3kgw_A 204 MYSSSQKVLN-APPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALI-- 280 (393)
T ss_dssp EEEESSSTTC-CCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--
T ss_pred EEecCccccc-CCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHH--
Confidence 8999999885 44569999999999988865321 123456777777777777641
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
....++++.++++++++++.+.|+++ ++++..+. .+.++++.+++.. +..++.+.|.+++||.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v 348 (393)
T 3kgw_A 281 AEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVTVPAGY-----------NWRDIVSYVLDHFSIEI 348 (393)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEECCTTB-----------CHHHHHHHHHHHHCEEC
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEeCCCCC-----------CHHHHHHHHHHhCCEEE
Confidence 12347888999999999999999988 88776433 3566778877542 78899999988779999
Q ss_pred ccCCCCCCCCeEEEEe-ec--CHHHHHHHHHHHHHHHhhhCCC
Q 018665 310 VPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 310 ~~g~~~~~~~~iRi~~-~~--~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
.+|..+..++++|+++ +. +++++++++++|++++++++..
T Consensus 349 ~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 349 SGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPKN 391 (393)
T ss_dssp BCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred eCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 9988776788999998 64 8899999999999999887653
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=254.33 Aligned_cols=279 Identities=16% Similarity=0.191 Sum_probs=212.8
Q ss_pred hhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCCeEEEe
Q 018665 12 QMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVIL 87 (352)
Q Consensus 12 ~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~~v~~i 87 (352)
+++ +.++++++ .+++++++|+++++..++.+++++||+|+++.|.|.++.. .++..|.+++.+
T Consensus 66 ~l~------~~ia~~~g-------~~~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v 132 (404)
T 1e5e_A 66 NLE------GKIAFLEK-------TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFI 132 (404)
T ss_dssp HHH------HHHHHHHT-------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred HHH------HHHHHHhC-------CCcEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEE
Confidence 677 99999985 2478888888999999999999999999999999999888 788899999999
Q ss_pred cccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh-CCCEEEEecccccccccCCCCccccc
Q 018665 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 88 ~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~-~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
+.+ |++++++++++++++|++++|+||||.+++ +++|+++|++ + |+++|+||+|+.+.+. .++
T Consensus 133 ~~~-------d~~~l~~~i~~~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~-~~~li~De~~~~~~~~----~~~- 196 (404)
T 1e5e_A 133 NTA-------IPGEVKKHMKPNTKIVYFETPANPTLKIID---MERVCKDAHSQE-GVLVIADNTFCSPMIT----NPV- 196 (404)
T ss_dssp CTT-------STTHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTST-TCEEEEECTTTCTTTC----CGG-
T ss_pred CCC-------CHHHHHHhcCCCCcEEEEECCCCCCCcccC---HHHHHHHHHhhc-CCEEEEECCCchhhhC----Ccc-
Confidence 864 788999999889999999999999999999 9999999999 9 9999999999976542 122
Q ss_pred cCCCCCCceEEEecccccccccccee-EEEEcChhHHH-HHHhhhhcc-ccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g~~~-g~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
..++++++.|+||.++++|.|+ ||+++++++++ .+......+ +.+.+++.+.++.++++. ....+ +
T Consensus 197 ----~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~---~~~~~----~ 265 (404)
T 1e5e_A 197 ----DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLST---LNIRM----K 265 (404)
T ss_dssp ----GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT---HHHHH----H
T ss_pred ----ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhH---HHHHH----H
Confidence 1357799999999998899997 99999999888 787765555 556888888888888874 12222 2
Q ss_pred HHHHHHHHHHHHhccc--------------CCceecCCC----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHcc
Q 018665 244 AFRERRDFLVKSFGEL--------------EGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 305 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~--------------~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (352)
+..++.+.+.+.+++. |++++..++ ++++.| ++++ ....+. .++++.
T Consensus 266 ~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~-------------~~~~~~-~~l~~~ 330 (404)
T 1e5e_A 266 AESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKS-------------GFEGAK-KLLDNL 330 (404)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETT-------------HHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCC-------------CHHHHH-HHHHhC
Confidence 3333444444444332 344444333 666555 7653 223344 455566
Q ss_pred CEEeccCCCCCC---------------------------CCeEEEEeecCHHHHHHHHHHHHHHHhhhCC
Q 018665 306 QVALVPGDAFGD---------------------------DTCIRISYAASLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 306 gi~i~~g~~~~~---------------------------~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~~ 348 (352)
|| +.+|..++. ++++|||++. |+++++++.|+++++.+.+
T Consensus 331 ~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--e~~~~li~~l~~al~~~~~ 397 (404)
T 1e5e_A 331 KL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLDALLR 397 (404)
T ss_dssp SS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHHC
T ss_pred CC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHHHHHH
Confidence 88 445543331 5799999999 7888899988888876543
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=253.71 Aligned_cols=290 Identities=13% Similarity=0.126 Sum_probs=225.7
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEecCCCCCChHHHHH---hcCCeEEEecccCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPEMAR---IADATPVILPTRISE 93 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~~~~vl~~~~~~~~~~~~~~---~~g~~v~~i~~~~~~ 93 (352)
+.++++++ .++++|++++|+++++..++.++. ++||+|+++.|+|+++...++ ..|.+++.++++.
T Consensus 50 ~~la~~~g-----~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-- 122 (382)
T 4eb5_A 50 EKVAKLVN-----GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-- 122 (382)
T ss_dssp HHHHHHHT-----CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT--
T ss_pred HHHHHHhC-----CCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC--
Confidence 88888886 556899999999999999999987 889999999999998876665 4799999999863
Q ss_pred CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 94 ~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
++.+|+++|++++++++++|++++|+||||.++| +++|.++|+++ |++ |+|++|+. +..+..+.. .+
T Consensus 123 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~-i~D~a~~~----g~~~~~~~~----~~ 189 (382)
T 4eb5_A 123 YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP---VEEISEVLAGK-AAL-HIDATASV----GQIEVDVEK----IG 189 (382)
T ss_dssp TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHTTS-SEE-EEECTTTB----TTBCCCHHH----HT
T ss_pred CCccCHHHHHHHhcCCCeEEEEeccCCCccccCC---HHHHHHHHHHC-CCE-EEEcchhc----CCcccCccc----cC
Confidence 4568999999999888999999999999999999 89999999999 999 99999983 221222221 23
Q ss_pred ceEEEeccccccccccceeEEEEcChhH-HHHHHh----hhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNK----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 248 (352)
.++++.|+||.+|.+| +|+++++++. +..... .......+++...+.++.++++. ..+++++++++++++
T Consensus 190 ~di~~~s~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~ 264 (382)
T 4eb5_A 190 ADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEI---TAMEWREEAERLRRL 264 (382)
T ss_dssp CSEEEEETGGGTCCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred CCEEEeehHHhcCCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHH
Confidence 4589999999877445 7888887663 211100 01122345666677776677764 234578888999999
Q ss_pred HHHHHHHhcccCCceecCCCC---ceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--------
Q 018665 249 RDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------- 317 (352)
Q Consensus 249 ~~~l~~~l~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-------- 317 (352)
++++.+.|+++|++++..+.. +.++++.+++. +..++.+.|.++ ||.+.+|..|..
T Consensus 265 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~ 331 (382)
T 4eb5_A 265 RDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI------------EGESIVLSLDMA-GIQASTGSACSSKTLQPSHV 331 (382)
T ss_dssp HHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTS------------CHHHHHHHHHHH-TCBCBCCCGGGTSSCCCCHH
T ss_pred HHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCc------------CHHHHHHHHHHC-CEEEeccccccCCCCcccHH
Confidence 999999999988888776542 44567777642 778899998865 999999875432
Q ss_pred -----------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 318 -----------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 318 -----------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
++++||+++. +++++++++++|++++++++.
T Consensus 332 ~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 332 LMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp HHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4799999995 899999999999999887653
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-34 Score=261.61 Aligned_cols=289 Identities=17% Similarity=0.174 Sum_probs=227.7
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC----CCCEEEecCCCCCChHHHH---HhcCCeEEEecccCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISE 93 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~~~~vl~~~~~~~~~~~~~---~~~g~~v~~i~~~~~~ 93 (352)
+.++++++ .++++|++++|+++|+..++.++.+ +||+|+++.++|.++...+ +..|.+++.++++.
T Consensus 75 ~~la~~~~-----~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-- 147 (423)
T 3lvm_A 75 NQIADLVG-----ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-- 147 (423)
T ss_dssp HHHHHHHT-----CCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--
T ss_pred HHHHHHcC-----CCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--
Confidence 88888886 5678999999999999999998873 7999999999999988777 55599999999874
Q ss_pred CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 94 ~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
++.+|+++|+++++++++++++++|+||||.++| +++|+++|+++ |+++|+||+++.. ........ .+
T Consensus 148 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~~----~~~~~~~~----~~ 215 (423)
T 3lvm_A 148 NGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQD---IAAIGEMCRAR-GIIYHVDATQSVG----KLPIDLSQ----LK 215 (423)
T ss_dssp TSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHH-TCEEEEECTTTTT----TSCCCTTT----SC
T ss_pred CCccCHHHHHHhcCCCcEEEEEeCCCCCCccccC---HHHHHHHHHHc-CCEEEEEhhhhcC----CCCcChhh----cC
Confidence 5568999999999999999999999999999999 89999999999 9999999998752 11112211 34
Q ss_pred ceEEEeccccccccccceeEEEEcChhHHHHHHhhh-------hccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 246 (352)
.++++.|+||.+|.+| +|+++++++.++.+.... .....+++...+.++.++++. ....++++.++++
T Consensus 216 ~di~~~s~sK~~g~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~ 290 (423)
T 3lvm_A 216 VDLMSFSGHKIYGPKG--IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMATEMERLR 290 (423)
T ss_dssp CSEEEEESTTTTSCSS--CEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred CCEEEechHHhcCCCC--eEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 5699999999876444 899999887665554332 123345677777777777764 2345788899999
Q ss_pred HHHHHHHHHhcccCCceecCCCC---ceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC------
Q 018665 247 ERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------ 317 (352)
Q Consensus 247 ~~~~~l~~~l~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~------ 317 (352)
++++++.+.|++++++.+..+.. +.++++.++.. +..++.+.|.+ |.+.+|..|..
T Consensus 291 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~l~~---i~v~~g~~~~~~~~~~~ 355 (423)
T 3lvm_A 291 GLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV------------EGESLIMALKD---LAVSSGSACTSASLEPS 355 (423)
T ss_dssp HHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTS------------CHHHHHHHTTT---EECBCCCC-----CCCC
T ss_pred HHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCC------------CHHHHHHHHhh---heeccCccccCCCcccc
Confidence 99999999999988988876553 33455555432 67888887764 88888876544
Q ss_pred -------------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 318 -------------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 318 -------------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
++++||+++. ++++++++++.|++++++++.
T Consensus 356 ~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 356 YVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp HHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 3789999986 889999999999999988765
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=253.07 Aligned_cols=291 Identities=12% Similarity=0.081 Sum_probs=228.5
Q ss_pred CCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeE
Q 018665 5 RVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 84 (352)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v 84 (352)
+...+..++| +.++++++ + + +.+++++|++++..++.++.++||.|+++.|+|..+...++..|.++
T Consensus 81 g~~~~~~~l~------~~la~~~g-----~-~-~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~ 147 (384)
T 1bs0_A 81 GYSVVHQALE------EELAEWLG-----Y-S-RALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQL 147 (384)
T ss_dssp CCCHHHHHHH------HHHHHHHT-----C-S-EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEE
T ss_pred CChHHHHHHH------HHHHHHhC-----C-C-cEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCE
Confidence 3445667788 99999986 3 2 45555666899999999999999999999999999999999999999
Q ss_pred EEecccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 85 VILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 85 ~~i~~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+.+|. .|++.|++.+++ +++++++++|+||||.++| +++|.++|+++ |+++|+||+|+.+.+....
T Consensus 148 ~~~~~-------~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~~~~ 216 (384)
T 1bs0_A 148 RRFAH-------NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP---LAEIQQVTQQH-NGWLMVDDAHGTGVIGEQG 216 (384)
T ss_dssp EEECT-------TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTTTTTSSGGG
T ss_pred EEeCC-------CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC---HHHHHHHHHHc-CcEEEEECCcccceecCCC
Confidence 99874 378899988864 3778888999999999999 89999999999 9999999999865432111
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhh--ccccCCChHHHHHHHHHhcccCCChH--H
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGE--V 237 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 237 (352)
......... +.+++++|+||.+|++| ||+++++++++.+..... .++.+++++.+.++.++++. .. +
T Consensus 217 ~~~~~~~~~--~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~----~~~~~ 287 (384)
T 1bs0_A 217 RGSCWLQKV--KPELLVVTFGKGFGVSG---AAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAV----IRSDE 287 (384)
T ss_dssp CCHHHHTTC--CCSEEEEESSSTTSSCC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHH----HHSHH
T ss_pred CchHHhcCC--CCcEEEeeccchhhccC---cEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHH----Hhccc
Confidence 111111111 23499999999998555 999999999888876432 22336888888888888875 23 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC
Q 018665 238 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~ 317 (352)
.++.+++++++++++.+.|+++ ++++.. ..+.++|+.++... +..++.+.|.++ ||.+.++..++.
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~-----------~~~~l~~~l~~~-gi~v~~~~~~~~ 353 (384)
T 1bs0_A 288 GDARREKLAALITRFRAGVQDL-PFTLAD-SCSAIQPLIVGDNS-----------RALQLAEKLRQQ-GCWVTAIRPPTV 353 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-SCEECS-CCSSBCCEEEESHH-----------HHHHHHHHHHHT-TEECCEECTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHHhc-CCcccC-CCCCEEEEEeCCHH-----------HHHHHHHHHHHC-CcEEEeecCCCC
Confidence 6788899999999999999988 777764 45566777776431 577899999876 999999886643
Q ss_pred ---CCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 318 ---DTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 318 ---~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
.+++||+++. +++++++++++|+++
T Consensus 354 ~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 354 PAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp CTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 3689999986 899999999999875
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=254.07 Aligned_cols=295 Identities=15% Similarity=0.136 Sum_probs=229.5
Q ss_pred ChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCCh--HHHHHhcCCeEEEe
Q 018665 10 TLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVIL 87 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~--~~~~~~~g~~v~~i 87 (352)
..++| +.++++++ .+.+++++++|+|+++++..++.++.+ |+|+++++.|+++ ...++..|.+++.+
T Consensus 35 ~~~l~------~~la~~~g---~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~~~~~~~~~~g~~~~~v 103 (353)
T 2yrr_A 35 NRAIQ------ERLAALFD---PGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQRVAEMAALHGLDPEVL 103 (353)
T ss_dssp HHHHH------HHHHHHHC---CCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHH------HHHHHHhC---CCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHcCCceEEE
Confidence 45566 88888875 222367899999999999999998876 8899999998874 45668899999999
Q ss_pred cccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccc
Q 018665 88 PTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 88 ~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
+++. ++.+|+++|++.+++ ++++|++++|+||||.++| +++|.++|+++ |+++|+|++|+.. ..+.++.
T Consensus 104 ~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~-~~~li~D~a~~~~----~~~~~~~ 173 (353)
T 2yrr_A 104 DFPP--GEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP---AEAIGALAKEA-GALFFLDAVTTLG----MLPFSMR 173 (353)
T ss_dssp ECCT--TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHH-TCEEEEECTTTTT----TSCCCHH
T ss_pred eCCC--CCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC---HHHHHHHHHHc-CCeEEEEcCcccc----ccccccc
Confidence 9864 456899999999987 8999999999999999999 88999999999 9999999999632 2222222
Q ss_pred cCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHh--------------h-hhccccCCChHHHHHHHHHhccc
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK--------------I-QSQFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~l~~~ 231 (352)
.. +.++++.|++|+++ ++.++|++++++++++.+.. . ......+++...+.++.++++..
T Consensus 174 ~~----~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 248 (353)
T 2yrr_A 174 AM----GVDYAFTGSQKCLS-APPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLV 248 (353)
T ss_dssp HH----TCSEEECCTTSTTC-CCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHH
T ss_pred cc----CceEEEecCccccc-CCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 21 33588999999764 33347999999998876541 0 12333467777777777777641
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC--CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 232 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
....+++.+++++++++++.+.|+++ |+++..+. .+++++++++... +..++.+.|.++ ||.+
T Consensus 249 --~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~-gi~v 313 (353)
T 2yrr_A 249 --LEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEGV-----------DADRLVRALYAE-GVAV 313 (353)
T ss_dssp --HHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTTC-----------CHHHHHHHHHHT-TEEC
T ss_pred --HHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCCC-----------CHHHHHHHHHHC-CEEE
Confidence 12237788899999999999999987 88877654 5666778886432 688999999877 9999
Q ss_pred ccCCCCCCCCeEEEEeec--CHHHHH-HHHHHHHHHHhh
Q 018665 310 VPGDAFGDDTCIRISYAA--SLTTLQ-AAVERIKKGLLT 345 (352)
Q Consensus 310 ~~g~~~~~~~~iRi~~~~--~~~~l~-~~~~~l~~~~~~ 345 (352)
.+|..+..++++|++++. ++++++ +++++|+++++.
T Consensus 314 ~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 314 AGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp EECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred eCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 999877678899999953 778888 999999998864
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=257.46 Aligned_cols=301 Identities=15% Similarity=0.132 Sum_probs=227.4
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHhcC
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
|+...+..++| +.+|++++ .+++|++++|++ ++..++..+. .+||.|+++.|+|.++...++..|
T Consensus 87 ~~~~~~~~~l~------~~la~~~~------~~~~i~~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g 153 (401)
T 2bwn_A 87 SGTTAYHRRLE------AEIAGLHQ------KEAALVFSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNA 153 (401)
T ss_dssp BCCBHHHHHHH------HHHHHHTT------CSEEEEESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSC
T ss_pred cCChHHHHHHH------HHHHHHhC------CCcEEEECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcC
Confidence 44455677888 99999986 357788866655 7777766653 588999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhcc----CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 157 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~----~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~ 157 (352)
.+++.++.+ |++.+++.++ +++++|++++|+||||.++| +++|.++|+++ |+++|+||+|+...+
T Consensus 154 ~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~ 222 (401)
T 2bwn_A 154 GPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP---IKEICDIAEEF-GALTYIDEVHAVGMY 222 (401)
T ss_dssp CCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC---HHHHHHHHHHH-TCEEEEECTTTTTTS
T ss_pred CeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC---HHHHHHHHHHc-CCEEEEecccccccc
Confidence 999999863 6778887775 57899999999999999999 89999999999 999999999995433
Q ss_pred CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhh--ccccCCChHHHHHHHHHhcccCCCh
Q 018665 158 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
.......+.........+++++|+||.+|++| ||+++++++++.+..... .++.+.+++.+.++.++++.. ..
T Consensus 223 ~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~ 297 (401)
T 2bwn_A 223 GPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFL--KT 297 (401)
T ss_dssp STTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHH--TS
T ss_pred CCCCceeeeccCccccCcEEEeechhhccCCC---CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHH--Hh
Confidence 22211111111111124689999999998766 999999988888765332 223345567777777777641 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
..+++++++++++++++.+.|+++ |+++..+.++ ++++.+++.. +..++.+.|.+++||.+.|+..+
T Consensus 298 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~L~~~~gi~v~~~~~~ 364 (401)
T 2bwn_A 298 AEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSH-IVPVVIGDPV-----------HTKAVSDMLLSDYGVYVQPINFP 364 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSS-CEEEECCCHH-----------HHHHHHHHHHHHHCEECCEECTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCC-eEEEEeCChH-----------HHHHHHHHHHhcCCEEEeecCCC
Confidence 335788889999999999999988 8888766665 5788876421 56789989874459999998766
Q ss_pred CCC---CeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 316 GDD---TCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 316 ~~~---~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+.+ +++|++++. +++++++++++|+++++++
T Consensus 365 ~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 365 TVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp TSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred CCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 533 589999995 8999999999999988654
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=252.68 Aligned_cols=298 Identities=15% Similarity=0.165 Sum_probs=232.9
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecC-CCCCC-hHHHHHhcCCeEE
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA-PFWVS-YPEMARIADATPV 85 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~-~~~~~-~~~~~~~~g~~v~ 85 (352)
.+..++| +.++++++ .+.+++++++++|+++++..++.++.++||+|++++ +.|.. +...++..|.+++
T Consensus 37 ~~~~~l~------~~la~~~g---~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~ 107 (366)
T 1m32_A 37 GVVEQIR------QQLTALAT---ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHH 107 (366)
T ss_dssp TTHHHHH------HHHHHHHC---SSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHH------HHHHHHhC---CCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceE
Confidence 5667788 99999985 111235899999999999999999998999988776 55544 5677888999999
Q ss_pred EecccCCCCcccCHHHHHhhccC--CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 86 ILPTRISENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~~--~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
.++++. ++.+|+++|++++++ +++++++++++||||.++| +++|.++|+++ |+++|+||+|+... .+.
T Consensus 108 ~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~~~----~~~ 177 (366)
T 1m32_A 108 AYDCGE--VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP---IDEVGALAHRY-GKTYIVDAMSSFGG----IPM 177 (366)
T ss_dssp EEECCT--TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHH-TCEEEEECTTTTTT----SCC
T ss_pred EEeCCC--CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecC---HHHHHHHHHHc-CCEEEEECCccccC----cCc
Confidence 999863 456899999999975 5788999999999999999 89999999999 99999999997532 111
Q ss_pred ccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh------------------hccccCCChHHHHHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------------------SQFTSGASSISQKAGV 225 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 225 (352)
.+. ..+.++++.|+||+++ ++.++|++++++++++.+.... ....++++...+.++.
T Consensus 178 ~~~----~~~~di~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 252 (366)
T 1m32_A 178 DIA----ALHIDYLISSANKCIQ-GVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFA 252 (366)
T ss_dssp CTT----TTTCSEEEEESSSTTC-CCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHH
T ss_pred ccc----ccCccEEEecCccccc-CCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHH
Confidence 221 1245699999999874 3446799999998876654321 0112467788887788
Q ss_pred HHhcccCCChHH--HHHHHHHHHHHHHHHHHHhcccCCceecCC---CCceEEEeecCC--ccCCcccCCCCCCChHHHH
Q 018665 226 AALGLGYAGGEV--VSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFST--YYGSEAEGFGKIENSESLC 298 (352)
Q Consensus 226 ~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~---~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 298 (352)
++++. ..+. +++.+++++++++++.+.|+++ ++.+..+ ..++++++.+++ .. +..++.
T Consensus 253 ~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 317 (366)
T 1m32_A 253 QALKE---LAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQY-----------RFSEFY 317 (366)
T ss_dssp HHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTTC-----------CHHHHH
T ss_pred HHHHH---HHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCccCCC-----------CHHHHH
Confidence 88765 1233 6778889999999999999987 8777654 357678888874 21 678899
Q ss_pred HHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 299 RYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 299 ~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+.|.++ ||.+.+|..+ .++++|++++. +++++++++++|+++++++
T Consensus 318 ~~l~~~-gi~v~~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 318 RRLKEQ-GFVIYPGKVS-QSDCFRIGNIGEVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp HHHHHT-TEECEECCCS-SSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHC-CEEEECCcCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999876 9999998766 57899999996 7899999999999988754
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=251.66 Aligned_cols=288 Identities=13% Similarity=0.137 Sum_probs=222.7
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCCEEEecCCCCCChHHHHHh---cCCeEEEecccCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPEMARI---ADATPVILPTRISE 93 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~~~~vl~~~~~~~~~~~~~~~---~g~~v~~i~~~~~~ 93 (352)
+.++++++ .++++|++++|+++++..++.++. ++||+|+++.+.|+++...++. .|.+++.++++ .
T Consensus 50 ~~la~~~~-----~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~ 122 (382)
T 4hvk_A 50 EKVAKLVN-----GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--K 122 (382)
T ss_dssp HHHHHHTT-----CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC--T
T ss_pred HHHHHHcC-----CCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC--C
Confidence 77777765 567889999999999999999987 8999999999999988865544 69999999987 3
Q ss_pred CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 94 ~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
++.+|+++|+++++++++++++++|+||||.+.| +++|.++|+++ |+ +|+|++++.. .....+.. .+
T Consensus 123 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~-~~-li~D~a~~~~----~~~~~~~~----~~ 189 (382)
T 4hvk_A 123 YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP---VEEISEVLAGK-AA-LHIDATASVG----QIEVDVEK----IG 189 (382)
T ss_dssp TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHSSS-SE-EEEECTTTBT----TBCCCHHH----HT
T ss_pred CCCcCHHHHHHHhccCceEEEEECCCCCceeeCC---HHHHHHHHHHc-CE-EEEEhHHhcC----CCCCCchh----cC
Confidence 4568999999999999999999999999999999 88999999999 99 9999998742 11122211 23
Q ss_pred ceEEEeccccccccccceeEEEEcChhHHHHHHhh-------hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 246 (352)
.++++.|+||.+|.+| +|+++++++. .+... ......+++...+.++.+++.. ..+++++..++++
T Consensus 190 ~d~~~~s~~K~~g~~g--~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~ 262 (382)
T 4hvk_A 190 ADMLTISSNDIYGPKG--VGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEI---TAMEWREEAERLR 262 (382)
T ss_dssp CSEEEEESGGGTSCTT--CEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred CCEEEEeHHHhcCCCc--eEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHH---HHhhHHHHHHHHH
Confidence 4599999999877445 6777765543 11111 1122345677777777777764 2467888999999
Q ss_pred HHHHHHHHHhcccCCceecCCCC---ceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC------
Q 018665 247 ERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------ 317 (352)
Q Consensus 247 ~~~~~l~~~l~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~------ 317 (352)
++++++.+.|++++++.+..+.. +.++++.+++. +..++.+.|.++ ||.+.+|..|..
T Consensus 263 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~ 329 (382)
T 4hvk_A 263 RLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI------------EGESIVLSLDMA-GIQASTGSACSSKTLQPS 329 (382)
T ss_dssp HHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC------------CHHHHHHHHHHT-TCBCBCC--------CCC
T ss_pred HHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC------------CHHHHHHHHHHC-CEEEeeCCccCCCCCcch
Confidence 99999999999988988876543 33456666543 788899988865 999999876643
Q ss_pred -------------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 318 -------------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 318 -------------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
++++|++++. ++++++++++.|++++++++.
T Consensus 330 ~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 330 HVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp HHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4789999996 889999999999999987754
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=252.44 Aligned_cols=293 Identities=13% Similarity=0.060 Sum_probs=227.2
Q ss_pred CChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh---cCCCCEEEecCCCCCChHHHHHh----cC
Q 018665 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYPEMARI----AD 81 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~~~~~~vl~~~~~~~~~~~~~~~----~g 81 (352)
...+++ +.++++++ .++++|++++|+++++..++.++ .++||+|+++.|+|.++...+.. .|
T Consensus 70 ~~~~l~------~~la~~~g-----~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g 138 (406)
T 3cai_A 70 VLDAAR------EAVADLVN-----ADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYG 138 (406)
T ss_dssp HHHHHH------HHHHHHHT-----CCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHB
T ss_pred HHHHHH------HHHHHHhC-----CCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcC
Confidence 345566 99999986 56689999999999999999887 78899999999999987765554 79
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
.+++.++++. .++.+|+++|++++++++++|++++|+||||.++| +++|.++|+++ |+++|+|++|+. +..
T Consensus 139 ~~v~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~----g~~ 209 (406)
T 3cai_A 139 AKVKWAEVDI-ETGELPTWQWESLISKSTRLVAVNSASGTLGGVTD---LRAMTKLVHDV-GALVVVDHSAAA----PYR 209 (406)
T ss_dssp CEEEEECCCT-TTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCC---CHHHHHHHHHT-TCEEEEECTTTT----TTC
T ss_pred CeEEEEecCc-ccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCC---HHHHHHHHHHc-CCEEEEEccccc----CCC
Confidence 9999999873 34568999999999989999999999999999999 89999999999 999999999974 222
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeE-EEEcChhHHHHHHhhhh---------ccccCCChHHHHHHHHHhccc
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVAACNKIQS---------QFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g-~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~ 231 (352)
...+.. .+.++++.|+||.+| ++ +| ++++++++++.+..... ....+++...+.++.++++..
T Consensus 210 ~~~~~~----~~~d~~~~s~~K~~g-~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~ 282 (406)
T 3cai_A 210 LLDIRE----TDADVVTVNAHAWGG-PP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYL 282 (406)
T ss_dssp CCCHHH----HCCSEEEEEGGGGTS-CS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred CCCchh----cCCCEEEeehhhhcC-CC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHH
Confidence 122222 235689999999876 54 88 99999988877654321 113456776666666666531
Q ss_pred CC-C-----------hHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC---CceEEEeecCCccCCcccCCCCCCChHH
Q 018665 232 YA-G-----------GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSES 296 (352)
Q Consensus 232 ~~-~-----------~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
.. . ..+++++.++++++++++.+.|++++++.+..+. .+ ++++.+++. +..+
T Consensus 283 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~ 349 (406)
T 3cai_A 283 AALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHKV------------PADR 349 (406)
T ss_dssp HTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCS-EEEEEETTB------------CHHH
T ss_pred HHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCC-EEEEEECCc------------CHHH
Confidence 10 0 0157888889999999999999998888877653 44 577777643 6888
Q ss_pred HHHHHHHccCEEeccCC------CCCC---CCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 297 LCRYLLDKAQVALVPGD------AFGD---DTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 297 ~~~~l~~~~gi~i~~g~------~~~~---~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
+.+.|.++ ||.+.+|. .++. .+++|++++. ++++++++++.|+++
T Consensus 350 ~~~~L~~~-gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 350 VVQRLADN-GILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp HHHHHHHT-TEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHC-CcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 99998765 99999886 2222 4799999998 889999999998753
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=249.30 Aligned_cols=290 Identities=14% Similarity=0.128 Sum_probs=220.6
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCC-------------CCEEEecCCCCCChHHHHHhcCCeEEE
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSP-------------GDEVIIPAPFWVSYPEMARIADATPVI 86 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~-------------~~~vl~~~~~~~~~~~~~~~~g~~v~~ 86 (352)
+.+++++. ..+ .++++|++++|+++++..++.++..+ +|+|+++.|+|.++...++..|.+++.
T Consensus 72 ~~l~~~la~~~~--~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~ 149 (397)
T 3f9t_A 72 EKAVALLGSLLN--NKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIY 149 (397)
T ss_dssp HHHHHHHHHHTT--CTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHhC--CCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEE
Confidence 44444444 333 56789999999999999999998765 899999999999999999999999999
Q ss_pred ecccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc-cc
Q 018665 87 LPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TS 164 (352)
Q Consensus 87 i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~-~~ 164 (352)
++++. ++.+|+++|++++++ +++++++++|+||||.+.| +++|.++|+++ |+++|+||+|+++....... .+
T Consensus 150 v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~~~~~~~~~~~~ 223 (397)
T 3f9t_A 150 APIKE--DYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDN---IEELSKIAKEN-NIYIHVDAAFGGLVIPFLDDKYK 223 (397)
T ss_dssp ECBCT--TSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCC---HHHHHHHHHHH-TCEEEEECTTGGGTGGGCCGGGC
T ss_pred EeeCC--CCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCC---HHHHHHHHHHh-CCeEEEEccccchhhhhcccccc
Confidence 99874 466899999999988 8999999999999999999 99999999999 99999999998754321110 00
Q ss_pred cc----cCC-CCCCceEEEeccccccccccceeEEEEcChh-HHHHHHhhhhccc--------c---CCChHHHHHHHHH
Q 018665 165 FA----SLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQSQFT--------S---GASSISQKAGVAA 227 (352)
Q Consensus 165 ~~----~~~-~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~ 227 (352)
+. ... .. +.++++.|++|.++ +|.++|+++++++ +.+.+........ . +.+...+.++...
T Consensus 224 ~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 301 (397)
T 3f9t_A 224 KKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRY 301 (397)
T ss_dssp CTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHH
T ss_pred cccccccccccc-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHH
Confidence 00 000 11 34588999999886 7779999987654 4443322111111 1 1234455555554
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
+. ...+++..++++++++++.+.|+++ ++.+..+..+.++++.++ +..++.+.|.++ ||
T Consensus 302 ~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~-gi 360 (397)
T 3f9t_A 302 LG-----REGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDE--------------DYKEVCKKLRDR-GI 360 (397)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEECT--------------THHHHHHHHHHT-TC
T ss_pred Hh-----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEeC--------------CHHHHHHHHHhC-Ce
Confidence 43 5667888888999999999999998 888665566666777764 467888998876 99
Q ss_pred EeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHh
Q 018665 308 ALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~ 344 (352)
.+.++.. ++++|++++. +++++++++++|+++++
T Consensus 361 ~v~~~~~---~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 361 YVSVCNC---VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp BCEECSS---SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEeccCC---CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 9988753 6899999995 89999999999999875
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=244.82 Aligned_cols=292 Identities=12% Similarity=0.036 Sum_probs=218.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcCCeEEEecccCCCCcccC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLD 98 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i~~~~~~~~~~d 98 (352)
+.+++++ |.+.+.+.+++++|++++++.++.+++++||+|+++.|.|++.. ..+...|.+++.++.+ .++.+|
T Consensus 59 ~~la~~~---g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d 133 (376)
T 3f0h_A 59 KFMLEYA---KAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLE--HGKKLT 133 (376)
T ss_dssp HHHHHHH---TCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECC--TTCCCC
T ss_pred HHHHHHh---CCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCC--CCCCCC
Confidence 5555555 43322244566899999999999999999999999998777644 4577889999999986 446689
Q ss_pred HHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEE
Q 018665 99 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 178 (352)
Q Consensus 99 ~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (352)
+++|++.++++++++++++|+||||.++| +++|.++|+++ |+++|+|++++.+.. ...+.. .+.++++
T Consensus 134 ~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~~~~~~~~----~~~~~~----~~~d~~~ 201 (376)
T 3f0h_A 134 KEKLYEYDNQNFTGLLVNVDETSTAVLYD---TMMIGEFCKKN-NMFFVCDCVSAFLAD----PFNMNE----CGADVMI 201 (376)
T ss_dssp HHHHHTTTTSCCCEEEEESEETTTTEECC---HHHHHHHHHHT-TCEEEEECTTTTTTS----CCCHHH----HTCSEEE
T ss_pred HHHHHHhhccCceEEEEecccCCcceecC---HHHHHHHHHHc-CCEEEEEcCccccCc----cccccc----cCccEEE
Confidence 99999999889999999999999999999 99999999999 999999999876422 111111 2345899
Q ss_pred eccccccccccceeEEEEcChhHHHHHHhhhh-----------------ccccCCChHHHHHHHHHhcccCCChH-HHHH
Q 018665 179 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS-----------------QFTSGASSISQKAGVAALGLGYAGGE-VVSK 240 (352)
Q Consensus 179 ~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 240 (352)
.|++|.++ ++.++|++++++++++.+..... .+..+++...+.++.++++.. ... .+++
T Consensus 202 ~s~~K~l~-~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~ 278 (376)
T 3f0h_A 202 TGSQKVLA-CPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEI--KKHGGADA 278 (376)
T ss_dssp EETTTTTC-CCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHTTHHHH
T ss_pred ecCccccc-CCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhcCHHH
Confidence 99999997 34457889999999888764211 112344554445555555431 122 5788
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCc-eEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGA-FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
+.++++++++++.+.|+++ ++.+..+... .++.+..++. +..++.+.|.+++||.+.+|.....++
T Consensus 279 ~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~l~~~~gi~v~~g~~~~~~~ 345 (376)
T 3f0h_A 279 EVARIASQAADFRAKIKDL-PFELVSESPANGVTSVHPTTA------------NAYDIFLKLKDEYGIWICPNGGEMKDT 345 (376)
T ss_dssp HHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEEESSS------------CHHHHHHHHHHHSSEECEECCGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEeCCCC------------CHHHHHHHHHHhCCEEEecCccccCCC
Confidence 8899999999999999987 6766654332 2222332221 788999999987799999985444578
Q ss_pred eEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 320 CIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 320 ~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
++|++++. +++++++++++|++++++
T Consensus 346 ~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 346 IFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999975 899999999999999875
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=248.94 Aligned_cols=294 Identities=17% Similarity=0.117 Sum_probs=227.0
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEE
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~ 86 (352)
+....+++ +.++++++ .+..++++++++++..++.++.++||.|+++.|+|.++...++..|.+++.
T Consensus 103 ~~~~~~l~------~~la~~~g-------~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~ 169 (409)
T 3kki_A 103 DYDKPMIE------KRLAKFTG-------FDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHP 169 (409)
T ss_dssp TTTSCHHH------HHHHHHHT-------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred cHHHHHHH------HHHHHHhC-------CCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEE
Confidence 34455666 88888875 234566677789999999999999999999999999999999999999988
Q ss_pred ecccCCCCcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 87 LPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 87 i~~~~~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
++. .|+++|++++++ +++++++++|+||||.+.| +++|.++|+++ |+++|+||+|+++.+........
T Consensus 170 ~~~-------~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~---l~~l~~la~~~-~~~li~De~~~~g~~g~~g~~~~ 238 (409)
T 3kki_A 170 FMH-------NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAP---LAELVNISKEF-GCALLVDESHSLGTHGPNGAGLL 238 (409)
T ss_dssp ECT-------TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSGGGCCHH
T ss_pred ecC-------CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCcch
Confidence 864 489999999975 5899999999999999999 99999999999 99999999998743321111111
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhh--ccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
.......+.++++.|+||.+|.+ .|++++++++++.+..... .++.+.++..+.++.++++. .+..+++++
T Consensus 239 ~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~----~~~~~~~~~ 311 (409)
T 3kki_A 239 AELGLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEI----IESADNRRQ 311 (409)
T ss_dssp HHHTCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHH----HHHCHHHHH
T ss_pred hhcCCCCCCCEEEeecchhhCCC---ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHH----HhcCHHHHH
Confidence 11111124458999999999844 4999999988887765432 23344677777777777765 233367788
Q ss_pred HHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC---CCCe
Q 018665 244 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTC 320 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~---~~~~ 320 (352)
+++++++++.+.|+++ ++.+. ..+.++|+.++... +..++.+.|.++ ||.+.+...+. ..++
T Consensus 312 ~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~-----------~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~ 376 (409)
T 3kki_A 312 HLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGDER-----------NTEKVRDYLESN-GVFGSVFCRPATSKNKNI 376 (409)
T ss_dssp HHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEESHH-----------HHHHHHHHHHHT-TEECEEECTTSSCTTCEE
T ss_pred HHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCCHH-----------HHHHHHHHHHHC-CceEeeeCCCCcCCCCcE
Confidence 8999999999999988 77765 46667888876531 467899999987 99998755432 2469
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 321 IRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 321 iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+|++++. +++++++++++|+++++..
T Consensus 377 iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 377 IRLSLNSDVNDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred EEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999985 8999999999999999764
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=253.26 Aligned_cols=313 Identities=11% Similarity=0.084 Sum_probs=223.8
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHH---HhcCCCCEEEecCCCCCChH-HHHHh
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVL---AVCSPGDEVIIPAPFWVSYP-EMARI 79 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~---~l~~~~~~vl~~~~~~~~~~-~~~~~ 79 (352)
|+++.+..+++ +.+++++. + . .+++|++++|+++++..++. .+.+++ +|++++|+|+++. ..+..
T Consensus 80 ~~~~~~~~~l~------~~la~~~~--~-~-~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~ 148 (426)
T 1sff_A 80 VLAYEPYLELC------EIMNQKVP--G-D-FAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLAL 148 (426)
T ss_dssp TEECHHHHHHH------HHHHHHSS--C-S-SCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHH
T ss_pred ccCCHHHHHHH------HHHHHhCC--c-c-cccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhh
Confidence 55667778888 99999873 1 1 24899999999999999988 666765 8999999998765 45665
Q ss_pred cCCe-------------EEEecccCC---CCcccCHHHHHhhcc-----CCeeEEEEc-CCCCCcc-cCCCHHHHHHHHH
Q 018665 80 ADAT-------------PVILPTRIS---ENFLLDPKVLESKLT-----EKSRLLILC-SPSNPTG-SVYPKNLLDEIAR 136 (352)
Q Consensus 80 ~g~~-------------v~~i~~~~~---~~~~~d~~~l~~~l~-----~~~~~i~i~-~p~nptG-~~~~~~~l~~l~~ 136 (352)
.|.+ ++.++++.. .++.+|++.|+++++ +++++|+++ +++| || ..+|.+++++|.+
T Consensus 149 ~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~ 227 (426)
T 1sff_A 149 TGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRA 227 (426)
T ss_dssp SSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHH
T ss_pred cCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHH
Confidence 5543 667776531 134468999999886 466777664 4467 99 7889999999999
Q ss_pred HHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCC
Q 018665 137 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 216 (352)
Q Consensus 137 ~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~ 216 (352)
+|+++ |+++|+||+|+++.+.+.. .++... +..+.+.|+||.+| +|+|+||+++++++++.+.......++++
T Consensus 228 l~~~~-~~~li~De~~~~~~~~g~~-~~~~~~----~~~~di~s~sK~~~-~GlriG~~~~~~~~~~~l~~~~~~~~~~~ 300 (426)
T 1sff_A 228 LCDEH-GIMLIADEVQSGAGRTGTL-FAMEQM----GVAPDLTTFAKSIA-GGFPLAGVTGRAEVMDAVAPGGLGGTYAG 300 (426)
T ss_dssp HHHHH-TCEEEEECTTTTTTTTSSS-SGGGGT----TSCCSEEEECGGGG-TSSCCEEEEEEHHHHTTSCTTSBCCSSSS
T ss_pred HHHHc-CCEEEEechhhccCcccch-hhhhhc----CCCCCEEEEccccc-CCCceEEEEEcHHHHhhhccCCcCcCCCC
Confidence 99999 9999999999987665531 111111 11223559999999 49999999999998877754334456678
Q ss_pred ChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCC
Q 018665 217 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 292 (352)
Q Consensus 217 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 292 (352)
|++.+.++.++++.. .+ .+..++++++++.+.+.|++ ++.+....+. |+++|+++++....... ...
T Consensus 301 ~~~~~~a~~aal~~~---~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~---~~~ 371 (426)
T 1sff_A 301 NPIACVAALEVLKVF---EQ--ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHNKP---DAK 371 (426)
T ss_dssp CHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEEBGGGCTTSB---CHH
T ss_pred CHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCC---ChH
Confidence 999999998887641 11 23445566666666666654 3333334444 67788888531100000 001
Q ss_pred ChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 293 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 293 ~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
+..++.+.|.++ ||.+.||..+ ++++|++++. +++++++++++|++++++++
T Consensus 372 ~~~~l~~~l~~~-gi~v~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 372 LTAEIVARARDK-GLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIISQCFDEAK 425 (426)
T ss_dssp HHHHHHHHHHHT-TEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC-CcEEecCCCC--CCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 467788888875 9999998753 6899999873 99999999999999998764
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=244.98 Aligned_cols=278 Identities=18% Similarity=0.180 Sum_probs=215.3
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCC----------CCEEEecCCCCCChHHHHHhcCC--------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSP----------GDEVIIPAPFWVSYPEMARIADA-------- 82 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~----------~~~vl~~~~~~~~~~~~~~~~g~-------- 82 (352)
+.+++++ ..+++++++|+++++..++..+..+ +++|+++.++|+++...+...+.
T Consensus 85 ~~la~~~-------g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (392)
T 3ruy_A 85 EKVAKLT-------NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGF 157 (392)
T ss_dssp HHHHHHH-------TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTC
T ss_pred HHHHHhc-------CCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhcccc
Confidence 6666665 3789999999999999999876543 67999999999887766554422
Q ss_pred -----eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHH-HHHHHHHHHhCCCEEEEecccccccc
Q 018665 83 -----TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL-LDEIARIVAKHPRLLVLSDEIYEHII 156 (352)
Q Consensus 83 -----~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~-l~~l~~~~~~~~~~~livD~~~~~~~ 156 (352)
++..++. .|+++|++++++++++|++++|+||||.++|.++ +++|.++|+++ |+++|+||+|+++.
T Consensus 158 ~~~~~~~~~~~~-------~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~~ 229 (392)
T 3ruy_A 158 GPMLPGIIVIPY-------GDLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKE-NVLFVADEIQTGLG 229 (392)
T ss_dssp CSCCSSEEEECT-------TCHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTT-TCEEEEECTTTTTT
T ss_pred CCCCCCCeeeCc-------ccHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeechhCCC
Confidence 2333332 2899999999989999999999999999996555 99999999999 99999999998876
Q ss_pred cCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCCh
Q 018665 157 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
+.+... ....... ..+ +.++||.++ +| +|+|++++++++++.+.......+++++++.+.++.++++. .
T Consensus 230 ~~g~~~-~~~~~~~-~~d---~~~~SK~l~-gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~ 299 (392)
T 3ruy_A 230 RTGKVF-ACDWDNV-TPD---MYILGKALG-GGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV----L 299 (392)
T ss_dssp TTSSSS-GGGGGTC-CCS---EEEECGGGG-TTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHH----H
T ss_pred ccccch-hhhccCC-CCC---EEEEchhhh-CChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHH----H
Confidence 655422 1111111 122 347789986 56 89999999999988877666666778999999999999985 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc--CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~--~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
+. ++..++++++++++.+.|+++ +.+....+.+++ +++.+++ +..++.+.|.++ ||.+.|++
T Consensus 300 ~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~-~~~~~~~-------------~~~~l~~~l~~~-gi~v~~~~ 363 (392)
T 3ruy_A 300 EE-EKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGLF-IGIELNE-------------PARPYCEQLKAA-GLLCKETH 363 (392)
T ss_dssp HH-TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEETTE-EEEEESS-------------CSHHHHHHHHTT-TEECCCBT
T ss_pred Hh-hhHHHHHHHHHHHHHHHHHHhcCCCceEEEeeeeE-EEEEEcc-------------hHHHHHHHHHHC-CcEEecCC
Confidence 22 677888999999999999987 335555555554 5555654 567888888854 99999874
Q ss_pred CCCCCCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 314 AFGDDTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 314 ~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
++++|++++. +++++++++++|++++
T Consensus 364 ----~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 364 ----ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp ----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 7899999765 8999999999999886
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=240.23 Aligned_cols=305 Identities=14% Similarity=0.073 Sum_probs=224.8
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH--HHHh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE--MARI 79 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~--~~~~ 79 (352)
.|.+..+..+++ +.+++++. ..| .++++|++++|+++++..++.++.++||+|+++.|+|.++.. .++.
T Consensus 40 ~~~~~~g~~~~~------~~~~~~l~~~~g--~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~ 111 (359)
T 1svv_A 40 TQHAGYGQDSHC------AKAARLIGELLE--RPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEA 111 (359)
T ss_dssp CCCCSTTCSHHH------HHHHHHHHHHHT--CTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHH
T ss_pred hccccccccHHH------HHHHHHHHHHhC--CCCccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHhc
Confidence 466667777777 77777777 455 567899999999999999999999999999999999998887 5888
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCC-------eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEK-------SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~-------~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
.|.+++.++.+ ++.+|+++|++.++++ +++|++++| ||||.++|.+++++|+++|+++ |+++|+||+|
T Consensus 112 ~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~-~~~li~De~~ 186 (359)
T 1svv_A 112 TGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEH-GLYLFLDGAR 186 (359)
T ss_dssp TTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHH-TCEEEEECTT
T ss_pred CCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHh-CCEEEEEccc
Confidence 99999999974 4668999999999765 889999998 7999999999999999999999 9999999999
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh--hccccCCChHHHHHHHHHhcc
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ--SQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~ 230 (352)
.++..... ......+.......+++.|.+|..+ ..+.|+++.++++++.+.... ..+..+.+......+.++++
T Consensus 187 ~~~~~~~~-~~~~~~~~~~~~~d~~~~s~~K~g~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 262 (359)
T 1svv_A 187 LASALSSP-VNDLTLADIARLTDMFYIGATKAGG--MFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMK- 262 (359)
T ss_dssp HHHHHTST-TCCCCHHHHHHHCSEEEEECTTTTC--SSCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTS-
T ss_pred hhhhhcCC-CcchhhhhhhhcCCEEEEecccCCC--CCceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHh-
Confidence 65432111 1111100000122378889999743 356899999998877766532 11111222223333344444
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 310 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~ 310 (352)
....++.+++++++++++.+.| +.+++.+..+.+++++|++++ .++.+.|.+++||.+.
T Consensus 263 ----~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~gi~v~ 321 (359)
T 1svv_A 263 ----DNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE----------------NTMIAELNNDFDMYTV 321 (359)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE----------------HHHHHHHTTTEECEEE
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC----------------HHHHHHHHHhcCEEEE
Confidence 2445778888999999999999 567888887788888887643 4788888876688883
Q ss_pred cCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 311 PGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 311 ~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+ .....++++|++++. +++++++++++|+++++++
T Consensus 322 ~-~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 322 E-PLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp E-EETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred e-cccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 2 111235689999875 8999999999999988654
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=243.57 Aligned_cols=285 Identities=13% Similarity=0.124 Sum_probs=215.8
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHH---hc---CCC-CEEEecCCCCCChHHHHH
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLA---VC---SPG-DEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~---l~---~~~-~~vl~~~~~~~~~~~~~~ 78 (352)
+..+..+++ +.++++++ + ++++++++|+++++..++.+ +. ++| |+|++++|+|+.+...+.
T Consensus 68 ~~~~~~~l~------~~la~~~g-----~-~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~ 135 (375)
T 2eh6_A 68 ENPWQEELA------HKLVKHFW-----T-EGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSL 135 (375)
T ss_dssp CCHHHHHHH------HHHHHTSS-----S-CEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHH
T ss_pred CCHHHHHHH------HHHHhhcC-----C-CCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhh
Confidence 345566777 88888864 3 48999999999999998875 34 677 999999999998876655
Q ss_pred hcCCe-------------EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCE
Q 018665 79 IADAT-------------PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRL 144 (352)
Q Consensus 79 ~~g~~-------------v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~ 144 (352)
..+.. +..++. .|+++|++++++++++|++++++||||.+ .+.+++++|.++|+++ |+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~-~~ 207 (375)
T 2eh6_A 136 SATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEK-DV 207 (375)
T ss_dssp HHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHH-TC
T ss_pred hhcCCccccCCCCCCCCCceeCCC-------chHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHh-CC
Confidence 43321 222221 48999999998899999999999999999 5688899999999999 99
Q ss_pred EEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHH
Q 018665 145 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAG 224 (352)
Q Consensus 145 ~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (352)
++|+||+|+++...+.. .++..... ..+ + .|+||.++ +|+|+|++++++++++.+.......+++++++.+.++
T Consensus 208 ~li~De~~~~~~~~~~~-~~~~~~~~-~~d-~--~s~SK~~~-~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (375)
T 2eh6_A 208 LLIIDEVQTGIGRTGEF-YAYQHFNL-KPD-V--IALAKGLG-GGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAG 281 (375)
T ss_dssp EEEEECTTTTTTTTSSS-SGGGGGTC-CCS-E--EEECGGGG-TTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHH
T ss_pred EEEEeccccCCCCCCcc-hhhhhcCC-CCC-E--EEEccccc-CCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHH
Confidence 99999999976544321 12222221 122 2 27889999 7999999999998877765533334566788888888
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 225 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
.++++. .+ +..++++++++++.+.|++++. ... +..|.++|+++++ +..++.+.|.++
T Consensus 282 ~~~l~~----~~---~~~~~~~~~~~~l~~~L~~~~~-~~~-~~~g~~~~~~~~~-------------~~~~~~~~l~~~ 339 (375)
T 2eh6_A 282 TVVVDE----VE---KLLPHVREVGNYFKEKLKELGK-GKV-KGRGLMLGLELER-------------ECKDYVLKALEK 339 (375)
T ss_dssp HHHHHH----HH---HHHHHHHHHHHHHHHHHHHTTS-SEE-EEETTEEEEECSS-------------CCHHHHHHHHHT
T ss_pred HHHHHH----HH---HHHHHHHHHHHHHHHHHHHHhc-CCc-eEEEEEEEEEEcC-------------cHHHHHHHHHHC
Confidence 887764 22 6677888889999999988733 333 3456778888864 467888888864
Q ss_pred cCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 305 AQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 305 ~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
||.+.++ .++++|++++. +++++++++++|++++
T Consensus 340 -gi~~~~~----~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 340 -GLLINCT----AGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp -TEECEEE----TTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred -CCEEecC----CCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 9999886 37899999874 8999999999998763
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-31 Score=235.79 Aligned_cols=287 Identities=10% Similarity=0.076 Sum_probs=210.9
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH--HHhc--CCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM--ARIA--DATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~--~~~~--g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ .+++|++++|+++++..++.++.++||+|+++.|+|.++... +... |.+++.++.+ ++.
T Consensus 50 ~~la~~~g------~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~ 120 (356)
T 1v72_A 50 RKFCEIFE------RDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAK 120 (356)
T ss_dssp HHHHHHHT------SCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGC
T ss_pred HHHHHHhC------CCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCe
Confidence 66666664 245699999999999999999999999999999998776655 6776 9999999874 356
Q ss_pred cCHHHHHh-hccC-------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc--CCCCccccc
Q 018665 97 LDPKVLES-KLTE-------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFA 166 (352)
Q Consensus 97 ~d~~~l~~-~l~~-------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~--~~~~~~~~~ 166 (352)
+|+++|++ ++++ ++++|++++|+| ||.++|.+++++|+++|+++ |+++|+|++|..+.. .+..... .
T Consensus 121 ~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~~~~~~~~-~ 197 (356)
T 1v72_A 121 LDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSS-SLGLHMDGSRFANALVSLGCSPAE-M 197 (356)
T ss_dssp CCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHHHTCCTTT-T
T ss_pred EcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHc-CCeEEEEchhhHhHhccCCCCHHH-h
Confidence 89999999 8875 688999999886 99999999999999999999 999999999975421 1211111 1
Q ss_pred cCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcccc-CC-ChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS-GA-SSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
.+. ....+++.|+||. | ...+.|++++++++++.+.......+. .. +...+..+...++ .+...+..++
T Consensus 198 ~~~--~~~d~~~~s~sK~-g-~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~ 268 (356)
T 1v72_A 198 TWK--AGVDALSFGATKN-G-VLAAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLT-----DDLWLRNARK 268 (356)
T ss_dssp TGG--GTCCEEEECCGGG-T-CSSCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTS-----TTHHHHHHHH
T ss_pred hhh--hcCCEEEEecccC-C-CcCccEEEEECHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHH-----hhhHHHHHHH
Confidence 110 1122556799998 5 333445888899998887654332221 11 2222222333443 2334456677
Q ss_pred HHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEE
Q 018665 245 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324 (352)
Q Consensus 245 ~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~ 324 (352)
++++++++.+.|++++|+++..+..++++|++++ .++.+.|.++ ||.+.+|. ++ ++++|++
T Consensus 269 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~-gi~v~~g~-~~-~~~iRi~ 329 (356)
T 1v72_A 269 ANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD----------------SAMIDALLKA-GFGFYHDR-WG-PNVVRFV 329 (356)
T ss_dssp HHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC----------------HHHHHHHHHT-TCBCBCSS-SS-TTEEEEE
T ss_pred HHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC----------------HHHHHHHHhc-CeEEeccc-cC-CCeEEEE
Confidence 8888999999999888998877778888888753 2678888765 99999877 54 7899999
Q ss_pred eec--CHHHHHHHHHHHHHHHhhhC
Q 018665 325 YAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 325 ~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
++. +++++++++++|++++++.+
T Consensus 330 ~~~~~~~~~i~~~~~~l~~~l~~~~ 354 (356)
T 1v72_A 330 TSFATTAEDVDHLLNQVRLAADRTQ 354 (356)
T ss_dssp CCTTCCHHHHHHHHHHHHHTC----
T ss_pred ecCCCCHHHHHHHHHHHHHHHHhhc
Confidence 875 88999999999999887653
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=238.79 Aligned_cols=296 Identities=18% Similarity=0.231 Sum_probs=216.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH---HHHHh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARI 79 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~---~~~~~ 79 (352)
.|+++++..++| +.+|++++ .+++++++|+++++..++.++.++||+|+++.|+|.... ..++.
T Consensus 33 ~y~~~~~~~~l~------~~la~~~g-------~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 99 (347)
T 1jg8_A 33 VYGEDPTINELE------RLAAETFG-------KEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVL 99 (347)
T ss_dssp GGTCCHHHHHHH------HHHHHHHT-------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHH
T ss_pred ccCCChHHHHHH------HHHHHHhC-------CceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhhc
Confidence 577788888999 99999985 357888899999999999999999999999999986533 36778
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~npt-G~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
.|.+++.+ .+ .++.+|+++|++++++ ++++|++++|+||| |.++|.+++++|+++|+++ |+++|+|+++
T Consensus 100 ~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~-~~~li~D~a~ 175 (347)
T 1jg8_A 100 SGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEH-GINVHIDGAR 175 (347)
T ss_dssp TCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH-TCEEEEEETT
T ss_pred cCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHC-CCEEEeehhh
Confidence 89999888 43 3455899999999975 68999999999999 9999999999999999999 9999999987
Q ss_pred ccc--ccCCCCccccccCCCCCCceEEEeccccccccccceeE-EEEcChhHHHHHHhhhhccccC--CChHHHHHHHHH
Q 018665 153 EHI--IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVAACNKIQSQFTSG--ASSISQKAGVAA 227 (352)
Q Consensus 153 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g-~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 227 (352)
... .+.+. +...+....+ .++.|+||.++. + +| +++.++++++.+......++.+ .+...+.++..+
T Consensus 176 ~~~~~~~~~~---~~~~~~~~~d--~~~~s~sK~l~~-~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (347)
T 1jg8_A 176 IFNASIASGV---PVKEYAGYAD--SVMFCLSKGLCA-P--VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIA 247 (347)
T ss_dssp HHHHHHHHCC---CHHHHHHTCS--EEEEESSSTTCC-S--SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHH
T ss_pred hhcchhhcCC---ChHHhccccc--EEEEecccccCC-C--ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 531 11121 1111111122 445689999973 2 46 5667888888876654433322 344455555555
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceec-CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccC
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 306 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 306 (352)
++.. .+.+++ ..++++.+.+.|+++ ++.+. .+..+.++|++++... .+..++.+.|.++ |
T Consensus 248 l~~~---~~~~~~----~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~-g 308 (347)
T 1jg8_A 248 LTKM---VDRLKE----DHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNLK----------VNAHGFIEALRNS-G 308 (347)
T ss_dssp HHHS---STTHHH----HHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTSS----------SCHHHHHHHHHHH-T
T ss_pred HHHH---HHHHHH----HHHHHHHHHHHHHhc-CceeccCCCcceEEEEEccccc----------CCHHHHHHHHHHC-C
Confidence 5531 122222 234567778888777 76652 3445666888887410 1688999999865 9
Q ss_pred EEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 307 VALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 307 i~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
|.+.+++ ++++|++++. +++++++++++|+++++++
T Consensus 309 i~v~~~~----~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 309 VLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp EECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CEEecCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9998753 5789999975 8999999999999998764
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=248.45 Aligned_cols=285 Identities=15% Similarity=0.112 Sum_probs=204.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc----CCCC-EEEecCCCCCChHHHHHh---cCCeEEEecccCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC----SPGD-EVIIPAPFWVSYPEMARI---ADATPVILPTRIS 92 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~~~-~vl~~~~~~~~~~~~~~~---~g~~v~~i~~~~~ 92 (352)
+.++++++ .++++|++++|+++++..++.++. ++|| +|+++.+.|+++...+.. .|.+++.++++.
T Consensus 70 ~~la~~~~-----~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~- 143 (400)
T 3vax_A 70 EYLASTVS-----AEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP- 143 (400)
T ss_dssp HHHHHHTT-----CCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT-
T ss_pred HHHHHHcC-----CCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC-
Confidence 66777665 567899999999999999999987 8899 999999999988765554 699999999874
Q ss_pred CCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCC
Q 018665 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 172 (352)
Q Consensus 93 ~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
++.+|+++|+++++++++++++++|+||||.+.| +++|.++|+++ |+++|+|++|+.. .....+...
T Consensus 144 -~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~-~~~li~D~a~~~~----~~~~~~~~~---- 210 (400)
T 3vax_A 144 -SGRISVEGVMERLRPDTLLVSLMHVNNETGVIQP---VAELAQQLRAT-PTYLHVDAAQGYG----KVPGDLTTP---- 210 (400)
T ss_dssp -TCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHTTS-SCEEEEECTTTTT----TSGGGGGSC----
T ss_pred -CCCcCHHHHHHhcCCCceEEEEECCCCCceeeCc---HHHHHHHHHhc-CCEEEEEhhhhcC----CCCcChhhc----
Confidence 5568999999999999999999999999999999 89999999999 9999999999742 222222221
Q ss_pred CceEEEeccccccccccceeEEEE-cChh-HH---HHHHhh-------hhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 173 ERTLTVNGFSKAFAMTGWRLGYIA-GPKH-FV---AACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 173 ~~~i~~~s~sK~~g~~g~~~g~l~-~~~~-~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
.++++.|++|.+|.. ++|+++ ++++ +. ..+... ......+++...+.++.++++. ..+++++
T Consensus 211 -~d~~~~s~~K~~g~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~ 284 (400)
T 3vax_A 211 -IDMISISGHKIGAPK--GVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI---FEAEHAQ 284 (400)
T ss_dssp -CSEEEEETGGGTSCS--SCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHSHHH
T ss_pred -CcEEEEeHHHhCCCC--ceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH---HHhhHHH
Confidence 448999999976644 467777 6651 11 111111 1222445677777777777764 2445788
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCC---ceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~ 317 (352)
.+++++++++++.+.|+ .+++.+..+.. +.++++.+++. +..++.+.|. + ||.+.+|..|..
T Consensus 285 ~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~-~-gi~v~~g~~~~~ 349 (400)
T 3vax_A 285 WQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDV------------DAEAFLVTLK-D-LVAVATGSASTS 349 (400)
T ss_dssp HHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTC------------CHHHHHHHHH-H-HHHHTTTTEEEE
T ss_pred HHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCC------------CHHHHHHHHh-c-CcEEEecccccC
Confidence 89999999999999999 77988876654 34566676643 7888999888 5 899999865432
Q ss_pred -------------------CCeEEEEe-ec--CHHHHHHHHHHHHHHHhh
Q 018665 318 -------------------DTCIRISY-AA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 318 -------------------~~~iRi~~-~~--~~~~l~~~~~~l~~~~~~ 345 (352)
++++||++ +. +++++++++++|++++++
T Consensus 350 ~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 350 ASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred CCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 48999999 75 789999999999998764
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-32 Score=246.60 Aligned_cols=274 Identities=14% Similarity=0.153 Sum_probs=209.0
Q ss_pred CCcEEEeCChHHHHHHHHHHhcC------C-CCEEEecCCCCCChH-HHHHhcCCe------------EEEecccCCCCc
Q 018665 36 PDQILVSNGAKQSILQAVLAVCS------P-GDEVIIPAPFWVSYP-EMARIADAT------------PVILPTRISENF 95 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~------~-~~~vl~~~~~~~~~~-~~~~~~g~~------------v~~i~~~~~~~~ 95 (352)
.+++++++|+++++..++.++.. + +++|++++|+|++.. ..++..|.+ +..++.
T Consensus 97 ~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------ 170 (397)
T 2ord_A 97 GGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF------ 170 (397)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT------
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC------
Confidence 58999999999999999988753 3 478999999987654 477777765 666654
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
.|+++|++++++++++|++++|+||||. +++.+++++|+++|+++ |+++|+||+|+++.+.+. ..++...... .+
T Consensus 171 -~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~-~~~~~~~~~~-~d 246 (397)
T 2ord_A 171 -NNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEY-DALLVFDEVQCGMGRTGK-LFAYQKYGVV-PD 246 (397)
T ss_dssp -TCHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSS-SSHHHHHTCC-CS
T ss_pred -CCHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCccCcc-chhhhhhCCC-CC
Confidence 2899999999889999999999999999 99999999999999999 999999999998766553 2222222211 22
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
+.|+||.++ +|+|+|+++++++++ .+.......+++++++.+.++.++++... + ++..++++++++++.+
T Consensus 247 ---~~s~sK~~~-~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~---~--~~~~~~~~~~~~~l~~ 316 (397)
T 2ord_A 247 ---VLTTAKGLG-GGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELT---K--EGFLEEVEEKGNYLMK 316 (397)
T ss_dssp ---EEEECGGGG-TTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHT---S--TTHHHHHHHHHHHHHH
T ss_pred ---eeeeccccC-CCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHHHHH
Confidence 237899999 899999999988876 55433334556789999999998887521 1 3566777788888888
Q ss_pred HhcccC-Cceec--CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CH
Q 018665 255 SFGELE-GVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SL 329 (352)
Q Consensus 255 ~l~~~~-g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~ 329 (352)
.|++++ ++... .+..|.++++++++.. +..++.+.|.++ ||.+.+++ ++++|++++. ++
T Consensus 317 ~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~l~~~l~~~-gi~v~~~~----~~~iRis~~~~~~~ 380 (397)
T 2ord_A 317 KLQEMKEEYDVVADVRGMGLMIGIQFREEV-----------SNREVATKCFEN-KLLVVPAG----NNTIRFLPPLTVEY 380 (397)
T ss_dssp HHHHHHHHCTTEEEEEEETTEEEEEECTTS-----------CHHHHHHHHHHT-TEECEEET----TTEEEECCCTTCCH
T ss_pred HHHHHHHhCCceEEEEEEeEEEEEEECChH-----------HHHHHHHHHHHC-CCEEccCC----CCEEEEECCcCCCH
Confidence 887641 22211 1234566778886531 578899998875 99999873 6899999764 89
Q ss_pred HHHHHHHHHHHHHHhh
Q 018665 330 TTLQAAVERIKKGLLT 345 (352)
Q Consensus 330 ~~l~~~~~~l~~~~~~ 345 (352)
+++++++++|++++++
T Consensus 381 e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 381 GEIDLAVETLKKVLQG 396 (397)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998864
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-31 Score=236.72 Aligned_cols=286 Identities=13% Similarity=0.093 Sum_probs=218.5
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCC-ChHHHHHhcCCeEEEecccCCCCcccC
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV-SYPEMARIADATPVILPTRISENFLLD 98 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~-~~~~~~~~~g~~v~~i~~~~~~~~~~d 98 (352)
+.+.+.+. ..|.. ++++|++++|+++++..++.++.++ +.+++..+.|. .+...++..|.+++.++.+ .++.+|
T Consensus 46 ~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d 121 (362)
T 3ffr_A 46 KTASDNLKTLLELP-SNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAA--FGKGFY 121 (362)
T ss_dssp HHHHHHHHHHTTCC-TTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCC
T ss_pred HHHHHHHHHHhCCC-CCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecC--CCCCCC
Confidence 44444444 33332 4678999999999999999999877 44555555554 2345778889999999986 445689
Q ss_pred HHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEE
Q 018665 99 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 178 (352)
Q Consensus 99 ~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (352)
+++|+ ++++++++++++|+||||.++| +++|.++|+++||+++|+|++++.... ...+. ..++++
T Consensus 122 ~~~l~--~~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~----~~~~~------~~d~~~ 186 (362)
T 3ffr_A 122 PADIT--VPADAEIICLTHNETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLPYP----KFDWT------KIDSVF 186 (362)
T ss_dssp GGGCC--CCTTCCEEEEESEETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTTSS----CCCTT------SCSEEE
T ss_pred HHHHh--ccCCccEEEEEcCCCCcceeCC---HHHHHHHHHhCCCCEEEEecccccCCc----ccChh------HCcEEE
Confidence 99998 7789999999999999999999 889999999987899999999875321 11111 144889
Q ss_pred eccccccc-cccceeEEEEcChhHHHHHHhhhh---------------------ccccCCChHHHHHHHHHhcccCCChH
Q 018665 179 NGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQS---------------------QFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 179 ~s~sK~~g-~~g~~~g~l~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
.|+||+++ .+| +|++++++++++.+..... ....+++...+.++.++++.. ...
T Consensus 187 ~s~~K~~~~~~G--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~--~~~ 262 (362)
T 3ffr_A 187 FSVQKCFGLPAG--LGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDM--LQI 262 (362)
T ss_dssp EETTSTTCCCSC--CEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHH
T ss_pred EecccccCCCCc--eEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHH--HHc
Confidence 99999997 445 6888899998887765432 114557777777777777531 122
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCC----CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
.++++.++++++++++.+.|+++||+++..+ ..+.++++.+++ +..++.+.|.++ ||.+.+|
T Consensus 263 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~-gi~~~~g 328 (362)
T 3ffr_A 263 SADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM-------------LPGEINKILEPF-DMAVGAG 328 (362)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS-------------CHHHHHHHHGGG-TEEEEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC-------------CHHHHHHHHHHC-CeEEecC
Confidence 3678888999999999999999889888752 245667777764 578899999877 9999998
Q ss_pred CCCCCCCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 313 DAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 313 ~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
..+..++++|++++. ++++++++++.|++++
T Consensus 329 ~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 329 YGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp SGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 766678899999986 8899999999998864
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-30 Score=237.24 Aligned_cols=285 Identities=13% Similarity=0.178 Sum_probs=208.9
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcCC
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADA 82 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g~ 82 (352)
.+...+++ +.++++++ . ++.++++++++++..++.++.++||+|+++.|+|.++...+ +..|.
T Consensus 63 ~~~~~~l~------~~la~~~g-----~--~~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~ 129 (398)
T 2rfv_A 63 NPTTDALE------KKLAVLER-----G--EAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI 129 (398)
T ss_dssp CHHHHHHH------HHHHHHHT-----C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTC
T ss_pred ChHHHHHH------HHHHHHhC-----C--CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCC
Confidence 34445666 88888875 2 36667777889999999999999999999999999988776 78899
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++.+ |++++++.+++++++|++++|+||||.++| +++|+++|+++ |+++|+||+|+.+.+.
T Consensus 130 ~~~~v~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~---- 194 (398)
T 2rfv_A 130 NVRFVDAA-------KPEEIRAAMRPETKVVYIETPANPTLSLVD---IETVAGIAHQQ-GALLVVDNTFMSPYCQ---- 194 (398)
T ss_dssp EEEEECTT-------SHHHHHHHCCTTEEEEEEESSBTTTTBCCC---HHHHHHHHHHT-TCEEEEECTTTCTTTC----
T ss_pred EEEEeCCC-------CHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCcccccC----
Confidence 99999863 899999999989999999999999999999 99999999999 9999999999865432
Q ss_pred cccccCCCCCCceEEEecccccccccccee-EEEEcChhHHH-HHHhhhhcc-ccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~-g~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
.++ . .+.++++.|+||.++.+|.|+ |++++++++++ .+......+ +.+++++.+.++.++++. ...+++
T Consensus 195 ~~~-~----~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~ 266 (398)
T 2rfv_A 195 QPL-Q----LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT---LGIRME 266 (398)
T ss_dssp CGG-G----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT---HHHHHH
T ss_pred Cch-h----hCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhh---HHHHHH
Confidence 111 1 246699999999998789998 99999999887 666555555 567888899988888875 233444
Q ss_pred HHHHHHHHHHHHHHHHhcc--------------cCCceecCC---CCceEEEeecCCccCCcccCCCCCCChHHHHHHHH
Q 018665 240 KMVKAFRERRDFLVKSFGE--------------LEGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 302 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~--------------~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 302 (352)
+. .++.+.+.+.|++ +|++.+..+ ..+.++++++++.. .+...+.+.+.
T Consensus 267 ~~----~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~l~~~~~ 332 (398)
T 2rfv_A 267 RH----CENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL----------EAGRRMINSVE 332 (398)
T ss_dssp HH----HHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH----------HHHHHHHTTCS
T ss_pred HH----HHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH----------HHHHHHHHhCC
Confidence 43 3344444444443 344444433 23445666776310 02333443333
Q ss_pred HccCEEeccCCCCC-----------------------CCCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 303 DKAQVALVPGDAFG-----------------------DDTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 303 ~~~gi~i~~g~~~~-----------------------~~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
. .|+.+.+|+.+. .++.+|+|++. ++++++++.+.|+++
T Consensus 333 ~-~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 333 L-CLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp S-SEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred c-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 2 378888875431 15799999998 667888887777653
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=236.74 Aligned_cols=291 Identities=13% Similarity=0.129 Sum_probs=220.2
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc---CCCCEEEec-CCCCCCh-HHHHHhcCCeEEEecc-cCCC
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC---SPGDEVIIP-APFWVSY-PEMARIADATPVILPT-RISE 93 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~~~~~vl~~-~~~~~~~-~~~~~~~g~~v~~i~~-~~~~ 93 (352)
+.++++++ ..+ +++++|++++|+++++..++.++. ++||+|+++ .+.|... ...++..|.+++.+++ + .
T Consensus 45 ~~l~~~~~~~~~--~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~ 120 (385)
T 2bkw_A 45 KNTRAVFKSAAA--SKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLK--I 120 (385)
T ss_dssp HHHHHHTTCCGG--GTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSS--T
T ss_pred HHHHHHhCCCCC--CCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCC--C
Confidence 78888876 222 346899999999999999999987 889999888 4556555 3677889999999998 5 3
Q ss_pred CcccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-CEEEEecccccccccCCCCccccccCCCC
Q 018665 94 NFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 94 ~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~-~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
++.+|+++|++++++ ++++|++++|+||||.++| +++|.++|++++ |+++|+|++|+.. ..+..+. .
T Consensus 121 ~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~----~~~~~~~----~ 189 (385)
T 2bkw_A 121 GESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIG----CEEFEFD----E 189 (385)
T ss_dssp TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTT----TSCCCTT----T
T ss_pred CCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccC----Ccccccc----c
Confidence 456899999999976 7899999999999999999 889999999873 7999999999742 2112221 1
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHH-HHH----------------------hhhh---ccccCCChHHHHHHH
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA-ACN----------------------KIQS---QFTSGASSISQKAGV 225 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~-~~~----------------------~~~~---~~~~~~~~~~~~~~~ 225 (352)
.+.++++.|+||.++ ++.++|++++++++++ .+. .... .+..+++...+.++.
T Consensus 190 ~~~d~~~~s~~K~~~-~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 268 (385)
T 2bkw_A 190 WGVDFALTASQKAIG-APAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLD 268 (385)
T ss_dssp TTCSEEEEESSSTTC-CCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHH
T ss_pred cCceEEEecCccccc-cCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHH
Confidence 345689999999774 2234699999988776 431 1110 012357777777777
Q ss_pred HHhcccCCChH-HHHHHHHHHHHHHHHHHHHh-cccCCceecCC-----CCceEEEeecCCccCCcccCCCCCCChHHHH
Q 018665 226 AALGLGYAGGE-VVSKMVKAFRERRDFLVKSF-GELEGVKMSEP-----QGAFYLFIDFSTYYGSEAEGFGKIENSESLC 298 (352)
Q Consensus 226 ~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l-~~~~g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
++++. ..+ .+++.+++++++++++.+.| +++ ++.+..+ ..+.++++.++ +..++.
T Consensus 269 ~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 330 (385)
T 2bkw_A 269 VALKE---ILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVA--------------DPPDVI 330 (385)
T ss_dssp HHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECS--------------CHHHHH
T ss_pred HHHHH---HHHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecC--------------CHHHHH
Confidence 77764 122 26778888999999999999 888 8887753 24667788775 356788
Q ss_pred HHHHHccCEEeccCCCCC-CCCeEEEE-ee-----cCHHHHHHHHHHHHHHHhhh
Q 018665 299 RYLLDKAQVALVPGDAFG-DDTCIRIS-YA-----ASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 299 ~~l~~~~gi~i~~g~~~~-~~~~iRi~-~~-----~~~~~l~~~~~~l~~~~~~~ 346 (352)
+.|.++ ||.+.+|..+. .++++|++ ++ .+++++++++++|+++++++
T Consensus 331 ~~l~~~-gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 331 AFLKSH-GVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK 384 (385)
T ss_dssp HHHHHT-TEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred HHHHHC-CeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHhc
Confidence 888764 99999986542 35799999 65 38899999999999998754
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=246.15 Aligned_cols=300 Identities=14% Similarity=0.114 Sum_probs=228.5
Q ss_pred HHHHHHHH-hcCCCCCCCcE--EEeCChHHHHHHHHHHhcCCC--------CEEEecCCCCCChHHHHHhcCCeEEEecc
Q 018665 21 QQFVINLK-ENGLSYTPDQI--LVSNGAKQSILQAVLAVCSPG--------DEVIIPAPFWVSYPEMARIADATPVILPT 89 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i--~~~~g~~~a~~~~~~~l~~~~--------~~vl~~~~~~~~~~~~~~~~g~~v~~i~~ 89 (352)
+.+++++. ..|.+..++++ ++++|+++++..++.++.+++ |+|+++.++|.++...++..|.+++.+++
T Consensus 142 ~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~ 221 (514)
T 3mad_A 142 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPL 221 (514)
T ss_dssp HHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECB
T ss_pred HHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCeeEEeee
Confidence 77777777 66665555788 999999999999999987655 89999999999999999999999999998
Q ss_pred cCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc-----CCCCccc
Q 018665 90 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-----APATHTS 164 (352)
Q Consensus 90 ~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~-----~~~~~~~ 164 (352)
+. ++.+|+++|++++++++++|++++|+||+|.+.| +++|.++|+++ |+++|+|++|+++.+ .|.....
T Consensus 222 ~~--~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~-~i~livDea~~~~~~~~~~~~g~~~~~ 295 (514)
T 3mad_A 222 DA--DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEH-GIGCHVDACLGGFILPWAERLGYPVPP 295 (514)
T ss_dssp CT--TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCC---HHHHHHHHHHH-TCEEEEECTTTTTTHHHHHHTTCCCCC
T ss_pred CC--CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccC---HHHHHHHHHHh-CCeEEEecccccccchhHHhcCCCCCc
Confidence 74 5679999999999999999999999999999999 89999999999 999999999987643 1211112
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhh-----------ccccCCChHHHHHHHHHhcccCC
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS-----------QFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
+.. ...+.++++.|++|.++ ++.++|+++++++.+........ ....+.+.....++.+++.. +
T Consensus 296 ~~~--~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~--l 370 (514)
T 3mad_A 296 FDF--RLEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLS--L 370 (514)
T ss_dssp CST--TSTTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHH--H
T ss_pred ccc--cCCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHH--H
Confidence 211 11345688999999975 77889999988766544221100 00112333333333343332 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
...+++++.++..++++++.+.|++++++.++.+..+ ++++..++. +..++.+.|.++ ||.+ ++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~------------~~~~l~~~L~~~-Gi~v-~g~ 435 (514)
T 3mad_A 371 GEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL------------NIYQVMEEMAGR-GWRL-NGL 435 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS------------CHHHHHHHHHTT-TCBC-EEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC------------CHHHHHHHHHhc-CCEe-ccC
Confidence 2566788899999999999999999889988866655 466665432 788999999876 8887 443
Q ss_pred CCCCCCeEEEEeec---CHHHHHHHHHHHHHHHhhhCC
Q 018665 314 AFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 314 ~~~~~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~~~ 348 (352)
. .++++|+++.. ++++++++++.|+++++++..
T Consensus 436 ~--~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 436 H--RPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp T--TTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred C--CCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3 36789999984 569999999999999987653
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=245.28 Aligned_cols=309 Identities=13% Similarity=0.087 Sum_probs=233.6
Q ss_pred CCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC-----CC---CEEEecCCCCCChHH
Q 018665 5 RVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS-----PG---DEVIIPAPFWVSYPE 75 (352)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-----~~---~~vl~~~~~~~~~~~ 75 (352)
...++..+++ +.+++++. ..|.+..++++++++|+++++..++.++.+ +| ++|+++.++|.++..
T Consensus 100 ~~~~~~~~l~------~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~ 173 (497)
T 3mc6_A 100 DVFPAVRKME------SEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDK 173 (497)
T ss_dssp TTCHHHHHHH------HHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHH
T ss_pred ccChHHHHHH------HHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHH
Confidence 3445556677 78888877 667665678999999999999999998854 44 799999999999999
Q ss_pred HHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 76 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 76 ~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
.++..|.+++.++++. .++.+|+++|++++++++++|++++|+||+|.+.| +++|.++|+++ |+++|+|++|+++
T Consensus 174 ~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~---l~~i~~la~~~-g~~livD~a~~~~ 248 (497)
T 3mc6_A 174 AAYYFGMKLRHVELDP-TTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADD---IEGLGKIAQKY-KLPLHVDSCLGSF 248 (497)
T ss_dssp HHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCS---CTTTTTHHHHT-TCCEEEETTTTHH
T ss_pred HHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCC---HHHHHHHHHHh-CCEEEEECcchhh
Confidence 9999999999999874 35679999999999999999999999999999999 88999999999 9999999999865
Q ss_pred ccC-----CCCcc-ccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh-hccc----------cCCC-
Q 018665 156 IYA-----PATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-SQFT----------SGAS- 217 (352)
Q Consensus 156 ~~~-----~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-~~~~----------~~~~- 217 (352)
... +.... .+. . ...+.++++.|++|.++ ++.++|+++++++.+....... ..+. .+.+
T Consensus 249 ~~~f~~~~~~~~~~~~~-~-~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 325 (497)
T 3mc6_A 249 IVSFMEKAGYKNLPLLD-F-RVPGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPG 325 (497)
T ss_dssp HHGGGTTTTCCSCCCCS-T-TSTTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBH
T ss_pred hhhhhhhhcccCCcccc-c-cCCCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcc
Confidence 321 11111 111 1 11345688999999975 7788999998877655432111 1110 0111
Q ss_pred --hHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcc-cCCceecCCCCceEEEeecCCccCCcccCCCCCCCh
Q 018665 218 --SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 294 (352)
Q Consensus 218 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 294 (352)
..++.++...+. ..++++..++..++++++.+.|++ ++|+.++.+..+.++++..++. +.
T Consensus 326 ~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~~------------~~ 388 (497)
T 3mc6_A 326 AIVVGCWATMVNMG-----ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTL------------NI 388 (497)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTTT------------TH
T ss_pred hhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCCC------------CH
Confidence 222333444443 466788888999999999999999 6899887555444455555432 78
Q ss_pred HHHHHHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHhhhCC
Q 018665 295 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 295 ~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.++.+.|.++ ||.+.++. .+..+|+++.. ++++++++++.|+++++++..
T Consensus 389 ~~l~~~L~~~-Gi~v~~~~---~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 389 HELSDRLSKK-GWHFNALQ---KPVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp HHHHHHHHTT-TCBCEECC---SSCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhC-CEEEecCC---CCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8999999876 89887653 34578999987 889999999999999988765
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-30 Score=239.26 Aligned_cols=324 Identities=13% Similarity=0.098 Sum_probs=206.1
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc--------CCCCEEEecCCCCCChH
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC--------SPGDEVIIPAPFWVSYP 74 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~~~~vl~~~~~~~~~~ 74 (352)
|.+..+..+.+ +.+++++. ..+ ...++|++++|+++++..+++++. .+++.|++.+|+|+++.
T Consensus 64 ~~~~~~~~~~~------~~l~~~la~~~~--~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~ 135 (430)
T 3i4j_A 64 VHGSQFSSDVL------EEYAGRLARFVG--LPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGAS 135 (430)
T ss_dssp CCTTTCEEHHH------HHHHHHHHHHTT--CTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-----
T ss_pred ccccccCCHHH------HHHHHHHHHhCC--CCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCC
Confidence 43344555566 66666666 444 456799999999999999999875 34689999999999877
Q ss_pred HHHHhcCC---------------eEEEecccCCC-CcccCHHHHHhhcc----CCeeEEEEcCCCC-Cccc-CCCHHHHH
Q 018665 75 EMARIADA---------------TPVILPTRISE-NFLLDPKVLESKLT----EKSRLLILCSPSN-PTGS-VYPKNLLD 132 (352)
Q Consensus 75 ~~~~~~g~---------------~v~~i~~~~~~-~~~~d~~~l~~~l~----~~~~~i~i~~p~n-ptG~-~~~~~~l~ 132 (352)
..+...+. ++..++.+... ....|++.|+++++ +++++++++.++| ++|. .++.++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~ 215 (430)
T 3i4j_A 136 LGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYE 215 (430)
T ss_dssp --------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHH
T ss_pred cccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHH
Confidence 54443322 23333332110 01235688888886 4455555555577 8886 56788899
Q ss_pred HHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh---
Q 018665 133 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI--- 208 (352)
Q Consensus 133 ~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~--- 208 (352)
+|.++|+++ |+++|+||+|.++.+.+.. .+....+...++ +.++||.++ +| +|+||+++++++++.+...
T Consensus 216 ~l~~l~~~~-~~~li~DEv~~~~~~~g~~-~~~~~~~~~~~d---i~t~sK~l~-~G~~r~G~~~~~~~i~~~~~~~~~~ 289 (430)
T 3i4j_A 216 RVRDICDEA-GIIFIADEVMSGMGRCGSP-LALSRWSGVTPD---IAVLGKGLA-AGYAPLAGLLAAPQVYETVMGGSGA 289 (430)
T ss_dssp HHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGTTTCCCS---EEEECGGGT-TTSSCCEEEEECHHHHHHHHHTTCB
T ss_pred HHHHHHHHc-CCEEEEechhhCCCcccch-hhhhhhcCCCCc---EEEEccccc-CCccccEEEEECHHHHHHHhccCCc
Confidence 999999999 9999999999988766542 222222011122 446899998 69 9999999999999998863
Q ss_pred -hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccC
Q 018665 209 -QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 287 (352)
Q Consensus 209 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (352)
....+++.|++.+.++.++++.... ++..++.++..+..++.+.+.+++++++..+.+.+ .++++.+++......
T Consensus 290 ~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~-- 365 (430)
T 3i4j_A 290 FMHGFTYAGHPVSVAAGLSVLDIVER-EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTG-LLLGVVLGDLATGQA-- 365 (430)
T ss_dssp CCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEET-TEEEEEEC---------
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEE-EEEEEEeccccccCC--
Confidence 3445678999999999999874211 23344444445555555555554556666665554 456677653210000
Q ss_pred CCCCCChHHHHHHHHHccCEEeccCCCCC---CCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 288 FGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 288 ~~~~~~~~~~~~~l~~~~gi~i~~g~~~~---~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+.+.....++.+.|+++ ||.+.|+..+. .++++||+++. +++++++++++|+++++++
T Consensus 366 ~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 366 FETPGIASRIGAAALKR-GLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp -----CHHHHHHHHHHT-TEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhC-CCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 00001346788988866 99999873221 25789999984 8999999999999999865
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=238.51 Aligned_cols=286 Identities=11% Similarity=0.133 Sum_probs=217.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CEEEecCCCCCChHHHHHhcCC----------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA---------- 82 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~~-~~vl~~~~~~~~~~~~~~~~g~---------- 82 (352)
+.+++++ ..+++++++|+++++..++.++.. ++ ++|++++|+|+++...+...+.
T Consensus 88 ~~la~~~-------~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T 4adb_A 88 KKLIDAT-------FADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAP 160 (406)
T ss_dssp HHHHHHS-------SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCS
T ss_pred HHHHhhC-------CCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCC
Confidence 5565554 356999999999999999998754 44 8999999999998755554443
Q ss_pred ---eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCEEEEeccccccccc
Q 018665 83 ---TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 157 (352)
Q Consensus 83 ---~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~--~~~~l~~l~~~~~~~~~~~livD~~~~~~~~ 157 (352)
++..++. .|+++|++++++++++|+++ |+||+|.++ +.+++++|+++|+++ |+++|+||+|+++.+
T Consensus 161 ~~~~~~~~~~-------~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~ 231 (406)
T 4adb_A 161 LPADIRHAAY-------NDINSASALIDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRH-NALLIFDEVQTGVGR 231 (406)
T ss_dssp CCSSEEEECT-------TCHHHHHTTCSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTT
T ss_pred CCCCceEeCC-------CcHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCc
Confidence 3333332 38999999999899998888 999999887 899999999999999 999999999998766
Q ss_pred CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHH
Q 018665 158 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
.+... ....... ..+ +.|+||.++ +|+|+||+++++++++.+.......+++++++.+.++.++++... .
T Consensus 232 ~g~~~-~~~~~~~-~~d---~~t~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~- 301 (406)
T 4adb_A 232 TGELY-AYMHYGV-TPD---LLTTAKALG-GGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELIN---T- 301 (406)
T ss_dssp TSSSS-HHHHHTC-CCS---EEEECGGGG-TTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS---S-
T ss_pred cchhH-HHHhcCC-CCC---EEEechhhc-CCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH---h-
Confidence 65422 1111111 122 226799999 999999999999999888766666677899999999999887521 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccc----CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 238 VSKMVKAFRERRDFLVKSFGEL----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
++..++++++++++.+.|+++ +.+.. .+..|.++++.+++... .+..++.+.|.++ ||.+.+++
T Consensus 302 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~---------~~~~~~~~~l~~~-gi~v~~~~ 369 (406)
T 4adb_A 302 -PEMLNGVKQRHDWFVERLNTINHRYGLFSE-VRGLGLLIGCVLNADYA---------GQAKQISQEAAKA-GVMVLIAG 369 (406)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCCEEE-EEEETTEEEEEECTTTT---------TCHHHHHHHHHHT-TEECEESS
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHhCCCceE-EEEEEEEEEEEEeCCcH---------HHHHHHHHHHHHC-CcEEeecC
Confidence 466677777888888877764 11211 12346668888765310 1578899999877 99999864
Q ss_pred CCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 314 AFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 314 ~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
++++|++++. +++++++++++|+++++++..
T Consensus 370 ----~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 370 ----GNVVRFAPALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp ----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ----CCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 7899997655 899999999999999988765
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=241.48 Aligned_cols=306 Identities=13% Similarity=0.096 Sum_probs=208.6
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHhc------------CCeEE
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA------------DATPV 85 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~~------------g~~v~ 85 (352)
..+++.+. ..+ .+.++|++++|+++++..+++.+. ..+++|++.+|.|++........ ...+.
T Consensus 88 ~~l~~~la~~~~--~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (433)
T 1zod_A 88 VDLATRLANITP--PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSF 165 (433)
T ss_dssp HHHHHHHHHHSC--TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEE
T ss_pred HHHHHHHHHhCC--CCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCce
Confidence 44555554 333 357899999999999999998653 34579999999998766543321 11344
Q ss_pred EecccCC--CCc--------ccCHHHHHhhcc----CCeeEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecc
Q 018665 86 ILPTRIS--ENF--------LLDPKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDE 150 (352)
Q Consensus 86 ~i~~~~~--~~~--------~~d~~~l~~~l~----~~~~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~ 150 (352)
.++++.. .++ .+|++.|+++++ +++++++++..+||+|. .++.+++++|.++|+++ |+++|+||
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DE 244 (433)
T 1zod_A 166 AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR-GMLLILDE 244 (433)
T ss_dssp EECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH-TCEEEEEC
T ss_pred EecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh-CCEEEEec
Confidence 4444321 111 246899999886 35555555444688995 57788999999999999 99999999
Q ss_pred cccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhc--cccCCChHHHHHHHHHh
Q 018665 151 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAAL 228 (352)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 228 (352)
+|+++.+.+.. ..+..... ..+ +.|+||.+| +|+|+||+++++++++.+...... .+++.|++.+.++.+++
T Consensus 245 v~~~~g~~g~~-~~~~~~~~-~~d---i~s~sK~~~-~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal 318 (433)
T 1zod_A 245 AQTGVGRTGTM-FACQRDGV-TPD---ILTLSKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVL 318 (433)
T ss_dssp TTTTTTTTSSS-STHHHHTC-CCS---EEEECHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHH
T ss_pred cccCCCcCchH-hHHhhcCC-CCC---EEEeccccc-CCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHH
Confidence 99987655431 11111111 112 458999999 599999999999999888763222 56678999999888888
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHhccc----CCceecCCCCceEEEeecCCccCC-cccCCCCCCChHHHHHHHHH
Q 018665 229 GLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 303 (352)
+.. .+ +...++++++++++.+.|+++ +.+....+ .|.++++++++.... .+.. ....++.+.|.+
T Consensus 319 ~~~---~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~----~~~~~~~~~l~~ 388 (433)
T 1zod_A 319 DVV---QR--DGLVARANVMGDRLRRGLLDLMERFDCIGDVRG-RGLLLGVEIVKDRRTKEPAD----GLGAKITRECMN 388 (433)
T ss_dssp HHH---HH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETTEEEEEEEEETTTTEECT----THHHHHHHHHHH
T ss_pred HHH---Hh--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-EEEEEEEEEecCccccCCCh----HHHHHHHHHHHH
Confidence 641 11 234556666666676666553 44444443 355677887642100 0000 136788888886
Q ss_pred ccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 304 KAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 304 ~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+ ||.+.||..++.++++||+++. +++++++++++|+++++++
T Consensus 389 ~-Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 389 L-GLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp T-TEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred C-CCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 5 9999998766555899998764 8999999999999998764
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=239.10 Aligned_cols=288 Identities=10% Similarity=0.125 Sum_probs=211.1
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CEEEecCCCCCChHH-HHHhcCCe-------
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS-------PG-DEVIIPAPFWVSYPE-MARIADAT------- 83 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~~-~~vl~~~~~~~~~~~-~~~~~g~~------- 83 (352)
+.+++.+. .. ..+++++++|+++|++.+++++.. ++ ++|++++|+|+++.. .+...|.+
T Consensus 102 ~~l~~~la~~~----g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~ 177 (420)
T 2pb2_A 102 LRLGRKLIDAT----FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFG 177 (420)
T ss_dssp HHHHHHHHHHS----SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSS
T ss_pred HHHHHHHHhhC----CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCC
Confidence 55555554 22 258999999999999999998764 55 589999999987654 44445543
Q ss_pred -----EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEeccccccccc
Q 018665 84 -----PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 157 (352)
Q Consensus 84 -----v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG-~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~ 157 (352)
+..++. .|+++|++++++++++|++++++|++| .+++.+++++|.++|+++ |+++|+||+|.++.+
T Consensus 178 p~~~~~~~~~~-------~d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~-gi~lI~Dev~~g~~~ 249 (420)
T 2pb2_A 178 PKPADIIHVPF-------NDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEH-QALLVFDEVQCGMGR 249 (420)
T ss_dssp SCCSCEEEECT-------TCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTT
T ss_pred CCCCCeEEecC-------CCHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHc-CCEEEEEcCCcCccc
Confidence 444442 289999999988999999888888888 468999999999999999 999999999988766
Q ss_pred CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHH
Q 018665 158 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
.|... .+..... .++ + .|+||.+| +|+|+|++++++++++.+.......++++|++.+.++.++++... +
T Consensus 250 ~g~~~-~~~~~~~-~~d-i--it~sK~l~-~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~---~- 319 (420)
T 2pb2_A 250 TGDLF-AYMHYGV-TPD-I--LTSAKALG-GGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIIN---T- 319 (420)
T ss_dssp TSSSS-HHHHHTC-CCS-E--EEECGGGG-TTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHS---S-
T ss_pred CCcHH-HHHhcCC-CCC-e--EEeccccc-CCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH---h-
Confidence 55421 1111111 122 2 27899999 899999999999887766543344556789999999988887521 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccc----CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 238 VSKMVKAFRERRDFLVKSFGEL----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
+++.++++++++++.+.|+++ +.+....+ .|.+++++++.... .+..++.+.|.++ ||.+.+++
T Consensus 320 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~---------~~~~~l~~~l~~~-Gi~v~~~~ 387 (420)
T 2pb2_A 320 -PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG-MGLLIGAELKPKYK---------GRARDFLYAGAEA-GVMVLNAG 387 (420)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE-ETTEEEEEECGGGT---------TCHHHHHHHHHHT-TEECEESS
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cceEEEEEECCCch---------HHHHHHHHHHHHC-CCEEEeCC
Confidence 355667777777887777654 33333343 35667788764210 1477899998875 99999874
Q ss_pred CCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 314 AFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 314 ~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
++++|++++. +++++++++++|+++++++
T Consensus 388 ----~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 388 ----ADVMRFAPSLVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp ----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6899999764 9999999999999998764
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=241.26 Aligned_cols=310 Identities=12% Similarity=0.117 Sum_probs=219.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCC-CChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFW-VSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~-~~~~~~~~~~g 81 (352)
.|.+.++..+++ ++++++++ .+++++++|+++++..++.+++++|| +++.|+| ..+...++..|
T Consensus 70 ~y~~~~~~~~l~------~~la~~~~-------~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~G 134 (456)
T 2ez2_A 70 AYAGSENFYHLE------RTVQELFG-------FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKNG 134 (456)
T ss_dssp CSSSCHHHHHHH------HHHHHHHC-------CSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHTT
T ss_pred hcccChhHHHHH------HHHHHHhC-------CCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHHcC
Confidence 477777888899 99999984 45899999999999999999999998 7888999 66688999999
Q ss_pred CeEEEecccCC----C----CcccCHHHHHhhccCCe----eEEEEcCCCC-CcccCCCHHHHHHHHHHHHhCCCEEEEe
Q 018665 82 ATPVILPTRIS----E----NFLLDPKVLESKLTEKS----RLLILCSPSN-PTGSVYPKNLLDEIARIVAKHPRLLVLS 148 (352)
Q Consensus 82 ~~v~~i~~~~~----~----~~~~d~~~l~~~l~~~~----~~i~i~~p~n-ptG~~~~~~~l~~l~~~~~~~~~~~liv 148 (352)
.+++.++++.+ . ++.+|+++|++++++++ ++|++++|+| |||.+++.+++++|+++|+++ |+++|+
T Consensus 135 ~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~-~i~li~ 213 (456)
T 2ez2_A 135 AVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAH-GIKVFY 213 (456)
T ss_dssp CEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHT-TCCEEE
T ss_pred CEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHc-CCeEEE
Confidence 99999998732 1 35789999999997544 8899999988 999999999999999999999 999999
Q ss_pred cccccc----------cccCCCCccccc-cCCCCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhcc----
Q 018665 149 DEIYEH----------IIYAPATHTSFA-SLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF---- 212 (352)
Q Consensus 149 D~~~~~----------~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~---- 212 (352)
||+|+. +.+.+....++. .... ..+++ +.|++|..+ +| +.||+++ ++++++.+.......
T Consensus 214 De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~~-~~S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~ 289 (456)
T 2ez2_A 214 DATRCVENAYFIKEQEQGFENKSIAEIVHEMFS-YADGC-TMSGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEGMP 289 (456)
T ss_dssp ECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHT-TCSEE-EEETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTCCT
T ss_pred EccccccccccccccccccCCcchhhhhhhhcc-cCCEE-EEeCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccCcc
Confidence 999986 334442111110 0011 12334 447888765 56 6899998 688888776543221
Q ss_pred -ccCCChHHHHH-HHHHhcccCCChHHH-HHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCC---ccCCccc
Q 018665 213 -TSGASSISQKA-GVAALGLGYAGGEVV-SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST---YYGSEAE 286 (352)
Q Consensus 213 -~~~~~~~~~~~-~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~---~~~~~~~ 286 (352)
..+.+.....+ +.+.++ .+ ++..++.+++.+++.+.|++. |+.+..+.+++++|+.++. ..+ ..
T Consensus 290 ~~~~~~~~~~~a~a~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~~~~~~~~~~~~~~~--~~ 359 (456)
T 2ez2_A 290 SYGGLAGRDMEAMAIGLRE-------AMQYEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFCEHLT--QD 359 (456)
T ss_dssp TTTTCCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHTTTSC--GG
T ss_pred cccCcchhHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEhHHhcCCCC--hh
Confidence 12234333333 222222 12 334445555667777888775 7877778888889988642 110 00
Q ss_pred CCCCCCC-hHHHHHHHHHccCEEecc-CCCC------------CCCCeEEEEee---cCHHHHHHHHHHHHHHHhhhC
Q 018665 287 GFGKIEN-SESLCRYLLDKAQVALVP-GDAF------------GDDTCIRISYA---ASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 287 ~~~~~~~-~~~~~~~l~~~~gi~i~~-g~~~------------~~~~~iRi~~~---~~~~~l~~~~~~l~~~~~~~~ 347 (352)
.- ...+.+.|+++.||.+.+ |..| ...+++|++++ .+++++++++++|++++++..
T Consensus 360 -----~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 360 -----EFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp -----GCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred -----hccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 01 334477775455998765 3322 12378999999 589999999999999997654
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=233.74 Aligned_cols=278 Identities=13% Similarity=0.107 Sum_probs=205.3
Q ss_pred CCcEEEeCChHHHHHHHHHHhc-------CCCCEEEecCCCCCChHHHHHhcC-------------CeEEEecccCCCCc
Q 018665 36 PDQILVSNGAKQSILQAVLAVC-------SPGDEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRISENF 95 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~-------~~~~~vl~~~~~~~~~~~~~~~~g-------------~~v~~i~~~~~~~~ 95 (352)
.+++++++|+++++..+++.+. .++++|++++|+|+++.......+ .++..++.
T Consensus 93 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 166 (395)
T 3nx3_A 93 LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY------ 166 (395)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT------
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC------
Confidence 6899999999999999998764 346899999999988764444332 34444442
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
.|+++|+++++++++++++++++|++|.. ++.+++++|.++|+++ |+++|+||+|.++...+.. ...... +.
T Consensus 167 -~d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~~~g~~g~~-~~~~~~----~~ 239 (395)
T 3nx3_A 167 -NDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEK-DILLIADEIQCGMGRSGKF-FAYEHA----QI 239 (395)
T ss_dssp -TCHHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGG----TC
T ss_pred -CCHHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCCcCCcc-hhHHhc----CC
Confidence 27999999999889998888887777766 6788899999999999 9999999999987655431 111111 11
Q ss_pred eEEEeccccccccccceeEEEEcChhH-HHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
...+.|+||.++ +|+|+|++++++++ ++.+.......+++.+++.+.++.++++.... ++..++..+..+..++.+.
T Consensus 240 ~~d~~t~sK~~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~ 317 (395)
T 3nx3_A 240 LPDIMTSAKALG-CGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-EKILENVNKLTPYLEQSLD 317 (395)
T ss_dssp CCSEEEECGGGT-TTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccccc-CCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH
Confidence 123567899998 68999999999998 88776654556678899999999998874211 2334444444444455555
Q ss_pred HHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHH
Q 018665 254 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTT 331 (352)
Q Consensus 254 ~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~ 331 (352)
+.+.+++.+.... ..|.++++.+++.. +..++.+.|.++ ||.+.+++ ++++|++++. ++++
T Consensus 318 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~-----------~~~~~~~~l~~~-Gi~v~~~~----~~~iRi~~~~~~t~e~ 380 (395)
T 3nx3_A 318 ELINEFDFCKKRK-GLGFMQGLSLDKSV-----------KVAKVIQKCQEN-ALLLISCG----ENDLRFLPPLILQKEH 380 (395)
T ss_dssp HHHHHCTTEEEEE-EETTEEEEEECTTS-----------CHHHHHHHHHHT-TEECEEET----TTEEEECCCTTCCHHH
T ss_pred HHHHhCCCeEEEE-eEEEEEEEEeCCcc-----------hHHHHHHHHHHC-CCEEecCC----CCEEEEECCCCCCHHH
Confidence 5444455444443 34556788877531 678899998876 99999864 7899998766 8999
Q ss_pred HHHHHHHHHHHHhh
Q 018665 332 LQAAVERIKKGLLT 345 (352)
Q Consensus 332 l~~~~~~l~~~~~~ 345 (352)
+++++++|++++++
T Consensus 381 i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 381 IDEMSEKLRKALKS 394 (395)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=236.22 Aligned_cols=292 Identities=12% Similarity=0.077 Sum_probs=210.7
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc---C----CCCEEEecCCCCCChHHHHHh-cC-----------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC---S----PGDEVIIPAPFWVSYPEMARI-AD----------- 81 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~----~~~~vl~~~~~~~~~~~~~~~-~g----------- 81 (352)
+.++++++ .++++|++++|++++++.+++++. + ++++|++++|.|+++...... .+
T Consensus 93 ~~la~~~~-----~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~ 167 (429)
T 1s0a_A 93 RKLVAMTP-----QPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKG 167 (429)
T ss_dssp HHHHHHSC-----TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTT
T ss_pred HHHHHhCC-----CCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccC
Confidence 55555543 467899999999999999988653 2 578999999999886543322 11
Q ss_pred --CeEEEecccCC---CCc-ccCHHHHHhhcc---CCeeEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCEEEEecc
Q 018665 82 --ATPVILPTRIS---ENF-LLDPKVLESKLT---EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDE 150 (352)
Q Consensus 82 --~~v~~i~~~~~---~~~-~~d~~~l~~~l~---~~~~~i~i~~p-~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~ 150 (352)
..+..++++.. ..+ .+|+++|+++++ +++++++++.+ +||||. ..+.+++++|+++|+++ |+++|+||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~-~~~li~De 246 (429)
T 1s0a_A 168 YLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE-GILLIADE 246 (429)
T ss_dssp TSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH-TCEEEEEC
T ss_pred CCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEee
Confidence 13455555421 123 478999999886 45666665555 689995 56788899999999999 99999999
Q ss_pred cccccccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhhh-----hccccCCChHHHHHH
Q 018665 151 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAG 224 (352)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 224 (352)
+|.++.+.+.. ..+..... ..+ +.|+||.++ +| +|+||+++++++++.+.... ...++++|++.+.++
T Consensus 247 ~~~~~g~~g~~-~~~~~~~~-~~d---~~t~sK~l~-~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~ 320 (429)
T 1s0a_A 247 IATGFGRTGKL-FACEHAEI-APD---ILCLGKALT-GGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAA 320 (429)
T ss_dssp TTTTTTTTSSS-SGGGGGTC-CCS---EEEECGGGG-TSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHH
T ss_pred hhhCCcccchH-HHhhhcCC-CCC---EEEeccccc-CCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHH
Confidence 99987654431 12211111 122 347899998 78 99999999999988886531 234567899999999
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHH
Q 018665 225 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 301 (352)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 301 (352)
.++++.. .+ ++..++++++++++.+.|+++ +++....+. |.++++++++.. +..++.+.|
T Consensus 321 ~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~~~~~~~~~~~-----------~~~~l~~~l 383 (429)
T 1s0a_A 321 NASLAIL---ES--GDWQQQVADIEVQLREQLAPARDAEMVADVRVL-GAIGVVETTHPV-----------NMAALQKFF 383 (429)
T ss_dssp HHHHHHH---HT--CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEE-TTEEEEEESSCB-----------CHHHHHHHH
T ss_pred HHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEe-eEEEEEEECCcc-----------cHHHHHHHH
Confidence 8888741 11 245566777888888888765 455544444 456888887532 678899998
Q ss_pred HHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 302 LDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 302 ~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
.++ ||.+.+. .+++||+++. +++++++++++|++++++++
T Consensus 384 ~~~-Gi~v~~~-----~~~iRis~~~~~t~e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 384 VEQ-GVWIRPF-----GKLIYLMPPYIILPQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp HHT-TEECCCB-----TTEEEECCCTTCCHHHHHHHHHHHHHHTSSGG
T ss_pred HHC-CCEEecc-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 865 9999874 3799999764 99999999999999987654
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=231.32 Aligned_cols=298 Identities=14% Similarity=0.183 Sum_probs=224.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++..+..+++ +.++++++ .+++++++|+++++..++.++ +++||+|+++.|+|.++...++..|
T Consensus 58 ~y~~~~~~~~l~------~~la~~~~-------~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g 124 (399)
T 2oga_A 58 RYLLGPELEGFE------AEFAAYCE-------TDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATG 124 (399)
T ss_dssp CCSSSHHHHHHH------HHHHHHTT-------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTT
T ss_pred CCCCchhHHHHH------HHHHHHHC-------CCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHCC
Confidence 466667778888 99999985 236788888899999999999 8899999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc-cCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPA 160 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~-~~~~ 160 (352)
.+++.+++++ +++.+|+++|++++++++++|+ ++||+|...+ +++|.++|+++ |+++|+|++|+.+. +++.
T Consensus 125 ~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~ 196 (399)
T 2oga_A 125 ATPVPVEPHE-DHPTLDPLLVEKAITPRTRALL---PVHLYGHPAD---MDALRELADRH-GLHIVEDAAQAHGARYRGR 196 (399)
T ss_dssp CEEEEECBCS-SSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHH-TCEECEECTTCTTCEETTE
T ss_pred CEEEEEecCC-CCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccC---HHHHHHHHHHc-CCEEEEECcccccCccCCe
Confidence 9999999874 3467899999999988888776 5789999999 99999999999 99999999998642 2221
Q ss_pred CccccccCCCCCCceEEEecc--ccccccccceeEEEEcC-hhHHHHHHhhhhc------------cccCCChHHHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQ------------FTSGASSISQKAGV 225 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~--sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 225 (352)
.+... .++++.|+ +|.+|.+| +.|+++++ +++++.+...... ++..++.+.+.++.
T Consensus 197 ---~~~~~-----~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~ 267 (399)
T 2oga_A 197 ---RIGAG-----SSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLR 267 (399)
T ss_dssp ---ETTCT-----TCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHH
T ss_pred ---ecccc-----cCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHH
Confidence 11111 24888888 79998668 89999886 7888877654322 11245666666666
Q ss_pred HHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC-CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 226 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
+.++. +++..++.+++.+++.+.|++++++.+.. +..+.++|+.++-.. .+..++.+.|.++
T Consensus 268 ~~l~~-------~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~L~~~ 330 (399)
T 2oga_A 268 IRLAH-------LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT----------ERRDELRSHLDAR 330 (399)
T ss_dssp HHHHT-------HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEEC----------SSHHHHHHHHHHT
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEEC----------CCHHHHHHHHHHC
Confidence 66643 34455666777888999999888877643 444444443332110 1678899998875
Q ss_pred cCEEeccCCCC-----------C-----C-------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 305 AQVALVPGDAF-----------G-----D-------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 305 ~gi~i~~g~~~-----------~-----~-------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
||.+.++... + . .+++||+++. +++|++++++.|++++++++.
T Consensus 331 -gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~~ 398 (399)
T 2oga_A 331 -GIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERVDQ 398 (399)
T ss_dssp -TBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred -CCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999875311 0 0 1579999986 899999999999999987643
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=237.57 Aligned_cols=287 Identities=14% Similarity=0.117 Sum_probs=208.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChH-HHHHhcCCeEEE---ecccCCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYP-EMARIADATPVI---LPTRISEN 94 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~-~~~~~~g~~v~~---i~~~~~~~ 94 (352)
+.++++++ .++++|++++|+++++..++.++. .++++|++++|+|++.. ..++..|.++.. .|+..+..
T Consensus 94 ~~la~~~~-----~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~ 168 (395)
T 1vef_A 94 RTLTAILP-----PELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVE 168 (395)
T ss_dssp HHHHHTSC-----TTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEE
T ss_pred HHHHHhcC-----CCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCee
Confidence 55555542 467899999999999999998763 56789999999987644 466666765211 12111000
Q ss_pred --cccCHHHHHhhccCCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc-cccccCCC
Q 018665 95 --FLLDPKVLESKLTEKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPG 170 (352)
Q Consensus 95 --~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~-~~~~~~~~ 170 (352)
...|+++|++++++++++|+++.++||||... +.+++++|.++|+++ |+++|+||+|+++.+.+... .......
T Consensus 169 ~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~-~~~li~Dea~~~~~~~g~~~~~~~~~~~- 246 (395)
T 1vef_A 169 FIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEK-GALLILDEIQTGMGRTGKRFAFEHFGIV- 246 (395)
T ss_dssp EECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCC-
T ss_pred EeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEecccCCccCCchhHhhhcCCC-
Confidence 01489999999988888888777788999765 688899999999999 99999999999765444321 1111111
Q ss_pred CCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHH
Q 018665 171 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 250 (352)
Q Consensus 171 ~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
.+ + .|+||.++ +|+|+|++++++++++.+.......+++++++.+.++.++++. ... ++..++++++++
T Consensus 247 --~d-~--~s~sK~~~-~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~----~~~-~~~~~~~~~~~~ 315 (395)
T 1vef_A 247 --PD-I--LTLAKALG-GGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRY----LER-TRLWERAAELGP 315 (395)
T ss_dssp --CS-E--EEECGGGG-TTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHH----HHH-HTTHHHHHHHHH
T ss_pred --CC-E--EEEccccc-CCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHH----HHh-CCHHHHHHHHHH
Confidence 22 2 28899999 5899999999998877665533344567888899888888874 222 456778888889
Q ss_pred HHHHHhcccCCceec--CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec-
Q 018665 251 FLVKSFGELEGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA- 327 (352)
Q Consensus 251 ~l~~~l~~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~- 327 (352)
++.+.|++++. .+. .+..|.++++++++ +..++.+.|.++.||.+.++ .++++|++++.
T Consensus 316 ~l~~~l~~~~~-~~~~~~~~~g~~~~~~~~~-------------~~~~l~~~l~~~~gi~v~~~----~~~~iRi~~~~~ 377 (395)
T 1vef_A 316 WFMEKLRAIPS-PKIREVRGMGLMVGLELKE-------------KAAPYIARLEKEHRVLALQA----GPTVIRFLPPLV 377 (395)
T ss_dssp HHHHHHHTSCC-TTEEEEEEETTEEEEEESS-------------CSHHHHHHHHHHHCEECEES----STTEEEECCCTT
T ss_pred HHHHHHHHhhc-CceEEEEEEEEEEEEEEcC-------------hHHHHHHHHHHHCCeEEecC----CCCEEEEeCCCC
Confidence 99999987632 211 23456678888764 46788888883349999986 36899998874
Q ss_pred -CHHHHHHHHHHHHHHH
Q 018665 328 -SLTTLQAAVERIKKGL 343 (352)
Q Consensus 328 -~~~~l~~~~~~l~~~~ 343 (352)
+++++++++++|++++
T Consensus 378 ~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 378 IEKEDLERVVEAVRAVL 394 (395)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 8999999999999876
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=240.15 Aligned_cols=292 Identities=13% Similarity=0.086 Sum_probs=204.7
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc--------CCCCEEEecCCCCCCh-----------------HH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC--------SPGDEVIIPAPFWVSY-----------------PE 75 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~~~~vl~~~~~~~~~-----------------~~ 75 (352)
+.++++++ +++++|++++|+++++..++.++. ++||+|+++.|+|..+ ..
T Consensus 68 ~~la~~~g-----~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~ 142 (432)
T 3a9z_A 68 ASLAKMIG-----GKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEH 142 (432)
T ss_dssp HHHHHHHT-----CCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHH
T ss_pred HHHHHHcC-----CCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHH
Confidence 99999986 567899999999999999999885 4789999999999875 33
Q ss_pred HHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC----------EE
Q 018665 76 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR----------LL 145 (352)
Q Consensus 76 ~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~----------~~ 145 (352)
.++..|.+++.++++. .++.+|+++|++++++++++|++++|+||||.++| +++|.++|+++ + ++
T Consensus 143 ~~~~~g~~v~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~-~~~~~~~~~~~~~ 217 (432)
T 3a9z_A 143 LVEDQVAEVTFVPVSK-VNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMP---ISEISRRIKAL-NQIRAASGLPRVL 217 (432)
T ss_dssp HHHTTSCEEEEECCCT-TTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHH-HHHHHHHTCCCCE
T ss_pred HHHhcCcEEEEEecCc-ccCCcCHHHHHHhccCCceEEEEECcccCcccccC---HHHHHHHHHhc-CcccccccCCceE
Confidence 4456799999999874 23468999999999989999999999999999999 78899999999 8 99
Q ss_pred EEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhH-HHHHHhh-------hhccccCCC
Q 018665 146 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNKI-------QSQFTSGAS 217 (352)
Q Consensus 146 livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~-~~~~~~~-------~~~~~~~~~ 217 (352)
+|+|++|+.+ .....+... +..+++.|+||.+| .++||++++++. ...+... .....++++
T Consensus 218 livDea~~~~----~~~~~~~~~----~~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (432)
T 3a9z_A 218 VHTDAAQALG----KRRVDVEDL----GVDFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTEN 286 (432)
T ss_dssp EEEECTTTTT----TSCCCHHHH----CCSEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCC
T ss_pred EEEEchhhhC----CcccChhhc----CCCEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcC
Confidence 9999999753 222222222 22367899999875 459999998765 2222211 122334578
Q ss_pred hHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceec--CC-----CCceEEEeecCCccCCcccCCCC
Q 018665 218 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS--EP-----QGAFYLFIDFSTYYGSEAEGFGK 290 (352)
Q Consensus 218 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~--~~-----~~g~~~~~~~~~~~~~~~~~~~~ 290 (352)
...+.++.++++. ..++++++.++++++++++.+.|++++|+.+. .+ ..+..+++.+++..
T Consensus 287 ~~~~~a~~aal~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 354 (432)
T 3a9z_A 287 TPMIAGLGKAADL---VSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ--------- 354 (432)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT---------
T ss_pred HHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC---------
Confidence 8888888777764 24567888899999999999999886565443 22 22334555555420
Q ss_pred CCChHHHHHHHHHccCEEeccCCCCC---------------C-----CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 291 IENSESLCRYLLDKAQVALVPGDAFG---------------D-----DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 291 ~~~~~~~~~~l~~~~gi~i~~g~~~~---------------~-----~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+..++.+.+ .++.+..|..+. . .+++||+++. +++|++++++.|++++++++.
T Consensus 355 -~~~~~~~~~l---~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 355 -LRGYMVLAQC---QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp -CCHHHHHHHC---SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred -CcHHHHHHHh---cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 0455565543 267776664332 1 3789999997 899999999999999988765
Q ss_pred C
Q 018665 349 G 349 (352)
Q Consensus 349 ~ 349 (352)
+
T Consensus 431 ~ 431 (432)
T 3a9z_A 431 P 431 (432)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=232.21 Aligned_cols=297 Identities=17% Similarity=0.239 Sum_probs=219.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|.+.++..++| +.++++++ ..+.|++++ |++++..++.++ .++||+|+++.|+|.++...++..|
T Consensus 33 ~~~~~~~~~~l~------~~la~~~~------~~~~i~~~s-Gt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g 99 (388)
T 1b9h_A 33 WRMGGDEVNSFE------REFAAHHG------AAHALAVTN-GTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLG 99 (388)
T ss_dssp BTTTCSHHHHHH------HHHHHHTT------CSEEEEESC-HHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTT
T ss_pred eecCCHHHHHHH------HHHHHHhC------CCeEEEeCC-HHHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHHHcC
Confidence 356677788899 99999986 235566665 589999999999 8899999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc-cccCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPA 160 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~-~~~~~~ 160 (352)
.+++.++++. +++.+|+++|++++++++++|+ |+||+|.+.+ +++|.++|+++ |+++|+|++|+. ..+.+.
T Consensus 100 ~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i~~la~~~-~~~li~D~a~~~g~~~~~~ 171 (388)
T 1b9h_A 100 AVTVPVDVDA-ATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAKISADT-GVPLLQDAAHAHGARWQGK 171 (388)
T ss_dssp CEEEEECBCT-TTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHH-TCCBCEECTTCTTCEETTE
T ss_pred CEEEEEecCC-CcCCCCHHHHHHhcCcCceEEE---EeCCccCcCC---HHHHHHHHHHc-CCEEEEecchhcCCccCCe
Confidence 9999999874 3467899999999988888766 9999999998 89999999999 999999999985 323221
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChh-H--HHHHHhhhhc---------------cccCCChHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-F--VAACNKIQSQ---------------FTSGASSISQK 222 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~--~~~~~~~~~~---------------~~~~~~~~~~~ 222 (352)
.+..+ + ++.+.|+||..+++|.++|+++++++ + ++.+...... ++..++.+...
T Consensus 172 ---~~~~~----~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a 243 (388)
T 1b9h_A 172 ---RVGEL----D-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSAS 243 (388)
T ss_dssp ---EGGGS----S-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHH
T ss_pred ---ecccc----c-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHH
Confidence 12221 1 47788888554445568999998876 5 5655433211 11113433333
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC------CCCceEEEeecCCccCCcccCCCCCCChHH
Q 018665 223 AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE------PQGAFYLFIDFSTYYGSEAEGFGKIENSES 296 (352)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
++... .+++++..++++++++++.+.|++++++.+.. +.+++++|+.+++..+ .+..+
T Consensus 244 ~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 307 (388)
T 1b9h_A 244 VLRAQ-------LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE---------ERRNA 307 (388)
T ss_dssp HHHHH-------HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH---------HHHHH
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCc---------ccHHH
Confidence 22222 34466677888889999999999888888765 3457789999875200 04667
Q ss_pred HHHHHHHccCEEeccCCCCC----------------------C-------CCeEEEEeec---CHHHHHHHHHHHHHHHh
Q 018665 297 LCRYLLDKAQVALVPGDAFG----------------------D-------DTCIRISYAA---SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 297 ~~~~l~~~~gi~i~~g~~~~----------------------~-------~~~iRi~~~~---~~~~l~~~~~~l~~~~~ 344 (352)
+.+.|.++ ||.+.++.... . .+.+||++.. +++|++++++.|+++++
T Consensus 308 l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~ 386 (388)
T 1b9h_A 308 LVDRLVEA-GLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVA 386 (388)
T ss_dssp HHHHHHHT-TCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence 88888875 99998764210 0 1258999875 78999999999999886
Q ss_pred h
Q 018665 345 T 345 (352)
Q Consensus 345 ~ 345 (352)
+
T Consensus 387 ~ 387 (388)
T 1b9h_A 387 R 387 (388)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=231.64 Aligned_cols=297 Identities=15% Similarity=0.139 Sum_probs=212.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC--EEEecCCCCCChH---HHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD--EVIIPAPFWVSYP---EMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~--~vl~~~~~~~~~~---~~~ 77 (352)
.|+++++..+++ +.++++++ . +..++++|+++++..++.++.+++| .|+++.+.|.... ...
T Consensus 42 ~y~~~~~~~~l~------~~la~~~~------~-~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~ 108 (357)
T 3lws_A 42 QYGTGAIIEPFE------QKFADVLG------M-DDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLK 108 (357)
T ss_dssp ETTEETTHHHHH------HHHHHHHT------C-SEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHH
T ss_pred cccCChHHHHHH------HHHHHHhC------C-CcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhh
Confidence 477778888999 99999986 2 3345558888999999999888877 6666666544332 245
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEecccccc--
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-- 154 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~npt-G~~~~~~~l~~l~~~~~~~~~~~livD~~~~~-- 154 (352)
...|.+++.++. .++.+|+++|+++. +++++++++|+||+ |.+++.+++++|+++|+++ |+++|+|++|..
T Consensus 109 ~~~g~~~~~v~~---~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~ 182 (357)
T 3lws_A 109 ELHPIETILVGA---ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRER-GIRLHLDGARLFEM 182 (357)
T ss_dssp HHSSCEEEECSC---TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHT-TCEEEEEETTHHHH
T ss_pred hccCcEEEEecC---CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHc-CCEEEEECchhhhh
Confidence 667999888874 33468999999884 38999999999998 9999999999999999999 999999999862
Q ss_pred cccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCC--ChHHHHHHHHHhcccC
Q 018665 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA--SSISQKAGVAALGLGY 232 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 232 (352)
..+.+.....+. ...+ +++.|+||.++.++ .|++++++++++.+......+..+. ....+.++..+++.
T Consensus 183 ~~~~~~~~~~~~---~~~d--~~~~s~sK~~~~~~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 253 (357)
T 3lws_A 183 LPYYEKTAAEIA---GLFD--SIYISFYKGLGGIA--GAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYEL-- 253 (357)
T ss_dssp HHHHTCCHHHHH---TTSS--EEEEESSSTTCCSS--CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH--
T ss_pred hhhcCCChHHHH---hcCC--EEEEeccccCCCCc--eEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH--
Confidence 111122112221 1122 45889999994232 2999999999998876554433222 23333334444432
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCceec-CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~ 311 (352)
+.+. .+++.++++++.+.|++++++.+. .+..++++|++++.... .+..++.+.|.++ ||.+.|
T Consensus 254 ----~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~-Gi~v~~ 318 (357)
T 3lws_A 254 ----RKDR-MGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA---------DISPKLEQVQEET-GLGFVG 318 (357)
T ss_dssp ----HTTC-HHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHH---------HHHHHHHHHHHHH-CEESCS
T ss_pred ----HHHH-HHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChH---------HHHHHHHHHHHhc-CeEEec
Confidence 2222 334567788899999998899884 56778889999875210 0256788887765 999999
Q ss_pred CCCCCCCC--eEEEEeec-----CHHHHHHHHHHHHHHH
Q 018665 312 GDAFGDDT--CIRISYAA-----SLTTLQAAVERIKKGL 343 (352)
Q Consensus 312 g~~~~~~~--~iRi~~~~-----~~~~l~~~~~~l~~~~ 343 (352)
|..+. ++ ++|+++.. +.+++++++++|++++
T Consensus 319 g~~~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 319 YLVDK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp CCEEC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred ccccC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 86654 44 89999863 7799999999998875
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-30 Score=234.40 Aligned_cols=288 Identities=13% Similarity=0.140 Sum_probs=203.6
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC-CCCEEEecCCCCCChHHH-HHhcC-------------CeE
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS-PGDEVIIPAPFWVSYPEM-ARIAD-------------ATP 84 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-~~~~vl~~~~~~~~~~~~-~~~~g-------------~~v 84 (352)
..+++.+. ..+... +++|++++|+++++..+++++.. .+++|++++|+|+++... +...| ..+
T Consensus 89 ~~l~~~la~~~~~~~-~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (419)
T 2eo5_A 89 LELAKKLVTYSPGNF-QKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGV 167 (419)
T ss_dssp HHHHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTE
T ss_pred HHHHHHHHHhCCCCc-CCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCC
Confidence 44444444 344332 68999999999999999987643 378999999999865543 32211 256
Q ss_pred EEecccCCCC--cc------------cCHHHHH-hhcc-----CCeeEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCC
Q 018665 85 VILPTRISEN--FL------------LDPKVLE-SKLT-----EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHP 142 (352)
Q Consensus 85 ~~i~~~~~~~--~~------------~d~~~l~-~~l~-----~~~~~i~i~~p-~nptG~-~~~~~~l~~l~~~~~~~~ 142 (352)
+.++.+.... ++ +|+++|+ ++++ +++++++ ++| +||||. .++.+++++|.++|+++
T Consensus 168 ~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~- 245 (419)
T 2eo5_A 168 IHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIF-FEPIQGEGGYVIPPKNFFAELQKLAKKY- 245 (419)
T ss_dssp EEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHH-
T ss_pred EEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEE-EeCccCCCCCccCCHHHHHHHHHHHHHc-
Confidence 7777653211 11 3688999 8886 3445555 555 568896 66788999999999999
Q ss_pred CEEEEecccccccccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhhhhccccCCChHHH
Q 018665 143 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQ 221 (352)
Q Consensus 143 ~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
|+++|+||+|.++.+.+.. ..+..... .++ +.|+||.+| +| +|+||++++++++ .+ ......+++.|++.+
T Consensus 246 ~~~li~DE~~~~~g~~g~~-~~~~~~~~-~~d---~~t~sK~~~-~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~ 317 (419)
T 2eo5_A 246 GILLVDDEVQMGLGRTGKL-FAIENFNT-VPD---VITLAKALG-GGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALAC 317 (419)
T ss_dssp TCEEEEECTTTTTTTTSSS-SGGGGGTC-CCS---EEEECGGGG-TTTSCCEEEEEEGGGC-CC-------CCCCCHHHH
T ss_pred CCEEEEeccccCCccCcch-hhHHhcCC-CCC---EEEeccccc-CCccceEEEEEchHhh-cC-CcccCCCCCCCHHHH
Confidence 9999999999988665531 11111111 222 337999999 69 9999999998877 66 323345677899999
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecC-CccCCcccCCCCCCChHHHHHH
Q 018665 222 KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS-TYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
.++.++++. . +++.++++++++++.+.|+++ +....+ .|.+++++++ ... .+. +.+.
T Consensus 318 ~aa~aal~~----~---~~~~~~~~~~~~~l~~~L~~~--~~~~~~-~g~~~~i~~~~~~~-----------~~~-~~~~ 375 (419)
T 2eo5_A 318 AIGSKVIDI----V---KDLLPHVNEIGKIFAEELQGL--ADDVRG-IGLAWGLEYNEKKV-----------RDR-IIGE 375 (419)
T ss_dssp HHHHHHHHH----H---HHHHHHHHHHHHHHHHHHTTS--SSEEEE-ETTEEEEECSCHHH-----------HHH-HHHH
T ss_pred HHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHh--hhheEe-eeEEEEEEEecCcc-----------HHH-HHHH
Confidence 999999874 1 227788889999999999876 333333 3556778873 210 355 8888
Q ss_pred HHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 301 LLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 301 l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
|.++ ||.+.+++ ++++||+++. +++++++++++|+++++++
T Consensus 376 l~~~-Gv~v~~~~----~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 376 SFKR-GLLLLPAG----RSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp HHHT-TEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHC-CCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 8865 99999864 6799998764 8999999999999998764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=232.74 Aligned_cols=322 Identities=11% Similarity=0.025 Sum_probs=223.1
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChH
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYP 74 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~ 74 (352)
|....+..+.+ +.+++.+. ..+ ...++|++++|+++|++.+++++.. +++.|++.+++|+++.
T Consensus 87 ~~~~~~~~~~~------~~la~~l~~~~~--~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~ 158 (460)
T 3gju_A 87 HAYVGHGTEAS------ITLAKMIIDRAP--KGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSG 158 (460)
T ss_dssp CCCTTCCCHHH------HHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSS
T ss_pred ccccccCCHHH------HHHHHHHHhhCC--CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCC
Confidence 33334455666 77777776 332 4567999999999999999998763 4689999999999877
Q ss_pred HHHHhcC-------------CeEEEecccCC---CCcccC--------HHHHHhhcc----CCeeEEEEcCCCCCccc-C
Q 018665 75 EMARIAD-------------ATPVILPTRIS---ENFLLD--------PKVLESKLT----EKSRLLILCSPSNPTGS-V 125 (352)
Q Consensus 75 ~~~~~~g-------------~~v~~i~~~~~---~~~~~d--------~~~l~~~l~----~~~~~i~i~~p~nptG~-~ 125 (352)
......+ ..+..++.+.. .+.+.+ +++|+++++ +++++|+++.++|++|. +
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~ 238 (460)
T 3gju_A 159 VMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVP 238 (460)
T ss_dssp HHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBC
T ss_pred HHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCcc
Confidence 5544321 23445554321 111122 688888885 46677777766788886 6
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHH
Q 018665 126 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAA 204 (352)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~ 204 (352)
++.+++++|.++|++| |+++|+||+|+++.+.|... ....... ...+.++||.++ +| +|+|++++++++++.
T Consensus 239 ~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~g~~~-~~~~~~~----~pdi~t~sK~l~-gG~~~lg~v~~~~~i~~~ 311 (460)
T 3gju_A 239 PPAGYWEKIQAVLKKY-DVLLVADEVVTGFGRLGTMF-GSDHYGI----KPDLITIAKGLT-SAYAPLSGVIVADRVWQV 311 (460)
T ss_dssp CCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSC-HHHHHTC----CCSEEEECGGGT-TTSSCCEEEEEEHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCEEEEeccccCCCcccccc-hHhhcCC----CCCeeeeehhhc-CCCCCeEEEEECHHHHHH
Confidence 7788899999999999 99999999999887665321 1111111 112457899997 56 899999999999998
Q ss_pred HHhh-------hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeec
Q 018665 205 CNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 277 (352)
Q Consensus 205 ~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~ 277 (352)
+... ....+++.|++.++++.++++.... ++..+++.+..+..++.+.+.+++++.+..+.+.+ .++++++
T Consensus 312 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g-~~~~~~~ 389 (460)
T 3gju_A 312 LVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE-MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDG-MLAAVEF 389 (460)
T ss_dssp HHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEET-TEEEEEE
T ss_pred HhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeee-EEEEEEE
Confidence 8532 3445678999999999999984211 34566666666777777777777776666655444 4566666
Q ss_pred CCccCCcccCCC-CCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 278 STYYGSEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 278 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
........ .+. ......++.+.|+++ ||.+.|++ .++++||+++. +++++++++++|+++++++.
T Consensus 390 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~-Gv~v~~~~---~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 390 VADKDDRV-FFDASQKIGPQVATALAAS-GVIGRAMP---QGDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp CSBTTTTB-CCCGGGCHHHHHHHHHHHT-TEECEECS---SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccc-cccchHHHHHHHHHHHHHC-CeEEecCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 53211000 000 000256788888876 99999875 35899999765 99999999999999998764
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=228.31 Aligned_cols=281 Identities=16% Similarity=0.097 Sum_probs=202.2
Q ss_pred CCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH---HHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeE
Q 018665 36 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRL 112 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~---~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~ 112 (352)
++++++++|+++++..++.++ +||+|+++.|+|+++.. .++..|.+++.+ .|+++++++ ++++++
T Consensus 76 ~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~~~~~~ 143 (374)
T 2aeu_A 76 NDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-IDKDTL 143 (374)
T ss_dssp TEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-CCTTEE
T ss_pred cceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-CCCccE
Confidence 478999999999999999988 89999999998887554 677889998887 278999988 778999
Q ss_pred -EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccce
Q 018665 113 -LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 191 (352)
Q Consensus 113 -i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~ 191 (352)
|++++|+||||. +..++++|.++|+++ |+++|+||+|+.+........+... .+.++++.|+||.+ +|+|
T Consensus 144 ~v~~~~p~nptG~--~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~----~~~di~~~S~sK~l--~g~~ 214 (374)
T 2aeu_A 144 VIITGSTMDLKVI--ELENFKKVINTAKNK-EAIVFVDDASGARVRLLFNQPPALK----LGADLVVTSTDKLM--EGPR 214 (374)
T ss_dssp EEEECBCTTSCBC--CHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHTTCCCHHH----HTCSEEEEETTSSS--SSCS
T ss_pred EEEEccCCCCCCC--CcccHHHHHHHHHHc-CCEEEEECCcccccccccccCCccc----cCCcEEEecCcccc--cCcc
Confidence 999999999996 556699999999999 9999999999875310000011111 13458899999996 4679
Q ss_pred eEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHH----HHHHHHHhccc---CCcee
Q 018665 192 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER----RDFLVKSFGEL---EGVKM 264 (352)
Q Consensus 192 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~---~g~~~ 264 (352)
+||+++++++++.+......++.+++++.+.++.++++.. ..+.+++..+..+.. ++.+.+.|..+ +|+.+
T Consensus 215 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~ 292 (374)
T 2aeu_A 215 GGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNF--NLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVY 292 (374)
T ss_dssp CEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEE
T ss_pred eEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcce
Confidence 9999999999999887765556678889998888888762 122333333333333 56666666654 35665
Q ss_pred cCCCCceE-EEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-CCCeEEEEeec---CHHHHHHHHHHH
Q 018665 265 SEPQGAFY-LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-DDTCIRISYAA---SLTTLQAAVERI 339 (352)
Q Consensus 265 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-~~~~iRi~~~~---~~~~l~~~~~~l 339 (352)
..+..|++ .|...+.... ..+..+++..+++++||.+.||..|. .++++||+++. .+++++++.+.|
T Consensus 293 ~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l 364 (374)
T 2aeu_A 293 ERTPTGFVIKRVYKDDTIN--------IKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAI 364 (374)
T ss_dssp EECSSEEEEEEEESSHHHH--------HHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHH
T ss_pred eeCCceEEEEeeccccccc--------ccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHH
Confidence 44444444 4444332100 00112366666666699999987653 35699999975 223589999999
Q ss_pred HHHHhhhC
Q 018665 340 KKGLLTLR 347 (352)
Q Consensus 340 ~~~~~~~~ 347 (352)
+++++++.
T Consensus 365 ~~~l~~~~ 372 (374)
T 2aeu_A 365 VESIKMAF 372 (374)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99988765
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-30 Score=236.15 Aligned_cols=323 Identities=14% Similarity=0.089 Sum_probs=216.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHHHHh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~~~ 79 (352)
+|....+..+.+ ..+++.+. ..+.. ..++|++++|+++|++.+++.+.. .+++|++.+++|+++...+..
T Consensus 98 ~~~~~~~~~~~~------~~la~~l~~~~~~~-~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~ 170 (453)
T 4ffc_A 98 HTCFMVTPYEQY------VQVAELLNALTPGD-HDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMA 170 (453)
T ss_dssp CCTTTTSCCHHH------HHHHHHHHHHSSCS-SCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHH
T ss_pred ccccCcCCCHHH------HHHHHHHHHhCCCC-CCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHh
Confidence 344444556666 66667766 33321 257999999999999999987642 457999999999987755543
Q ss_pred cCC--------------eEEEecccCC--CCcccC--------HHHHHhhccCCeeEEEEcCCCCCcc--cCCCHHHHHH
Q 018665 80 ADA--------------TPVILPTRIS--ENFLLD--------PKVLESKLTEKSRLLILCSPSNPTG--SVYPKNLLDE 133 (352)
Q Consensus 80 ~g~--------------~v~~i~~~~~--~~~~~d--------~~~l~~~l~~~~~~i~i~~p~nptG--~~~~~~~l~~ 133 (352)
.+. .+..++.+.. +.++.+ ++.|++.+.++..+++++.|.|++| ..++.+++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~ 250 (453)
T 4ffc_A 171 LTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLAT 250 (453)
T ss_dssp HCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHH
T ss_pred hcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHH
Confidence 311 4555555421 111222 4667777765556666667765554 4457788999
Q ss_pred HHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccc
Q 018665 134 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 213 (352)
Q Consensus 134 l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~ 213 (352)
|.++|++| |+++|+||+|.++.+.|.. ...... +....+.++||.++ +|+|+||+++++++++.+.......+
T Consensus 251 l~~l~~~~-~~llI~DEv~~g~g~~g~~-~a~~~~----~~~pdi~t~sK~~~-~G~~~G~~~~~~~i~~~~~~~~~~~t 323 (453)
T 4ffc_A 251 LTAWASEN-GVVFIADEVQTGFARTGAW-FASEHE----GIVPDIVTMAKGIA-GGMPLSAVTGRAELMDAVYAGGLGGT 323 (453)
T ss_dssp HHHHHHHH-TCEEEEECTTTTTTTTSSS-STHHHH----TCCCSEEEECGGGG-TTSSCEEEEEEHHHHTTSCTTSSCCS
T ss_pred HHHHHHHc-CCEEEEecCccCCCccccc-chhhhc----CCCcchHhhhhhhc-CCcCeEEEEECHHHHhhhcccCcCCC
Confidence 99999999 9999999999988666532 111111 11222567899998 58999999999999888876666677
Q ss_pred cCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCC
Q 018665 214 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 293 (352)
Q Consensus 214 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
++.|++.+.++.++++.... ++..++..+..+..++.+.+.+++++.+..+.+ .|.++++++.+........ ..
T Consensus 324 ~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~----~~ 397 (453)
T 4ffc_A 324 YGGNPVTCAAAVAALGVMRE-LDLPARARAIEASVTSRLSALAEEVDIIGEVRG-RGAMLAIEIVKPGTLEPDA----AL 397 (453)
T ss_dssp SSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEE-ETTEEEEEEBCTTSCCBCH----HH
T ss_pred CCcCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-eceEEEEEEecCcccCCCH----HH
Confidence 88999999999999874211 233444444444444455555455555554443 3556777764310000000 13
Q ss_pred hHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 294 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 294 ~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
..++.+.|+++ ||.+.|++.+ .+++|++++. +++++++++++|+++++++..
T Consensus 398 ~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 398 TKSIAAEALSQ-GVLILTCGTF--GNVIRLLPPLVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp HHHHHHHHHHT-TEECCEECTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhC-CCEEecCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 56788888876 9999997644 4789998876 899999999999999988754
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=232.08 Aligned_cols=284 Identities=13% Similarity=0.130 Sum_probs=206.2
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcCCeEEEecccCCCCc
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENF 95 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g~~v~~i~~~~~~~~ 95 (352)
+.+++++. ..| .+++++++|+++++..++. ++++||+|+++.|.|.++... ++..|.+++.++.+
T Consensus 136 ~~l~~~la~~~g----~~~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~----- 205 (464)
T 1ibj_A 136 DALESLLAKLDK----ADRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT----- 205 (464)
T ss_dssp HHHHHHHHHHHT----CSEEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-----
T ss_pred HHHHHHHHHHhC----CCeEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 44444444 333 3478888888999987775 778999999999999988764 46689999999863
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
|+++|++++++++++|++++|+||+|.+++ +++|+++|+++ |+++|+||+|... ....++. .+++
T Consensus 206 --d~~~l~~~i~~~tk~v~l~~p~NptG~v~~---l~~i~~la~~~-gi~livDea~~~g----~~~~~~~-----~~~d 270 (464)
T 1ibj_A 206 --KLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKISEMAHAQ-GALVLVDNSIMSP----VLSRPLE-----LGAD 270 (464)
T ss_dssp --SHHHHHHHCCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTT-TCEEEEECTTTCT----TTCCGGG-----TTCS
T ss_pred --CHHHHHHHhccCceEEEEeCCCCCCCEeec---HHHHHHHHHHc-CCEEEEECCCccc----ccCChhh-----cCCE
Confidence 899999999989999999999999999998 99999999999 9999999999752 1111221 3567
Q ss_pred EEEecccccccc-ccceeEEEEcCh-hHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAM-TGWRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 176 i~~~s~sK~~g~-~g~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
+++.|+||.++. +|+++|++++++ ++++.+.......+.+.+++.+.++.++++. ....+++.........+++.
T Consensus 271 iv~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~---~~~r~~~~~~~~~~l~~~l~ 347 (464)
T 1ibj_A 271 IVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT---MALRIEKQQENARKIAMYLS 347 (464)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHH
Confidence 999999999863 388999999985 7888887766555566788888888888764 12233333333333333333
Q ss_pred ----------HHhcccCCceecCCC---CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC-------
Q 018665 254 ----------KSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD------- 313 (352)
Q Consensus 254 ----------~~l~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~------- 313 (352)
+.|+++|++.+..++ .|.++++++++. .....+.+.|.. .||.+.+|.
T Consensus 348 ~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~-----------~~~~~~~~~L~~-~gi~v~~G~~~sl~~~ 415 (464)
T 1ibj_A 348 SHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV-----------ALSKHLVETTKY-FSIAVSFGSVKSLISM 415 (464)
T ss_dssp TCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH-----------HHHHHHHHHCSS-SEECSCCCSSSCEEEC
T ss_pred hCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCH-----------HHHHHHHHhcCc-ceEeecCCCCceeeec
Confidence 234445566666543 244677777431 023457776654 588888875
Q ss_pred -----CC----------C-CCCeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 314 -----AF----------G-DDTCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 314 -----~~----------~-~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
.+ + .++++|++++. |+++++++.|+++++++
T Consensus 416 p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 416 PCFMSHASIPAEVREARGLTEDLVRISAGI--EDVDDLISDLDIAFKTF 462 (464)
T ss_dssp TTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCHHHHHHHHHHHHHSC
T ss_pred ccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHhhc
Confidence 11 1 15789999998 89999999999998754
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=236.44 Aligned_cols=316 Identities=13% Similarity=0.079 Sum_probs=212.5
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHh--cCCCCEEEecCCCCCChHHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l--~~~~~~vl~~~~~~~~~~~~~~ 78 (352)
+|+...+..+++ +.+++.+. ..+. .. +++++++|+++++..+++++ ..++++|++.++.|++......
T Consensus 77 ~~~~~~~~~~~~------~~l~~~la~~~~~--~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~ 148 (439)
T 3dxv_A 77 GATILSASNAPA------VTLAERLLASFPG--EGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSM 148 (439)
T ss_dssp CSCSSSSEEHHH------HHHHHHHHHTTTC--TTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHH
T ss_pred CccccccCCHHH------HHHHHHHHHhCCC--CCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHH
Confidence 344445556666 77777777 3332 34 79999999999999999885 2356789998998877665444
Q ss_pred hc-CCe--------------EEEecccCCCCccc-----CHHHHHhhc----cCCeeEEEEcCCCCCcccCC-CHHHHHH
Q 018665 79 IA-DAT--------------PVILPTRISENFLL-----DPKVLESKL----TEKSRLLILCSPSNPTGSVY-PKNLLDE 133 (352)
Q Consensus 79 ~~-g~~--------------v~~i~~~~~~~~~~-----d~~~l~~~l----~~~~~~i~i~~p~nptG~~~-~~~~l~~ 133 (352)
.. +.. +..++.+ ..+.. |++.|++++ .++++++++++++|++|... +.+++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~ 226 (439)
T 3dxv_A 149 AFSGHSVQADAAKADGLILLPYPDPYR--PYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRK 226 (439)
T ss_dssp CC-------------CEEEECCCCSSS--CBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHH
T ss_pred hhcCCCchhhccccCCCCCCcEEcCCC--cccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHH
Confidence 33 221 1233332 11112 689999988 45778888888888888765 4556999
Q ss_pred HHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccc
Q 018665 134 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 213 (352)
Q Consensus 134 l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~ 213 (352)
|.++|++| |+++|+||+|+++.+.+.. ........ ..+ +.|+||.+| +|+|+||+++++++++.+.......+
T Consensus 227 l~~l~~~~-~~~li~DE~~~g~g~~g~~-~~~~~~~~-~~d---i~s~sK~~~-~G~riG~~~~~~~~~~~~~~~~~~~t 299 (439)
T 3dxv_A 227 FADICRAH-GILVVCDEVKVGLARSGRL-HCFEHEGF-VPD---ILVLGKGLG-GGLPLSAVIAPAEILDCASAFAMQTL 299 (439)
T ss_dssp HHHHHHHT-TCEEEEECTTTCTTTTSSS-SGGGGTTC-CCS---EEEECGGGG-TTSCCEEEEEEHHHHTSCSSSSCCTT
T ss_pred HHHHHHHc-CCEEEEeccccCCCcCchh-hHHHhcCC-CCC---EEEEcchhc-CCcceEEEEECHHHHhhhcCCCcCCC
Confidence 99999999 9999999999987655531 11111111 122 338999999 79999999999999888766544566
Q ss_pred cCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhc----ccCCceecCCCCceEEEeecCCccCCcccCCC
Q 018665 214 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG----ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 289 (352)
Q Consensus 214 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 289 (352)
+ .+++.+.++.++++.. +. +++.++++++.+++.+.|+ .++.+....+. |.++++++.........
T Consensus 300 ~-~~~~~~~aa~aal~~~----~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~--- 369 (439)
T 3dxv_A 300 H-GNPISAAAGLAVLETI----DR-DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGR-GLACGMELVCDRQSREP--- 369 (439)
T ss_dssp T-TCHHHHHHHHHHHHHH----HH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEEEETTTTEE---
T ss_pred c-ccHHHHHHHHHHHHHH----Hh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCC---
Confidence 6 8999999988888741 11 3334444555555555444 34445554444 55566665211000000
Q ss_pred CCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 290 KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 290 ~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
......++.+.|+++ ||.+.|+..+ ++++|++++. +++++++++++|+++++++.+
T Consensus 370 ~~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 370 ARAETAKLIYRAYQL-GLVVYYVGMN--GNVLEFTPPLTITETDIHKALDLLDRAFSELSA 427 (439)
T ss_dssp CHHHHHHHHHHHHHH-TEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred CHHHHHHHHHHHHHC-CcEEeecCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 001467788888877 9999997532 5899998765 899999999999999988754
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=228.42 Aligned_cols=298 Identities=13% Similarity=0.072 Sum_probs=212.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCE--EEecCCCCCChH---HHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE--VIIPAPFWVSYP---EMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~--vl~~~~~~~~~~---~~~ 77 (352)
.|+++++..+++ +.++++++ .+..++++|+++++..++.++.+++|+ |+++.+.|.... ...
T Consensus 43 ~~~~~~~~~~l~------~~la~~~~-------~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~ 109 (359)
T 3pj0_A 43 IYGNGAVIEDFE------TKIAKILG-------KQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLK 109 (359)
T ss_dssp BTTBSHHHHHHH------HHHHHHHT-------CSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHH
T ss_pred cccCCHHHHHHH------HHHHHHhC-------CCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHH
Confidence 467777888999 99999986 233355688899999999998887776 555555443222 223
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEecccccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 156 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~npt-G~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~ 156 (352)
...|.+++.++.+ ++.+|+++|+++ .+++++|++++|+||+ |.++|.+++++|+++|+++ |+++|+|+++..+.
T Consensus 110 ~~~g~~~~~v~~~---~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~-~~~li~D~a~~~~~ 184 (359)
T 3pj0_A 110 ELQQITPLLLGTA---NQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQ-GISLHLDGARLWEI 184 (359)
T ss_dssp HHHCCEEEECSCT---TSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHH-TCEEEEEETTCGGG
T ss_pred HhcCceEEecCCc---CCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHc-CCEEEEECcchhcc
Confidence 5679999998863 456899999998 7789999999999987 7999999999999999999 99999999976432
Q ss_pred c--CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCC--ChHHHHHHHHHhcccC
Q 018665 157 Y--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA--SSISQKAGVAALGLGY 232 (352)
Q Consensus 157 ~--~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 232 (352)
. .+.....+. . ...+++.|+||.++.+ .+ |+++.++++++.+......+..+. ......++..+++.
T Consensus 185 ~~~~~~~~~~~~---~--~~d~~~~s~sK~~~~~-~g-g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-- 255 (359)
T 3pj0_A 185 TPFYQKSAEEIC---A--LFDSVYVSFYKGIGGI-AG-AILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEK-- 255 (359)
T ss_dssp HHHHTCCHHHHH---T--TCSEEEEESSSTTCCS-SC-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH--
T ss_pred hhhhCCCHHHhh---c--cCCEEEEeccccCCCc-ce-EEEECCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH--
Confidence 1 121111111 1 2235667999998634 33 888899999998876544333222 22233333344432
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCceec-CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 311 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~ 311 (352)
.. +..++++++++++.+.|++++|+.+. .+..++++|++++.... .+..++.+.|.++ ||.+.|
T Consensus 256 ----~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~~-GV~v~~ 320 (359)
T 3pj0_A 256 ----RI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSAD---------EIGAILTKIQDET-GVGISG 320 (359)
T ss_dssp ----HG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHH---------HHHHHHHHHHHHH-CEECCS
T ss_pred ----HH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccc---------hhHHHHHHHHHhc-CcEecC
Confidence 22 33445677888999999998899885 56677778887764210 0356788888765 999999
Q ss_pred CCCCCCC--CeEEEEeec-----CHHHHHHHHHHHHHH
Q 018665 312 GDAFGDD--TCIRISYAA-----SLTTLQAAVERIKKG 342 (352)
Q Consensus 312 g~~~~~~--~~iRi~~~~-----~~~~l~~~~~~l~~~ 342 (352)
|..+..+ +++|+++.. +.+++++++++|+++
T Consensus 321 g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 321 YLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp CCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred CccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 9766533 589998862 789999999999875
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=226.00 Aligned_cols=298 Identities=13% Similarity=0.140 Sum_probs=219.0
Q ss_pred ccCC-CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRV-SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~-~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
+|++ ..+..++| +.++++++ .+++++++|+++++..++.++. +||+|+++.|+|.++...++..|
T Consensus 46 ~y~~~~~~~~~l~------~~la~~~~-------~~~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~~~G 111 (424)
T 2po3_A 46 WLSNGGPLVREFE------ERVAGLAG-------VRHAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFAATPHALRWIG 111 (424)
T ss_dssp CCSSSCHHHHHHH------HHHHHHHT-------SSEEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHHHTT
T ss_pred CcccCCHHHHHHH------HHHHHHhC-------CCeEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccHHHHHHHHHcC
Confidence 3655 57778888 99999985 3699999999999999999985 67999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPA 160 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~ 160 (352)
.+++.+++++ .++.+|+++|++.+++++++|++++ |+|...+ +++|.++|+++ |+++|+|++|+ ++.+++.
T Consensus 112 ~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~---l~~i~~la~~~-~~~li~Dea~~~g~~~~~~ 183 (424)
T 2po3_A 112 LTPVFADIDP-DTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCA---ADQLRKVADEH-GLRLYFDAAHALGCAVDGR 183 (424)
T ss_dssp CEEEEECBCT-TTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCC---HHHHHHHHHHT-TCEEEEECTTCTTCEETTE
T ss_pred CEEEEEecCC-CcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCC---HHHHHHHHHHc-CCEEEEECccccCCeECCe
Confidence 9999999874 3567899999999988899888753 8999888 99999999999 99999999999 4555432
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhhcccc---C-----CC-hHHHHHHHHHhcc
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTS---G-----AS-SISQKAGVAALGL 230 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~~~---~-----~~-~~~~~~~~~~l~~ 230 (352)
++... .+ +++.|+||..+++|.|+||++++ +++++.+......... . .+ .+.+.++..++..
T Consensus 184 ---~~~~~----~d-i~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~ 255 (424)
T 2po3_A 184 ---PAGSL----GD-AEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS 255 (424)
T ss_dssp ---ETTSS----SS-EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH
T ss_pred ---ecccc----cC-EEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH
Confidence 22211 12 88999994444456799999998 7888887765332110 0 00 1122223333322
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC-CCCc----eEEEeecCC---ccCCcccCCCCCCChHHHHHHHH
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGA----FYLFIDFST---YYGSEAEGFGKIENSESLCRYLL 302 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~g----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~ 302 (352)
.+.+++..++.+++++++.+.|++++++.+.. +.++ +++++.+++ .. +..++.+.|.
T Consensus 256 ----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~l~~~L~ 320 (424)
T 2po3_A 256 ----LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGI-----------HRDLVMEVLK 320 (424)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSS-----------CHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchh-----------hHHHHHHHHH
Confidence 34566777788888889999999888888875 3332 334466653 11 6788888887
Q ss_pred HccCEEeccCCCCC--------------CCCe-------EEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 303 DKAQVALVPGDAFG--------------DDTC-------IRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 303 ~~~gi~i~~g~~~~--------------~~~~-------iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
++ ||.+.+..... .+++ +|+++.. +++|++++++.|+++++..
T Consensus 321 ~~-gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 321 AE-GVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp HT-TEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HC-CCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 65 99997732100 0122 6666444 8999999999999887654
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-29 Score=229.66 Aligned_cols=284 Identities=14% Similarity=0.124 Sum_probs=210.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc---------CCC-CEEEecCCCCCChH-HHHHhcC--------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC---------SPG-DEVIIPAPFWVSYP-EMARIAD-------- 81 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---------~~~-~~vl~~~~~~~~~~-~~~~~~g-------- 81 (352)
+.+++++ ..+++++++|+++|++.+++.+. .+| ++|++.+|+|++.. ..+...|
T Consensus 125 ~~la~~~-------g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 197 (439)
T 2oat_A 125 EYITKLF-------NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGF 197 (439)
T ss_dssp HHHHHHH-------TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTS
T ss_pred HHHHHhc-------CCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCC
Confidence 6666665 25799999999999999998864 245 89999999998765 3444444
Q ss_pred ----CeEEEecccCCCCcccCHHHHHhhcc-CCeeEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 82 ----ATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 82 ----~~v~~i~~~~~~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
.++..++. .|+++|+++++ +++++++++..++++|. .+|.+++++|.++|+++ |+++|+||+|.++
T Consensus 198 ~p~~~~v~~~~~-------~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~g~ 269 (439)
T 2oat_A 198 GPFMPGFDIIPY-------NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH-QVLFIADEIQTGL 269 (439)
T ss_dssp CSCCTTEEEECS-------SCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTT
T ss_pred CCCCCCeEEeCC-------CCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCC
Confidence 35555553 28999999994 67777776655778896 46888999999999999 9999999999887
Q ss_pred ccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCC
Q 018665 156 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
.++|.. ..+..... ..+ +.|+||.+| +| +|+|++++++++++.+.......+++.|++.+.++.++++.
T Consensus 270 g~~g~~-~~~~~~~~-~~D---i~t~sK~l~-~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~---- 339 (439)
T 2oat_A 270 ARTGRW-LAVDYENV-RPD---IVLLGKALS-GGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV---- 339 (439)
T ss_dssp TTTSSS-SGGGGGTC-CCS---EEEECGGGG-TTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHH----
T ss_pred ccCCcc-hhHHHhCC-CCc---EEEeccccc-CCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHH----
Confidence 665532 11111111 122 338999998 78 89999999999887776544456678899999988888875
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCceec--CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGELEGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
.+. +++.++++++.+++.+.|+++ ++.+. .+..|.++++++++..+ .+..++.+.|.++ ||.+.|+
T Consensus 340 ~~~-~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~~---------~~~~~l~~~l~~~-Gv~v~~~ 407 (439)
T 2oat_A 340 LEE-ENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETKD---------WDAWKVCLRLRDN-GLLAKPT 407 (439)
T ss_dssp HHH-TTHHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCSS---------CCHHHHHHHHHHT-TEECCBS
T ss_pred Hhh-hhHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCcc---------HHHHHHHHHHHHC-CeEEecC
Confidence 111 356677888899999999886 43321 22346667888865210 1577899999876 9999885
Q ss_pred CCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 313 DAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 313 ~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
.++++|++++. +++++++++++|++++++
T Consensus 408 ----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 408 ----HGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp ----SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ----CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 36899998875 999999999999999875
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-30 Score=233.41 Aligned_cols=290 Identities=11% Similarity=0.084 Sum_probs=215.7
Q ss_pred HHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH---HHHHhcCCeEEEecccC-CCCccc
Q 018665 22 QFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARIADATPVILPTRI-SENFLL 97 (352)
Q Consensus 22 ~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~---~~~~~~g~~v~~i~~~~-~~~~~~ 97 (352)
.++++++ .++++|++++| ++++..++.++.++||+|+++.|+|.++. ..++..|..+..++++. ..++.+
T Consensus 77 ~la~~~g-----~~~~~i~~~sG-t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 150 (407)
T 2dkj_A 77 RAKALFG-----AAWANVQPHSG-SQANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELI 150 (407)
T ss_dssp HHHHHHT-----CSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSC
T ss_pred HHHHHhC-----CCcceEEecch-HHHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCcc
Confidence 5666664 44445555555 56999999999999999999999998883 44555565333444321 235678
Q ss_pred CHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc-cccCCCCccccccCCCCCCce
Q 018665 98 DPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 98 d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~-~~~~~~~~~~~~~~~~~~~~~ 175 (352)
|+++|++++++ +++++++++|+|| ...+ +++|.++|+++ |+++|+||+|+. +.+.+.....+ . ..+
T Consensus 151 d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~~~~----~--~~d 218 (407)
T 2dkj_A 151 DLEEVRRLALEHRPKVIVAGASAYP--RFWD---FKAFREIADEV-GAYLVVDMAHFAGLVAAGLHPNPL----P--YAH 218 (407)
T ss_dssp CHHHHHHHHHHHCCSEEEECCSSCC--SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTCSCCCT----T--TCS
T ss_pred CHHHHHHHHhhcCCeEEEEeccccC--CCCC---HHHHHHHHHHc-CCEEEEEccccccccccCccCCcc----c--ccc
Confidence 99999999974 8899999899997 6677 89999999999 999999999987 44444321111 1 246
Q ss_pred EEEeccccccccccceeEEEEcC-hhHHHHHHhhhhccc-cCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT-SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
+++.|+||.+ +|.++|+++++ +++++.+......+. .+++.....++.++++.. ...+++++.++++++++++.
T Consensus 219 i~~~s~sK~l--~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~ 294 (407)
T 2dkj_A 219 VVTSTTHKTL--RGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEA--LQPEFKEYSRLVVENAKRLA 294 (407)
T ss_dssp EEEEESSGGG--CCCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccC--CCCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHH
Confidence 8899999966 56788999999 799888877654443 334554454666666541 13567888999999999999
Q ss_pred HHhcccCCceecC-CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC------CCCCeEEEEee
Q 018665 254 KSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF------GDDTCIRISYA 326 (352)
Q Consensus 254 ~~l~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~------~~~~~iRi~~~ 326 (352)
+.|+++ |+.+.. +..++++++.++... .+..++.+.|.+ .||.+.+|..+ ..++++|++++
T Consensus 295 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~~~~iRis~~ 362 (407)
T 2dkj_A 295 EELARR-GYRIVTGGTDNHLFLVDLRPKG----------LTGKEAEERLDA-VGITVNKNAIPFDPKPPRVTSGIRIGTP 362 (407)
T ss_dssp HHHHHT-TCEEGGGSCSSSEEEEECGGGT----------CCHHHHHHHHHH-TTEECEECCCTTCSSCTTTCSEEEEECH
T ss_pred HHHHhC-CceeecCCCCceEEEEECcccC----------CCHHHHHHHHHH-cCceecCCcCccccccccCCCceeeecc
Confidence 999988 888875 356778888887421 167788888865 59999998643 23578999996
Q ss_pred ------cCHHHHHHHHHHHHHHHhh
Q 018665 327 ------ASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 327 ------~~~~~l~~~~~~l~~~~~~ 345 (352)
.+++++++++++|++++++
T Consensus 363 ~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 363 AITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp HHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhc
Confidence 5889999999999999887
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-29 Score=226.31 Aligned_cols=282 Identities=14% Similarity=0.150 Sum_probs=204.3
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcCC
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADA 82 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g~ 82 (352)
+++..+++ +.++++++ ..+.|+++ ++++++..++.++.++||+|+++.|+|.+.... ++..|.
T Consensus 51 ~~~~~~l~------~~la~~~~------~~~~i~~~-sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~ 117 (386)
T 1cs1_A 51 NPTRDVVQ------RALAELEG------GAGAVLTN-TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_dssp CHHHHHHH------HHHHHHHT------CSEEEEES-SHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred CccHHHHH------HHHHHHhC------CCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence 44556778 99999986 23566664 559999999999999999999999999875543 467899
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++.+ |++++++.+++++++|++++|+||||.+++ +++|.++|+++ |+++|+||+|+.+.+.
T Consensus 118 ~~~~~~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~---- 182 (386)
T 1cs1_A 118 RVLFVDQG-------DEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREV-GAVSVVDNTFLSPALQ---- 182 (386)
T ss_dssp EEEEECTT-------CHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTTC----
T ss_pred EEEEeCCC-------CHHHHHHhhccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCcccccC----
Confidence 99988753 889999999889999999999999999999 99999999999 9999999999876432
Q ss_pred cccccCCCCCCceEEEecccccccccccee-EEEEcCh-hHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~-g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
.++ ..+.++++.|++|.++.+|.++ |++++++ ++++.+......++.+.+++.+.++.+.++. +..
T Consensus 183 ~~~-----~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~ 250 (386)
T 1cs1_A 183 NPL-----ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVP 250 (386)
T ss_dssp CGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-------HHH
T ss_pred Ccc-----ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccH-------HHH
Confidence 111 1356699999999998788776 9999886 7888887766555566788877776666542 344
Q ss_pred HHHHHHHHHHHHHHHhcccCCceec-C----------------CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMS-E----------------PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~-~----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
..+...++.+.+.+.|++++.+... . ...+.++.+.+++ ..+++.+.|.+
T Consensus 251 ~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~ 317 (386)
T 1cs1_A 251 RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-------------DEQTLRRFLGG 317 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-------------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC-------------CHHHHHHHHHh
Confidence 4555666777777777765443221 1 1124445556643 34566666654
Q ss_pred ccCEEeccCCC---------------C----------C-CCCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 304 KAQVALVPGDA---------------F----------G-DDTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 304 ~~gi~i~~g~~---------------~----------~-~~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
.||.+.+.+. + + .++++|++++. ++++++++.+.|+++
T Consensus 318 -~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 318 -LSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp -CSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred -CCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 5888764210 0 1 25799999998 445555555555443
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=224.20 Aligned_cols=279 Identities=13% Similarity=0.114 Sum_probs=200.5
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcCCeEEEecccCCCC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISEN 94 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g~~v~~i~~~~~~~ 94 (352)
+++.+|++++ . + +.++++++++++..++.++.++||+|+++.|+|.++...+ +..|.+++.++.
T Consensus 3 l~~~la~~~g-----~-~-~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----- 70 (331)
T 1pff_A 3 LEGKIAKLEH-----A-E-ACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM----- 70 (331)
T ss_dssp HHHHHHHHHT-----C-S-EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----
T ss_pred HHHHHHHHhC-----C-C-eEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----
Confidence 3499999996 3 3 4555555689999999999999999999999999987665 458999999875
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh-CCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~-~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
.|++++++.+++++++|++++|+||||.++| +++|.++|++ + |+++|+|++|+.+.+. .++ ..+
T Consensus 71 --~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~-~~~li~D~a~~~~~~~----~~~-----~~~ 135 (331)
T 1pff_A 71 --AVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQK-DILVIVDNTFASPILT----NPL-----DLG 135 (331)
T ss_dssp --TSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSS-SCEEEEECTTTHHHHC----CGG-----GGT
T ss_pred --CCHHHHHHhhcCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhc-CCEEEEECCCcccccC----Chh-----hcC
Confidence 3788999999889999999999999999999 9999999999 9 9999999999865432 111 135
Q ss_pred ceEEEeccccccccccce-eEEEEcCh-hHHHHHHhhhhc-cccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWR-LGYIAGPK-HFVAACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 250 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~-~g~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
+++++.|+||.+|.+|.| .|++++++ ++++.+...... ++.+.+++.+.++...++. .....+...+......+
T Consensus 136 ~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~ 212 (331)
T 1pff_A 136 VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT---LDMRVKRAAENAQKVAE 212 (331)
T ss_dssp CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch---HHHHHHHHHHHHHHHHH
Confidence 679999999999878888 79999998 898888876655 5567788777776666643 12222233333333333
Q ss_pred HHHHH----------hcccCCceecCC---CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC---
Q 018665 251 FLVKS----------FGELEGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA--- 314 (352)
Q Consensus 251 ~l~~~----------l~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~--- 314 (352)
.+.+. |.++|++.+..+ ..+.++.+.++ +..++.+.|.+ .||.+.+.+.
T Consensus 213 ~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~-~gI~~~~~s~g~~ 277 (331)
T 1pff_A 213 FLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--------------GLEKAKKVLDN-CHVVSLAVSLGGP 277 (331)
T ss_dssp HHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--------------SHHHHHHHHHT-CSSSEECSSCCSS
T ss_pred HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--------------CHHHHHHHHHh-CCCceeccCCCCc
Confidence 33321 222234444321 13444566654 35566666654 5887655421
Q ss_pred ----------------------CC-CCCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 315 ----------------------FG-DDTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 315 ----------------------~~-~~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
++ .++++|+|++. ++++++++++.|+++
T Consensus 278 ~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 278 ESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred ceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 11 15799999998 678888888888754
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-29 Score=229.93 Aligned_cols=320 Identities=12% Similarity=0.029 Sum_probs=216.3
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChH
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYP 74 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~ 74 (352)
|....+..+.+ +.+++++. ..+ ...++|++++|+++|+..+++.+.+ ++++|++.+|+|+++.
T Consensus 86 ~~~~~~~~~~~------~~la~~l~~~~~--~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~ 157 (459)
T 4a6r_A 86 NTFFKTTHPAV------VELSSLLAEVTP--AGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGST 157 (459)
T ss_dssp CTTSSSCCHHH------HHHHHHHHHHSC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSS
T ss_pred ccccccCCHHH------HHHHHHHHHhCC--CCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCcc
Confidence 33334555666 77777776 443 4567999999999999999998864 5689999999999877
Q ss_pred HHHHhcCC-------------eEEEecccC--C-CCcccC--------HHHHHhhcc----CCeeEEEEcCCCCCccc-C
Q 018665 75 EMARIADA-------------TPVILPTRI--S-ENFLLD--------PKVLESKLT----EKSRLLILCSPSNPTGS-V 125 (352)
Q Consensus 75 ~~~~~~g~-------------~v~~i~~~~--~-~~~~~d--------~~~l~~~l~----~~~~~i~i~~p~nptG~-~ 125 (352)
......+. .+..++.+. . .++ .| +++|++.++ +++++++++.+++++|. .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~ 236 (459)
T 4a6r_A 158 IGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIV 236 (459)
T ss_dssp HHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBC
T ss_pred HHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCccc
Confidence 55543321 334444331 0 111 23 788888885 34556665555666666 4
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHH
Q 018665 126 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 205 (352)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~ 205 (352)
+|.+++++|.++|++| |+++|+||+|.++.+.|... ....... .++ +.++||.++.+|+|+|++++++++++.+
T Consensus 237 ~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~G~~~-~~~~~~~-~pd---i~t~sK~l~gg~~~lg~v~~~~~i~~~~ 310 (459)
T 4a6r_A 237 PPATYWPEIERICRKY-DVLLVADEVICGFGRTGEWF-GHQHFGF-QPD---LFTAAKGLSSGYLPIGAVFVGKRVAEGL 310 (459)
T ss_dssp CCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-HHHHHTC-CCS---EEEECGGGGTTSSCCEEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCEEEEeccccCCCcccccc-hHhhcCC-CCC---eeehhhhhcCCCCCccceeeCHHHHHHh
Confidence 5888999999999999 99999999999887666421 1111111 112 4468899984448999999999999988
Q ss_pred H---hhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH-HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCcc
Q 018665 206 N---KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV-KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 281 (352)
Q Consensus 206 ~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~ 281 (352)
. ......+++.|++.++++.++++.... ++..++.. +..+..++.+.+.|++++.+..+.+.+. ++++++....
T Consensus 311 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~-~~~~~~~~~~ 388 (459)
T 4a6r_A 311 IAGGDFNHGFTYSGHPVCAAVAHANVAALRD-EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGM-VQAFTLVKNK 388 (459)
T ss_dssp HHHCTTHHHHHHCSCHHHHHHHHHHHHHHHH-TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETT-EEEEEECSBT
T ss_pred hcCCCcccCCCCCCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEE-EEEEEEecCc
Confidence 7 334445678999999999999974211 23444555 4455555555566666666666655544 5666665321
Q ss_pred CCcccCCCC-CCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 282 GSEAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 282 ~~~~~~~~~-~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
.... .+.. .....++.+.|+++ ||.+.|++ +++||+++. +++++++++++|+++++++.
T Consensus 389 ~~~~-~~~~~~~~~~~~~~~l~~~-Gv~v~~~g-----~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 389 AKRE-LFPDFGEIGTLCRDIFFRN-NLIMRACG-----DHIVSAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp TTTB-CCSSTTHHHHHHHHHHHHT-TEECEEET-----TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccc-cccchHHHHHHHHHHHHHC-CeEEecCC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1000 0000 00156788888876 99999863 899999765 99999999999999987653
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-29 Score=226.56 Aligned_cols=292 Identities=14% Similarity=0.176 Sum_probs=220.1
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
|.+.++..+++ +.++++++ .+++++++|+++++..++.++ +++||+|+++.|+|.++...++..|.
T Consensus 35 ~~~~~~~~~l~------~~la~~~~-------~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~ 101 (393)
T 1mdo_A 35 ITTGPKNQELE------AAFCRLTG-------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGA 101 (393)
T ss_dssp CSSSHHHHHHH------HHHHHHHC-------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTC
T ss_pred cCCChHHHHHH------HHHHHHhC-------CCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHHHCCC
Confidence 44566777888 99999985 358999999999999999999 89999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc-cccCCCC
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPAT 161 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~-~~~~~~~ 161 (352)
+++.+++++ +++.+|+++|++++++++++|+++ ||+|.+.+ +++|.++|+++ |+++|+|++|+. ..+.+.
T Consensus 102 ~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~---~~~i~~l~~~~-~~~li~D~a~~~g~~~~~~- 172 (393)
T 1mdo_A 102 NPVMVDVDR-DTLMVTPEHIEAAITPQTKAIIPV---HYAGAPAD---LDAIYALGERY-GIPVIEDAAHATGTSYKGR- 172 (393)
T ss_dssp EEEEECBCT-TTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCC---HHHHHHHHHHH-TCCBCEECTTCTTCEETTE-
T ss_pred EEEEEeccC-CcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCC---HHHHHHHHHHc-CCeEEEECccccCCeECCe-
Confidence 999999874 346789999999998888888865 48999988 99999999999 999999999985 333221
Q ss_pred ccccccCCCCCCceEEEeccc--cccccccceeEEEEcC-hhHHHHHHhhhhccc------------------------c
Q 018665 162 HTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT------------------------S 214 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~s--K~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~~------------------------~ 214 (352)
++ .. .++++.|+| |.++ |.+.|+++.+ +++++.+........ .
T Consensus 173 --~~---~~---~d~~~~S~~k~K~l~--~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 242 (393)
T 1mdo_A 173 --HI---GA---RGTAIFSFHAIKNIT--CAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKY 242 (393)
T ss_dssp --ET---TS---SSEEEEECCTTSSSC--SSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBC
T ss_pred --ec---CC---CCeEEEeCCCCCccc--cccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccC
Confidence 11 10 568999999 7764 4489999986 788888765432110 1
Q ss_pred CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC-C-----CCceEEEeecCC---ccCCcc
Q 018665 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-P-----QGAFYLFIDFST---YYGSEA 285 (352)
Q Consensus 215 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~-----~~g~~~~~~~~~---~~~~~~ 285 (352)
..+.+...++...+ +.+++..++.+++++++.+.|++++ +++.. + .+++++++.+++ ..
T Consensus 243 ~~~~~~~a~~~~~l-------~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 310 (393)
T 1mdo_A 243 NLPDLNAAIALAQL-------QKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEARCGI---- 310 (393)
T ss_dssp CCCHHHHHHHHHHH-------HTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHHHSS----
T ss_pred CCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEeccccccc----
Confidence 12333333333333 2245666667778888999998874 66542 2 345568888873 21
Q ss_pred cCCCCCCChHHHHHHHHHccCEEeccCCCC--------------CC-------CCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 286 EGFGKIENSESLCRYLLDKAQVALVPGDAF--------------GD-------DTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~--------------~~-------~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
+..++.+.|.++ ||.+.++..+ .. ..++|+++.. +++|++++++.|+++
T Consensus 311 -------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 382 (393)
T 1mdo_A 311 -------TRDALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQI 382 (393)
T ss_dssp -------CHHHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHhC-CCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 788899998875 9999887644 11 2379999985 999999999999999
Q ss_pred HhhhC
Q 018665 343 LLTLR 347 (352)
Q Consensus 343 ~~~~~ 347 (352)
++.+.
T Consensus 383 ~~~~~ 387 (393)
T 1mdo_A 383 AGQGS 387 (393)
T ss_dssp HC---
T ss_pred HhcCC
Confidence 87654
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=228.36 Aligned_cols=280 Identities=14% Similarity=0.169 Sum_probs=206.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh----cCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~----~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ .+++++++|+++|+..++.+++++||+|+++.|+|.++...++. .|.+++.++.+
T Consensus 88 ~~la~~~g-------~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~------ 154 (414)
T 3ndn_A 88 ERLRLIEG-------APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD------ 154 (414)
T ss_dssp HHHHHHHT-------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT------
T ss_pred HHHHHHHC-------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC------
Confidence 77777764 46889999999999999999999999999999999998877654 99999999864
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
|+++|++++++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|++|+..... .++ ..+.++
T Consensus 155 -d~~~l~~ai~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~-g~~livDe~~~~~~~~----~~~-----~~g~di 220 (414)
T 3ndn_A 155 -DLSQWERALSVPTQAVFFETPSNPMQSLVD---IAAVTELAHAA-GAKVVLDNVFATPLLQ----QGF-----PLGVDV 220 (414)
T ss_dssp -CHHHHHHHTSSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHC----CCG-----GGTCSE
T ss_pred -CHHHHHHhcCCCCeEEEEECCCCCCCcccc---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch-----hcCCCe
Confidence 899999999999999999999999999999 99999999999 9999999999743211 111 134569
Q ss_pred EEecccccccccc-ceeEEEEcChhHHH-HHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTG-WRLGYIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 177 ~~~s~sK~~g~~g-~~~g~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
++.|+||.+|.+| +++|+++++++.+. .+.......+...++....++...++ .+....++..++++.+.+
T Consensus 221 v~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~-------~l~~r~~~~~~~a~~l~~ 293 (414)
T 3ndn_A 221 VVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE-------TLAIRVQHSNASAQRIAE 293 (414)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG-------GHHHHHHHHHHHHHHHHH
T ss_pred EeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 9999999998667 78999999998776 56655444555566666555444443 345556667778888888
Q ss_pred HhcccCCceec-CCC----------------CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-
Q 018665 255 SFGELEGVKMS-EPQ----------------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG- 316 (352)
Q Consensus 255 ~l~~~~g~~~~-~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~- 316 (352)
.|++.|++..+ .|. .|.++++.+++..... .+...++.+.|. ..++.+..|+.+.
T Consensus 294 ~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~------~~~~~~~~~~l~-~~~~~~s~G~~~sl 366 (414)
T 3ndn_A 294 FLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVA------KQRAFEVLDKMR-LIDISNNLGDAKSL 366 (414)
T ss_dssp HHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGH------HHHHHHHHHHCS-SSEECSCCSCSSCE
T ss_pred HHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcccc------HHHHHHHHHhCc-cceEcCCCCCCCce
Confidence 98887776433 221 4667888886420000 013556666655 3467777776432
Q ss_pred ----------------------CCCeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 317 ----------------------DDTCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 317 ----------------------~~~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
.++++|||++. |+.+.+++.|++++
T Consensus 367 ~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~al 413 (414)
T 3ndn_A 367 VTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDRAL 413 (414)
T ss_dssp EECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred eeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 24689999998 34555555665554
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=231.43 Aligned_cols=279 Identities=10% Similarity=0.117 Sum_probs=210.8
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc------CCCCEE-EecCCCCCChHHHH----Hhc--CCeEEEe
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC------SPGDEV-IIPAPFWVSYPEMA----RIA--DATPVIL 87 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~------~~~~~v-l~~~~~~~~~~~~~----~~~--g~~v~~i 87 (352)
+.++++++ .++++|++++|+++++..++.++. ++||++ +++.+.|.++...+ +.. |.+++.+
T Consensus 78 ~~la~~~g-----~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 152 (416)
T 1qz9_A 78 NRLATLIG-----ARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLV 152 (416)
T ss_dssp HHHHTTTT-----CCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHcC-----CCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEe
Confidence 66666664 556899999999999998888876 788875 45556776555443 223 9999888
Q ss_pred cccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccccc
Q 018665 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 167 (352)
Q Consensus 88 ~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~ 167 (352)
+. +++|++++++++++|++++|+||||.+.| +++|.++|+++ |+++|+|++|+. +.....+..
T Consensus 153 ~~---------~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~----g~~~~~~~~ 215 (416)
T 1qz9_A 153 DS---------PEELPQAIDQDTAVVMLTHVNYKTGYMHD---MQALTALSHEC-GALAIWDLAHSA----GAVPVDLHQ 215 (416)
T ss_dssp SS---------GGGHHHHCSTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHH-TCEEEEECTTTT----TTSCCCHHH
T ss_pred Cc---------HHHHHHHhCCCceEEEEeccccCcccccC---HHHHHHHHHHc-CCEEEEEccccc----cCcCCChhh
Confidence 75 67888888889999999999999999999 89999999999 999999999974 222222222
Q ss_pred CCCCCCceEEEecccccccccccee-EEEEcChhHHHHHHhhh-----------------------hccccCCChHHHHH
Q 018665 168 LPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQ-----------------------SQFTSGASSISQKA 223 (352)
Q Consensus 168 ~~~~~~~~i~~~s~sK~~g~~g~~~-g~l~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~ 223 (352)
.+.++++.|++|.++ +|.++ |++++++++++.+.... .....+++...+.+
T Consensus 216 ----~~~d~~~~s~~K~l~-~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 290 (416)
T 1qz9_A 216 ----AGADYAIGCTYKYLN-GGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAM 290 (416)
T ss_dssp ----HTCSEEEECSSSTTC-CCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHH
T ss_pred ----cCCCEEEecCcccCC-CCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHH
Confidence 134488999999985 67777 99999998876554321 11223567777777
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc-C--CceecCCC----CceEEEeecCCccCCcccCCCCCCChHH
Q 018665 224 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-E--GVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSES 296 (352)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~--g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
+.++++.. ..++++++.++++++++++.+.|+++ + |+.+..+. .+.++++.++ +..+
T Consensus 291 ~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 354 (416)
T 1qz9_A 291 VECGLDVF--AQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--------------EGYA 354 (416)
T ss_dssp HHHHHHHH--TTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------------THHH
T ss_pred HHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--------------CHHH
Confidence 77777641 12457788889999999999999885 6 88887653 3456788775 4668
Q ss_pred HHHHHHHccCEEeccCCCCCCCCeEEEEeec---CHHHHHHHHHHHHHHHhhhC
Q 018665 297 LCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 297 ~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~~ 347 (352)
+.+.|.++ ||.+.. ..++++|++++. +++++++++++|++++++..
T Consensus 355 l~~~l~~~-gi~~~~----~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 355 VIQALIDR-GVIGDY----REPRIMRFGFTPLYTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp HHHHHHTT-TEECEE----ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhC-CcEecc----CCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhccc
Confidence 88888865 898753 246899999972 99999999999999998754
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-29 Score=231.37 Aligned_cols=309 Identities=12% Similarity=0.074 Sum_probs=207.8
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc-----C---CCCEEEecCCCCCChHHHHHhcCC---------
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC-----S---PGDEVIIPAPFWVSYPEMARIADA--------- 82 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-----~---~~~~vl~~~~~~~~~~~~~~~~g~--------- 82 (352)
..+++++. ..+ ...+ |++++|+++|++.+++.+. . ++++|++.+|+|+++.......+.
T Consensus 94 ~~la~~l~~~~~--~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 170 (452)
T 3n5m_A 94 IKLAEKLNEWLG--GEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYE 170 (452)
T ss_dssp HHHHHHHHHHHT--SCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTC
T ss_pred HHHHHHHHHhCC--CCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccC
Confidence 55555555 333 2334 9999999999999999876 4 678999999999987755544322
Q ss_pred ----eEEEecccCCCCcc-cC---------HHHHHhhcc----CCeeEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCC
Q 018665 83 ----TPVILPTRISENFL-LD---------PKVLESKLT----EKSRLLILCSP-SNPTGSVY-PKNLLDEIARIVAKHP 142 (352)
Q Consensus 83 ----~v~~i~~~~~~~~~-~d---------~~~l~~~l~----~~~~~i~i~~p-~nptG~~~-~~~~l~~l~~~~~~~~ 142 (352)
.+..++.+...... -| ++.|+++++ +++++++++.+ +| +|... +.+++++|.++|++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~- 248 (452)
T 3n5m_A 171 PFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKH- 248 (452)
T ss_dssp CCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHH-
T ss_pred CCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHc-
Confidence 23334432111100 01 889999887 56778888888 89 99766 788899999999999
Q ss_pred CEEEEecccccccccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHh------hhhccccC
Q 018665 143 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK------IQSQFTSG 215 (352)
Q Consensus 143 ~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~------~~~~~~~~ 215 (352)
|+++|+||+|.++.+.|.. ....... ....+.++||.++ +| +|+|++++++++++.+.. .....+++
T Consensus 249 ~~llI~DEv~~g~g~~g~~-~~~~~~~----~~~di~t~sK~l~-~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~ 322 (452)
T 3n5m_A 249 GALLISDEVICGFGRTGKA-FGFMNYD----VKPDIITMAKGIT-SAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFG 322 (452)
T ss_dssp TCEEEEECTTTTTTTTSSS-SGGGGTT----CCCSEEEECGGGG-TTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSST
T ss_pred CCEEEEecchhCCCccccc-chhhhcC----CCCCEEeeccccc-CCCcceEEEEECHHHHHHHhhccCCCCccccCCCC
Confidence 9999999999988766642 1222111 1122457899998 59 999999999999888743 12345677
Q ss_pred CChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChH
Q 018665 216 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 295 (352)
Q Consensus 216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (352)
.|+++++++.++++.... ++..+++.+..+..++.+.+.+++++.+..+.+.+. ++++.+........ .+. .....
T Consensus 323 ~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~-~~~-~~~~~ 398 (452)
T 3n5m_A 323 GNPAACALALKNLEIIEN-ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGL-LVGIELVNDKETKE-PID-NDKIA 398 (452)
T ss_dssp TCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSS-CEEEEEEEETTTTE-ECC-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEE-EEEEEEecCCcccC-CCC-HHHHH
Confidence 899999999999874211 233444444444455555555555555655554444 45566532110000 000 00135
Q ss_pred HHHHHHHHccCEEeccCCCCC--CCCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 296 SLCRYLLDKAQVALVPGDAFG--DDTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 296 ~~~~~l~~~~gi~i~~g~~~~--~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
++.+.|+++ ||.+.|+..+. .++++||+++. +++++++++++|++++++
T Consensus 399 ~~~~~l~~~-Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 399 SVVNACKEK-GLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp HHHHHHHHT-TEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHC-CcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 688888876 99999987543 25799998765 999999999999999875
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=236.60 Aligned_cols=287 Identities=11% Similarity=0.036 Sum_probs=217.4
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC---EEEecCCCCCChHH----HHHhcCCeEE-----Eec
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD---EVIIPAPFWVSYPE----MARIADATPV-----ILP 88 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~---~vl~~~~~~~~~~~----~~~~~g~~v~-----~i~ 88 (352)
+.++++++ .++++|++++|++++++.++.++.++++ +|+++.|+|++... .++..|.++. ..+
T Consensus 118 ~~la~~~g-----~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~ 192 (465)
T 3e9k_A 118 GLMKDIVG-----ANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKP 192 (465)
T ss_dssp GGGHHHHT-----CCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECC
T ss_pred HHHHHHcC-----CCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEec
Confidence 78888876 6678999999999999999999976554 59999999988554 6667898753 233
Q ss_pred ccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 89 TRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 89 ~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
.+ +++.+|+++++++++ +++++|++++|+||||.+.| +++|.++|+++ |+++|+|++|+. +..+..+
T Consensus 193 ~~--~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~-g~~vi~D~a~~~----g~~~~~~ 262 (465)
T 3e9k_A 193 RE--GEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFN---IPAITKAGQAK-GCYVGFDLAHAV----GNVELYL 262 (465)
T ss_dssp CT--TCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHT-TCEEEEECTTTT----TTSCCCH
T ss_pred CC--CCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeec---HHHHHHHHHHc-CCEEEEEhhhhc----CCcCCch
Confidence 33 456689999999996 68899999999999999999 89999999999 999999999875 2222222
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh-------------------------hccccCCChHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------------------------SQFTSGASSIS 220 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~ 220 (352)
.. .+.+++++|++|.++.+..++|++++++++++.+.... .....+++...
T Consensus 263 ~~----~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 338 (465)
T 3e9k_A 263 HD----WGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILL 338 (465)
T ss_dssp HH----HTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHH
T ss_pred hh----cCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHH
Confidence 22 23458999999999313336899999888766543110 01112577777
Q ss_pred HHHHHHHhcccCCChH-HHHHHHHHHHHHHHHHHHHhccc----------CCceecCCC----CceEEEeecCCccCCcc
Q 018665 221 QKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGEL----------EGVKMSEPQ----GAFYLFIDFSTYYGSEA 285 (352)
Q Consensus 221 ~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~----------~g~~~~~~~----~g~~~~~~~~~~~~~~~ 285 (352)
..++.++++. ..+ .+++++++.+++++++.+.|+++ +|++++.+. .|.++++.++.
T Consensus 339 ~~a~~aal~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~------ 409 (465)
T 3e9k_A 339 VCSLHASLEI---FKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV------ 409 (465)
T ss_dssp HHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC------
T ss_pred HHHHHHHHHH---HHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC------
Confidence 7777777765 122 37888899999999999999875 688888765 25667777762
Q ss_pred cCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEe-ec--CHHHHHHHHHHHHHHHhhhC
Q 018665 286 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~-~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
+..++.+.|.++ ||.+.. ..++++|+++ +. +++|++++++.|++++++..
T Consensus 410 -------~~~~l~~~L~~~-Gi~v~~----~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~ 462 (465)
T 3e9k_A 410 -------PNKDVFQELEKR-GVVCDK----RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAE 462 (465)
T ss_dssp -------TTCCHHHHHHTT-TEECEE----ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred -------CHHHHHHHHHHC-CEEEec----CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhcc
Confidence 566788888866 998863 3478999998 44 89999999999999997653
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=233.53 Aligned_cols=293 Identities=13% Similarity=0.031 Sum_probs=211.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC-------CC-CEEEecCCCCCChHHHHHhc------------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA------------ 80 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-------~~-~~vl~~~~~~~~~~~~~~~~------------ 80 (352)
+.+++++ + ...++|++++|+++|++.+++.+.. ++ +.|++.++.|++........
T Consensus 125 e~la~~~---~--~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 199 (457)
T 3tfu_A 125 KLLVDIT---P--AGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWT 199 (457)
T ss_dssp HHHHHHS---S--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC--------
T ss_pred HHHHHhC---C--CCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCccccccccc
Confidence 5555554 2 3557999999999999999988753 34 58999999998866544433
Q ss_pred --CCeEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcC-CCCCcccCC-CHHHHHHHHHHHHhCCCEEEEeccccc
Q 018665 81 --DATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCS-PSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYE 153 (352)
Q Consensus 81 --g~~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~ 153 (352)
...+..++.+.......|++.|+++++ +++++|+++. ++|++|... +.+++++|.++|+++ |+++|+||++.
T Consensus 200 ~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~ 278 (457)
T 3tfu_A 200 DVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRY-EVLLIFDEIAT 278 (457)
T ss_dssp --CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHH-TCEEEEECTTT
T ss_pred CCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEcCcc
Confidence 123444454432222248899999887 6788888888 899999776 677899999999999 99999999999
Q ss_pred ccccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh-----hhccccCCChHHHHHHHHH
Q 018665 154 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAA 227 (352)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 227 (352)
++.++|.. ..+..... .++ +.|+||.++ +| +|+|++++++++++.+... ....+++.|++.++++.++
T Consensus 279 g~gr~G~~-~a~~~~~~-~pd---iit~sK~l~-gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aa 352 (457)
T 3tfu_A 279 GFGRTGAL-FAADHAGV-SPD---IMCVGKALT-GGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVAS 352 (457)
T ss_dssp TTTTTSSS-STHHHHTC-CCS---EEEECGGGG-TTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHH
T ss_pred CCccccch-hHhHhcCC-Cce---EEEEChhhh-CCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHH
Confidence 88766542 12121111 122 338999997 56 6999999999999988521 3345678899999999998
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
++.... +++.++++++.+++.+.|+++ +++..+.+. |.++++++++.. +..++.+.|+++
T Consensus 353 L~~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~~~i~l~~~~-----------~~~~~~~~l~~~ 415 (457)
T 3tfu_A 353 VELLLG-----QDWRTRITELAAGLTAGLDTARALPAVTDVRVC-GAIGVIECDRPV-----------DLAVATPAALDR 415 (457)
T ss_dssp HHHHHT-----SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEEC-SSCEEEEESSCC-----------CHHHHHHHHHHT
T ss_pred HHHHhh-----hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecC-CeEEEEEECCcc-----------cHHHHHHHHHHC
Confidence 874111 234555666666777766654 455444434 556777876532 578899999977
Q ss_pred cCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 305 AQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 305 ~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
||.+.|. .+++|++++. +++++++++++|++++++++.
T Consensus 416 -Gv~v~~~-----~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~~ 455 (457)
T 3tfu_A 416 -GVWLRPF-----RNLVYAMPPYICTPAEITQITSAMVEVARLVGS 455 (457)
T ss_dssp -TEECCCB-----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred -CeEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999874 4789999765 999999999999999988654
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-29 Score=228.59 Aligned_cols=287 Identities=15% Similarity=0.124 Sum_probs=201.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc---------CCC-CEEEecCCCCCChHH-HHHhcC--------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC---------SPG-DEVIIPAPFWVSYPE-MARIAD-------- 81 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---------~~~-~~vl~~~~~~~~~~~-~~~~~g-------- 81 (352)
+.+++++ ..+++++++|+++|+..+++.+. .+| ++|++++|+|++... .+...|
T Consensus 114 ~~la~~~-------g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 186 (433)
T 1z7d_A 114 RYLTNLL-------GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 186 (433)
T ss_dssp HHHHHHH-------TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHhhc-------CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccC
Confidence 6666655 25899999999999999998753 356 899999999987653 333333
Q ss_pred ----CeEEEecccCCCCcccCHHHHHhhc-cCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 82 ----ATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 82 ----~~v~~i~~~~~~~~~~d~~~l~~~l-~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
..+..++. .|++.|++++ ++++++|+++..++++|.. +|.+.+++|.++|+++ |+++|+||+|.++
T Consensus 187 ~p~~~~v~~~~~-------~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~ 258 (433)
T 1z7d_A 187 GPFAPQFSKVPY-------DDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY-NVLFVADEVQTGL 258 (433)
T ss_dssp -----CEEEECT-------TCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTT
T ss_pred CCCCCCeEEeCC-------CCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc-CCEEEEecCccCC
Confidence 24444443 2899999999 5677777766667789975 6788999999999999 9999999999987
Q ss_pred ccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCC
Q 018665 156 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAG 234 (352)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 234 (352)
.+.+.. ..+..... ..+ +.|+||.+| +| +|+|++++++++++.+.......+++.|++.++++.++++..
T Consensus 259 g~~g~~-~~~~~~~~-~~d---i~t~sK~l~-~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~--- 329 (433)
T 1z7d_A 259 GRTGKL-LCVHHYNV-KPD---VILLGKALS-GGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVL--- 329 (433)
T ss_dssp TTTSSS-SGGGGGTC-CCS---EEEECGGGG-TTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHH---
T ss_pred CcCCcc-hhhHhcCC-CCC---EEEECcccc-CCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHH---
Confidence 665531 11111111 122 338999999 89 899999999998877655444566788999999888888741
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccc----CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec
Q 018665 235 GEVVSKMVKAFRERRDFLVKSFGEL----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 310 (352)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~ 310 (352)
.+ +++.++++++.+++.+.|+++ +.+.... ..|.++++++++.. .+..++.+.|.++ ||.+.
T Consensus 330 ~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~~g~~~~i~~~~~~----------~~~~~~~~~l~~~-Gv~v~ 395 (433)
T 1z7d_A 330 IN--EKLCENAEKLGGPFLENLKRELKDSKIVRDVR-GKGLLCAIEFKNEL----------VNVLDICLKLKEN-GLITR 395 (433)
T ss_dssp HH--TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE-EETTEEEEEECTTT----------CCHHHHHHHHHHT-TEECC
T ss_pred Hh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-eeeeEEEEEEccCh----------hHHHHHHHHHHHC-CeEEe
Confidence 11 245566667777777777653 3222233 34566788876420 1577899999876 99998
Q ss_pred cCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCCC
Q 018665 311 PGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 311 ~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
|+ .++++|++++. +++++++++++|+++++++..+
T Consensus 396 ~~----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 432 (433)
T 1z7d_A 396 DV----HDKTIRLTPPLCITKEQLDECTEIIVKTVKFFDER 432 (433)
T ss_dssp EE----TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred cC----CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 85 36799998875 9999999999999999877543
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=224.24 Aligned_cols=280 Identities=13% Similarity=0.111 Sum_probs=210.2
Q ss_pred ChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcCCeEE
Q 018665 10 TLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPV 85 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g~~v~ 85 (352)
..+++ +.++++++ .+++++++|+++|++.++.+++++||+|+++.++|.++...+ +..|.++.
T Consensus 68 ~~~l~------~~la~~~g-------~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~ 134 (392)
T 3qhx_A 68 RTALE------AALAAVED-------AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYT 134 (392)
T ss_dssp HHHHH------HHHHHHTT-------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEE
T ss_pred HHHHH------HHHHHHhC-------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEE
Confidence 44566 88888874 447999999999999999999999999999999999887766 67899999
Q ss_pred EecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 86 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
.++++ |++++++++++++++|++++|+||+|.+.| +++|+++|+++ |+++|+|++|+.... . .++
T Consensus 135 ~v~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~-g~~li~D~~~~~~~~-~---~~~ 199 (392)
T 3qhx_A 135 PVALA-------DLDAVRAAIRPTTRLIWVETPTNPLLSIAD---IAGIAQLGADS-SAKVLVDNTFASPAL-Q---QPL 199 (392)
T ss_dssp EECTT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECTTTCTTT-C---CGG
T ss_pred EeCCC-------CHHHHHHhhCCCCeEEEEECCCCCCcEEec---HHHHHHHHHHc-CCEEEEECCCccccc-C---ChH
Confidence 99863 899999999999999999999999999999 99999999999 999999999975311 1 111
Q ss_pred ccCCCCCCceEEEecccccccccc-ceeEEEEcC-hhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
..+.++++.|++|.+|.+| .++|+++.+ +++++.+......++..++++.+.++...++. +....+
T Consensus 200 -----~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-------l~~~~~ 267 (392)
T 3qhx_A 200 -----SLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT-------LVLRMQ 267 (392)
T ss_dssp -----GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHH
T ss_pred -----HhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-------HHHHHH
Confidence 1245599999999998666 789999987 58888888776666777888888887777764 334455
Q ss_pred HHHHHHHHHHHHhcccCCceec-CC----------------CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccC
Q 018665 244 AFRERRDFLVKSFGELEGVKMS-EP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 306 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~~g~~~~-~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 306 (352)
+..++.+.+.+.|++.|.+..+ .| ..|.++++.+++.. .....+.+.|. ..+
T Consensus 268 ~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~----------~~~~~~~~~l~-~~~ 336 (392)
T 3qhx_A 268 RHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR----------TAAEQLCAKTN-IFI 336 (392)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH----------HHHHHHHHHCS-SSE
T ss_pred HHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH----------HHHHHHHHhCC-Cce
Confidence 5667777788888877665433 11 12556788886521 14566666655 347
Q ss_pred EEeccCCCCC--------------------CCCeEEEEeecCHHHHHHHHHHHHHH
Q 018665 307 VALVPGDAFG--------------------DDTCIRISYAASLTTLQAAVERIKKG 342 (352)
Q Consensus 307 i~i~~g~~~~--------------------~~~~iRi~~~~~~~~l~~~~~~l~~~ 342 (352)
+.+..|+.+. .++.+|||++. ++.+..++.|.++
T Consensus 337 ~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~~~i~~l~~a 390 (392)
T 3qhx_A 337 LAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI--EDVADLLDDLKQA 390 (392)
T ss_dssp ECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS--SCHHHHHHHHHHH
T ss_pred ECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc--CCHHHHHHHHHHH
Confidence 7776665432 24679999998 2334444444443
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-28 Score=222.23 Aligned_cols=282 Identities=16% Similarity=0.159 Sum_probs=202.6
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcCC
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADA 82 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g~ 82 (352)
.+...+++ +.++++++ .++.++++++++++..++.+++++||+|+++.+.|.++...+ +..|.
T Consensus 64 ~~~~~~l~------~~la~~~g-------~~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~ 130 (398)
T 1gc0_A 64 NPTLNLLE------ARMASLEG-------GEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV 130 (398)
T ss_dssp CHHHHHHH------HHHHHHHT-------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTC
T ss_pred ChHHHHHH------HHHHHHhC-------CCcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCC
Confidence 34455667 89999885 236666777789999999999999999999999999988776 67899
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++.. |++++++.+++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|++|+.+.+.
T Consensus 131 ~~~~~~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~~~~~~~~~---- 195 (398)
T 1gc0_A 131 KLRHVDMA-------DLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKH-GATVVVDNTYCTPYLQ---- 195 (398)
T ss_dssp EEEEECTT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGG-TCEEEEECTTTHHHHC----
T ss_pred EEEEECCC-------CHHHHHHhcCCCCeEEEEECCCCCCccccc---HHHHHHHHHHc-CCEEEEECCCcccccC----
Confidence 99998752 899999999989999999999999999999 99999999999 9999999999865432
Q ss_pred cccccCCCCCCceEEEecccccccccccee-EEEEcChhHHH-HHHhhhhc-cccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~-g~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
.++ ..+.++++.|++|.+|.+|.|+ |+++++++.++ .+...... ++.+.+++.+.++.+.++. +.
T Consensus 196 ~~~-----~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~ 263 (398)
T 1gc0_A 196 RPL-----ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-------LN 263 (398)
T ss_dssp CGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-------HH
T ss_pred Cch-----hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch-------HH
Confidence 111 1345699999999998788887 99999988776 56555444 5566888888877777753 23
Q ss_pred HHHHHHHHHHHHHHHHhcccCCc--------------eecCC---CCceEEEeecCCccCCcccCCCCCCChHHHHHHHH
Q 018665 240 KMVKAFRERRDFLVKSFGELEGV--------------KMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 302 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~--------------~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 302 (352)
...++..++.+.+.+.|++++++ .+..+ ..+.++.+++++ ......+. +
T Consensus 264 ~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------------~~~~~~~~-l 329 (398)
T 1gc0_A 264 LRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-------------GIGAGRRF-M 329 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-------------HHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-------------CHHHHHHH-H
Confidence 34445555666666666654332 22221 134445556642 22334444 4
Q ss_pred HccCEEecc---CCC------C----------------C-CCCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 303 DKAQVALVP---GDA------F----------------G-DDTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 303 ~~~gi~i~~---g~~------~----------------~-~~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
++.++.+.. |+. + + .++++|+|++. ++++++.+.+.|+++
T Consensus 330 ~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 330 NALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 445666554 321 0 0 14799999998 667788887777654
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-29 Score=231.34 Aligned_cols=316 Identities=14% Similarity=0.116 Sum_probs=218.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC----CCCE---EEecCCCCCChHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS----PGDE---VIIPAPFWVSYPE 75 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~~~~---vl~~~~~~~~~~~ 75 (352)
.|+++.+..+++ +.++++++ .+++++|+|+++|+..++.++.+ +||. |+++.+.|..+..
T Consensus 71 ~y~~~~~~~~l~------~~la~~~~-------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~ 137 (467)
T 1ax4_A 71 AYAGSRNYYDLK------DKAKELFN-------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAA 137 (467)
T ss_dssp CSSSCHHHHHHH------HHHHHHHC-------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHH
T ss_pred ccccCccHHHHH------HHHHHHcC-------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhH
Confidence 477777888899 99999984 47999999999999999999887 8998 8988666666677
Q ss_pred HHHhcCCeEEEecccC----C----CCcccCHHHHHhhccC----CeeEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCC
Q 018665 76 MARIADATPVILPTRI----S----ENFLLDPKVLESKLTE----KSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHP 142 (352)
Q Consensus 76 ~~~~~g~~v~~i~~~~----~----~~~~~d~~~l~~~l~~----~~~~i~i~~p~npt-G~~~~~~~l~~l~~~~~~~~ 142 (352)
.+...|.+++.++... . .++.+|+++|++++++ ++++|++++|+||+ |.+++.+++++|+++|++|
T Consensus 138 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~- 216 (467)
T 1ax4_A 138 HVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH- 216 (467)
T ss_dssp HHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH-
T ss_pred HHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHc-
Confidence 8888999988776532 1 1345899999999973 68999999999999 8999999999999999999
Q ss_pred CEEEEecccccc--c--------ccCCCCccccccCCCC--CCceEEEeccccccccccceeEEEEcC-h-hHHHHHHhh
Q 018665 143 RLLVLSDEIYEH--I--------IYAPATHTSFASLPGM--WERTLTVNGFSKAFAMTGWRLGYIAGP-K-HFVAACNKI 208 (352)
Q Consensus 143 ~~~livD~~~~~--~--------~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~g~~g~~~g~l~~~-~-~~~~~~~~~ 208 (352)
|+++|+|+++.. . .+.+. ++..+... ....+++.|+||.+|++ . .|+++.+ + ++++.+...
T Consensus 217 gi~li~De~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~s~sK~~g~~-~-Gg~~~~~d~~~l~~~~~~~ 291 (467)
T 1ax4_A 217 GIFVVMDSARFCENAYFIKARDPKYKNA---TIKEVIFDMYKYADALTMSAKKDPLLN-I-GGLVAIRDNEEIFTLARQR 291 (467)
T ss_dssp TCCEEEECTTHHHHHHHHHHHCGGGTTC---CHHHHHHHHGGGCSEEEEETTSTTCCS-S-CEEEEESSCHHHHHHHHHH
T ss_pred CCEEEEEchhhhhcchhccccccccCCC---chhhhhhhhccccceEEEeccccCCCC-c-ceEEEeCCHHHHHHHHHhh
Confidence 999999998653 1 12221 21111000 00125678999998754 1 2677777 6 788777654
Q ss_pred hhcc----cc-CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCC
Q 018665 209 QSQF----TS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS 283 (352)
Q Consensus 209 ~~~~----~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~ 283 (352)
...+ .. +.+.....++..+++... .++.++ +..++++.+.+.|++ +++.+..+.+++++|++.......
T Consensus 292 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~----~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~ 365 (467)
T 1ax4_A 292 CVPMEGFVTYGGLAGRDMAAMVQGLEEGT-EEEYLH----YRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLVPQ 365 (467)
T ss_dssp HHHHTCSTTTTTCCHHHHHHHHHHHHHTT-CHHHHH----HHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTCTT
T ss_pred ccccccccccCCccchHHHHHHHHHHHhh-hhhHHH----HHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhccc
Confidence 3211 11 223333333333454311 112332 233566778888877 488877788899999883221000
Q ss_pred -cccCCCCCCChHHHHHHHHHccCEEecc-CCCC-------C-----CCCeEEEEee---cCHHHHHHHHHHHHHHHhhh
Q 018665 284 -EAEGFGKIENSESLCRYLLDKAQVALVP-GDAF-------G-----DDTCIRISYA---ASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 284 -~~~~~~~~~~~~~~~~~l~~~~gi~i~~-g~~~-------~-----~~~~iRi~~~---~~~~~l~~~~~~l~~~~~~~ 346 (352)
...+ .+..++.+.|+++.||.+.| |..+ + ..+++|++++ .+++++++++++|++++++.
T Consensus 366 ~~~~~----~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 366 IPGDQ----FPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp SCGGG----CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred cccCC----CCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence 0000 14678999984455999998 5321 1 1379999998 38999999999999998775
Q ss_pred C
Q 018665 347 R 347 (352)
Q Consensus 347 ~ 347 (352)
.
T Consensus 442 ~ 442 (467)
T 1ax4_A 442 A 442 (467)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-28 Score=224.22 Aligned_cols=278 Identities=13% Similarity=0.130 Sum_probs=205.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ . . +.+++++|+++++.++.+++++||+|+++.+.|.++... ++..|.+++.++.+
T Consensus 121 ~~lA~l~g-----~-~-~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~------ 187 (445)
T 1qgn_A 121 EKISALEG-----A-E-STLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA------ 187 (445)
T ss_dssp HHHHHHHT-----C-S-EEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS------
T ss_pred HHHHHHhC-----C-C-cEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC------
Confidence 99999885 2 3 445555666999999999999999999999999987764 56789999999853
Q ss_pred cCHHHHHhhccCCe-eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 97 LDPKVLESKLTEKS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 97 ~d~~~l~~~l~~~~-~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
|+++|++++++++ ++|++++|+||+|.+.| +++|+++|+++ |+++|+|++|+.... ..++ ..+.+
T Consensus 188 -d~~~l~~ai~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~-g~~livD~a~~~~~~----~~~~-----~~g~D 253 (445)
T 1qgn_A 188 -DVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEK-GALVCIDGTFATPLN----QKAL-----ALGAD 253 (445)
T ss_dssp -CHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTT----CCTT-----TTTCS
T ss_pred -CHHHHHHHhccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCccccc----CCcc-----ccCCE
Confidence 8999999998888 99999999999999999 89999999999 999999999975321 1111 13456
Q ss_pred EEEecccccccccc-ceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 176 i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
+++.|++|.+|..| .++|++++++++++.+......++..++++....+.+.++. +....++..++++.+.+
T Consensus 254 iv~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~~l~~ 326 (445)
T 1qgn_A 254 LVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTALRMAE 326 (445)
T ss_dssp EEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHH
T ss_pred EEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHH
Confidence 99999999997443 36999999999988887665555555677665555555543 34444556667788888
Q ss_pred HhcccCCc-eecCC----------------CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-
Q 018665 255 SFGELEGV-KMSEP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG- 316 (352)
Q Consensus 255 ~l~~~~g~-~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~- 316 (352)
.|++.|++ .+..| ..|.++++.+++.. .....+.+.|. ..++.+..|+.+.
T Consensus 327 ~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~----------~~~~~~l~~l~-~~~i~~s~G~~~sl 395 (445)
T 1qgn_A 327 ILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL----------LTTAKFVDALK-IPYIAPSFGGCESI 395 (445)
T ss_dssp HHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH----------HHHHHHHHHCS-SSEECSCCCSSSCE
T ss_pred HHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH----------HHHHHHHHhCC-CceEeccCCCCcee
Confidence 89888776 34333 13556777776420 02445555433 2367777766542
Q ss_pred ----------------------CCCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 317 ----------------------DDTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 317 ----------------------~~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
.++.+|+|++. ||++++++.|+++++.
T Consensus 396 ~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~--Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 396 VDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQALDS 444 (445)
T ss_dssp EECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred eecccccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence 14789999994 5799999999988864
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=231.89 Aligned_cols=315 Identities=13% Similarity=0.129 Sum_probs=201.1
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHHHHh-cCC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARI-ADA 82 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~~~-~g~ 82 (352)
+++...+++ +.+++++. ..++|++++|++++++.+++.+.. ++++|+++.|+|+++...+.. .|.
T Consensus 93 ~~~~~~~l~------~~la~~~~------~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~ 160 (434)
T 3l44_A 93 PTALEVKFA------KMLKEAMP------ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGS 160 (434)
T ss_dssp CCHHHHHHH------HHHHHHCT------TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC---
T ss_pred CCHHHHHHH------HHHHHhCC------CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCC
Confidence 344444555 66666642 578999999999999999988754 678999999999876543332 222
Q ss_pred eEEEecccCCCCc--------c----cCHHHHHhhcc---CCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEE
Q 018665 83 TPVILPTRISENF--------L----LDPKVLESKLT---EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLV 146 (352)
Q Consensus 83 ~v~~i~~~~~~~~--------~----~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~l 146 (352)
....+..+...+. . .|++.|+++++ +++++++++.++|++|... +.+++++|.++|++| |+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~ill 239 (434)
T 3l44_A 161 GPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEA-GALV 239 (434)
T ss_dssp ----CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTT-TCEE
T ss_pred cccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHc-CCEE
Confidence 1111111110100 0 18899999886 3556666665667777665 788999999999999 9999
Q ss_pred EecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh---hhccccCCChHHHHH
Q 018665 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKA 223 (352)
Q Consensus 147 ivD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 223 (352)
|+||+|.++ ..+.. ......... ..+.++||.+| +|+|+|++++++++++.+... ....+++.|++.+.+
T Consensus 240 I~DEv~~g~-~~g~~-~~~~~~~~~----~di~t~sK~~~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aa 312 (434)
T 3l44_A 240 IYDEVITAF-RFMYG-GAQDLLGVT----PDLTALGKVIG-GGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMAS 312 (434)
T ss_dssp EEECTTTTT-TSSSS-CHHHHHTCC----CSEEEEEGGGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHH
T ss_pred EEeccccce-ecccc-HHHHHcCCC----CCeeehhhhhc-CCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHH
Confidence 999999987 54432 111111111 11568999998 899999999999998877652 234567899999999
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCC--CCCCChHHHHHHH
Q 018665 224 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF--GKIENSESLCRYL 301 (352)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 301 (352)
+.++++.... ++..++..+..+..++.+.+.+...+.+.... ..|.++++.+.+......... .......++.+.|
T Consensus 313 a~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 390 (434)
T 3l44_A 313 GIACLEVLQQ-EGLYEKLDELGATLEKGILEQAAKHNIDITLN-RLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLM 390 (434)
T ss_dssp HHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE-EETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE-eeccEEEEEEecCcccchhhccccCHHHHHHHHHHH
Confidence 9998875221 23333333333333334433333332333333 345556666532110000000 0000236788888
Q ss_pred HHccCEEeccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 302 LDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 302 ~~~~gi~i~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
.++ ||.+.+++ .+.+|+++..+++++++++++|++++++++
T Consensus 391 ~~~-Gv~v~~~~----~~~~rl~~~~t~e~i~~~l~~l~~~l~~~~ 431 (434)
T 3l44_A 391 LQE-GVNLAPSK----YEAWFLTTEHTKEDIEYTIEAVGRAFAALA 431 (434)
T ss_dssp HHT-TEECCSST----TCCEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHC-CeEEeecC----CCcEEEecccCHHHHHHHHHHHHHHHHHHH
Confidence 876 99998874 457899877799999999999999998764
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=227.48 Aligned_cols=317 Identities=11% Similarity=0.040 Sum_probs=207.0
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC----C----CCEEEecCCCCCChH
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS----P----GDEVIIPAPFWVSYP 74 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~----~~~vl~~~~~~~~~~ 74 (352)
|....+..+.+ +.+++++. ..+ ...++|++++|+++|++.+++.+.. + +++|++++|+|+++.
T Consensus 79 ~~~~~~~~~~~------~~la~~l~~~~~--~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~ 150 (448)
T 3dod_A 79 STLLGMTNVPA------TQLAETLIDISP--KKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDT 150 (448)
T ss_dssp CCCSSSEEHHH------HHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-------
T ss_pred ccccccCCHHH------HHHHHHHHHhCC--CCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCcc
Confidence 33344555666 77777776 443 3458999999999999999998754 3 489999999998766
Q ss_pred HHHHhcC-------------CeEEEecccCCCCcc-----------cCHHHHHhhcc---CCeeEEEEcCCC-CCcc-cC
Q 018665 75 EMARIAD-------------ATPVILPTRISENFL-----------LDPKVLESKLT---EKSRLLILCSPS-NPTG-SV 125 (352)
Q Consensus 75 ~~~~~~g-------------~~v~~i~~~~~~~~~-----------~d~~~l~~~l~---~~~~~i~i~~p~-nptG-~~ 125 (352)
......+ ..+..++.+ ..+. .|++.|+++++ +++++|+++.++ |++| .+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~ 228 (448)
T 3dod_A 151 IGAVSVGSIELFHHVYGPLMFESYKAPIP--YVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIV 228 (448)
T ss_dssp ----------------------CEEECCC--CCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEE
T ss_pred HHHHHhcCCccccccccCCCCCceEeCCC--ccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeec
Confidence 4333221 223344433 2111 24788998886 456677777666 8887 55
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHH
Q 018665 126 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAA 204 (352)
Q Consensus 126 ~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~ 204 (352)
++.+++++|.++|++| |+++|+||+|+++.+.|... ....... ...+.++||.++ +| +|+|++++++++++.
T Consensus 229 ~~~~~l~~l~~l~~~~-~~~lI~DEv~~g~g~~g~~~-a~~~~~~----~~di~t~sK~l~-~G~~~ig~v~~~~~~~~~ 301 (448)
T 3dod_A 229 MPEGYLAGVRELCTTY-DVLMIVDEVATGFGRTGKMF-ACEHENV----QPDLMAAGKGIT-GGYLPIAVTFATEDIYKA 301 (448)
T ss_dssp CCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-GGGGGTC----CCSEEEECGGGG-TTSSCCEEEEEEHHHHHT
T ss_pred CCHHHHHHHHHHHHHh-CCEEEEeccccCCCcccchh-hhhhcCC----CCCEEEeccccc-CCcCceEEEEECHHHHHH
Confidence 6788899999999999 99999999999887665422 2221111 122457899998 68 599999999999988
Q ss_pred HHh-------hhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeec
Q 018665 205 CNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 277 (352)
Q Consensus 205 ~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~ 277 (352)
+.. .....+++.+++.+.++.++++.... ++..+++.+..+..++.+.+ +.+++.+.... ..|.++++.+
T Consensus 302 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~-~~g~~~~~~~ 378 (448)
T 3dod_A 302 FYDDYENLKTFFHGHSYTGNQLGCAVALENLALFES-ENIVEQVAEKSKKLHFLLQD-LHALPHVGDIR-QLGFMCGAEL 378 (448)
T ss_dssp TCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEE-EETTEEEEEE
T ss_pred hhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEE-eeeEEEEEEE
Confidence 765 33456678899999999999874211 23344555555555555655 55554444433 3455677777
Q ss_pred CCccCCcccCCCCCC-ChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 278 STYYGSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 278 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
++....... +.... .+.++++.|+++ ||.+.|+ .+++|++++. +++++++++++|+++++++.
T Consensus 379 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~-Gv~~~~~-----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 379 VRSKETKEP-YPADRRIGYKVSLKMREL-GMLTRPL-----GDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp CSBTTTTBC-CCGGGCHHHHHHHHHHHT-TEECCEE-----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccccc-cchhhHHHHHHHHHHHHC-CcEEecc-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 653210000 00000 046788888876 9999886 3799997665 99999999999999998764
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=230.90 Aligned_cols=320 Identities=12% Similarity=0.067 Sum_probs=208.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHHHHh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~~~ 79 (352)
+|....+..+.+ ..+++.+. ..+.. ..++|++++|+++|++.+++.+.. .+++|++..++|+++...+..
T Consensus 95 ~~~~~~~~~~~~------~~la~~l~~~~~~~-~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~ 167 (451)
T 3oks_A 95 HTCFMVTPYEGY------VAVCEQLNRLTPVR-GDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMA 167 (451)
T ss_dssp CCTTTTSCCHHH------HHHHHHHHHHSSCC-SSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHH
T ss_pred cccCCccCCHHH------HHHHHHHHHhCCcC-CCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHH
Confidence 444445566666 77777776 33321 357999999999999999987653 457999999999987755443
Q ss_pred cC--------------CeEEEecccCCCC-----------cccCHHHHHhhc----cCCeeEEEEcCCC-CCccc-CCCH
Q 018665 80 AD--------------ATPVILPTRISEN-----------FLLDPKVLESKL----TEKSRLLILCSPS-NPTGS-VYPK 128 (352)
Q Consensus 80 ~g--------------~~v~~i~~~~~~~-----------~~~d~~~l~~~l----~~~~~~i~i~~p~-nptG~-~~~~ 128 (352)
.+ ..+..++.+.... ...+++.+++.+ ..+..+++++.|. +.+|. .++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~ 247 (451)
T 3oks_A 168 LTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPAD 247 (451)
T ss_dssp HCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCT
T ss_pred hcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCH
Confidence 21 1455565541100 001244444443 3344445555554 44454 4567
Q ss_pred HHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh
Q 018665 129 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 208 (352)
Q Consensus 129 ~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~ 208 (352)
+++++|.++|++| |+++|+||+|.++.+.|.. ........ ...+.|+||.++ +|+|+||+++++++++.+...
T Consensus 248 ~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~-~~~~~~~~----~pdi~t~sK~l~-~G~~iG~v~~~~~~~~~~~~~ 320 (451)
T 3oks_A 248 GFLPTLLDWCRKN-DVVFIADEVQTGFARTGAM-FACEHEGI----DPDLIVTAKGIA-GGLPLSAVTGRAEIMDSPHVS 320 (451)
T ss_dssp THHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGTC----CCSEEEECGGGG-TTSSCEEEEEEHHHHTCSCTT
T ss_pred HHHHHHHHHHHHc-CCEEEEEecccCCCccccc-hhhhhcCC----CCCeeeehhhhh-CCcceEEEEECHHHHhhhcCC
Confidence 7899999999999 9999999999988766542 22222211 122448999998 699999999999998888766
Q ss_pred hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCC
Q 018665 209 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF 288 (352)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 288 (352)
....+++.|++.+.++.++++.... ++..++..+..+..++.+.+.+++++.+..+.+. |.++++.+.+........
T Consensus 321 ~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~- 397 (451)
T 3oks_A 321 GLGGTYGGNPIACAAALATIETIES-EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGR-GAMIAMELVKAGTTEPDA- 397 (451)
T ss_dssp SBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEBSTTSCCBCH-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEe-eEEEEEEEecCccCCCCH-
Confidence 6667788999999999999874211 2333444444444444444444445555444433 455777663210000000
Q ss_pred CCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 289 GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 289 ~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
....++.+.|+++ ||.+.|++.+ .+++|++++. +++++++++++|++++++
T Consensus 398 ---~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 398 ---DLTKALCAGAHAA-GVIVLSCGTY--GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp ---HHHHHHHHHHHHT-TEECEEECTT--SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHhC-CcEEecCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 1356788888876 9999997644 4789998776 899999999999999864
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-29 Score=231.06 Aligned_cols=300 Identities=14% Similarity=0.112 Sum_probs=208.0
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHH-HHHhcCC--------
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPE-MARIADA-------- 82 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~-~~~~~g~-------- 82 (352)
+.+++.+. ..+ ...++|++++|++++++.+++++.. ++++|++.+|+|++... .+...|.
T Consensus 96 ~~l~~~la~~~~--~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~ 173 (449)
T 3a8u_X 96 FQLAEKITDLTP--GNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFG 173 (449)
T ss_dssp HHHHHHHHTTSS--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTC
T ss_pred HHHHHHHHHhCC--CCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccC
Confidence 56666665 222 4578999999999999999988753 67899999999987653 4544431
Q ss_pred ----eEEEecccCC--CCc-ccC--------HHHHHhhcc----CCeeEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCC
Q 018665 83 ----TPVILPTRIS--ENF-LLD--------PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHP 142 (352)
Q Consensus 83 ----~v~~i~~~~~--~~~-~~d--------~~~l~~~l~----~~~~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~ 142 (352)
.+..++.+.. .++ .+| +++|+++++ +++++++++..+|++|. ..|.+++++|.++|+++
T Consensus 174 ~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~- 252 (449)
T 3a8u_X 174 QPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQH- 252 (449)
T ss_dssp CCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH-
T ss_pred CCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHh-
Confidence 3445554321 110 135 899999886 35566555544678996 56788999999999999
Q ss_pred CEEEEecccccccccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh---------hhcc
Q 018665 143 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI---------QSQF 212 (352)
Q Consensus 143 ~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~---------~~~~ 212 (352)
|+++|+||+|.++.+.+.. ..+..... ..+ +.|+||.++ +| +|+|++++++++++.+... ....
T Consensus 253 ~~~li~Dev~~~~g~~g~~-~~~~~~~~-~~d---i~s~sK~l~-~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 326 (449)
T 3a8u_X 253 NILLVFDEVITGFGRTGSM-FGADSFGV-TPD---LMCIAKQVT-NGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGY 326 (449)
T ss_dssp TCEEEEECTTTTTTTTSSS-SHHHHHTC-CCS---EEEECGGGG-TTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCC
T ss_pred CCEEEEeccccCccccCcc-hhhhhcCC-CCC---EEEEccccc-CCCCceEEEEECHHHHHHhhccCcccccccccccC
Confidence 9999999999877655431 11111111 122 338899998 67 8999999999998888763 1234
Q ss_pred ccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceec--CCCCceEEEeecCCccCCcccCCCC
Q 018665 213 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGK 290 (352)
Q Consensus 213 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~ 290 (352)
+++.|++.+.++.++++.. .+ +++.++++++.+++.+.|++++.+..+ .+..|.++++++++..... .
T Consensus 327 t~~~~~~~~aa~~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~--~--- 396 (449)
T 3a8u_X 327 TYSAHPVACAAGLAALCLL---QK--ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDA--I--- 396 (449)
T ss_dssp TTTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBS--S---
T ss_pred CCcccHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccc--c---
Confidence 5678899998888888741 11 245667777788888888764222221 1345677888887531000 0
Q ss_pred CCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 291 IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 291 ~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+..++.+.|.++ ||.+.++ .+++||+++. +++++++++++|+++++++
T Consensus 397 -~~~~~~~~~l~~~-Gv~v~~~-----g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 397 -VRPFEAGMALWKA-GFYVRFG-----GDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp -HHHHHHHHHHHHH-TEECEEE-----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -ccHHHHHHHHHHC-CcEEecC-----CCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 0123688888876 9999986 2789999764 9999999999999998764
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=219.37 Aligned_cols=294 Identities=15% Similarity=0.141 Sum_probs=216.6
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh---cCCCCEEEecCCCCCChHHHHHhc
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
|.+.+...+++ +.++++++ . +++++++|+++++..++.++ .++||+|+++.|+|.++...++..
T Consensus 28 ~~~~~~~~~l~------~~la~~~~-----~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~ 94 (375)
T 2fnu_A 28 LTQGKRSLLFE------EALCEFLG-----V--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLES 94 (375)
T ss_dssp CSSSHHHHHHH------HHHHHHHT-----C--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHT
T ss_pred ccCChHHHHHH------HHHHHHhC-----C--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHHC
Confidence 44555566778 99999986 2 39999999999999999999 889999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++++.+. .+|+++|++++++++++|+++++ +|.+.| +++|.++|+++ |+++|+|++|+.+....
T Consensus 95 g~~~~~~~~~~~~--~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~~i~~l~~~~-~~~li~D~a~~~~~~~~- 164 (375)
T 2fnu_A 95 GYTPVFAGIKNDG--NIDELALEKLINERTKAIVSVDY---AGKSVE---VESVQKLCKKH-SLSFLSDSSHALGSEYQ- 164 (375)
T ss_dssp TCEEEECCBCTTS--SBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HHHHHHHHHHH-TCEEEEECTTCTTCEET-
T ss_pred CCEEEEeccCCCC--CCCHHHHHhhcCcCceEEEEeCC---cCCccC---HHHHHHHHHHc-CCEEEEECccccCCeEC-
Confidence 9999999987533 68999999999888998887776 999999 89999999999 99999999998643211
Q ss_pred CccccccCCCCCCceEEEeccc--cccccccceeEEEEc-C-hhHHHHHHhhhhcc--------------c--cCCChHH
Q 018665 161 THTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAG-P-KHFVAACNKIQSQF--------------T--SGASSIS 220 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~s--K~~g~~g~~~g~l~~-~-~~~~~~~~~~~~~~--------------~--~~~~~~~ 220 (352)
... +.. .+ .+.+.|+| |.+| +| +|++++ + +++++.+....... + .+.+.+.
T Consensus 165 -~~~---~~~-~~-~i~~~s~s~~K~~~-~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (375)
T 2fnu_A 165 -NKK---VGG-FA-LASVFSFHAIKPIT-TA--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQ 235 (375)
T ss_dssp -TEE---TTS-SS-SEEEEECCTTSSSC-CS--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHH
T ss_pred -Cee---ccc-cC-CeEEEeCCCCCCcc-cc--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHH
Confidence 011 111 12 37778887 9997 35 677776 3 67877776543211 1 1233333
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC-----CceEEEeecCCccCCcccCCCCCC-Ch
Q 018665 221 QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIE-NS 294 (352)
Q Consensus 221 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~ 294 (352)
..+.... .+++++..++.+++++++.+.|++++++.+..+. .++++++.++... . +.
T Consensus 236 ~a~~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 298 (375)
T 2fnu_A 236 SALGLSQ-------LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF----------FTCK 298 (375)
T ss_dssp HHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG----------GGGH
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc----------cchH
Confidence 3222222 2446677888899999999999998888876541 2344566665310 1 46
Q ss_pred HHHHHHHHHccCEEeccCCC-------CC-------C-------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 295 ESLCRYLLDKAQVALVPGDA-------FG-------D-------DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 295 ~~~~~~l~~~~gi~i~~g~~-------~~-------~-------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
.++.+.|.++ ||.+..+.. ++ . .+++||+++. +++|++++++.|++++++++
T Consensus 299 ~~l~~~L~~~-gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 299 KLILESLHKR-GILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESFK 373 (375)
T ss_dssp HHHHHHHHHT-TEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHC-CCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7888888765 999873211 10 1 1579999987 88999999999999988764
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=225.98 Aligned_cols=312 Identities=13% Similarity=0.114 Sum_probs=214.5
Q ss_pred CCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHHHHH
Q 018665 8 QGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~~~~ 78 (352)
.+..+.+ ..+++++. ..+ ...+.|++++|+++|+..+++.+.+ .+++|++.++.|+++.....
T Consensus 93 ~~~~~~~------~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~ 164 (476)
T 3i5t_A 93 YMATSPA------ARLAEKIATLTP--GDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTA 164 (476)
T ss_dssp TCBCHHH------HHHHHHHHTTSS--TTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHH
T ss_pred ccCCHHH------HHHHHHHHhcCC--CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhc
Confidence 4556677 88888887 443 3457999999999999999998752 35799999999998875554
Q ss_pred hcCC-------------eEEEecccCCCC-cccC--------HHHHHhhcc----CCeeEEEEcCCCCCccc-CCCHHHH
Q 018665 79 IADA-------------TPVILPTRISEN-FLLD--------PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLL 131 (352)
Q Consensus 79 ~~g~-------------~v~~i~~~~~~~-~~~d--------~~~l~~~l~----~~~~~i~i~~p~nptG~-~~~~~~l 131 (352)
..+. .+..++.+...+ +..| ++.|++.++ +++++|+++.+++++|. +++.+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L 244 (476)
T 3i5t_A 165 ACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYH 244 (476)
T ss_dssp HTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHH
T ss_pred cccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHH
Confidence 3322 223333221100 1112 778888875 46778888888888885 7788899
Q ss_pred HHHHHHHHhCCCEEEEecccccccccCCCCccccc-cCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh-
Q 018665 132 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI- 208 (352)
Q Consensus 132 ~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~- 208 (352)
++|.++|++| |+++|+||+|.++.+.|.. .... .... .++ +.+++|.+| +| +|+|++++++++++.+...
T Consensus 245 ~~l~~lc~~~-gillI~DEv~~g~gr~G~~-~~~~~~~~v-~pd---i~t~sK~l~-~G~~plg~v~~~~~i~~~~~~~~ 317 (476)
T 3i5t_A 245 ARFKAICEKH-DILYISDEVVTGFGRCGEW-FASEKVFGV-VPD---IITFAKGVT-SGYVPLGGLAISEAVLARISGEN 317 (476)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTTTTTTSSS-CHHHHTTCC-CCS---EEEECGGGG-TTSSCCEEEEECHHHHHTTSGGG
T ss_pred HHHHHHHHHc-CCEEEEEecccCCccccCc-eeeecccCC-Ccc---hhhhhhhhc-CCCcCeEEEEECHHHHHHHhcCC
Confidence 9999999999 9999999999998777642 2222 2211 122 346889998 78 9999999999999988653
Q ss_pred ------hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcc---cCCceecCCCCceEEEeecCC
Q 018665 209 ------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFST 279 (352)
Q Consensus 209 ------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~g~~~~~~~~g~~~~~~~~~ 279 (352)
....+++.|+++++++.++++.. +. +++.++++++.+++.+.|++ +|.+..+.+.+. ++++++.+
T Consensus 318 ~~~~~~~~~~t~~~np~a~aAa~aaL~~~----~~-~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~-~~~i~~~~ 391 (476)
T 3i5t_A 318 AKGSWFTNGYTYSNQPVACAAALANIELM----ER-EGIVDQAREMADYFAAALASLRDLPGVAETRSVGL-VGCVQCLL 391 (476)
T ss_dssp CTTCEECCCCTTTTCHHHHHHHHHHHHHH----HH-TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETT-EEEEEECC
T ss_pred cccccccccCCCCcCHHHHHHHHHHHHHH----Hh-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc-eeEEEEec
Confidence 33456789999999999999751 11 34455566666666666654 344555544444 56666654
Q ss_pred ccCCcccCCCC-CCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 280 YYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 280 ~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
...... .+.. ......+.+.|+++ ||.+.|. .+++||+++. +++++++++++|+++++++.
T Consensus 392 ~~~~~~-~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 392 DPTRAD-GTAEDKAFTLKIDERCFEL-GLIVRPL-----GDLCVISPPLIISRAQIDEMVAIMRQAITEVS 455 (476)
T ss_dssp C------CCHHHHHHHHHHHHHHHHT-TEECEEE-----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred Cccccc-cccchhHHHHHHHHHHHHC-CCEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 210000 0000 00155788888876 9999884 2899999664 99999999999999997764
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=224.76 Aligned_cols=191 Identities=14% Similarity=0.162 Sum_probs=154.3
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIAD 81 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g 81 (352)
+.++..+++ +.+|++++ ..+.|+++ +|++++..++. ++++||+|+++.|+|.++... ++..|
T Consensus 65 ~~p~~~~l~------~~la~~~g------~~~~i~~~-sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G 130 (403)
T 3cog_A 65 GNPTRNCLE------KAVAALDG------AKYCLAFA-SGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFG 130 (403)
T ss_dssp -CHHHHHHH------HHHHHHHT------CSEEEEES-CHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGT
T ss_pred CCchHHHHH------HHHHHHhC------CCcEEEEC-CHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcC
Confidence 345566788 99999986 23555555 55699999998 889999999999999986554 35789
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC-EEEEecccccccccCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-~~livD~~~~~~~~~~~ 160 (352)
.+++.++.+ |++++++++++++++|++++|+||+|.++| +++|+++|+++ | +++|+|++|+.+.+.
T Consensus 131 ~~v~~v~~~-------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~-g~~~livD~~~~~~~~~-- 197 (403)
T 3cog_A 131 LKISFVDCS-------KIKLLEAAITPETKLVWIETPTNPTQKVID---IEGCAHIVHKH-GDIILVVDNTFMSPYFQ-- 197 (403)
T ss_dssp CEEEEECTT-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSS-SCCEEEEECTTTCTTTC--
T ss_pred CEEEEECCC-------CHHHHHHhcCcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCCEEEEECCCcccccC--
Confidence 999999864 789999999999999999999999999999 99999999999 9 999999999875321
Q ss_pred CccccccCCCCCCceEEEecccccccccc-ceeEEEEcC-hhHHHHHHhhhhccccCCChHHHHHHHHHhcc
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
.++. .+.++++.|++|.++.+| .++|+++++ +++++.+......++...+++.+.++...++.
T Consensus 198 --~~~~-----~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 262 (403)
T 3cog_A 198 --RPLA-----LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT 262 (403)
T ss_dssp --CTTT-----TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred --Cccc-----cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH
Confidence 1211 356799999999997555 478999984 78888888776666667888888888877764
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-28 Score=217.84 Aligned_cols=295 Identities=15% Similarity=0.225 Sum_probs=216.1
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++.++..+++ +.++++++ .+++++++|+++++..++.++ .++||+|+++.|+|.++...++..|
T Consensus 33 ~~~~~~~~~~l~------~~la~~~~-------~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g 99 (374)
T 3uwc_A 33 DFTLGAELEKFE------KRFAALHN-------APHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIVQAG 99 (374)
T ss_dssp CCSSCHHHHHHH------HHHHHHTT-------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTT
T ss_pred CcccChhHHHHH------HHHHHHhC-------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHcC
Confidence 467778888999 99999985 348899999999999999999 8999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc-CCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-APA 160 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~-~~~ 160 (352)
.+++.++++ .++.+|++++++++++++++++ |+||||...+ +++|.++|+++ |+++|+|++|+.+.. .+.
T Consensus 100 ~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~---~~~i~~~~~~~-~~~li~D~~~~~g~~~~~~ 170 (374)
T 3uwc_A 100 ATPVLVDSE--NGYVIDPEKIEAAITDKTKAIM---PVHYTGNIAD---MPALAKIAKKH-NLHIVEDACQTILGRINDK 170 (374)
T ss_dssp CEEEEECBC--TTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHT-TCEEEEECTTCTTCEETTE
T ss_pred CEEEEEecC--CCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCC---HHHHHHHHHHc-CCEEEEeCCCccCceeCCe
Confidence 999999987 4567899999999988888777 8899999999 99999999999 999999999986422 111
Q ss_pred CccccccCCCCCCceEEEeccc--cccccccceeEEEEcC-hhHHHHHHhhhhc------------cccCCChHHHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQSQ------------FTSGASSISQKAGV 225 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~s--K~~g~~g~~~g~l~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 225 (352)
.... ..++++.|+| |.++..|. .|+++++ +.+.+.+...... ++...+.+...+..
T Consensus 171 ---~~~~-----~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~ 241 (374)
T 3uwc_A 171 ---FVGS-----WGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIAN 241 (374)
T ss_dssp ---ETTS-----SSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHH
T ss_pred ---eccc-----cccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHH
Confidence 1111 1247788866 99974364 7888765 4676666654321 11122333332222
Q ss_pred HHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCC-ceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 226 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG-VKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g-~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
.. .+.+++..++.+++.+.+.+.|+++++ +.+... ..+...|..++-.. .+..++.+.|.+
T Consensus 242 ~~-------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~L~~ 304 (374)
T 3uwc_A 242 RL-------MNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV----------KYRDQLFQYLKD 304 (374)
T ss_dssp HH-------GGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE----------TTHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc----------CCHHHHHHHHHH
Confidence 22 234566777788888899999998866 666422 22221211111100 167789999887
Q ss_pred ccCEEeccCCCCC----------------C-------CCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 304 KAQVALVPGDAFG----------------D-------DTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 304 ~~gi~i~~g~~~~----------------~-------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+ ||.+.++.... . ...+|++++. +++|++++++.|++++++.
T Consensus 305 ~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 305 N-GIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp T-TBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred C-CCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 6 99998875100 0 1579999887 8999999999999999764
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=226.87 Aligned_cols=283 Identities=11% Similarity=0.078 Sum_probs=206.8
Q ss_pred HHHHHHHH-hcCCCCCCC-c-EEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCCh--HHHHHhcCCeEEEecccCC--C
Q 018665 21 QQFVINLK-ENGLSYTPD-Q-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRIS--E 93 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~-~-i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~--~~~~~~~g~~v~~i~~~~~--~ 93 (352)
+.+.+.+. ..| ++++ + +++|+|+++++..++.+++++||+|+++.+.+.+. ...++..| +++.++++.+ .
T Consensus 52 ~~~~~~la~~~g--~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~ 128 (362)
T 2c0r_A 52 NEAQARLLALLG--NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNY 128 (362)
T ss_dssp HHHHHHHHHHTT--CCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTT
T ss_pred HHHHHHHHHHhC--CCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEeccccccc
Confidence 44444444 334 3443 6 57789999999999999999999999887765543 35677789 9999988632 2
Q ss_pred CcccCHHHHHhhccCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCC
Q 018665 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 172 (352)
Q Consensus 94 ~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
+..+|.++++ +++++++|++++|+||||.. .+ +++| + |+++|+|++|+.+. .+..+.. .
T Consensus 129 ~~~~~~~~~~--i~~~t~~v~~~~~~n~tG~~~~~---l~~i------~-~~~vivD~a~~~~~----~~~~~~~----~ 188 (362)
T 2c0r_A 129 MTLPKLQEIQ--LQDNAAYLHLTSNETIEGAQFKA---FPDT------G-SVPLIGDMSSDILS----RPFDLNQ----F 188 (362)
T ss_dssp CSCCCGGGCC--CCTTEEEEEEESEETTTTEECSS---CCCC------T-TSCEEEECTTTTTS----SCCCGGG----C
T ss_pred ccCCCHHHcc--cCCCcCEEEEeCCcCccceeccc---cccc------C-CCEEEEEChhhccC----CccchhH----C
Confidence 2234666654 67789999999999999996 45 5554 8 99999999998642 1222221 1
Q ss_pred CceEEEeccccccccccceeEEEEcChhHHHHHHhh------------hhccccCCChHHHHHHHHHhcccCCChH-HHH
Q 018665 173 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI------------QSQFTSGASSISQKAGVAALGLGYAGGE-VVS 239 (352)
Q Consensus 173 ~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 239 (352)
.+++.|+||++|++| +||+++++++++.+... .....++++.+.+.++.++++.. ... .++
T Consensus 189 --d~~~~s~~K~~g~~G--~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~--~~~~~~~ 262 (362)
T 2c0r_A 189 --GLVYAGAQKNLGPSG--VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWI--EERGGLE 262 (362)
T ss_dssp --SEEEEETTTTTCCSS--CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHH
T ss_pred --cEEEEeccccccCcC--cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHH--HHhCCHH
Confidence 488889999998666 89999998876655321 11233568888888888888741 122 578
Q ss_pred HHHHHHHHHHHHHHHHhcccCCc-eecCC---CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGELEGV-KMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~-~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
+++++++++++++.+.|++++++ .+..+ ..+.++++.+++.. ++.++++.|.++ ||.+.+|..+
T Consensus 263 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~-gi~~~~g~~~ 330 (362)
T 2c0r_A 263 GVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEE-----------LEKEFVKASEQE-GFVGLKGHRS 330 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHH-----------HHHHHHHHHHHT-TEESCBCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcc-----------hHHHHHHHHHHC-CCeeccCCCC
Confidence 88999999999999999988435 65421 23455777776421 577899888765 9998887655
Q ss_pred CCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 316 GDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 316 ~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+++|+|++. ++++++++++.|++++++.
T Consensus 331 --~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 331 --VGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp --TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 5689999986 8899999999999988754
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=228.40 Aligned_cols=281 Identities=11% Similarity=0.064 Sum_probs=207.2
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCCh-HHHHHHHHHHhcCC---CCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGA-KQSILQAVLAVCSP---GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~-~~a~~~~~~~l~~~---~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ .+ ++++|++++|+ ++++..++.++..+ ++.|+++.++|.. ...++..| +++.++++++++ .
T Consensus 55 ~~la~~~g---~~-~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~-~ 127 (360)
T 1w23_A 55 NLLRELLQ---IP-NDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKANS-Y 127 (360)
T ss_dssp HHHHHHHT---CC-TTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGGGT-S
T ss_pred HHHHHHhC---CC-CCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEEeecccccC-c
Confidence 66776665 22 35699999999 99999999998765 4567777766654 34567789 999999864232 3
Q ss_pred cCHHHHHh-hccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 97 LDPKVLES-KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 97 ~d~~~l~~-~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
+|++++++ ++++++++|++++|+||||.+++ ++. +++ |+++|+|++|+.+. .+.++.. . .
T Consensus 128 ~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~--~i~------~~~-~~~li~D~a~~~~~----~~~~~~~----~--d 188 (360)
T 1w23_A 128 QSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ--NFP------EIN-HAPLIADMSSDILS----RPLKVNQ----F--G 188 (360)
T ss_dssp CSCCCGGGCCCCTTEEEEEEESEETTTTEECS--SCC------CCC-SSCEEEECTTTTTS----SCCCGGG----C--S
T ss_pred CCccchHhhccCCCCCEEEEeCCCCCcceecc--ccc------ccC-CceEEEechhhcCC----CCcCccc----C--C
Confidence 78999999 88889999999999999999987 232 278 99999999998642 1122222 1 3
Q ss_pred EEEeccccccccccceeEEEEcChhHHHHHHhhh------------hccccCCChHHHHHHHHHhcccCCChH-HHHHHH
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------------SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMV 242 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 242 (352)
+++.|+||.+|++| +||+++++++++.+.... .....+++...+.++.++++.. ... ++++++
T Consensus 189 i~~~s~sK~~~~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~ 264 (360)
T 1w23_A 189 MIYAGAQKNLGPSG--VTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWI--KDLGGAEAIA 264 (360)
T ss_dssp EEEEETTTTTSCTT--CEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHH
T ss_pred EEEEEcccccCCCC--cEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHH--HHhcCHHHHH
Confidence 88999999998555 899999988876554321 1112345666667777777541 122 678889
Q ss_pred HHHHHHHHHHHHHhcccCCc-eec-CC--CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCC
Q 018665 243 KAFRERRDFLVKSFGELEGV-KMS-EP--QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 318 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~-~~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~ 318 (352)
++++++++++.+.|++++++ ... .+ .+++++++.+++.. +..++.+.|.++ ||.+.+|..+ +
T Consensus 265 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~-gi~~~~~~~~--~ 330 (360)
T 1w23_A 265 KQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEE-----------LNQQFLAKAKEQ-GFVGLNGHRS--V 330 (360)
T ss_dssp HHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHH-----------HHHHHHHHHHHT-TEESCBCCTT--T
T ss_pred HHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCCc-----------cHHHHHHHHHHC-CeeeecCCCC--C
Confidence 99999999999999988655 543 23 34657888887531 466788887765 9999887653 6
Q ss_pred CeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 319 TCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 319 ~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
+++|++++. +++++++++++|++++++
T Consensus 331 ~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 331 GGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 899999986 889999999999998764
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=228.10 Aligned_cols=292 Identities=17% Similarity=0.126 Sum_probs=217.0
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHh----cCCCC-----EEEecCCCCCChHHHHHhcCCeEEEeccc
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAV----CSPGD-----EVIIPAPFWVSYPEMARIADATPVILPTR 90 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l----~~~~~-----~vl~~~~~~~~~~~~~~~~g~~v~~i~~~ 90 (352)
+.+++++. ..|.+ ..+++++|+++++..++.++ .++|| +|+++.+.|..+...++..|.+++.++++
T Consensus 110 ~~l~~~la~~~g~~---~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~ 186 (474)
T 1wyu_B 110 WELGEYLKALTGMD---AITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG 186 (474)
T ss_dssp HHHHHHHHHHHTCS---EEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHHCCC---ceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC
Confidence 55555555 34433 24678899999998766554 34666 99999999999999999999999999986
Q ss_pred CCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCC
Q 018665 91 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 169 (352)
Q Consensus 91 ~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~ 169 (352)
.++.+|+++|++++++++++|++++| ||+|.+ .+ +++|+++|+++ |+++|+|++|+...+ +. .....
T Consensus 187 --~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~---l~~i~~l~~~~-g~~li~Dea~~~~~~-g~--~~~~~-- 254 (474)
T 1wyu_B 187 --PEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERR---ILEISRLCKEA-GVQLYYDGANLNAIM-GW--ARPGD-- 254 (474)
T ss_dssp --TTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTT---HHHHHHHHHHH-TCEEEEEGGGGGGTT-TT--CCHHH--
T ss_pred --CCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCC---HHHHHHHHHHc-CCEEEEeCchhhhhc-cC--CCccc--
Confidence 34678999999999989999999998 589988 46 99999999999 999999999976543 11 11111
Q ss_pred CCCCceEEEeccccccccc----cceeEEEEcChhHHHHHHh-hh------------------hccccCCChHHHHHHHH
Q 018665 170 GMWERTLTVNGFSKAFAMT----GWRLGYIAGPKHFVAACNK-IQ------------------SQFTSGASSISQKAGVA 226 (352)
Q Consensus 170 ~~~~~~i~~~s~sK~~g~~----g~~~g~l~~~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~~~~ 226 (352)
.+.++++.|+||.++.+ |+|+|++++++++++.+.. .. .....+.+...+.++..
T Consensus 255 --~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~ 332 (474)
T 1wyu_B 255 --MGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWA 332 (474)
T ss_dssp --HTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHH
T ss_pred --CCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHH
Confidence 24558899999999655 3689999999988776541 10 01122356667777777
Q ss_pred HhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE-EEeecCCccCCcccCCCCCCChHHHHHHHHHcc
Q 018665 227 ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY-LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 305 (352)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (352)
++... ..+++++..+++.++++++.+.|+++ |+++..+...+. +++.++.. .+..++.++|.++
T Consensus 333 ~l~~~--g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~L~~~- 397 (474)
T 1wyu_B 333 YIRTL--GLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQPPEG-----------FRALDLAKGLLEL- 397 (474)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBCSTT-----------CCHHHHHHHHHHT-
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEcCCC-----------CCHHHHHHHHHHC-
Confidence 76531 24667888889999999999999987 877743332221 44555322 1788999999977
Q ss_pred CEEeccCCCCC--CCCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 306 QVALVPGDAFG--DDTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 306 gi~i~~g~~~~--~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
||.+ ++..|. .++++||+++. +++++++++++|++++++
T Consensus 398 Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 398 GFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp TCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred Cccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 8875 444443 36799999998 899999999999998865
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-28 Score=218.38 Aligned_cols=282 Identities=13% Similarity=0.133 Sum_probs=202.2
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcCC
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADA 82 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g~ 82 (352)
.+...+++ +.++++++ .++.++++|+++++..++.+++++||+|+++.++|.++... ++..|.
T Consensus 58 ~~~~~~l~------~~la~~~g-------~~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 124 (389)
T 3acz_A 58 NPTVEQFE------EMVCSIEG-------AAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGI 124 (389)
T ss_dssp CHHHHHHH------HHHHHHHT-------CSEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHH------HHHHHHhC-------CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCC
Confidence 34445677 99999985 23677778888999999999999999999999999987765 578999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++. .|++++++++++++++|++++|+||+|.+.| +++|.++|+++ |+++|+|++|..+.+.
T Consensus 125 ~~~~v~~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~-~~~livD~~~~~~~~~---- 189 (389)
T 3acz_A 125 EVDLIDT-------SDVEKVKAAWKPNTKMVYLESPANPTCKVSD---IKGIAVVCHER-GARLVVDATFTSPCFL---- 189 (389)
T ss_dssp EEEEECT-------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECTTTCTTTC----
T ss_pred EEEEECC-------CCHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcccccc----
Confidence 9999986 3899999999989999999999999999999 99999999999 9999999999865321
Q ss_pred cccccCCCCCCceEEEecccccccccccee-EEEEcCh-hHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~-g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
.++. .+.++++.|++|.++.+|.|+ |++++++ ++++.+......++.+.++..+.++.+.++. ....+++
T Consensus 190 ~~~~-----~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---l~~r~~~ 261 (389)
T 3acz_A 190 KPLE-----LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKT---LPIRMQI 261 (389)
T ss_dssp CGGG-----TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---HHHHHHH
T ss_pred Cccc-----cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH---HHHHHHH
Confidence 1221 356699999999998788887 9999998 8988887766555666777777777777764 1222333
Q ss_pred HHHHHHHHHHHHHHHhccc--------------CCceecCC---CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 241 MVKAFRERRDFLVKSFGEL--------------EGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~--------------~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
..++...+.+.|++. |++.+..+ ..|.++.+.++ ..+++.+.| +
T Consensus 262 ----~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~--------------~~~~~~~~l-~ 322 (389)
T 3acz_A 262 ----HMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK--------------SFEAAKKLM-E 322 (389)
T ss_dssp ----HHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES--------------SHHHHHHHH-T
T ss_pred ----HHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC--------------CHHHHHHHH-H
Confidence 333444444444432 22322211 12344556654 233444444 4
Q ss_pred ccCEEecc---C------CCC----------------C-CCCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 304 KAQVALVP---G------DAF----------------G-DDTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 304 ~~gi~i~~---g------~~~----------------~-~~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
+.|+.+.+ | ..+ + .++++|+|++.. +.+++++.|.+++++
T Consensus 323 ~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li~~l~~al~~ 388 (389)
T 3acz_A 323 HLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDIIADLKQALEL 388 (389)
T ss_dssp TCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHHTC
T ss_pred hCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHHhh
Confidence 45777665 3 111 1 157999999983 666677777777653
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=220.34 Aligned_cols=290 Identities=12% Similarity=0.070 Sum_probs=202.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH---HHHhc--CCeEEEecccCCCCc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE---MARIA--DATPVILPTRISENF 95 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~---~~~~~--g~~v~~i~~~~~~~~ 95 (352)
+.++++++ .++++|++++| ++++..++.+++++||+|+++.|+|.++.. .+... +..++.++++ .++
T Consensus 78 ~~la~~~g-----~~~~~i~~~sG-t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~ 149 (417)
T 3n0l_A 78 ERCKKLFN-----CKFANVQPNSG-SQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDG 149 (417)
T ss_dssp HHHHHHHT-----CSEEECCCSSH-HHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTS
T ss_pred HHHHHHhC-----CCCcceEeccH-HHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCC
Confidence 35566654 45566877766 799999999999999999999999987654 33343 3445555554 556
Q ss_pred ccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCCCccccccCCCCCC
Q 018665 96 LLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 96 ~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~~~~~~~~~~~~~~ 173 (352)
.+|+++|+++++ +++++|++++++| |...+ +++|.++|+++ |+++|+|++++ +..+.+..+..+. .
T Consensus 150 ~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~~~~~------~ 217 (417)
T 3n0l_A 150 RIDYEKVREIAKKEKPKLIVCGASAY--ARVID---FAKFREIADEI-GAYLFADIAHIAGLVVAGEHPSPFP------Y 217 (417)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECCSSC--CSCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCCTT------T
T ss_pred CcCHHHHHHHHHhcCCeEEEECCccc--CccCC---HHHHHHHHHHc-CCEEEEECccchhhhhcccCCCccc------c
Confidence 799999999997 6899999888886 88888 99999999999 99999999964 3333332222211 2
Q ss_pred ceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhhcc-ccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 251 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
.++++.|+||.+ +|.|.||++++ +++++.+....... ..+++...+.++..++... ..+.+++..+++++++++
T Consensus 218 ~di~~~s~sK~l--~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~ 293 (417)
T 3n0l_A 218 AHVVSSTTHKTL--RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFN--LSDEWKVYAKQVRTNAQV 293 (417)
T ss_dssp CSEEEEESSTTT--CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHH
T ss_pred ceEEEeeCcccc--CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHH
Confidence 348999999988 56788999998 78888887654333 2344555555555555431 135567888889999999
Q ss_pred HHHHhcccCCceecC-CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC------CCCeEEEE
Q 018665 252 LVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG------DDTCIRIS 324 (352)
Q Consensus 252 l~~~l~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~------~~~~iRi~ 324 (352)
+.+.|++. |+.+.. +..+.++|+.++... .+...+.+.|.+ .||.+.++..+. .+..+|++
T Consensus 294 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~ri~ 361 (417)
T 3n0l_A 294 LANVLMDR-KFKLVSDGTDNHLVLMSFLDRE----------FSGKDADLALGN-AGITANKNTVPGEIRSPFITSGLRLG 361 (417)
T ss_dssp HHHHHHHT-TCEEGGGSCSSSEEEEECTTSS----------SCHHHHHHHHHH-TTEECEECCCTTCCSCTTTCSEEEEE
T ss_pred HHHHHHhC-CceeccCCCCceEEEEEcccCC----------CCHHHHHHHHHH-cCeEEeccccCCCCcccCCCCeeEec
Confidence 99999884 887764 244556777775321 156777777765 599998654332 23569999
Q ss_pred eec------CHHHHHHHHHHHHHHHhhh
Q 018665 325 YAA------SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 325 ~~~------~~~~l~~~~~~l~~~~~~~ 346 (352)
+.. ++++++++++.|++++++.
T Consensus 362 ~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 362 TPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 863 5799999999999998764
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-27 Score=215.26 Aligned_cols=303 Identities=19% Similarity=0.273 Sum_probs=214.4
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
|++..|..+++ .++++.++++++ . +++++++++++++..++.++ +++||+|+++.|+|.++...++..|.
T Consensus 34 ~~~~~g~~~l~--~~l~~~la~~~g-----~--~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~ 104 (418)
T 2c81_A 34 SGYWTGEESME--RKFAKAFADFNG-----V--PYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVLNVNA 104 (418)
T ss_dssp TSBCCSSCCHH--HHHHHHHHHHHT-----C--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTC
T ss_pred cCcccCCHHHH--HHHHHHHHHHhC-----C--CcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHHHcCC
Confidence 55556644433 112266666664 2 25677888899999999999 88999999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc-cCCCC
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPAT 161 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~-~~~~~ 161 (352)
+++.++++. .++.+|+++|++++++++++|+++ ||+|...+ +++|.++|+++ |+++|+|++|+.+. +++.
T Consensus 105 ~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~---~~~i~~~~~~~-~~~li~D~a~~~~~~~~~~- 175 (418)
T 2c81_A 105 LPVFVDVEA-DTYCIDPQLIKSAITDKTKAIIPV---HLFGSMAN---MDEINEIAQEH-NLFVIEDCAQSHGSVWNNQ- 175 (418)
T ss_dssp EEEEECBCT-TTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCC---HHHHHHHHHHT-TCEEEEECTTCTTCEETTE-
T ss_pred EEEEEecCC-CCCCcCHHHHHHhhCCCCeEEEEe---CCcCCccc---HHHHHHHHHHC-CCEEEEECcccccCccCCE-
Confidence 999999864 356799999999998888888754 57899888 99999999999 99999999999865 4332
Q ss_pred ccccccCCCCCCceEEEecc--ccccccccceeEEEEcC-hhHHHHHHhhhhccc------------cC-----------
Q 018665 162 HTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT------------SG----------- 215 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~--sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~~------------~~----------- 215 (352)
.+... . .+.+.|+ +|.+|. | +.|+++++ +++++.+........ +.
T Consensus 176 --~~~~~----~-~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 246 (418)
T 2c81_A 176 --RAGTI----G-DIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGS 246 (418)
T ss_dssp --ETTSS----S-SEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCC
T ss_pred --ecccc----c-ceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCc
Confidence 11111 1 2677777 999985 7 99999984 788777765432211 00
Q ss_pred ---CChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC-CCC-ce----EEEeecCCccCCccc
Q 018665 216 ---ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQG-AF----YLFIDFSTYYGSEAE 286 (352)
Q Consensus 216 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~-g~----~~~~~~~~~~~~~~~ 286 (352)
.+. .+.+.. +.. .+.+++..++.+++++++.+.|++++++.+.. +.+ +. .+.+.+++.. ..
T Consensus 247 ~~~~~~-~~aa~~--~~~----l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 316 (418)
T 2c81_A 247 NYCLSE-FQSAIL--LDQ----LQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVK---FG 316 (418)
T ss_dssp BCCCCH-HHHHHH--HHH----HTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGG---TT
T ss_pred CCCcCH-HHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEcccc---cc
Confidence 111 111111 111 23356677777788889999999888888873 443 22 2226665300 00
Q ss_pred CCCCCCChHHHHHHHHHccCEE---eccCCCCC-----------------------------C-------CCeEEEEeec
Q 018665 287 GFGKIENSESLCRYLLDKAQVA---LVPGDAFG-----------------------------D-------DTCIRISYAA 327 (352)
Q Consensus 287 ~~~~~~~~~~~~~~l~~~~gi~---i~~g~~~~-----------------------------~-------~~~iRi~~~~ 327 (352)
+ .+..++.+.|.+++||. +.++.... . .+.+||+++.
T Consensus 317 ~----~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~ 392 (418)
T 2c81_A 317 G----LNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAI 392 (418)
T ss_dssp T----CCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGG
T ss_pred c----cCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCc
Confidence 0 16789999998766899 77764210 0 1479999963
Q ss_pred ---CHHHHHHHHHHHHHHHhhhC
Q 018665 328 ---SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 328 ---~~~~l~~~~~~l~~~~~~~~ 347 (352)
+++|++++++.|++++++++
T Consensus 393 ~~gt~edi~~~~~~l~~~~~~~~ 415 (418)
T 2c81_A 393 LLAEPSHLSLLVDAVAELARKFC 415 (418)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHHHHhhc
Confidence 78999999999999988754
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-27 Score=215.62 Aligned_cols=278 Identities=18% Similarity=0.205 Sum_probs=203.0
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcCCe
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADAT 83 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g~~ 83 (352)
+...+++ +.++++++ .+++++++|+++|+..++.+++++||+|+++.|.|.++...+ +..|.+
T Consensus 56 ~~~~~l~------~~la~~~g-------~~~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~ 122 (412)
T 2cb1_A 56 PTAKALE------ERLKALEG-------ALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVT 122 (412)
T ss_dssp HHHHHHH------HHHHHHHT-------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCE
T ss_pred hHHHHHH------HHHHHHhC-------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCE
Confidence 3456677 99999885 358999999999999999999999999999999998776654 457999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
++.++. |+++|++++++++++|++++|+||+|.+.| +++|+++|+++ |+++|+|++|+.+.+.. .
T Consensus 123 ~~~~~~--------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~-~~~li~D~~~~~~~~~~---~ 187 (412)
T 2cb1_A 123 VRYVDP--------EPEAVREALSAKTRAVFVETVANPALLVPD---LEALATLAEEA-GVALVVDNTFGAAGALC---R 187 (412)
T ss_dssp EEEECS--------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECGGGTTTTSC---C
T ss_pred EEEECC--------CHHHHHHHhccCCeEEEEeCCCCCCccccc---HHHHHHHHHHc-CCEEEEECCCccccccC---C
Confidence 998874 389999999989999999999999999999 99999999999 99999999998752111 1
Q ss_pred ccccCCCCCCceEEEeccccccccccceeEEEEcCh----------------------------hHHHHHHhhh-hcccc
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK----------------------------HFVAACNKIQ-SQFTS 214 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~----------------------------~~~~~~~~~~-~~~~~ 214 (352)
+. ..+.++++.|++|.++.+|.|+|++++.+ ++.+.++... ...+.
T Consensus 188 ~~-----~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~ 262 (412)
T 2cb1_A 188 PL-----AWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGM 262 (412)
T ss_dssp GG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCC
T ss_pred cc-----ccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCC
Confidence 11 13566999999999977888899887533 3344444432 22223
Q ss_pred CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceec-CC----------------CCceEEEeec
Q 018665 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EP----------------QGAFYLFIDF 277 (352)
Q Consensus 215 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~----------------~~g~~~~~~~ 277 (352)
..++.....+...++. +....++..++.+.+.+.|.+.+++..+ .| ..+.++.+.+
T Consensus 263 ~~~~~~a~~~~~~l~~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~ 335 (412)
T 2cb1_A 263 ALSPFNAYLLFQGLET-------VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL 335 (412)
T ss_dssp CCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC
T ss_pred CCChHHhHHHHcCCch-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe
Confidence 3455555444444432 3444555667888899999888887744 22 2344566666
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC---------CCC-----------------CCCeEEEEeec--CH
Q 018665 278 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD---------AFG-----------------DDTCIRISYAA--SL 329 (352)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~---------~~~-----------------~~~~iRi~~~~--~~ 329 (352)
+ +.+++.+.|.+ .||.+ .++ .+. .++.+|+|++. ++
T Consensus 336 -~-------------~~~~~~~~l~~-~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~ 399 (412)
T 2cb1_A 336 -G-------------DLERASRFLGA-IRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPL 399 (412)
T ss_dssp -S-------------SHHHHHHHHHH-CSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHH
T ss_pred -C-------------CHHHHHHHHHh-CCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHH
Confidence 3 45666666554 58888 663 221 15789999998 66
Q ss_pred HHHHHHHHHHHH
Q 018665 330 TTLQAAVERIKK 341 (352)
Q Consensus 330 ~~l~~~~~~l~~ 341 (352)
++++++.+.|++
T Consensus 400 ~~i~~l~~al~~ 411 (412)
T 2cb1_A 400 DLLALFEEALEA 411 (412)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 788888877764
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=225.45 Aligned_cols=304 Identities=13% Similarity=0.089 Sum_probs=205.2
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC--------CCCEEEecCCCCCChHHHHHhcCC---------
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA--------- 82 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~~~~vl~~~~~~~~~~~~~~~~g~--------- 82 (352)
..+++.+. ..+ ...++|++++|+++|++.+++.+.. ++++|++.++.|+++.......+.
T Consensus 102 ~~lae~l~~~~~--~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~ 179 (472)
T 3hmu_A 102 IALAQKLAELAP--GDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG 179 (472)
T ss_dssp HHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC
T ss_pred HHHHHHHHHhCC--CCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC
Confidence 55666655 332 3467999999999999999998764 467999999999987755543322
Q ss_pred ---eEEEecccC--C-CCcccC--------HHHHHhhcc----CCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCC
Q 018665 83 ---TPVILPTRI--S-ENFLLD--------PKVLESKLT----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPR 143 (352)
Q Consensus 83 ---~v~~i~~~~--~-~~~~~d--------~~~l~~~l~----~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~ 143 (352)
.+..++.+. . .++ .| ++.|++.++ +++++|+++.+++++|... |.+++++|.++|+++ |
T Consensus 180 ~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~-g 257 (472)
T 3hmu_A 180 LIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKY-D 257 (472)
T ss_dssp CCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHT-T
T ss_pred CCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHc-C
Confidence 344555432 0 111 23 788888875 4567777777788888765 788999999999999 9
Q ss_pred EEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHh--hhhccccCCChHHH
Q 018665 144 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK--IQSQFTSGASSISQ 221 (352)
Q Consensus 144 ~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~--~~~~~~~~~~~~~~ 221 (352)
+++|+||+|.++.+.|.. ........ .++ +.++||.++.+|+|+|++++++++++.+.. .....+++.|++++
T Consensus 258 illI~DEv~~gfgr~G~~-~a~~~~~v-~pd---i~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~ 332 (472)
T 3hmu_A 258 ILLIADEVICGFGRTGNW-FGTQTMGI-RPH---IMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAA 332 (472)
T ss_dssp CEEEEECTTTTTTTTSSS-CHHHHHTC-CCS---EEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHH
T ss_pred CEEEEEccccCCcccCcc-chhHHhCC-CCc---eeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHH
Confidence 999999999998776642 11111111 122 346889998445899999999999998832 13345678999999
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHH-HHHHHHHHHhcc---cCCceecCCCCceEEEeecCCccCCcccCCCC--CCChH
Q 018665 222 KAGVAALGLGYAGGEVVSKMVKAFR-ERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK--IENSE 295 (352)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~ 295 (352)
+++.++++.. +. +++.++++ ++.+++++.|++ ++.+..+.+.+. ++++++........ .+.. .....
T Consensus 333 aAa~aaL~~~----~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~-~~~i~~~~~~~~~~-~~~~~~~~~~~ 405 (472)
T 3hmu_A 333 AVALENLRIL----EE-ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGM-MASIALTPNKASRA-KFASEPGTIGY 405 (472)
T ss_dssp HHHHHHHHHH----HH-TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETT-EEEEEECSCGGGTC-CBSSCTTHHHH
T ss_pred HHHHHHHHHH----HH-hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc-eEEEEEecCccccc-cccchhHHHHH
Confidence 9999998741 11 23444455 555555555543 445555554444 45566543110000 0000 00156
Q ss_pred HHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 296 SLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 296 ~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.+.|+++ ||.+.+++ +++|++++. +++++++++++|+++++++
T Consensus 406 ~~~~~l~~~-Gv~v~~~g-----~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 406 ICRERCFAN-NLIMRHVG-----DRMIISPPLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp HHHHHHHHT-TBCCEEET-----TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CcEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 788888876 99998863 899999765 9999999999999998765
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-28 Score=219.82 Aligned_cols=291 Identities=13% Similarity=0.080 Sum_probs=210.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH-H--HHhcC--CeEEEecccCCCCc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE-M--ARIAD--ATPVILPTRISENF 95 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~-~--~~~~g--~~v~~i~~~~~~~~ 95 (352)
+.++++++ .+++.++++ +|++++..++.++.++||+|+++.|+|..+.. . +...| .+++.+++++ .++
T Consensus 76 ~~la~~~g-----~~~~~i~~~-sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~ 148 (405)
T 2vi8_A 76 ERAKQLFG-----AEHANVQPH-SGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETH 148 (405)
T ss_dssp HHHHHHHT-----CSEEECCCS-SHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCT-TTC
T ss_pred HHHHHHhC-----CCceEEEec-CcHHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEeccccc-ccC
Confidence 47777775 333334344 55999999999999999999999999988753 1 12223 4777777642 356
Q ss_pred ccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc-CCCCccccccCCCCCC
Q 018665 96 LLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-APATHTSFASLPGMWE 173 (352)
Q Consensus 96 ~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~-~~~~~~~~~~~~~~~~ 173 (352)
.+|+++|++++++ +++++++ +++|. |...+ +++|.++|+++ |+++|+||+|+.... .+... ..+. .
T Consensus 149 ~~d~~~l~~~i~~~~~~~v~~-~~~~~-~~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~---~~~~---~ 216 (405)
T 2vi8_A 149 VIDYDDVREKARLHRPKLIVA-AAAAY-PRIID---FAKFREIADEV-GAYLMVDMAHIAGLVAAGLHP---NPVP---Y 216 (405)
T ss_dssp SBCHHHHHHHHHHHCCSEEEE-CCSSC-CSCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSC---CSTT---T
T ss_pred CcCHHHHHHHHHhcCCeEEEE-eCCCC-CccCC---HHHHHHHHHHc-CCEEEEEccccccccccCcCC---Cccc---c
Confidence 7899999999975 7888776 44443 45556 89999999999 999999999984322 12111 1111 2
Q ss_pred ceEEEeccccccc-cccceeEEEEcChhHHHHHHhhhhccccC-CChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 251 (352)
Q Consensus 174 ~~i~~~s~sK~~g-~~g~~~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
..+++.|+||.++ +.| |++++++++++.+......+..+ ++.....++.++++.. ...+++++.+++++++++
T Consensus 217 ~di~~~s~sK~~~g~~g---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~~~ 291 (405)
T 2vi8_A 217 AHFVTTTTHKTLRGPRG---GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNAKR 291 (405)
T ss_dssp CSEEEEESSSTTCCCSC---EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCCCCCC---eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHH
Confidence 2388999999996 333 99999999988887664444433 3555555555666531 135778889999999999
Q ss_pred HHHHhcccCCceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC----C--CCCCeEEEE
Q 018665 252 LVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA----F--GDDTCIRIS 324 (352)
Q Consensus 252 l~~~l~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~----~--~~~~~iRi~ 324 (352)
+.+.|+++ |+.+..+ ..++++|+.++... .+..++.+.|.++ ||.+.+|.. + ..++++|++
T Consensus 292 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~iRis 359 (405)
T 2vi8_A 292 LASALQNE-GFTLVSGGTDNHLLLVDLRPQQ----------LTGKTAEKVLDEV-GITVNKNTIPYDPESPFVTSGIRIG 359 (405)
T ss_dssp HHHHHHHT-TCEEGGGSCSSSEEEEECGGGT----------CCHHHHHHHHHHH-TEECEEECCTTCSSCTTTCSEEEEE
T ss_pred HHHHHHhC-CCeEecCCCCceEEEEEccCCC----------CCHHHHHHHHHHc-CceeccCcCccccCCCCCCCceEEe
Confidence 99999988 8888765 45778889886421 1677888888654 999998752 1 235689999
Q ss_pred eec------CHHHHHHHHHHHHHHHhhhC
Q 018665 325 YAA------SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 325 ~~~------~~~~l~~~~~~l~~~~~~~~ 347 (352)
++. +++++++++++|++++++..
T Consensus 360 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 360 TAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred eeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 984 79999999999999997764
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=215.67 Aligned_cols=292 Identities=17% Similarity=0.253 Sum_probs=213.7
Q ss_pred ccC-CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVR-VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~-~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
+|+ +.++..++| +.++++++ .+++++++|+++++..++.++ .++||+|+++.|+|.++...++..
T Consensus 50 ~~~~~~~~~~~l~------~~la~~~~-------~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~ 116 (391)
T 3dr4_A 50 WISSVGRFIVEFE------KAFADYCG-------VKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYC 116 (391)
T ss_dssp CCSSCSHHHHHHH------HHHHHHHT-------CSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHHHT
T ss_pred CccCCChHHHHHH------HHHHHHhC-------CCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHHHC
Confidence 354 677788899 99999985 348899999999999999999 899999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc-cCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAP 159 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~-~~~ 159 (352)
|.+++.++++. .++.+|+++|++++++++++|+ ++||||...+ +++|.++|+++ |+++|+|++|+... +.+
T Consensus 117 g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~---~~~i~~l~~~~-~~~li~D~a~~~g~~~~~ 188 (391)
T 3dr4_A 117 GATPVLVDNDP-RTFNLDAAKLEALITPRTKAIM---PVHLYGQICD---MDPILEVARRH-NLLVIEDAAEAVGATYRG 188 (391)
T ss_dssp TCEEEEECBCT-TTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHT-TCEEEEECTTCTTCEETT
T ss_pred CCEEEEEecCc-cccCcCHHHHHHhcCCCceEEE---EECCCCChhh---HHHHHHHHHHc-CCEEEEECcccccceECC
Confidence 99999999874 4467899999999998888877 5679999999 99999999999 99999999998522 221
Q ss_pred CCccccccCCCCCCceEEEeccc--cccccccceeEEEEcCh-hHHHHHHhhhhcc--------------ccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGPK-HFVAACNKIQSQF--------------TSGASSISQK 222 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~s--K~~g~~g~~~g~l~~~~-~~~~~~~~~~~~~--------------~~~~~~~~~~ 222 (352)
. ...... .+.+.|++ |.++ + .+.|+++.++ .+.+.+....... ....+.+..
T Consensus 189 ~---~~~~~~-----di~~~S~s~~K~l~-~-g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~a- 257 (391)
T 3dr4_A 189 K---KSGSLG-----DCATFSFFGNAIIT-T-GEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQA- 257 (391)
T ss_dssp E---ETTSSS-----SEEEEECBTTSSSC-C-BSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHH-
T ss_pred e---eecccC-----CEEEEECCCCCcCC-c-CCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHH-
Confidence 1 111111 26677765 8875 3 4678887654 5666665443211 122333322
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC------CCc-eEEEeecCCccCCcccCCCCCCChH
Q 018665 223 AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP------QGA-FYLFIDFSTYYGSEAEGFGKIENSE 295 (352)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~------~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (352)
+..... .+.+++..++.+++.+++.+.|+++ ++.+..+ ..+ ..+++.+++.. + .+..
T Consensus 258 -a~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~----~~~~ 321 (391)
T 3dr4_A 258 -AIGLAQ-----LERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGL-----S----TTRD 321 (391)
T ss_dssp -HHHHHH-----HHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSC-----S----SCHH
T ss_pred -HHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCcc-----c----hhHH
Confidence 222222 3445667778888888999999988 7776644 122 23456665410 0 1688
Q ss_pred HHHHHHHHccCEEeccCCCC---C-----------------CCCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 296 SLCRYLLDKAQVALVPGDAF---G-----------------DDTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 296 ~~~~~l~~~~gi~i~~g~~~---~-----------------~~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
++.+.|.++ ||.+.++... . ....+|+++.. +++|++++++.|++++
T Consensus 322 ~l~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 322 QVIKDLDAL-GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHHHHHHT-TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHC-CCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 999998876 9999877411 0 02479999887 9999999999998764
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=219.21 Aligned_cols=313 Identities=13% Similarity=0.048 Sum_probs=219.8
Q ss_pred CCCCChhhhccchhhHHHHHHHH-hcCCCCCC---CcEEEeCChHHHHHHHHHHhcC--------CC-----CEEEecCC
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP---DQILVSNGAKQSILQAVLAVCS--------PG-----DEVIIPAP 68 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~---~~i~~~~g~~~a~~~~~~~l~~--------~~-----~~vl~~~~ 68 (352)
..++..+++ +.+.+++. ..|.+... ..+++++|+|+++..++.++.. +| ++|+++.
T Consensus 75 ~~~~~~~l~------~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~- 147 (452)
T 2dgk_A 75 EYPQSAAID------LRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP- 147 (452)
T ss_dssp TCHHHHHHH------HHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-
T ss_pred hChhHHHHH------HHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-
Confidence 344445555 77766666 55543221 2499999999999999888753 33 5899999
Q ss_pred CCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh------CC
Q 018665 69 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HP 142 (352)
Q Consensus 69 ~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~------~~ 142 (352)
.|..+...++..|.+++.++++. +++.+|+++|++++++++++|++++|+||||.+.| +++|.++|++ +
T Consensus 148 ~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~- 222 (452)
T 2dgk_A 148 VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEF---PQPLHDALDKFQADTGI- 222 (452)
T ss_dssp CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCC---HHHHHHHHHHHHHHHCC-
T ss_pred CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHHhhccCC-
Confidence 99999999999999999999874 35779999999999989999999999999999999 8899999988 6
Q ss_pred CEEEEeccccccccc---CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChh-HH-HHHHhhhhcc-----
Q 018665 143 RLLVLSDEIYEHIIY---APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FV-AACNKIQSQF----- 212 (352)
Q Consensus 143 ~~~livD~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~-~~~~~~~~~~----- 212 (352)
|+++++|++|+++.. .+.....+ . ..+-+.++.|++|.+ +++.++|+++++++ ++ +.+.....+.
T Consensus 223 ~~~l~vD~a~~~~~~~~~~~~~~~~~-~---~~~~d~~~~~~hK~~-~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (452)
T 2dgk_A 223 DIDMHIDAASGGFLAPFVAPDIVWDF-R---LPRVKSISASGHKFG-LAPLGCGWVIWRDEEALPQELVFNVDYLGGQIG 297 (452)
T ss_dssp CCCEEEECTTGGGTHHHHCTTCCCST-T---STTEEEEEEETTTTT-CCCSSCEEEEESSGGGSCGGGCEEECCTTCCEE
T ss_pred CCcEEEEcccHHHHHHhhCccchhhc-C---CCCCcEEEECccccc-CCCCCeEEEEEcCHHHHHHHhccCccccCCCCC
Confidence 999999999987642 11111111 1 123456788899965 47889999998643 33 3331111110
Q ss_pred ----ccCC---ChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC----CCceEEEeecCCcc
Q 018665 213 ----TSGA---SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFSTYY 281 (352)
Q Consensus 213 ----~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~----~~g~~~~~~~~~~~ 281 (352)
..+. ....+.++...+. .+.++++.++..++++++.+.|+++++++++.+ ....++.+.+++..
T Consensus 298 ~~~~~~~r~~~~~~~~~aal~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~ 372 (452)
T 2dgk_A 298 TFAINFSRPAGQVIAQYYEFLRLG-----REGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE 372 (452)
T ss_dssp ECCSCCSCBCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTC
T ss_pred CcccCCCChhHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcc
Confidence 1112 2233333333332 466788889999999999999999878888754 33344556665320
Q ss_pred CCcccCCCCCCChHHHHHHHHHccCEEeccCC---CCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 282 GSEAEGFGKIENSESLCRYLLDKAQVALVPGD---AFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~---~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
. .. .+..++.+.|.++ ||.+.... ......++|+++.. ++++++++++.|+++++.++.
T Consensus 373 ~---~~----~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 373 D---PG----YTLYDLSERLRLR-GWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp C---CS----CCHHHHHHHHHHT-TCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred c---cc----CCHHHHHHHHHhc-CCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 0 00 1458899999876 88654321 11124589999987 789999999999999877643
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=216.73 Aligned_cols=283 Identities=13% Similarity=0.097 Sum_probs=201.8
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCCe
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADAT 83 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~~ 83 (352)
+...++| +.+|++++ .++.++++|++++++.++. ++++||+|+++.|.|.+... .++..|.+
T Consensus 55 ~~~~~lr------~~la~~~g-------~~~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 120 (393)
T 1n8p_A 55 PNRENLE------RAVAALEN-------AQYGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120 (393)
T ss_dssp HHHHHHH------HHHHHHTT-------CSEEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSC
T ss_pred hhHHHHH------HHHHHHhC-------CCcEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcE
Confidence 3445677 99999985 2356666777999999999 88999999999999986554 34667999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC---CEEEEecccccccccCCC
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP---RLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~---~~~livD~~~~~~~~~~~ 160 (352)
++.++++ | +++++++++++++|++++|+||+|.++| +++|.++|++++ |+++|+|++|+.+.+.
T Consensus 121 v~~v~~~-------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~-- 187 (393)
T 1n8p_A 121 TSFTNDL-------L-NDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS-- 187 (393)
T ss_dssp CEEESSH-------H-HHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC--
T ss_pred EEEeCCC-------h-HHHHHhcccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC--
Confidence 9999864 6 8899999889999999999999999999 899999998873 7999999999976542
Q ss_pred CccccccCCCCCCceEEEecccccccccccee-EEEEcC-hhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 238 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~-g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (352)
.... .+.++++.|+||.+|.+|+|+ |+++++ +++++.+......++..+++..+.++...++. +
T Consensus 188 ---~~~~----~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-------~ 253 (393)
T 1n8p_A 188 ---NPLN----FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-------L 253 (393)
T ss_dssp ---CGGG----GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------H
T ss_pred ---CHHH----cCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccch-------H
Confidence 1111 245699999999999789898 999884 78888887765545555676666665555543 3
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC-ceec-CC---------------C--C-ceEEEeecCCccCCcccCCCCCCChHHHH
Q 018665 239 SKMVKAFRERRDFLVKSFGELEG-VKMS-EP---------------Q--G-AFYLFIDFSTYYGSEAEGFGKIENSESLC 298 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~~g-~~~~-~~---------------~--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
....++..++.+.+.+.|++.+. +..+ .| . . +.++++.+++.. .+...+.
T Consensus 254 ~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~----------~~~~~~l 323 (393)
T 1n8p_A 254 HLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA----------EAASKFA 323 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH----------HHHHHHH
Confidence 34445555666677777776543 3211 11 1 2 556778876420 0344555
Q ss_pred HHHHHccCEEeccCCCC----------------------C-CCCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 299 RYLLDKAQVALVPGDAF----------------------G-DDTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 299 ~~l~~~~gi~i~~g~~~----------------------~-~~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
+.|. ..++.+..|+.+ + .++.+|+|++. ++++++.+.+.|+++
T Consensus 324 ~~l~-~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 324 SSTR-LFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp HHCS-SSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred hhCC-cceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 5443 234444434211 1 14689999998 667888888888765
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=224.32 Aligned_cols=312 Identities=11% Similarity=0.085 Sum_probs=206.8
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEecCCCCCChHHHH-Hhc
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMA-RIA 80 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~-~~~ 80 (352)
|++++...+++ +.+++++. ..++|++++|++++++.+++.+.. ++++|++.+++|+++...+ ...
T Consensus 89 ~~~~~~~~~l~------~~la~~~~------~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~ 156 (429)
T 3k28_A 89 GAPTEIENKLA------KLVIERVP------SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKA 156 (429)
T ss_dssp SSCCHHHHHHH------HHHHHHST------TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSC
T ss_pred CCCCHHHHHHH------HHHHHhCC------CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhc
Confidence 34455555666 77777652 578999999999999999988753 5678999999988655332 222
Q ss_pred CCeEEEecccCCCCcc------------cCHHHHHhhcc---CCeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCE
Q 018665 81 DATPVILPTRISENFL------------LDPKVLESKLT---EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRL 144 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~------------~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~ 144 (352)
|..+..+..+...+.. .|++.|+++++ +++++++++.++|++|... +.+++++|.++|++| |+
T Consensus 157 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~ 235 (429)
T 3k28_A 157 GSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQN-GA 235 (429)
T ss_dssp CTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH-TC
T ss_pred CCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc-CC
Confidence 3222222221111100 17899998886 3566666666666777665 577899999999999 99
Q ss_pred EEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh---hccccCCChHHH
Q 018665 145 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQ 221 (352)
Q Consensus 145 ~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~---~~~~~~~~~~~~ 221 (352)
++|+||+|.++ ..+.. ........ ...+.++||.+| +|+|+|++++++++++.+.... ...+++.|++.+
T Consensus 236 ~li~DEv~~g~-~~g~~-~~~~~~~~----~~di~t~sK~~~-~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~ 308 (429)
T 3k28_A 236 LLIFDEVMTGF-RVAYN-CGQGYYGV----TPDLTCLGKVIG-GGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAM 308 (429)
T ss_dssp EEEEECTTTTT-TSSTT-HHHHHHTC----CCSEEEECGGGG-TTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHH
T ss_pred EEEEecccccc-ccCcc-hHHHHhCC----CCceehhhhhhc-CCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHH
Confidence 99999999987 55432 11111111 122457999998 6999999999999988775422 334577899999
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc----CCceecCCCCceEEEeecCCccCCcccC--CCCCCChH
Q 018665 222 KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMSEPQGAFYLFIDFSTYYGSEAEG--FGKIENSE 295 (352)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~ 295 (352)
.++.++++.. + ++..++++++++++.+.|+++ +.+....+ .|.++++.+.+.....+.. ........
T Consensus 309 aaa~aal~~~----~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (429)
T 3k28_A 309 AAGYETLVQL----T--PESYVEFERKAEMLEAGLRKAAEKHGIPHHINR-AGSMIGIFFTDEPVINYDAAKSSNLQFFA 381 (429)
T ss_dssp HHHHHHHHTC----C--HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE-ETTEEEEESSSSCCCSHHHHTTSCHHHHH
T ss_pred HHHHHHHHHH----H--HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEe-eccEEEEEEecCCcccccccccccHHHHH
Confidence 9999999862 2 456666777777777766653 33333333 3445666653311000000 00000246
Q ss_pred HHHHHHHHccCEEeccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 296 SLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 296 ~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
++.+.|+++ ||.+.|++ .+.+|+++..+++++++++++|++++++++
T Consensus 382 ~~~~~l~~~-Gv~v~~~~----~~~~r~~~~~t~e~i~~~l~~l~~~l~~~~ 428 (429)
T 3k28_A 382 AYYREMVEQ-GVFLPPSQ----FEGLFLSTVHSDADIEATIAAAEIAMSKLK 428 (429)
T ss_dssp HHHHHHHHT-TEECCSST----TSCBCCCTTCCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHC-CeEEecCC----CCCEEEECCCCHHHHHHHHHHHHHHHHHHh
Confidence 788888876 99998863 467899877799999999999999998764
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=216.26 Aligned_cols=292 Identities=11% Similarity=0.117 Sum_probs=214.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcC--CeEEEecccCCC---
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIAD--ATPVILPTRISE--- 93 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g--~~v~~i~~~~~~--- 93 (352)
+.++++++ .+ +.+++++|+|++++.++..+ ++||+|+++.+.|++.. ..++..| .+++.++.+..+
T Consensus 42 ~~l~~~~~-----~~-~~v~~~~sgt~a~~~~~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 114 (379)
T 3ke3_A 42 SNLKTVYN-----AE-AAVIIPGSGTYGMEAVARQL-TIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTE 114 (379)
T ss_dssp HHHHHHHT-----CS-EEEEEESCHHHHHHHHHHHH-CTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCS
T ss_pred HHHHHHhC-----CC-CEEEEcCChhHHHHHHHHhC-CCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecccccccc
Confidence 55666654 33 78999999999999987655 68999999999987654 4556666 477788765311
Q ss_pred ---C-cccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccC
Q 018665 94 ---N-FLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 168 (352)
Q Consensus 94 ---~-~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~ 168 (352)
. ..+|+++++++++ +++++|++++++|++|.++|.+++++|.++|+++ |+++|+|++++ . ..+..+..
T Consensus 115 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~-~~~li~D~~~~-g----~~~~~~~~- 187 (379)
T 3ke3_A 115 APKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSV-GGLLVIDCIAS-G----CVWLDMKE- 187 (379)
T ss_dssp SCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHT-TCEEEEECTTC-T----TCCCCHHH-
T ss_pred ccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHc-CCEEEEEeccc-C----Cccccccc-
Confidence 1 2479999999995 4889999999999999999999999999999999 99999999976 2 11222221
Q ss_pred CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh----------------------hccccCCChHHHHHHHH
Q 018665 169 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ----------------------SQFTSGASSISQKAGVA 226 (352)
Q Consensus 169 ~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 226 (352)
.+.++++.|++|.++ ++.++|++++++++++.+.... ..+.++++...+.++.+
T Consensus 188 ---~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~a 263 (379)
T 3ke3_A 188 ---LGIDVLISAPQKGWS-STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRD 263 (379)
T ss_dssp ---HTCSEEEECTTTTTC-SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHH
T ss_pred ---cCCCEEEecchhhcC-CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHH
Confidence 234588999999986 4457899999999888775411 01223678888888878
Q ss_pred HhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC---CceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 227 ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
+++.. ..+.++++.++.+++++++.+.|+++ |+++..+. ......+..++ ....+.+.|.+
T Consensus 264 al~~~--~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~L~~ 327 (379)
T 3ke3_A 264 AILEA--KEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTER-------------DDMHKGSAFAE 327 (379)
T ss_dssp HHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSC-------------HHHHSSHHHHH
T ss_pred HHHHH--HHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCC-------------cchHHHHHHHH
Confidence 87641 12336788889999999999999988 87776443 23333333321 11122556665
Q ss_pred ccCEEeccCCCCCC-----CCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 304 KAQVALVPGDAFGD-----DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 304 ~~gi~i~~g~~~~~-----~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
+ ||.+.+|..+.. .+.+|++++. +++|++++++.|+++++++.
T Consensus 328 ~-Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 328 A-GLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp T-TCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred C-CeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 4 999999875432 6799999986 88999999999999998764
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=219.08 Aligned_cols=289 Identities=14% Similarity=0.046 Sum_probs=196.9
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH---HHHHhcC--CeEEEecccCCCCc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARIAD--ATPVILPTRISENF 95 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~---~~~~~~g--~~v~~i~~~~~~~~ 95 (352)
+.++++++ .++++|++++ |++++..++.+++++||+|+++.|+|.++. ..+...| .....++.+ .++
T Consensus 83 ~~la~~~~-----~~~~~v~~~s-Gs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~ 154 (420)
T 3gbx_A 83 DRAKELFG-----ADYANVQPHS-GSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESG 154 (420)
T ss_dssp HHHHHHHT-----CSEEECCCSS-HHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC--TTC
T ss_pred HHHHHHhC-----CCCceeEecC-cHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC--ccC
Confidence 34555554 4455665555 588999999999999999999999998743 2222333 444455544 556
Q ss_pred ccCHHHHHhhccC-CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc-cccCCCCccccccCCCCCC
Q 018665 96 LLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 96 ~~d~~~l~~~l~~-~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~-~~~~~~~~~~~~~~~~~~~ 173 (352)
.+|+++|++++++ ++++|++++|+||+ ..+ +++|.++|+++ |+++|+||+|+. +.+.+.. .... ..
T Consensus 155 ~~d~~~l~~~i~~~~~~~v~~~~~~~~~--~~~---l~~l~~l~~~~-~~~li~De~~~~~~~~~~~~-~~~~-----~~ 222 (420)
T 3gbx_A 155 KIDYDEMAKLAKEHKPKMIIGGFSAYSG--VVD---WAKMREIADSI-GAYLFVDMAHVAGLIAAGVY-PNPV-----PH 222 (420)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECCTTCCS--CCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHTTSS-CCST-----TT
T ss_pred CcCHHHHHHHHHhcCCeEEEEecCccCC--ccC---HHHHHHHHHHc-CCEEEEECCcchhceecccC-Cccc-----cc
Confidence 6899999999976 58999998998864 667 89999999999 999999999763 3222221 1111 12
Q ss_pred ceEEEeccccccccccceeEEEEcCh---hHHHHHHhhhhcccc-CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGPK---HFVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 249 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (352)
.++++.|+||.++ |.+.|++++++ ++.+.+......+.. +++...+.++..++... ..+++++.++++++++
T Consensus 223 ~di~~~s~sK~~~--g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~ 298 (420)
T 3gbx_A 223 AHVVTTTTHKTLA--GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA--MEPEFKVYQQQVAKNA 298 (420)
T ss_dssp SSEEEEESSGGGC--SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHH
T ss_pred CCEEEeecccCCC--CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH--HhHhHHHHHHHHHHHH
Confidence 4489999999984 44569999987 777777654333222 34444454545444331 2466788889999999
Q ss_pred HHHHHHhcccCCceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc-------CCCCCCCCeE
Q 018665 250 DFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-------GDAFGDDTCI 321 (352)
Q Consensus 250 ~~l~~~l~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~-------g~~~~~~~~i 321 (352)
+++.+.|++. |+.+..+ ..++++|+.++... .+...+.+.|.+ .||.+.+ +..+ .+..+
T Consensus 299 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~-~~~~i 365 (420)
T 3gbx_A 299 KAMVEVFLNR-GYKVVSGGTENHLFLLDLVDKN----------LTGKEADAALGR-ANITVNKNSVPNDPKSPF-VTSGI 365 (420)
T ss_dssp HHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGT----------CCHHHHHHHHHH-TTEECEEECCTTCSSCTT-TCSEE
T ss_pred HHHHHHHHhc-CCeeccCCCCCeEEEEEcCCCC----------CCHHHHHHHHHH-CCcEeccccCCCCccccC-CCcce
Confidence 9999999885 8887754 45667888775421 156677777764 5999988 3333 24569
Q ss_pred EEEeec------CHHHHHHHHHHHHHHHhhh
Q 018665 322 RISYAA------SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 322 Ri~~~~------~~~~l~~~~~~l~~~~~~~ 346 (352)
|++++. ++++++++++.|++++++.
T Consensus 366 Ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 366 RIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp EEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred EEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 999974 4799999999999998764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-28 Score=223.04 Aligned_cols=289 Identities=13% Similarity=0.134 Sum_probs=203.7
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc---C-----------CCCEEEecCCCCCChHHHH-H-------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC---S-----------PGDEVIIPAPFWVSYPEMA-R------- 78 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~-----------~~~~vl~~~~~~~~~~~~~-~------- 78 (352)
+.+++++ + ....++|++++|+++|++.+++.+. + ++++|++.+|.|+++...+ .
T Consensus 108 ~~la~~~---~-~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~ 183 (449)
T 2cjg_A 108 ETFARVL---G-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPT 183 (449)
T ss_dssp HHHHHHH---C-CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHH
T ss_pred HHHHHhc---C-CCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchh
Confidence 5555554 2 1357899999999999999987543 2 2789999999998765422 1
Q ss_pred -hcCC-----eEEEecccCCCCc--------ccCHHHHHhhcc---CCeeEEEEcCCCCCcc-cCCCHHHHHHHHHHHHh
Q 018665 79 -IADA-----TPVILPTRISENF--------LLDPKVLESKLT---EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAK 140 (352)
Q Consensus 79 -~~g~-----~v~~i~~~~~~~~--------~~d~~~l~~~l~---~~~~~i~i~~p~nptG-~~~~~~~l~~l~~~~~~ 140 (352)
..+. ++..+|.++.... ..++++|++.++ +++++|+++.++||+| ..++.+++++|.++|++
T Consensus 184 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 263 (449)
T 2cjg_A 184 ITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDE 263 (449)
T ss_dssp HHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHH
T ss_pred hcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHH
Confidence 1222 5566665420011 246677888884 5677777666679999 58899999999999999
Q ss_pred CCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHH-----HhhhhccccC
Q 018665 141 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC-----NKIQSQFTSG 215 (352)
Q Consensus 141 ~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~-----~~~~~~~~~~ 215 (352)
+ |+++|+||+|+++.+.|.. ..+..... .++ +.|+||.+ |+|++++++++++.+ .......+++
T Consensus 264 ~-g~lli~DEv~~g~g~~g~~-~~~~~~~~-~~d---i~t~sK~l-----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~ 332 (449)
T 2cjg_A 264 F-DALLIFDEVQTGCGLTGTA-WAYQQLDV-APD---IVAFGKKT-----QVCGVMAGRRVDEVADNVFAVPSRLNSTWG 332 (449)
T ss_dssp T-TCEEEEECTTTTTTTTSSS-STHHHHTC-CCS---EEEECGGG-----SSEEEEECGGGGGSTTCTTTSTTSSCCSSS
T ss_pred C-CcEEEEeccccCCCccCcc-eeecccCC-Cce---EEEecCcc-----cEEEEEECHHHhhhhhhcccCCcccccCCC
Confidence 9 9999999999988776642 12111111 122 34788987 689999999887752 2223335677
Q ss_pred CChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc----CC-ceecCCCCceEEEeecCCccCCcccCCCC
Q 018665 216 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGK 290 (352)
Q Consensus 216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 290 (352)
.|++.+.++.++++.. .+ +++.++++++++++.+.|+++ +. +....+.+. ++++++++..
T Consensus 333 ~n~~~~~aa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~-~~~~~~~~~~--------- 397 (449)
T 2cjg_A 333 GNLTDMVRARRILEVI---EA--EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGL-MCAFSLPTTA--------- 397 (449)
T ss_dssp SCHHHHHHHHHHHHHH---HH--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETT-EEEEECSSHH---------
T ss_pred CCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccE-EEEEEECChH---------
Confidence 8999999999998741 11 345667777777888777653 44 545554444 4667876421
Q ss_pred CCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 291 IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 291 ~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+..++.+.|.++ ||.+.+++ ++++|++++. +++++++++++|+++++++
T Consensus 398 --~~~~~~~~l~~~-Gv~v~~~g----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 398 --DRDELIRQLWQR-AVIVLPAG----ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp --HHHHHHHHHHHT-TEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHC-CeEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 467899999865 99999863 5899998765 9999999999999998764
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=217.58 Aligned_cols=280 Identities=12% Similarity=0.037 Sum_probs=200.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEE-eCChHHHHHHHHHHhcCCCCEEEecCCCCCC-hHHHHHhc--CCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILV-SNGAKQSILQAVLAVCSPGDEVIIPAPFWVS-YPEMARIA--DATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~-~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~-~~~~~~~~--g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ .+ .+++|++ |+|+++++..++.+++++| .+.+..+.|.. ....+... |.+++.++++ .+..
T Consensus 85 ~~la~~~g---~~-~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~ 157 (398)
T 2fyf_A 85 SGLAELFS---LP-DGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSA 157 (398)
T ss_dssp HHHHHHTT---CC-TTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCC
T ss_pred HHHHHHhC---CC-CCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCC
Confidence 66666664 32 2468998 9999999999999998876 23333333321 12245555 8888888876 2322
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
.+. .+++++++|++++|+||||.++|.+ +|.++ + |+++|+|++|+.+.. +..+. +.++
T Consensus 158 ~~~-----~i~~~~~~v~~~~~~nptG~~~~~~---~i~~~---~-~~~vivD~a~~~~~~----~~~~~------~~di 215 (398)
T 2fyf_A 158 PEP-----QTDPSVDVIAWAHNETSTGVAVAVR---RPEGS---D-DALVVIDATSGAGGL----PVDIA------ETDA 215 (398)
T ss_dssp CCC-----CCCTTCSEEEEESEETTTTEECCCC---CCTTC---C--CEEEEECTTTTTTS----CCCGG------GCSE
T ss_pred CCc-----cccCCCCEEEEeCcCCCcceecchH---Hhhhh---c-CCeEEEEeccccCCc----ccCcc------cCcE
Confidence 332 2566899999999999999999944 44443 8 999999999986421 11111 2348
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHhhh---------------------hccccCCChHHHHHHHHHhcccCCCh
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
++.|+||.+|++| ++|++++++++++.+.+.. .....+++...+.++.++++. ..
T Consensus 216 ~~~s~sK~~~~~g-g~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~---~~ 291 (398)
T 2fyf_A 216 YYFAPQKNFASDG-GLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDW---LV 291 (398)
T ss_dssp EEECTTSTTCSCS-SEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH---HH
T ss_pred EEEecCcccCCCC-ceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HH
Confidence 8999999998664 6999999999888774321 112245667777777777764 12
Q ss_pred HH--HHHHHHHHHHHHHHHHHHhcccCCceecC--C--CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 236 EV--VSKMVKAFRERRDFLVKSFGELEGVKMSE--P--QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 236 ~~--~~~~~~~~~~~~~~l~~~l~~~~g~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
+. +++..++++++++++.+.|++++|+++.. + .+++++++++|+.. +..++.+.|.++ ||.+
T Consensus 292 ~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~-gI~v 359 (398)
T 2fyf_A 292 GNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDV-----------DAGTVAKILRAN-GIVD 359 (398)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTS-----------CHHHHHHHHHHT-TCBC
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCC-----------CHHHHHHHHHHC-CcEE
Confidence 22 78888999999999999999888888773 4 34547888886532 788999999977 9999
Q ss_pred ccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 310 VPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 310 ~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
.+|.....++++||+++. +++|++++++.|++++++
T Consensus 360 ~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 360 TEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp CSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred ecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 886332235799999995 899999999999998865
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=227.12 Aligned_cols=290 Identities=13% Similarity=0.078 Sum_probs=203.5
Q ss_pred CCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeE
Q 018665 5 RVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 84 (352)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v 84 (352)
.+.....+++ +.+|+ ++ .+ +++++++|+++++..++.+++++||+|+++.++|.++...+...|.++
T Consensus 54 ~~~~~~~~~~------~~la~-~g-----~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~ 120 (446)
T 2x3l_A 54 HPEEVILKSM------KQVEK-HS-----DY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEG 120 (446)
T ss_dssp SCSSHHHHHH------HHHCS-CT-----TE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCE
T ss_pred CcchHHHHHH------HHHHh-cC-----CC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeE
Confidence 3444555667 88887 75 33 789999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCC----cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc-cccCC
Q 018665 85 VILPTRISEN----FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAP 159 (352)
Q Consensus 85 ~~i~~~~~~~----~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~-~~~~~ 159 (352)
++++...+.+ +.+|++.| +.++++++++++ +|++|.+.| +++|+++|+++ |+++|+||+|+. +.+.+
T Consensus 121 ~~v~~~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~-~~~livDea~~~~~~f~~ 192 (446)
T 2x3l_A 121 HFIETHQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQL-NIPVLIDEAHGAHFGLQG 192 (446)
T ss_dssp EECEEEECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCC---HHHHHHHHHHT-TCCEEEECTTCTTTTSTT
T ss_pred EEEeCeeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhc-CCeEEEcchhhhhhccCC
Confidence 9999832232 45788887 456789999988 555999999 89999999999 999999999986 33433
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHH--HHHhhh-hccccCCChHHHHHHHHHhcccCCChH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA--ACNKIQ-SQFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
. +.+..... ..+++.|+||.++ ++.++|++++++++++ .+.... ...+.+++.....++.++++.. ...
T Consensus 193 ~-~~~~~~~g----~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l--~~~ 264 (446)
T 2x3l_A 193 F-PDSTLNYQ----ADYVVQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFY--KTY 264 (446)
T ss_dssp S-CCCGGGGT----CSEEEECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH--HHC
T ss_pred C-CCChHHcC----CCEEEECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH--HHh
Confidence 3 23333222 3499999999765 4456899998877654 333221 2233455555554444443320 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec-cCCCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAF 315 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~-~g~~~ 315 (352)
..+++.++.+++.+.+++. ++.+..+..+.++++.+++. ++.++.+.|.++ ||.+. +|
T Consensus 265 g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~~~------------~~~~l~~~L~~~-GI~v~~~g--- 323 (446)
T 2x3l_A 265 DSTLFFAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYEGF------------TGHDIQNWFMNA-HIYLELAD--- 323 (446)
T ss_dssp CCHHHHHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECTTS------------CHHHHHHHHHHT-TEEESEEC---
T ss_pred CHHHHHHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeCCc------------CHHHHHHHHHHC-CCEEEecC---
Confidence 1122444555555555554 66666555555688887632 788999999887 99987 43
Q ss_pred CCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 316 GDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 316 ~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
.+++|++++. +++++ ++++.|+++++.+.
T Consensus 324 --~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 324 --DYQALAILPLWHHDDTY-LFDSLLRKIEDMIL 354 (446)
T ss_dssp --SSCEEEECCCCCTTCCC-CHHHHHHHHHTCCC
T ss_pred --CCEEEEEeecCCCHHHH-HHHHHHHHHHHhhc
Confidence 4689999987 88899 99999999987764
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=222.93 Aligned_cols=295 Identities=14% Similarity=0.113 Sum_probs=211.2
Q ss_pred HHHHHHHH-hcCCCCCC--CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH--------HHhcC--CeEEEe
Q 018665 21 QQFVINLK-ENGLSYTP--DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM--------ARIAD--ATPVIL 87 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~--~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~--------~~~~g--~~v~~i 87 (352)
+.+.+++. .+|.+.+. .+|++++|+ +++..++.+++++||+|+++++.|.++... +...| .+++.+
T Consensus 93 ~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~ 171 (483)
T 1rv3_A 93 TLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAY 171 (483)
T ss_dssp HHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEE
T ss_pred HHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEEC
Confidence 66666666 55654221 347777777 888888999999999999999998887642 22333 445555
Q ss_pred cccCCCCcccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCCCcccc
Q 018665 88 PTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSF 165 (352)
Q Consensus 88 ~~~~~~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~~~~~~ 165 (352)
++++ .++.+|+++|+++++ +++++|++ +++|++ .+.| +++|.++|+++ |+++|+|++|+ ++.+.+....++
T Consensus 172 ~~~~-~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~-g~~livD~ah~~g~~~~~~~~~p~ 244 (483)
T 1rv3_A 172 KVNP-DTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLD---YGRLRKIADEN-GAYLMADMAHISGLVVAGVVPSPF 244 (483)
T ss_dssp CBCT-TTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCGG
T ss_pred cccc-CCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHc-CCEEEEEccchhcccccCCCCCCC
Confidence 4443 456799999999998 78999998 888888 8888 99999999999 99999999987 333333222222
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEEcChh---------------HHHHHHhhhh-ccccCCChHHHHHHHHHhc
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH---------------FVAACNKIQS-QFTSGASSISQKAGVAALG 229 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~---------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 229 (352)
. ..++++.|+||++ .|+|.|+++++++ +.+.+..... ....+++...+.++..++.
T Consensus 245 ~------~~div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~ 316 (483)
T 1rv3_A 245 E------HCHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK 316 (483)
T ss_dssp G------TCSEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH
T ss_pred C------CCcEEEecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHH
Confidence 1 2348899999987 5678899998874 3334433211 1133455555666666665
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC-CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE
Q 018665 230 LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308 (352)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 308 (352)
.. ...++++..++++++++++.+.|+++ |+.+..+. ..+++++.++... .+..++.+.|.+ .||.
T Consensus 317 ~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~g----------~~~~~~~~~L~~-~gI~ 382 (483)
T 1rv3_A 317 QA--MTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSKG----------TDGGRAEKVLEA-CSIA 382 (483)
T ss_dssp HH--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGGT----------CCHHHHHHHHHH-TTEE
T ss_pred HH--hChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccCCC----------CCHHHHHHHHHh-CCcE
Confidence 42 13567888999999999999999988 88887653 3456778875321 167778777665 5999
Q ss_pred ec----cCCCCC-CCCeEEEEeec--C----HHHHHHHHHHHHHHHhh
Q 018665 309 LV----PGDAFG-DDTCIRISYAA--S----LTTLQAAVERIKKGLLT 345 (352)
Q Consensus 309 i~----~g~~~~-~~~~iRi~~~~--~----~~~l~~~~~~l~~~~~~ 345 (352)
+. ||..+. .++++||+++. + ++|++++++.|+++++.
T Consensus 383 v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 383 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 98 876321 35799999986 5 89999999999998875
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-27 Score=214.41 Aligned_cols=278 Identities=10% Similarity=0.068 Sum_probs=195.7
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g~~v~~i~~~~~~~~~ 96 (352)
+.+|++++ .++.++++|+++|++.++.+++++||+|+++.+.|.+....+ +..|+++.+++.+
T Consensus 89 ~~lA~l~g-------~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~------ 155 (415)
T 2fq6_A 89 QAMCELEG-------GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL------ 155 (415)
T ss_dssp HHHHHHHT-------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT------
T ss_pred HHHHHHhC-------CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC------
Confidence 99999985 346777799999999999999999999999999999887654 4679999999753
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh--CCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~--~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
|+++|++++++++++|++++|+||+|.++| +++|+++|++ + |+++|+|++|+.... ..++ . .+.
T Consensus 156 -d~~~le~ai~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~-g~~livD~a~a~~~~----~~p~-~----~g~ 221 (415)
T 2fq6_A 156 -IGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVP-DAIIMIDNTWAAGVL----FKAL-D----FGI 221 (415)
T ss_dssp -CGGGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCT-TCEEEEECTTTTTTS----SCGG-G----GTC
T ss_pred -CHHHHHHhhccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcC-CCEEEEECCCccccc----CCcc-c----cCC
Confidence 789999999999999999999999999999 9999999999 9 999999999875321 1122 1 345
Q ss_pred eEEEeccccccccccce-eEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~-~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
++++.|++|.+|.+|.+ .|++++++++++.+.......+...++.....+...+ +.+....++..++...+.
T Consensus 222 Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l-------~~l~~r~~~~~~n~~~l~ 294 (415)
T 2fq6_A 222 DVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGL-------RTLGVRLRQHHESSLKVA 294 (415)
T ss_dssp SEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHH
Confidence 69999999999866644 6999999888888876654444445555444443333 334455555666777777
Q ss_pred HHhcccCCceec-CC----------------CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCC--
Q 018665 254 KSFGELEGVKMS-EP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA-- 314 (352)
Q Consensus 254 ~~l~~~~g~~~~-~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~-- 314 (352)
+.|++.|.+..+ .| ..+.++++.+++..+ ..+...+.+.|. ..++.+..|+.
T Consensus 295 ~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~--------~~~~~~~l~~l~-~~~~a~s~G~~~s 365 (415)
T 2fq6_A 295 EWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLN--------NEELANYLDNFS-LFSMAYSWGGYES 365 (415)
T ss_dssp HHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCC--------HHHHHHHHTTCS-SCEECSCCCSSSC
T ss_pred HHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCC--------HHHHHHHHHhCC-cCeEeccCCCCce
Confidence 777765544321 11 135567777764200 002334444332 23455544422
Q ss_pred ------------------CC-CCCeEEEEeec--CHHHHHHHHHHHHH
Q 018665 315 ------------------FG-DDTCIRISYAA--SLTTLQAAVERIKK 341 (352)
Q Consensus 315 ------------------~~-~~~~iRi~~~~--~~~~l~~~~~~l~~ 341 (352)
.+ .++.+|+|++. ++++++.+.+.|++
T Consensus 366 ~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 366 LILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp EEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred eEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 11 24689999998 55667777666653
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-27 Score=214.00 Aligned_cols=282 Identities=15% Similarity=0.107 Sum_probs=200.2
Q ss_pred CCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCCe
Q 018665 8 QGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADAT 83 (352)
Q Consensus 8 ~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~~ 83 (352)
+...+++ +.+|++++ .+..++++++++|+..++.+++++||+|+++.++|.++.. .++..|.+
T Consensus 82 p~~~~le------~~lA~l~g-------~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 148 (430)
T 3ri6_A 82 PTVEDLE------QRLKNLTG-------ALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIE 148 (430)
T ss_dssp HHHHHHH------HHHHHHHT-------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCE
T ss_pred HHHHHHH------HHHHHHHC-------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCE
Confidence 4445566 99999885 3446777788899999999999999999999999998887 66789999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
++.++.+ |++++++++++++++|++++|+||+|.+.+ +++|+++|+++ |+++|+|++++.... ..
T Consensus 149 ~~~v~~~-------d~~~l~~ai~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~-g~~livD~a~~~~~~----~~ 213 (430)
T 3ri6_A 149 VRFVDVM-------DSLAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAK-GIPLVVDTTMTPPYL----LE 213 (430)
T ss_dssp EEEECTT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTSCTTT----CC
T ss_pred EEEeCCC-------CHHHHHHhhCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCccccc----CC
Confidence 9999864 899999999999999999999999999999 88999999999 999999999875321 11
Q ss_pred ccccCCCCCCceEEEeccccccccccceeEEEEc---ChhH------------------HHHHHh-hhhccccCCChHHH
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKHF------------------VAACNK-IQSQFTSGASSISQ 221 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~---~~~~------------------~~~~~~-~~~~~~~~~~~~~~ 221 (352)
+. ..+.++++.|++|.+|.+|..+|.+++ +..+ +..+.. .....+...+++..
T Consensus 214 ~~-----~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a 288 (430)
T 3ri6_A 214 AK-----RLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNA 288 (430)
T ss_dssp GG-----GGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHH
T ss_pred hH-----HcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHH
Confidence 11 134569999999999755555454443 2222 222221 12223334455444
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceec-CCC----------------CceEEEeecCCccCCc
Q 018665 222 KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQ----------------GAFYLFIDFSTYYGSE 284 (352)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~----------------~g~~~~~~~~~~~~~~ 284 (352)
..+... .+.+....++..++...+.+.|++.|++..+ .|. +|+++++++++..
T Consensus 289 ~l~l~~-------l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~--- 358 (430)
T 3ri6_A 289 YLQSLG-------LETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKE--- 358 (430)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHH---
T ss_pred HHHHhh-------hhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHH---
Confidence 433333 3445666677788888999999988887643 333 4547899987421
Q ss_pred ccCCCCCCChHHHHHHHHHccCEEeccCCCCC-----------------------CCCeEEEEeecCHHHHHHHHHHHHH
Q 018665 285 AEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----------------------DDTCIRISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-----------------------~~~~iRi~~~~~~~~l~~~~~~l~~ 341 (352)
++.++.+.|. -.++.+.+|+.+. .+++||||++. |+.+.+++.|+.
T Consensus 359 --------~~~~~~~~l~-~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~--E~~~dl~~dl~~ 427 (430)
T 3ri6_A 359 --------ASYRFMDALK-LIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI--EEIEDLKEDILQ 427 (430)
T ss_dssp --------HHHHHHHHCS-SSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS--SCHHHHHHHHHH
T ss_pred --------HHHHHHHhCC-cceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHH
Confidence 4566666654 3466677776543 24689999998 344455555555
Q ss_pred HH
Q 018665 342 GL 343 (352)
Q Consensus 342 ~~ 343 (352)
++
T Consensus 428 al 429 (430)
T 3ri6_A 428 AL 429 (430)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=212.13 Aligned_cols=302 Identities=18% Similarity=0.159 Sum_probs=209.3
Q ss_pred cCCCCC--ChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhc
Q 018665 4 VRVSQG--TLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 4 y~~~~~--~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
|.+..| ..++| +.+|++++ .+++++++|+++++..++.++ .++||+|+++.|+|.++...++..
T Consensus 26 ~~~~~g~~~~~l~------~~la~~~~-------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~ 92 (394)
T 1o69_A 26 YIAPLGEFVNRFE------QSVKDYSK-------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYL 92 (394)
T ss_dssp TTSCTTHHHHHHH------HHHHHHHC-------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHT
T ss_pred CccCCChHHHHHH------HHHHHHhC-------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHc
Confidence 555456 77888 99999985 379999999999999999999 899999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccc
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HII 156 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~ 156 (352)
|.+++.++++ .++.+|+++|++++++ ++++|++++ |+|...+ +++|.++|+++ |+++|+|++|+ ++.
T Consensus 93 g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~ 163 (394)
T 1o69_A 93 KAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAK---MDEIVEICKEN-DIVLIEDAAEALGSF 163 (394)
T ss_dssp TCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC---HHHHHHHHHHT-TCEEEEECTTCTTCE
T ss_pred CCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhh---HHHHHHHHHHc-CCEEEEECcCcccce
Confidence 9999999987 4567899999999876 688888875 8998888 99999999999 99999999998 554
Q ss_pred cCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhhccccC--------------CChHHH
Q 018665 157 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSG--------------ASSISQ 221 (352)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~~~~--------------~~~~~~ 221 (352)
+.+.. ...+ .+.++...|.+|.+ +|.++|+++++ +++++.+.......... ++....
T Consensus 164 ~~~~~---~~~~---~~~~~~s~s~~K~l--~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a 235 (394)
T 1o69_A 164 YKNKA---LGTF---GEFGVYSYNGNKII--TTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLG 235 (394)
T ss_dssp ETTEE---TTSS---SSEEEEECCTTSSS--CCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHH
T ss_pred eCCcc---cccc---cCcEEEEEeCCccC--CCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHH
Confidence 43321 1111 12223344446766 45689999995 78888887653222111 222222
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC----Cce-EEEeecCCcc----------CCccc
Q 018665 222 KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAF-YLFIDFSTYY----------GSEAE 286 (352)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~----~g~-~~~~~~~~~~----------~~~~~ 286 (352)
.++...+ +++++..++.+++++++.+.|+++ +.+..+. .++ ++++.++... +....
T Consensus 236 a~~l~~l-------~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 306 (394)
T 1o69_A 236 AIGVAQM-------EVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQK 306 (394)
T ss_dssp HHHHHHH-------TTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCC
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhcccccccccccccc
Confidence 2222222 335667788888999999999875 5554332 233 3556665310 00000
Q ss_pred CCCCCCChHHHHHHHHHccCEEeccCCCCC------CC--------------CeEEEEeec--CHHHHHHHHHHHHHHHh
Q 018665 287 GFGKIENSESLCRYLLDKAQVALVPGDAFG------DD--------------TCIRISYAA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 287 ~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~------~~--------------~~iRi~~~~--~~~~l~~~~~~l~~~~~ 344 (352)
+.....+..++.+.|.++ ||.+.++..+. .. ..+|+.... +++|++++++.|++++.
T Consensus 307 ~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 307 NITLHPKISKLIEDLKNK-QIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp CCCCCHHHHHHHHHHHHT-TCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ccccccCHHHHHHHHHHc-CCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 000000467888888865 99999884320 00 234444444 89999999999998875
Q ss_pred h
Q 018665 345 T 345 (352)
Q Consensus 345 ~ 345 (352)
.
T Consensus 386 ~ 386 (394)
T 1o69_A 386 A 386 (394)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=208.80 Aligned_cols=287 Identities=16% Similarity=0.225 Sum_probs=212.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
+|++.++..+++ +.++++++ .+++++++|+++|+..++.++ .++||+|+++.++|.++...++..|
T Consensus 30 ~~~~~~~~~~l~------~~la~~~~-------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~~~G 96 (367)
T 3nyt_A 30 QYILGPEVTELE------DRLADFVG-------AKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALLG 96 (367)
T ss_dssp CCSSCHHHHHHH------HHHHHHHT-------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTT
T ss_pred CccCChHHHHHH------HHHHHHhC-------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHcC
Confidence 466677778888 99999985 348999999999999999999 8899999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc-ccCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI-IYAPA 160 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~-~~~~~ 160 (352)
.+++.+++++ +++.+|++++++++++++++|+ |+||+|...+ +++|.++|+++ |+++|+|++|+.. .+.+.
T Consensus 97 ~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~---~~~i~~la~~~-~~~li~D~a~~~g~~~~~~ 168 (367)
T 3nyt_A 97 AKPVYVDIDP-RTYNLDPQLLEAAITPRTKAII---PVSLYGQCAD---FDAINAIASKY-GIPVIEDAAQSFGASYKGK 168 (367)
T ss_dssp CEEEEECBCT-TTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHT-TCCBEEECTTTTTCEETTE
T ss_pred CEEEEEecCC-ccCCcCHHHHHHhcCcCCcEEE---eeCCccChhh---HHHHHHHHHHc-CCEEEEECccccCCeECCe
Confidence 9999999875 3367899999999988888877 7889999988 99999999999 9999999999742 22221
Q ss_pred CccccccCCCCCCceEEEecc--ccccccccceeEEEEc-ChhHHHHHHhhhhc------------cccCCChHHHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ------------FTSGASSISQKAGV 225 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~--sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 225 (352)
.+... + ++++.|| +|.+|..|. .|+++. ++++.+.+...... ++...+.+..+++.
T Consensus 169 ---~~~~~----~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~ 239 (367)
T 3nyt_A 169 ---RSCNL----S-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILL 239 (367)
T ss_dssp ---ETTSS----S-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHH
T ss_pred ---eccCC----C-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHH
Confidence 11111 1 4888886 899984475 788887 56777777654331 23456666665555
Q ss_pred HHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC-C---ce-EEEeecCCccCCcccCCCCCCChHHHHHH
Q 018665 226 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-G---AF-YLFIDFSTYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~---g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
..++. +++..++.+++.+++.+.|+++ ++.+.... . .+ .+.+.++ +.+++.+.
T Consensus 240 ~~l~~-------~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~ 297 (367)
T 3nyt_A 240 PKLEI-------FEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD--------------NRESVQAS 297 (367)
T ss_dssp HHHHT-------HHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS--------------SHHHHHHH
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC--------------CHHHHHHH
Confidence 55542 3555666677778888888876 44443221 1 11 1223332 57788888
Q ss_pred HHHccCEEeccCCCC--------C--C----------CCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 301 LLDKAQVALVPGDAF--------G--D----------DTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 301 l~~~~gi~i~~g~~~--------~--~----------~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
|.++ ||.+.++... . . ...+|+++.. +++|+++.++.|++.
T Consensus 298 L~~~-GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 298 LKAA-GVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHH-TCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHC-CCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 8876 8988765420 0 0 1368999887 999999999988754
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=209.99 Aligned_cols=294 Identities=17% Similarity=0.204 Sum_probs=211.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
+|++.++..++| +.++++++ .+++++++|+++|+..++.++ .++||+|+++.++|.++...++..|
T Consensus 31 ~~~~~~~~~~l~------~~la~~~~-------~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g 97 (373)
T 3frk_A 31 WFILGDEDKKFE------QEFADYCN-------VNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVSYTG 97 (373)
T ss_dssp CCSSSHHHHHHH------HHHHHHHT-------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHHHHS
T ss_pred CccCCchHHHHH------HHHHHHhC-------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcC
Confidence 466777788899 99999985 358999999999999999999 8999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc-cCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPA 160 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~-~~~~ 160 (352)
.+++.+++++ .++.+|+++|++++++++++|+ |+||+|...+ +++|.++|+++ |+++|+|++|+... +++.
T Consensus 98 ~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~---l~~i~~l~~~~-~~~li~D~a~~~g~~~~~~ 169 (373)
T 3frk_A 98 AKPIFVEPDI-RTYNIDPSLIESAITEKTKAII---AVHLYGQPAD---MDEIKRIAKKY-NLKLIEDAAQAHGSLYKGM 169 (373)
T ss_dssp CEEEEECEET-TTTEECGGGTGGGCCTTEEEEE---EECCTTCCCC---HHHHHHHHHHH-TCEEEEECTTCTTCEETTE
T ss_pred CEEEEEeccc-cccCcCHHHHHHhcCCCCeEEE---EECCCcCccc---HHHHHHHHHHc-CCEEEEECCcccCCEECCE
Confidence 9999999874 3467899999999998888887 7789999999 89999999999 99999999998532 2221
Q ss_pred CccccccCCCCCCceEEEeccc--cccccccceeEEEEcC-hhHHHHHHhhhhcc------------ccCCChHHHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQSQF------------TSGASSISQKAGV 225 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~s--K~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 225 (352)
.+... .++++.|++ |.++..| +.|+++++ +.+++.+....... ++..+.+..++..
T Consensus 170 ---~~~~~-----~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~ 240 (373)
T 3frk_A 170 ---KVGSL-----GDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLR 240 (373)
T ss_dssp ---ETTSS-----SSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHH
T ss_pred ---ecccc-----ccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHH
Confidence 11111 237788876 9987325 37888875 45767666543211 1223443333322
Q ss_pred HHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 226 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
.. .+.+++..++.+++.+++.+.|++++ +.+... ......+..++-.. .+..++.+.|.++
T Consensus 241 ~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~L~~~ 302 (373)
T 3frk_A 241 VK-------LKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS----------EKRDELQKYLNNN 302 (373)
T ss_dssp HH-------HHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE----------SSHHHHHHHHHHT
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe----------CCHHHHHHHHHHC
Confidence 22 23356677778888889999998874 554322 11111111111100 1678899998876
Q ss_pred cCEEeccCCCCCC----------------C-------CeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 305 AQVALVPGDAFGD----------------D-------TCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 305 ~gi~i~~g~~~~~----------------~-------~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
||.+.++..... + +.+|+++.. +++|++++++.|++...+
T Consensus 303 -gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 303 -GIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp -TBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred -CCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 999886541100 1 579999987 999999999999876543
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=211.57 Aligned_cols=278 Identities=14% Similarity=0.102 Sum_probs=190.4
Q ss_pred EEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC---hHHHHHhcCC--eEEEecccCCCCcccCHHHHHhhcc-CCeeEE
Q 018665 40 LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS---YPEMARIADA--TPVILPTRISENFLLDPKVLESKLT-EKSRLL 113 (352)
Q Consensus 40 ~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~---~~~~~~~~g~--~v~~i~~~~~~~~~~d~~~l~~~l~-~~~~~i 113 (352)
++++|+++++..++.+++++||+|+++.|+|.+ +.......|. .++.++.+. +++.+|+++|+++++ +++++|
T Consensus 98 v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v 176 (425)
T 3ecd_A 98 VQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR-DTMLIDYDQVEALAQQHKPSLI 176 (425)
T ss_dssp CCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCT-TTSSCCHHHHHHHHHHHCCSEE
T ss_pred eecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCc-ccCccCHHHHHHHHhhcCCcEE
Confidence 458899999999999999999999999999987 2222223444 555565543 346799999999996 589999
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCCCccccccCCCCCCceEEEecccccccccccee
Q 018665 114 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 192 (352)
Q Consensus 114 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~ 192 (352)
++++|+|| ...+ +++|.++|+++ |+++|+||+|+ ++.+.+.....+. ..++++.|+||.+ +|.|.
T Consensus 177 ~~~~~~~~--~~~~---l~~i~~l~~~~-~~~li~De~~~~g~~~~~~~~~~~~------~~di~~~s~sK~l--~g~~~ 242 (425)
T 3ecd_A 177 IAGFSAYP--RKLD---FARFRAIADSV-GAKLMVDMAHIAGVIAAGRHANPVE------HAHVVTSTTHKTL--RGPRG 242 (425)
T ss_dssp EEECSCCC--SCCC---HHHHHHHHHHH-TCEEEEECGGGHHHHHTTSSCCGGG------TCSEEEEESSGGG--CCCSC
T ss_pred EEccccCC--CcCC---HHHHHHHHHHc-CCEEEEECcChHhhhhcccccCchh------cCcEEEecCCccc--CCCCc
Confidence 99989885 4556 89999999999 99999999965 3333332222211 1238899999998 56688
Q ss_pred EEEEcC-hhHHHHHHhhhhcc-ccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC-CC
Q 018665 193 GYIAGP-KHFVAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QG 269 (352)
Q Consensus 193 g~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~ 269 (352)
||++++ +.+.+.+....... ..+++...+.++..++... ..+++++..++++++++++.+.|++. |+.+..+ ..
T Consensus 243 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 319 (425)
T 3ecd_A 243 GFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEA--LTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTD 319 (425)
T ss_dssp EEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCS
T ss_pred EEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCC
Confidence 999988 56767666543322 2234554555555444321 13567788889999999999999886 8887754 46
Q ss_pred ceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec----cCCCC--CCCCeEEEEeec------CHHHHHHHHH
Q 018665 270 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDAF--GDDTCIRISYAA------SLTTLQAAVE 337 (352)
Q Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~----~g~~~--~~~~~iRi~~~~------~~~~l~~~~~ 337 (352)
++++++.++... .+...+.+.|.+ .||.+. |+... ..++++|++++. ++++++++++
T Consensus 320 ~~~~~~~~~~~~----------~~~~~~~~~l~~-~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~ 388 (425)
T 3ecd_A 320 NHLLLVDLRPKG----------LKGAQVEQALER-AGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGR 388 (425)
T ss_dssp SSEEEEECGGGT----------CCHHHHHHHHHH-TTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHH
T ss_pred ceEEEEEeCCCC----------CCHHHHHHHHHH-cCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHH
Confidence 677888876421 156777777765 499998 44221 124689999654 3799999999
Q ss_pred HHHHHHhhh
Q 018665 338 RIKKGLLTL 346 (352)
Q Consensus 338 ~l~~~~~~~ 346 (352)
.|++++++.
T Consensus 389 ~l~~~l~~~ 397 (425)
T 3ecd_A 389 LILEVFEAL 397 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999998765
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=215.35 Aligned_cols=309 Identities=14% Similarity=0.115 Sum_probs=217.1
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC--------CC-----C-EEEecCCCCCChHHHHHhcCC---
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS--------PG-----D-EVIIPAPFWVSYPEMARIADA--- 82 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~~-----~-~vl~~~~~~~~~~~~~~~~g~--- 82 (352)
+.+.+++. ..|.+.+.+++++++|+|+++..++.++.. +| + .|+++.+.|.++...++..|.
T Consensus 135 ~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~ 214 (504)
T 2okj_A 135 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTD 214 (504)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCcc
Confidence 66656655 455543378999999999999999888742 34 5 799999999999999998887
Q ss_pred eEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 156 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~ 156 (352)
+++.+|++ .++.+|+++|++++++ ++++|++++++||+|.+.| +++|+++|+++ |+++++|++|+++.
T Consensus 215 ~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~-g~~lhvD~a~~~~~ 288 (504)
T 2okj_A 215 NVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKY-NLWLHVDAAWGGGL 288 (504)
T ss_dssp GEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHH-TCEEEEEETTGGGG
T ss_pred cEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHc-CCEEEEehhhhhHH
Confidence 89999986 4567999999999975 5889999999999999999 99999999999 99999999999865
Q ss_pred cCCCCc-cccccCCCCCCceEEEeccccccccccceeEEEEcCh-hHHHHHHhhhhcccc--------------------
Q 018665 157 YAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFTS-------------------- 214 (352)
Q Consensus 157 ~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~~~~~~~~~~~~~-------------------- 214 (352)
+..... ..+..+ ...++++.|++|+++ .+.++|++++++ ++++........+..
T Consensus 289 ~~~~~~~~~~~g~---~~~D~i~~~~hK~~~-~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (504)
T 2okj_A 289 LMSRKHRHKLNGI---ERANSVTWNPHKMMG-VLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCG 364 (504)
T ss_dssp GGCTTTGGGGTTG---GGCSEEEECTTSTTC-CCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSS
T ss_pred HhCHhhHhhcCCc---ccCCEEEECchhhcC-CCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCC
Confidence 432111 111111 123478889999997 446899999876 465543211111100
Q ss_pred -CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC---CCCceEEEeecCCccCC-----cc
Q 018665 215 -GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE---PQGAFYLFIDFSTYYGS-----EA 285 (352)
Q Consensus 215 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~---~~~g~~~~~~~~~~~~~-----~~ 285 (352)
..+.+.+.++.+++. .++++++.++..++++++.+.|+++++++++. +..+++.+...|..... .+
T Consensus 365 rr~~~l~~~a~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~ 439 (504)
T 2okj_A 365 RHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQR 439 (504)
T ss_dssp CBCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHH
T ss_pred CCccHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhh
Confidence 113455555555554 46688888899999999999999988998875 56666655444431000 00
Q ss_pred cCCCCCCChHHHHHHHHHccCEEeccCCCCCC-CCeEEEEee-c--CHHHHHHHHHHHHHHHhhh
Q 018665 286 EGFGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYA-A--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-~~~iRi~~~-~--~~~~l~~~~~~l~~~~~~~ 346 (352)
... ......++.+.|.+++.+.+.++ .+.. .+++|+++. . +++|++++++.|+++++++
T Consensus 440 ~~~-~~~~~~~l~~~L~~~G~~~~~~~-~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 440 REK-LHKVAPKIKALMMESGTTMVGYQ-PQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp HHH-HTTHHHHHHHHHHHHTSCEEEEE-EETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred HHH-HHHHHHHHHHHHHhCCcEEEEee-EECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 000 00014578888887732444322 2322 368999997 3 8899999999999988764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=217.25 Aligned_cols=289 Identities=13% Similarity=0.095 Sum_probs=183.8
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHH-hcCC-------------------eEEEecccCC
Q 018665 35 TPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMAR-IADA-------------------TPVILPTRIS 92 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~-~~g~-------------------~v~~i~~~~~ 92 (352)
..+++++++|++++++.+++.+. .+++.|++..+.|++...... ..+. .+..++.
T Consensus 108 ~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 184 (429)
T 4e77_A 108 TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY--- 184 (429)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT---
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC---
Confidence 57899999999999999998643 345789999999887764211 1111 1111111
Q ss_pred CCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccC
Q 018665 93 ENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 168 (352)
Q Consensus 93 ~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~ 168 (352)
.|++.|++++++ ++++++++..++++|... +.+++++|.++|+++ |+++|+||+|+++ ..+.. ......
T Consensus 185 ----~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~-~~lli~DEv~~g~-r~g~~-~~~~~~ 257 (429)
T 4e77_A 185 ----NDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEF-GALLIIDEVMTGF-RVALA-GAQDYY 257 (429)
T ss_dssp ----TCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH-TCEEEEEETTTBT-TTBTT-CHHHHT
T ss_pred ----CCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCc-ccCcc-hHHHhc
Confidence 278999998863 455555443344455544 466799999999999 9999999999987 54431 111111
Q ss_pred CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh---hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHH
Q 018665 169 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 245 (352)
Q Consensus 169 ~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (352)
... ++ +.|+||.++ +|+|+|++++++++++.+... ....+++.|++.+.++.++++.... ++..++..+..
T Consensus 258 ~~~-pd---i~t~sK~~~-~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~ 331 (429)
T 4e77_A 258 HVI-PD---LTCLGKIIG-GGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYETLTELT 331 (429)
T ss_dssp TCC-CS---EEEEEGGGG-TTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHHHHHHHH
T ss_pred CCC-CC---eeeeccccc-CCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 111 11 458999999 899999999999998877642 2344567899999999998875221 33344444444
Q ss_pred HHHHHHHHHHhcccCCceecCCCCceEEEeecCCccC-Cccc--CCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEE
Q 018665 246 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SEAE--GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 322 (352)
Q Consensus 246 ~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iR 322 (352)
+..++.+.+.+... ++....+..|.++++.+++... ..+. .........++.+.|.++ ||.+.++. ...+|
T Consensus 332 ~~l~~~L~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~ 405 (429)
T 4e77_A 332 DSLATGLRHAAKEE-NIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSA----FEAGF 405 (429)
T ss_dssp HHHHHHHHHHHHHT-TCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSST----TSCEE
T ss_pred HHHHHHHHHHHHhC-CCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecC----CCCEE
Confidence 44444444444333 3333334456778888765310 0000 000000236888888876 99998874 34567
Q ss_pred EEeecCHHHHHHHHHHHHHHHhh
Q 018665 323 ISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 323 i~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
++...+++++++++++|++++++
T Consensus 406 ~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 406 MSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EeccCCHHHHHHHHHHHHHHHHh
Confidence 77666999999999999999865
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=218.42 Aligned_cols=301 Identities=12% Similarity=0.102 Sum_probs=193.8
Q ss_pred CChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHH---hcCCCCEEEecCCCCCChHHHHHh-----
Q 018665 9 GTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLA---VCSPGDEVIIPAPFWVSYPEMARI----- 79 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~---l~~~~~~vl~~~~~~~~~~~~~~~----- 79 (352)
+..+++ +.+++++. ..+ ..++|++++|+++|+..++++ +.++ ++|++.+|+|+++...+..
T Consensus 94 ~~~~~~------~~la~~l~~~~~---~~~~v~~~~gg~eA~~~al~~ar~~~~~-~~vi~~~~~yhg~~~~~~~~~~~~ 163 (453)
T 2cy8_A 94 ASHPLE------VRWAERIVAAFP---SIRKLRFTGSGTETTLLALRVARAFTGR-RMILRFEGHYHGWHDFSASGYNSH 163 (453)
T ss_dssp SSCHHH------HHHHHHHHHHCT---TCSEEEEESCHHHHHHHHHHHHHHHHCC-CEEEEECC----------------
T ss_pred CCCHHH------HHHHHHHHhhCC---CCCEEEEeCCHHHHHHHHHHHHHHhhCC-CEEEEEcCCcCCCchhhHhhcCCc
Confidence 345667 99999998 443 578999999999999999988 5554 6888999999876543221
Q ss_pred ------cCC------eEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCC
Q 018665 80 ------ADA------TPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPR 143 (352)
Q Consensus 80 ------~g~------~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~ 143 (352)
.|+ .+..++. .|+++|+++++ +++++|+++..+|++|.+ .+.+++++|.++|++| |
T Consensus 164 ~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~-g 235 (453)
T 2cy8_A 164 FDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQY-G 235 (453)
T ss_dssp ------------CGGGEEEECT-------TCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHT-T
T ss_pred cCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-C
Confidence 122 1223321 38999999886 356666655556789976 4699999999999999 9
Q ss_pred EEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHh-----hhhccccCCCh
Q 018665 144 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK-----IQSQFTSGASS 218 (352)
Q Consensus 144 ~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~-----~~~~~~~~~~~ 218 (352)
+++|+||+|+++ +.+. ...+..... ..+ +.|+||.++ +|+|+|++++++++++.+.. .....++++|+
T Consensus 236 ~~lI~DEv~~g~-~~g~-~~~~~~~~~-~~d---i~s~sK~l~-~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~ 308 (453)
T 2cy8_A 236 ALFILDEVISGF-RVGN-HGMQALLDV-QPD---LTCLAKASA-GGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNP 308 (453)
T ss_dssp CEEEEECTTTTT-TTCT-THHHHHHTC-CCS---EEEEEGGGG-TTSSCEEEEECHHHHTTSSSCC---------CCCCH
T ss_pred CEEEEecCcccc-ccCc-hhhhHHhCC-CCc---EEEEChhhh-CCcceEEEechHHHHHHhccccCCCceeCCCCCCCH
Confidence 999999999977 4442 111111111 112 348999998 68999999999998877654 11233567899
Q ss_pred HHHHHHHHHhcc-cCCChHHHHHHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCC-----cc-CCcccCC
Q 018665 219 ISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFST-----YY-GSEAEGF 288 (352)
Q Consensus 219 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~-----~~-~~~~~~~ 288 (352)
+.+.++.++++. . .+++.++++++++++.+.|+++ .++....+..|.++|+++++ .. .......
T Consensus 309 ~~~aa~~aal~~~~------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 382 (453)
T 2cy8_A 309 ITAAAAIAAIDTIL------EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEV 382 (453)
T ss_dssp HHHHHHHHHHHHHH------HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCS
T ss_pred HHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEecccccccccccccccc
Confidence 999888888863 2 2334556666666666666543 13322223456678888864 10 0000000
Q ss_pred CC--CCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 289 GK--IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 289 ~~--~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
.. .....++.+.|.++ ||.+.|+ +.+|+++..+++++++++++|+++++++.
T Consensus 383 ~~~~~~~~~~l~~~l~~~-Gv~v~~~------~~~~l~~~~t~~~i~~~l~~l~~~l~~~~ 436 (453)
T 2cy8_A 383 ARPDVKMIAAMRMALILE-GVDIGGR------GSVFLSAQHEREHVEHLVTTFDRVLDRLA 436 (453)
T ss_dssp CCCCHHHHHHHHHHHHHT-TEECBTT------TEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHC-CeEEeCC------CCEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 00 00256788888875 9999653 24777765699999999999999987763
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=219.49 Aligned_cols=286 Identities=16% Similarity=0.151 Sum_probs=194.0
Q ss_pred CCCcEEEeCChHHHHHHHHHH---hcCCCCEEEecCCCCCChHHHHH--------------hcCC------eEEEecccC
Q 018665 35 TPDQILVSNGAKQSILQAVLA---VCSPGDEVIIPAPFWVSYPEMAR--------------IADA------TPVILPTRI 91 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~---l~~~~~~vl~~~~~~~~~~~~~~--------------~~g~------~v~~i~~~~ 91 (352)
..++|++++|+++|+..+++. +.+ +++|++.+++|+++...+. ..|+ ++..++.
T Consensus 111 ~~~~v~~~~sgseA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-- 187 (434)
T 2epj_A 111 RGGMIRFVNSGTEATMTAIRLARGYTG-RDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-- 187 (434)
T ss_dssp TTCEEEEESSHHHHHHHHHHHHHHHHC-CCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET--
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhC-CCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC--
Confidence 468999999999999999987 444 5788888899987543221 1232 2444442
Q ss_pred CCCcccCHHHHHhhccC---CeeEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccccc
Q 018665 92 SENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 167 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~ 167 (352)
.|+++|++++++ ++++|+++..++++|.+. +.+++++|.++|+++ |+++|+||+|+++ ..+. ......
T Consensus 188 -----~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~-~~g~-~~~~~~ 259 (434)
T 2epj_A 188 -----NDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRES-GALLILDEVVTGF-RLGL-EGAQGY 259 (434)
T ss_dssp -----TCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHH-TCEEEEEETTTTT-TSST-THHHHH
T ss_pred -----CCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEcchhce-eCCc-chhhHH
Confidence 278999998863 566666665567899866 699999999999999 9999999999976 3332 111111
Q ss_pred CCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh---hccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 168 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 168 ~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
... ..+ +.|+||.+| +|+|+|++++++++++.+.... ...+++.|++.+.++.++++. .+. +++.++
T Consensus 260 ~~~-~~d---i~s~sK~l~-~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~----~~~-~~~~~~ 329 (434)
T 2epj_A 260 FNI-EGD---IIVLGKIIG-GGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKA----LEE-EPVYSV 329 (434)
T ss_dssp HTC-CCS---EEEEEGGGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHH----HHH-SCHHHH
T ss_pred hCC-CCC---eeeecchhc-CCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHH----HHh-cCHHHH
Confidence 111 111 458999998 5899999999999887765421 234567899999888888874 111 345566
Q ss_pred HHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccC-C-CCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 245 FRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEG-F-GKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 245 ~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
++++.+++.+.|+++ .++....+..|.++++.+++.....+.. . .......++.+.|.++ ||.+.++. ..
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~ 404 (434)
T 2epj_A 330 SREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRR-GVFIAPSN----LE 404 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST----TS
T ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHC-CeEEeccC----CC
Confidence 677777777777654 1332222334566888876410000000 0 0000356788888865 99999875 23
Q ss_pred eEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 320 CIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 320 ~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
.+|+++..+++++++++++|+++++++
T Consensus 405 ~~~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 405 AVFTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp CEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred cEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 577776669999999999999998765
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=217.94 Aligned_cols=312 Identities=10% Similarity=0.024 Sum_probs=218.4
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCC-------CCcEEEeCChHHHHHHHHHHhcCC---------CC-----
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYT-------PDQILVSNGAKQSILQAVLAVCSP---------GD----- 61 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~-------~~~i~~~~g~~~a~~~~~~~l~~~---------~~----- 61 (352)
|...++..+++ +.+++++. ..|.+.. ..++++|+|+|+|+..++.++..+ ||
T Consensus 105 ~~~~~~~~~le------~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~ 178 (486)
T 1js3_A 105 WAASPACTELE------TVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGA 178 (486)
T ss_dssp GGGCHHHHHHH------HHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred cccChhHHHHH------HHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcc
Confidence 33344455666 88888887 6676532 357899999999999888775321 32
Q ss_pred ---E--EEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCe------eEEEEcCCCCCcccCCCHHH
Q 018665 62 ---E--VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS------RLLILCSPSNPTGSVYPKNL 130 (352)
Q Consensus 62 ---~--vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~------~~i~i~~p~nptG~~~~~~~ 130 (352)
+ |+++.+.|.++..+++..|.+++.+|++ .++.+|+++|++++++++ .+|++++|+||+|.+.|
T Consensus 179 ~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~--- 253 (486)
T 1js3_A 179 VLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN--- 253 (486)
T ss_dssp HHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---
T ss_pred cCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC---
Confidence 3 7889999999999999999999999985 467799999999997554 48888999999999988
Q ss_pred HHHHHHHHHhCCCEEEEecccccccccCCCCccc-cccCCCCCCceEEEeccccccccccceeEEEEcChh-H-HHHHH-
Q 018665 131 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-F-VAACN- 206 (352)
Q Consensus 131 l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~-~~~~~- 206 (352)
+++|+++|+++ |+++++|++|+++.+....... +..+ .+...++.++||+++. ..++|+++++++ . .+.+.
T Consensus 254 l~~I~~la~~~-~~~lhvD~a~g~~~~~~~~~~~~~~g~---~~adsi~~~~hK~~~~-p~~~G~l~~~~~~~l~~~~~~ 328 (486)
T 1js3_A 254 LLEVGPICHEE-DIWLHVDAAYAGSAFICPEFRHLLNGV---EFADSFNFNPHKWLLV-NFDCSAMWVKRRTDLTGAFKL 328 (486)
T ss_dssp HHHHHHHHHHT-TCEEEEECTTGGGGGGSTTTGGGGTTG---GGCSEEEECHHHHSSC-CSSCEEEEESCHHHHHGGGC-
T ss_pred HHHHHHHHHHc-CCEEEEehhhHHHHHHCHHHHHHhcCc---cccCeeEEchhhhcCC-CcceEEEEEeCHHHHHHHhcC
Confidence 99999999999 9999999999875442211111 1111 1223667889999974 478999988654 2 23221
Q ss_pred --hhh-h--c--------------cccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC-
Q 018665 207 --KIQ-S--Q--------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE- 266 (352)
Q Consensus 207 --~~~-~--~--------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~- 266 (352)
.+. . . .+.....+.+.++...+. .++++++.++..++++++.+.|+++|++++..
T Consensus 329 ~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 403 (486)
T 1js3_A 329 DPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAE 403 (486)
T ss_dssp -----------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSC
T ss_pred CchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC
Confidence 000 0 0 000122334444444442 56788889999999999999999988998875
Q ss_pred CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec---CHHHHHHHHHHHHHHH
Q 018665 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGL 343 (352)
Q Consensus 267 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~---~~~~l~~~~~~l~~~~ 343 (352)
+..++ +.+.+++.. ....++.+.|.++ |+.+..+..+...+++|+++.. ++++++++++.|++++
T Consensus 404 ~~~~~-v~f~~~~~~----------~~~~~l~~~L~~~-g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 471 (486)
T 1js3_A 404 VTLGL-VCFRLKGSD----------GLNEALLERINSA-RKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLA 471 (486)
T ss_dssp CCSSE-EEEEESSCH----------HHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CceeE-EEEEecChH----------HHHHHHHHHHHhc-CCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 44454 444554210 0257888888877 5443333334446799999754 7899999999999998
Q ss_pred hhhCC
Q 018665 344 LTLRP 348 (352)
Q Consensus 344 ~~~~~ 348 (352)
+++..
T Consensus 472 ~~~~~ 476 (486)
T 1js3_A 472 AELLA 476 (486)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 77654
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=220.65 Aligned_cols=315 Identities=14% Similarity=0.091 Sum_probs=205.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCC-----C----CEEEecCCCCCCh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSP-----G----DEVIIPAPFWVSY 73 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~-----~----~~vl~~~~~~~~~ 73 (352)
.|++.++..+++ +.++++++ .+++++++|+++|+..++.++.++ | |+|++..+.|..+
T Consensus 69 ~y~~~~~~~~l~------~~la~~~~-------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~ 135 (467)
T 2oqx_A 69 AYSGSRSYYALA------ESVKNIFG-------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT 135 (467)
T ss_dssp CSSSCHHHHHHH------HHHHHHHC-------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHH
T ss_pred eeccCchhHHHH------HHHHHHhC-------cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccc
Confidence 577777888899 99999984 479999999999999999998777 7 8877763333333
Q ss_pred HHHHHhcCCeEEEecc----cCC----CCcccCHHHHHhhcc----CCeeEEEEcCCCCCc-ccCCCHHHHHHHHHHHHh
Q 018665 74 PEMARIADATPVILPT----RIS----ENFLLDPKVLESKLT----EKSRLLILCSPSNPT-GSVYPKNLLDEIARIVAK 140 (352)
Q Consensus 74 ~~~~~~~g~~v~~i~~----~~~----~~~~~d~~~l~~~l~----~~~~~i~i~~p~npt-G~~~~~~~l~~l~~~~~~ 140 (352)
.......|..+..... +.. .++.+|+++|+++++ +++++|++++|+||+ |.+++.+++++|+++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~ 215 (467)
T 2oqx_A 136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred hhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence 4455566666654321 111 234579999999997 378999999999997 899999999999999999
Q ss_pred CCCEEEEecccccc----------cccCCCCccccccC-CCCCCceEEEeccccccccccceeEEEEcChh-HHHHHHhh
Q 018665 141 HPRLLVLSDEIYEH----------IIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKI 208 (352)
Q Consensus 141 ~~~~~livD~~~~~----------~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~~~~~~~ 208 (352)
| |+++|+|+++.. ..+.+.....+... ....+ +++.|+||.+|++ . .|+++++++ +++.+...
T Consensus 216 ~-gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d--~~~~s~sK~~g~~-~-Gg~~~~~~~~~~~~~~~~ 290 (467)
T 2oqx_A 216 Y-DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYAD--MLAMSAKKDAMVP-M-GGLLCMKDDSFFDVYTEC 290 (467)
T ss_dssp T-TCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCS--EEEEESSSTTCCS-S-CEEEEECSGGGHHHHHHH
T ss_pred c-CCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCC--eEEEecccccCCC-C-ceEEEecChhHHHHHHHH
Confidence 9 999999976654 12333211121100 01112 5678999999755 1 277777766 44443332
Q ss_pred hhc---c-----ccCCChHHHHHHHHHhcccCCChHHH-HHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCC
Q 018665 209 QSQ---F-----TSGASSISQKAGVAALGLGYAGGEVV-SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 279 (352)
Q Consensus 209 ~~~---~-----~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~ 279 (352)
... . ....+.....++...++. ++ ++..++..++.+++.+.|+++ ++.+. +.+++++|+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~al~~~l~~------~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~ 362 (467)
T 2oqx_A 291 RTLCVVQEGFPTYGGLEGGAMERLAVGLYD------GMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGK 362 (467)
T ss_dssp HHHHHHTTSSCCCCCCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHH
T ss_pred HHhhhccCCcccccchhhhHHHHHHHhhHh------hhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechh
Confidence 211 1 111222222222222221 11 123344566778888888887 78777 7778888888752
Q ss_pred cc-CCcccCCCCCCChHHHHHHHHHccCEEeccCCCC--C-----------CCCeEEEEee---cCHHHHHHHHHHHHHH
Q 018665 280 YY-GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--G-----------DDTCIRISYA---ASLTTLQAAVERIKKG 342 (352)
Q Consensus 280 ~~-~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~--~-----------~~~~iRi~~~---~~~~~l~~~~~~l~~~ 342 (352)
.. +.....+ +..++.+.|+++.||.+.|++.| + ..+++|++++ .+++++++++++|+++
T Consensus 363 ~~~~~~~~~~----~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~ 438 (467)
T 2oqx_A 363 LLPHIPADQF----PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438 (467)
T ss_dssp HSTTSCGGGC----HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHH
T ss_pred hcccCCcccc----cHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 10 0000000 15567888834459999985532 1 1379999998 6899999999999999
Q ss_pred HhhhC
Q 018665 343 LLTLR 347 (352)
Q Consensus 343 ~~~~~ 347 (352)
+++..
T Consensus 439 l~~~~ 443 (467)
T 2oqx_A 439 KENAA 443 (467)
T ss_dssp HHSGG
T ss_pred Hhhhh
Confidence 98754
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-26 Score=206.60 Aligned_cols=276 Identities=13% Similarity=0.156 Sum_probs=199.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH-----HhcCCeEEEecccCCCCc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-----RIADATPVILPTRISENF 95 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~-----~~~g~~v~~i~~~~~~~~ 95 (352)
+.++++.+ .+..++++|+++|+.. +..++++||+|+++.+.|.+....+ +..|.+++.++.+
T Consensus 74 ~~la~l~g-------~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----- 140 (400)
T 3nmy_A 74 RCVAALEG-------GTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT----- 140 (400)
T ss_dssp HHHHHHHT-------CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT-----
T ss_pred HHHHHHhC-------CCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC-----
Confidence 88888874 3477888888999997 5678899999999999999766554 4459999999863
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
|++++++++++++++|++++|+||+|.+.| +++|+++|+++ |+++|+|++|+...+. .++ ..+.+
T Consensus 141 --d~~~l~~~i~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~-g~~livDe~~~~~~~~----~~~-----~~g~d 205 (400)
T 3nmy_A 141 --DPAAFKAAIRADTKMVWIETPTNPMLKLVD---IAAIAVIARKH-GLLTVVDNTFASPMLQ----RPL-----SLGAD 205 (400)
T ss_dssp --SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHC----CGG-----GGTCS
T ss_pred --CHHHHHHHhccCCCEEEEECCCCCCCeeec---HHHHHHHHHHc-CCEEEEECCCcccccC----Chh-----hcCCc
Confidence 899999999999999999999999999999 99999999999 9999999999753221 111 12455
Q ss_pred EEEeccccccccccceeEE--EE-cChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAMTGWRLGY--IA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~--l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
+++.|++|.++.+|.++|. ++ .++++++.+......++...+++....+...++. +....++..++...+
T Consensus 206 iv~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~-------l~~r~~~~~~~a~~l 278 (400)
T 3nmy_A 206 LVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKT-------LPLRMRAHCENALAL 278 (400)
T ss_dssp EEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHH
T ss_pred EEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH-------HHHHHHHHHHHHHHH
Confidence 9999999999767666654 44 4778888888777666777888777776666653 344556667788888
Q ss_pred HHHhcccCCceec-CC----------------CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 253 VKSFGELEGVKMS-EP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 253 ~~~l~~~~g~~~~-~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
.+.|++.|.+..+ .| ..|.++++++++.. +...++.+.|. -.++.+..|+.+
T Consensus 279 ~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~----------~~~~~~~~~l~-~~~~~~s~G~~~ 347 (400)
T 3nmy_A 279 AQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF----------DAAKRFCEKTE-LFTLAESLGGVE 347 (400)
T ss_dssp HHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH----------HHHHHHHHHCS-SSEECSCCCSSS
T ss_pred HHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH----------HHHHHHHHcCC-cceEecCCCCCc
Confidence 8999887776543 22 23667888886421 02445555443 234444444432
Q ss_pred C-----------------------CCCeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 316 G-----------------------DDTCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 316 ~-----------------------~~~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
. .++.+|+|++. |+.+.+++.|+.+++
T Consensus 348 sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl--e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 348 SLVNHPAVMTHASIPVARREQLGISDALVRLSVGI--EDLGDLRGDLERALV 397 (400)
T ss_dssp CEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHC
T ss_pred ceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHHh
Confidence 1 14689999998 233444555666654
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=211.18 Aligned_cols=324 Identities=13% Similarity=0.106 Sum_probs=223.5
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcC--------------CCCEEEecC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCS--------------PGDEVIIPA 67 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------------~~~~vl~~~ 67 (352)
.|...++..+++ +.+++++. ..|++...+.+++++|+|+++..++.++.. +++.|+++.
T Consensus 126 ~~~~~p~~~~le------~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~ 199 (511)
T 3vp6_A 126 TYEIAPVFVLME------QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSE 199 (511)
T ss_dssp CTTTCHHHHHHH------HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEET
T ss_pred CcccCchHHHHH------HHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECC
Confidence 456667777888 99999988 778776678999999999999988887643 456899999
Q ss_pred CCCCChHHHHHhcCC---eEEEecccCCCCcccCHHHHHhhccCC------eeEEEEcCCCCCcccCCCHHHHHHHHHHH
Q 018665 68 PFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVYPKNLLDEIARIV 138 (352)
Q Consensus 68 ~~~~~~~~~~~~~g~---~v~~i~~~~~~~~~~d~~~l~~~l~~~------~~~i~i~~p~nptG~~~~~~~l~~l~~~~ 138 (352)
+.|.++...++..|. +++.++.+ .++.+|+++|+++++++ +++|++++++|++|.+.| +++|+++|
T Consensus 200 ~~H~s~~~~~~~~g~g~~~~~~v~~d--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~---l~~I~~ia 274 (511)
T 3vp6_A 200 QSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADIC 274 (511)
T ss_dssp TSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC---HHHHHHHH
T ss_pred CchHHHHHHHHHcCCCCCcEEEeecC--CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc---HHHHHHHH
Confidence 999999999999998 89999986 45679999999999754 889999999999999988 99999999
Q ss_pred HhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcCh-hHHHHHHhhhhccc----
Q 018665 139 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFT---- 213 (352)
Q Consensus 139 ~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~~~~~~~~~~~~---- 213 (352)
+++ |+++++|++|++........... +.....-++++.+.+|+++.+ ..+|+++.++ .+++........+.
T Consensus 275 ~~~-~~~lhvD~a~~~~~~~~~~~~~~--~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~ 350 (511)
T 3vp6_A 275 EKY-NLWLHVDAAWGGGLLMSRKHRHK--LNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQD 350 (511)
T ss_dssp HHH-TCEEEEEETTGGGGGGCTTTGGG--GTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSS
T ss_pred HHc-CCEEEEEccchhhHhhChhhhhh--ccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcc
Confidence 999 99999999998754422111111 111112347888999999734 6788887654 45555432111000
Q ss_pred -------------c----CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC---CCCceEE
Q 018665 214 -------------S----GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE---PQGAFYL 273 (352)
Q Consensus 214 -------------~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~---~~~g~~~ 273 (352)
. ....+...++...+ ..++++++.++..++.+++.+.|++.||++++. +..+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~-----g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~ 425 (511)
T 3vp6_A 351 KHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK-----GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVC 425 (511)
T ss_dssp CSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEE
T ss_pred cccccccCccCCCCCCCCchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEE
Confidence 0 01233333333433 267889999999999999999999989999876 4455544
Q ss_pred EeecCCccCCcccCC----CCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEee-c--CHHHHHHHHHHHHHHHhhh
Q 018665 274 FIDFSTYYGSEAEGF----GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-A--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 274 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~-~--~~~~l~~~~~~l~~~~~~~ 346 (352)
|.-.|.......... .-.....++.+.|.+++.+.+......+..+++|+++. . +++|++++++.|++..+++
T Consensus 426 f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 426 FWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp EEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred EEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 433333211000000 00001346888888874334331111112347999984 3 8899999999999887654
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=215.46 Aligned_cols=290 Identities=13% Similarity=0.115 Sum_probs=201.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChH-HHHHHHHHHhcC--CCCEEEecCCCCCChHHHHHhcCCeEEEecccC-CCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAK-QSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~-~a~~~~~~~l~~--~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~-~~~~~ 96 (352)
+.+++++ | .+++ +++++|+| .++..++.++.. +++.|+++.+.|.++...++..|.+++.++..+ +.++.
T Consensus 140 ~~la~~~---g--~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~ 213 (456)
T 2z67_A 140 ESFFKQL---G--LNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVY 213 (456)
T ss_dssp HHHHHHT---T--CCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEE
T ss_pred HHHHHHc---C--CCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCCCC
Confidence 4555554 4 3334 99999999 455545555433 567899999999999999999999999998742 35677
Q ss_pred cCHHHHHhhc-c----CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 97 LDPKVLESKL-T----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 97 ~d~~~l~~~l-~----~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
+|+++|++++ + .++.+|++++|+||+|.+.| +++|.++|+++ |+++++|++|+.+... ..+........
T Consensus 214 ~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~-g~~v~vD~A~~~~~~g-~~~~~~~~~~~- 287 (456)
T 2z67_A 214 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENY-DIPHIINGAYAIQNNY-YLEKLKKAFKY- 287 (456)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHH-HHHHHHHHHTS-
T ss_pred cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHc-CCcEEEECcchHHHHH-hhHHHHHhhCC-
Confidence 9999999999 4 36777888999999999999 99999999999 9999999998764321 10011111111
Q ss_pred CCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHH
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 250 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
+.++++.|++|.++ ++.++|++++ ++++++.+......+....+...+.++...+. .++++++.++..++++
T Consensus 288 -~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~-----~~~~~~~~~~~~~~~~ 360 (456)
T 2z67_A 288 -RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SKNYLELVKNQKNSKK 360 (456)
T ss_dssp -CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 23378899999875 6688999999 57787777432211111111223333333332 4677888999999999
Q ss_pred HHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE---Eec------cCCCC--C
Q 018665 251 FLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV---ALV------PGDAF--G 316 (352)
Q Consensus 251 ~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi---~i~------~g~~~--~ 316 (352)
++.+.|++++ |+.+..++ ++ +++.+... + ...++.+.|.++ |+ -+. .|..| .
T Consensus 361 ~l~~~L~~~~~~~g~~v~~~~-~~-v~~~~~~~-~----------~~~~l~~~L~~~-gi~~~rv~~~~g~f~G~~~~~~ 426 (456)
T 2z67_A 361 LLDELLNDLSKKTGGKFLDVE-SP-IASCISVN-S----------DPVEIAAKLYNL-RVTGPRGIKKTDHFGNCYLGTY 426 (456)
T ss_dssp HHHHHHHHHHHHSSCCBCCCC-CS-SEEEEECS-S----------CHHHHHHHHHHT-TEESCEEECTTCHHHHTCSSCC
T ss_pred HHHHHHHhcccccCCEecCCC-Ce-EEEEEecc-c----------HHHHHHHHHHHc-CCCcceEEeecCcccccccccc
Confidence 9999999886 77777666 43 44555210 0 246888888876 54 332 12222 1
Q ss_pred CCCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 317 DDTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 317 ~~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
..+++|++++. +++|+++++++|++++
T Consensus 427 ~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 427 THDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp SCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 35799999985 8999999999998764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-27 Score=215.46 Aligned_cols=307 Identities=14% Similarity=0.114 Sum_probs=195.0
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHh-cCCeEEEecccCCCCcc
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~-~g~~v~~i~~~~~~~~~ 96 (352)
..+++.+. ..+ ..++|++++|++++++.+++... .++++|++..++|+++...+.. .+..+..+.++...+..
T Consensus 95 ~~la~~l~~~~~---~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (427)
T 3fq8_A 95 NVLAEMVNDAVP---SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVP 171 (427)
T ss_dssp HHHHHHHHHHST---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSC
T ss_pred HHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCC
Confidence 55666665 333 57899999999999999995432 2357899999998875432221 11111111111111100
Q ss_pred ------------cCHHHHHhhccC---CeeEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 97 ------------LDPKVLESKLTE---KSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 97 ------------~d~~~l~~~l~~---~~~~i~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
.|++.|++++++ ++++++++.++|++|...+ .+++++|.++|+++ |+++|+||+|+++ +.+.
T Consensus 172 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~g~-~~g~ 249 (427)
T 3fq8_A 172 KKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH-DALLVFDEVITGF-RIAY 249 (427)
T ss_dssp HHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTBT-TTBT
T ss_pred CcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecccccc-ccCc
Confidence 188999998864 6777777777788887665 66699999999999 9999999999987 5443
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh---hhccccCCChHHHHHHHHHhcccCCChHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
. ........ ...+.|+||.++ +|+|+|++++++++++.+... ....+++.|++.+.++.++++.... ++.
T Consensus 250 ~-~~~~~~~~----~~di~t~sK~~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~ 322 (427)
T 3fq8_A 250 G-GVQEKFGV----TPDLTTLGKIIG-GGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGT 322 (427)
T ss_dssp T-HHHHHTTC----CCSEEEECGGGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTH
T ss_pred c-hhhHhcCC----CCChhhhhhhhh-CCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCH
Confidence 2 11111111 112568899999 899999999999998877642 1334556799999999998875221 233
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccC--CCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 238 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG--FGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
.+++.+..+..++.+.+.+... ++....+..|.++++.+++.....+.. ........++.+.|.++ ||.+.+++.
T Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~~- 399 (427)
T 3fq8_A 323 YEYLDQITKRLSDGLLAIAQET-GHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF- 399 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCCC-
Confidence 3333333333333343333333 332223345677888876421100000 00000145788888876 999988752
Q ss_pred CCCCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 316 GDDTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 316 ~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
..+|++...+++++++++++|++++++
T Consensus 400 ---~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 400 ---EAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp ---SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 355666556999999999999999875
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-26 Score=211.49 Aligned_cols=307 Identities=14% Similarity=0.057 Sum_probs=217.2
Q ss_pred HHHHHHHH-hcCCCCCCCcEE---EeCChHHHHHHHHHHhcCC--------CC-----EEEecCCCCCChHHHHHhcCCe
Q 018665 21 QQFVINLK-ENGLSYTPDQIL---VSNGAKQSILQAVLAVCSP--------GD-----EVIIPAPFWVSYPEMARIADAT 83 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~---~~~g~~~a~~~~~~~l~~~--------~~-----~vl~~~~~~~~~~~~~~~~g~~ 83 (352)
+.+.+++. ..|.+..++++. +++|+++++..++.++..+ |+ +|+++.++|..+...++..|.+
T Consensus 98 ~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~ 177 (502)
T 3hbx_A 98 NRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVE 177 (502)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCce
Confidence 67777777 666654355544 5899999999888877544 55 8999999999999999999999
Q ss_pred EEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-----CEEEEeccccccccc-
Q 018665 84 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-----RLLVLSDEIYEHIIY- 157 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~-----~~~livD~~~~~~~~- 157 (352)
++.+++++ +++.+|+++|++++++++++|++++|+||||.+.| +++|.++|++++ |+++++|++|+++..
T Consensus 178 ~~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p 253 (502)
T 3hbx_A 178 LKEVKLSE-GYYVMDPQQAVDMVDENTICVAAILGSTLNGEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAP 253 (502)
T ss_dssp EEEECCBT-TBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH
T ss_pred eEEEecCC-CcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhh
Confidence 99999874 44779999999999999999999999999999999 888888887652 799999999986531
Q ss_pred --CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhhcc----------ccCCChHHHHHH
Q 018665 158 --APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQF----------TSGASSISQKAG 224 (352)
Q Consensus 158 --~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 224 (352)
.+.....+. ..+-+.+..|.+|.++ ++.++|+++.. ++.+.........+ ..+.+.....+.
T Consensus 254 ~~~~~~~~~~~----~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~ 328 (502)
T 3hbx_A 254 FLYPELEWDFR----LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQ 328 (502)
T ss_dssp HHCTTCCCSTT----STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHH
T ss_pred hhCcccccccC----CCCceEEEECcccccC-CCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHH
Confidence 121111111 1245578889999985 66788987764 44432211111011 012222222223
Q ss_pred HHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 225 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
..++.. ...+.+.+..++..++++++.+.|+++++++++.+ ....++.+.+++... .+..++.+.|.+
T Consensus 329 ~~al~~--lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~---------~~~~~l~~~L~~ 397 (502)
T 3hbx_A 329 YYQLIR--LGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSC---------HTEFEISDMLRR 397 (502)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSS---------CCHHHHHHHHHT
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCc---------CCHHHHHHHHHh
Confidence 333321 01456778888888999999999999977988865 445556677654210 156789999886
Q ss_pred ccCEEeccCCCCC---CCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 304 KAQVALVPGDAFG---DDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 304 ~~gi~i~~g~~~~---~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
+ |+.+....... ...++|+++.. ++++++++++.|+++++.++.
T Consensus 398 ~-Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 398 Y-GWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp T-TCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred C-CcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6 88764432221 23589999987 889999999999999987755
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-26 Score=212.69 Aligned_cols=303 Identities=11% Similarity=0.105 Sum_probs=207.8
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHh----c---------CC------CC-EEEecCCCCCChHHHHHh
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAV----C---------SP------GD-EVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l----~---------~~------~~-~vl~~~~~~~~~~~~~~~ 79 (352)
+.+.+++. ..|.+ ..+++++|+|+|+++..++.++ . .+ ++ .|+++.+.|.++...++.
T Consensus 143 ~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~ 221 (497)
T 2qma_A 143 QKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASW 221 (497)
T ss_dssp HHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHH
Confidence 66566665 44543 2479999999999999888873 2 12 35 799999999999999998
Q ss_pred cCC---eEEEecccCCCCcccCHHHHHhhccCC------eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecc
Q 018665 80 ADA---TPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150 (352)
Q Consensus 80 ~g~---~v~~i~~~~~~~~~~d~~~l~~~l~~~------~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~ 150 (352)
.|. +++.+|++ .++.+|+++|+++++++ +.+|++++++||+|...| +++|+++|+++ |+++++|+
T Consensus 222 ~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~---l~~I~~l~~~~-~~~l~vD~ 295 (497)
T 2qma_A 222 MGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD---LDFIADMAVKH-DMWMHVDG 295 (497)
T ss_dssp TTSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHH-TCEEEEEE
T ss_pred cCCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC---HHHHHHHHHHc-CCEEEEeh
Confidence 877 79999986 45679999999998643 447888899999999999 99999999999 99999999
Q ss_pred cccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChh-HHHHHHhhhhcc-cc---CCC--------
Q 018665 151 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQSQF-TS---GAS-------- 217 (352)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~~~~~~~~~~~-~~---~~~-------- 217 (352)
+|+++.........+..+ ...++++.|+||+++ .+.++|+++++++ .++.+.....+. .. .++
T Consensus 296 a~~~~~~~~~~~~~~~gi---~~~D~i~~s~hK~l~-~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 371 (497)
T 2qma_A 296 AYGGALILSSHKSRLKGV---ERAHSISVDFHKLFY-QTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIAT 371 (497)
T ss_dssp TTGGGGGGSTTGGGGTTG---GGCSEEEEETTTTTC-CCSSCEEEEESCGGGGGGGCC--------------------CC
T ss_pred hhhHHHHhCcchHhhcCc---ccCCEEEEcchhccC-CCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCC
Confidence 999865432210011111 123477889999987 4468999987543 333321110000 00 011
Q ss_pred -----hHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCC
Q 018665 218 -----SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 292 (352)
Q Consensus 218 -----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 292 (352)
.+.+.++...+ ..++++++.++..++++++.+.|+++++++++.+..+.++++++.+... .. ..
T Consensus 372 ~r~~~al~~~~~l~~l-----g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~-~~-----~~ 440 (497)
T 2qma_A 372 TKRFDALKVFMTMQNV-----GPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETA-DL-----DE 440 (497)
T ss_dssp SCCCTHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSS-CH-----HH
T ss_pred CCchhHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCcc-CH-----HH
Confidence 11222222332 2577888889999999999999999889988643333345566543200 00 00
Q ss_pred ChHHHHHHHHHccCEEeccCCCCCCCCeEEEEe-ec--CHHHHHHHHHHHHHHHhhh
Q 018665 293 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 293 ~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~-~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
...++.+.|.++ |+.+.+++.+...+++|+++ +. ++++++++++.|+++++++
T Consensus 441 l~~~l~~~l~~~-G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 441 LNKALRLEALTR-GIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-CCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 124566777766 88776655454457899998 43 8999999999999998764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=212.86 Aligned_cols=293 Identities=15% Similarity=0.132 Sum_probs=195.3
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHH---hcCCCCEEEecCCCCCChHHHHH-h-------------cCC
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLA---VCSPGDEVIIPAPFWVSYPEMAR-I-------------ADA 82 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~---l~~~~~~vl~~~~~~~~~~~~~~-~-------------~g~ 82 (352)
+.+++.+. ..+ ..++|++++|+++++..+++. +.+ ++.|++.+|+|+++...+. . .|+
T Consensus 95 ~~l~~~l~~~~~---~~~~v~~~~~g~ea~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~ 170 (424)
T 2e7u_A 95 VALAKKVKRAYP---FVDLVRFVNSGTEATMSALRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGV 170 (424)
T ss_dssp HHHHHHHHHHCT---TCCEEEEESSHHHHHHHHHHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTC
T ss_pred HHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCC
Confidence 66666666 332 578999999999999999886 444 4789999999988654322 1 122
Q ss_pred ------eEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCC-CCcccCC-CHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 83 ------TPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPS-NPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 83 ------~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~-nptG~~~-~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
++..++. .|++.|++.++ +++++++ ++|+ +++|.+. +.+++++|.++ ++| |+++|+||+
T Consensus 171 ~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l-~~~-g~~lI~DEv 240 (424)
T 2e7u_A 171 PEEYAKLTLVLEY-------NDPEGLREVLKRRGEEIAAII-FEPVVGNAGVLVPTEDFLKALHEA-KAY-GVLLIADEV 240 (424)
T ss_dssp CHHHHTTEEEECT-------TCHHHHHHHHHHHGGGEEEEE-ECSSBCTTSCBCCCHHHHHHHHHG-GGG-TCEEEEECT
T ss_pred CCccCCceEeCCC-------CCHHHHHHHHHhCCCCEEEEE-EeCCCCCCCCcCCCHHHHHHHHHH-HHc-CCEEEEecC
Confidence 2334432 37899998886 3455555 4564 4589765 78899999999 999 999999999
Q ss_pred ccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh---hccccCCChHHHHHHHHHh
Q 018665 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAAL 228 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l 228 (352)
|+++ ..+.. ........ ..+ +.|+||.+| +|+|+|++++++++++.+.... ...+++.|++.+.++.+++
T Consensus 241 ~~g~-~~g~~-~~~~~~~~-~~d---i~s~sK~l~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 313 (424)
T 2e7u_A 241 MTGF-RLAFG-GATELLGL-KPD---LVTLGKILG-GGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATL 313 (424)
T ss_dssp TTTT-TSSTT-HHHHHHTC-CCS---EEEECGGGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHH
T ss_pred cccc-ccchh-HHHHHhCC-Ccc---hhhhhhhhh-CCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHH
Confidence 9987 44421 11111111 112 348999999 6999999999999888775521 2335678899999988888
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccC-CC-CCCChHHHHHHHHH
Q 018665 229 GLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEG-FG-KIENSESLCRYLLD 303 (352)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~ 303 (352)
+. .+..+++.++++++.+++.+.|+++ .++....+..|.++|+++++.....+.. .. ......++.+.|.+
T Consensus 314 ~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 389 (424)
T 2e7u_A 314 EL----LEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD 389 (424)
T ss_dssp HH----HHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT
T ss_pred HH----HHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH
Confidence 74 1112456667777777777777654 1332222334567888886410000000 00 00035578888886
Q ss_pred ccCEEeccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 304 KAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 304 ~~gi~i~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
.||.+.++. ...+|+++..+++++++++++|++++
T Consensus 390 -~Gv~v~~~~----~~~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 390 -RGIYWPPSN----FEAAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp -TTEECCSSS----SSCEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -CCeEEeccC----CCceEeeccCCHHHHHHHHHHHHHhC
Confidence 599999875 23578776669999999999998763
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=207.80 Aligned_cols=280 Identities=14% Similarity=0.092 Sum_probs=198.2
Q ss_pred EEE-eCChHHHHHHHHHHhcCCCCEEEecCCCCCChH-H----HHHhcCCeEEEecccCCCCcccCHHHHHhhcc-CCee
Q 018665 39 ILV-SNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP-E----MARIADATPVILPTRISENFLLDPKVLESKLT-EKSR 111 (352)
Q Consensus 39 i~~-~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~-~----~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~-~~~~ 111 (352)
+.+ ++|+++++..++.+++++||+|+++.|+|.++. . .+...+..++.++++. .++.+|+++++++++ .+++
T Consensus 109 ~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~ 187 (447)
T 3h7f_A 109 ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDP-ATHLIDMDAVRATALEFRPK 187 (447)
T ss_dssp EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCT-TTCSCCHHHHHHHHHHHCCS
T ss_pred eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCc-ccCCcCHHHHHHHHHhcCCe
Confidence 444 788899999999999999999999999987732 1 1222455666777653 345689999999985 4788
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCCCccccccCCCCCCceEEEeccccccccccc
Q 018665 112 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 190 (352)
Q Consensus 112 ~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~ 190 (352)
++++++|+||++. + +++|.++|+++ |+++|+||+|. ++.+.+.....+ . ...+++.|+||++ +|+
T Consensus 188 ~i~~~~~~~~~~~--~---l~~i~~l~~~~-g~lli~Dea~~~g~~~~g~~~~~~---~---~~di~~~s~sK~l--~G~ 253 (447)
T 3h7f_A 188 VIIAGWSAYPRVL--D---FAAFRSIADEV-GAKLLVDMAHFAGLVAAGLHPSPV---P---HADVVSTTVHKTL--GGG 253 (447)
T ss_dssp EEEEECSSCCSCC--C---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCST---T---TCSEEEEESSGGG--CCC
T ss_pred EEEEcCCCCCCcc--C---HHHHHHHHHHc-CCEEEEECCchhhhhcCCCCCCCC---C---CCcEEEecCCcCC--CCC
Confidence 8888899998876 5 99999999999 99999999974 344433322222 1 2238899999988 467
Q ss_pred eeEEEEcChhHHHHHHhhhhcccc-CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc----CCceec
Q 018665 191 RLGYIAGPKHFVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMS 265 (352)
Q Consensus 191 ~~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~g~~~~ 265 (352)
|.|++++++++++.+......+.. +++...+.++..++... ..+++++..+++.++++++.+.|++. +|+.+.
T Consensus 254 ~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~ 331 (447)
T 3h7f_A 254 RSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIA--ATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVV 331 (447)
T ss_dssp SCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEG
T ss_pred CeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEe
Confidence 889999999998888765443333 34444455555555431 13467888889999999999999876 577776
Q ss_pred C-CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec----cC--CCCCCCCeEEEEeec------CHHHH
Q 018665 266 E-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PG--DAFGDDTCIRISYAA------SLTTL 332 (352)
Q Consensus 266 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~----~g--~~~~~~~~iRi~~~~------~~~~l 332 (352)
. +..+++++++++... .+...+.+.|. +.||.+. |+ .....++++|++++. +++++
T Consensus 332 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~-~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei 400 (447)
T 3h7f_A 332 SGGTDVHLVLVDLRDSP----------LDGQAAEDLLH-EVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEF 400 (447)
T ss_dssp GGSCSSSEEEEECTTSS----------CCHHHHHHHHH-HTTEECBC-------------CEEEEECHHHHHHTCCHHHH
T ss_pred cCCCCCCEEEEEcCCCC----------CCHHHHHHHHH-HCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHH
Confidence 4 345666777775421 14555555544 5599998 55 223346789998863 67999
Q ss_pred HHHHHHHHHHHhhh
Q 018665 333 QAAVERIKKGLLTL 346 (352)
Q Consensus 333 ~~~~~~l~~~~~~~ 346 (352)
+++++.|++++.+.
T Consensus 401 ~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 401 TEVADIIATALATG 414 (447)
T ss_dssp HHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998754
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-25 Score=202.92 Aligned_cols=277 Identities=13% Similarity=0.112 Sum_probs=192.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcCCeEEEe-cccCCCCc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVIL-PTRISENF 95 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g~~v~~i-~~~~~~~~ 95 (352)
+.++++++ .. ..++++++++|+..++.+++++||+|+++.+.|.++...+ +..|.+++.+ +.+
T Consensus 65 ~~la~~~g------~~-~~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----- 132 (421)
T 2ctz_A 65 KRLAALEG------GK-AALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE----- 132 (421)
T ss_dssp HHHHHHHT------CS-EEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-----
T ss_pred HHHHHHhC------CC-ceEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC-----
Confidence 99999986 22 3455666799999999999999999999999999887765 7889999998 653
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
|++++++++++++++|++++|+||+|.+.| +++|.++|+++ |+++|+|+++..+.+.+. ++ . .+.+
T Consensus 133 --d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~-g~~livD~~~~~~g~~~~---~~-~----~~~D 198 (421)
T 2ctz_A 133 --RPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREK-GVALIVDNTFGMGGYLLR---PL-A----WGAA 198 (421)
T ss_dssp --CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECGGGGGGTSCC---GG-G----GTCS
T ss_pred --CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCcccccccCC---cc-c----cCCe
Confidence 799999999999999999999999999999 99999999999 999999999932323221 12 1 2345
Q ss_pred EEEeccccccccccceeEEEEcC---hhH----HHHHHhh--------------------------hhccccCCChHHHH
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGP---KHF----VAACNKI--------------------------QSQFTSGASSISQK 222 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~---~~~----~~~~~~~--------------------------~~~~~~~~~~~~~~ 222 (352)
+++.|++|.++.+|.++|++++. +++ ++.+... ....+...+++...
T Consensus 199 i~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~ 278 (421)
T 2ctz_A 199 LVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAW 278 (421)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHH
T ss_pred EEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 99999999998788888888763 122 2222210 01122245555555
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC-C-----------------CCceEEEeecCCccCCc
Q 018665 223 AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-P-----------------QGAFYLFIDFSTYYGSE 284 (352)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~-----------------~~g~~~~~~~~~~~~~~ 284 (352)
++...++. +....++..++.+++.+.|++.|++..+. | ..|.++.+.+.+..
T Consensus 279 ~~~~~l~~-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~--- 348 (421)
T 2ctz_A 279 VVLLGMET-------LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGY--- 348 (421)
T ss_dssp HHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHH---
T ss_pred HHHcCcch-------HHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCH---
Confidence 55454442 34445555678888999999888887652 1 23445666665310
Q ss_pred ccCCCCCCChHHHHHHHHHccCEEeccCCCCC-----------------------CCCeEEEEeecCHHHHHHHHHHHHH
Q 018665 285 AEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----------------------DDTCIRISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-----------------------~~~~iRi~~~~~~~~l~~~~~~l~~ 341 (352)
.....+.+.+. ..++.+..|+.+. .++.+|+|++. ++++++++.|++
T Consensus 349 -------~~~~~~~~~l~-~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~--e~~~~li~~l~~ 418 (421)
T 2ctz_A 349 -------EAAKRFISRLK-LISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL--EHVEDLKAELKE 418 (421)
T ss_dssp -------HHHHHHHHTCS-SSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHH
T ss_pred -------HHHHHHHHhCC-cceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHH
Confidence 02334444432 2344454442211 14789999987 577888888877
Q ss_pred HH
Q 018665 342 GL 343 (352)
Q Consensus 342 ~~ 343 (352)
++
T Consensus 419 al 420 (421)
T 2ctz_A 419 AL 420 (421)
T ss_dssp HT
T ss_pred Hh
Confidence 65
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-24 Score=203.71 Aligned_cols=300 Identities=13% Similarity=0.109 Sum_probs=207.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc-------C-CCC------EEEecCCCCCChHHHHHhcCC---e
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC-------S-PGD------EVIIPAPFWVSYPEMARIADA---T 83 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-------~-~~~------~vl~~~~~~~~~~~~~~~~g~---~ 83 (352)
+.++++++ .+.+++++++|+|+++..++.++. + +|+ .|+++.+.|.++...++..|. +
T Consensus 155 ~~la~l~g-----~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~ 229 (515)
T 2jis_A 155 RKLRALVG-----WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDS 229 (515)
T ss_dssp HHHHHHHT-----CSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGG
T ss_pred HHHHHHhC-----CCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCc
Confidence 44555554 447899999999999988888763 2 454 899999999999999999988 8
Q ss_pred EEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc
Q 018665 84 PVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 157 (352)
Q Consensus 84 v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~ 157 (352)
++.+|++ .++.+|+++|++++++ ++++|++++++|++|.+.| +++|+++|+++ |+++++|++++++..
T Consensus 230 v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~-g~~l~vD~a~~~~~~ 303 (515)
T 2jis_A 230 VRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRH-GLWLHVDAAWGGSVL 303 (515)
T ss_dssp EEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHH-TCEEEEEETTGGGGG
T ss_pred EEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHc-CCeEEEehhhhhHHH
Confidence 9999986 3567999999999975 4889999999999999999 99999999999 999999999998665
Q ss_pred CCCCcc-ccccCCCCCCceEEEeccccccccccceeEEEEcChh--HHHHHHh----hh----h-------cccc-----
Q 018665 158 APATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAACNK----IQ----S-------QFTS----- 214 (352)
Q Consensus 158 ~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~--~~~~~~~----~~----~-------~~~~----- 214 (352)
...... .+..+ .+.++++.|++|+++ .+.++|+++++++ +++.... +. . ..+.
T Consensus 304 ~~~~~~~~~~g~---~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~ 379 (515)
T 2jis_A 304 LSQTHRHLLDGI---QRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCG 379 (515)
T ss_dssp GCTTTGGGGTTG---GGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSS
T ss_pred hChhhHhhcCCC---ccCCEEEECcccccC-CCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCC
Confidence 322111 11111 133488999999987 4467999998766 6664211 10 0 0000
Q ss_pred -CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC-CCceEEEeecCCccCCcccCCCCCC
Q 018665 215 -GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIE 292 (352)
Q Consensus 215 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~ 292 (352)
....+.+.++.+++. .+.++++.++..++++++.+.|+++++++++.+ ..+.+.+...|.... +.....
T Consensus 380 rr~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~----~~~~~~ 450 (515)
T 2jis_A 380 RRVDCLKLWLMWKAQG-----DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLR----GKQESP 450 (515)
T ss_dssp CCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGT----TCTTST
T ss_pred CcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCcccc----ccccch
Confidence 111334444444543 466788889999999999999999889988754 345444433342110 000000
Q ss_pred C--------hHHHHHHHHHccCEEecc-CCCCCCCCeEEEEee-c--CHHHHHHHHHHHHHHHhh
Q 018665 293 N--------SESLCRYLLDKAQVALVP-GDAFGDDTCIRISYA-A--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 293 ~--------~~~~~~~l~~~~gi~i~~-g~~~~~~~~iRi~~~-~--~~~~l~~~~~~l~~~~~~ 345 (352)
+ ...+.+.|.++ |+.... ....+..+++|+++. . +++|++++++.|++++++
T Consensus 451 ~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 451 DYHERLSKVAPVLKERMVKE-GSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp THHHHHHTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhc-CCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1 12356677766 643321 111122468999994 4 889999999999998765
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-24 Score=195.07 Aligned_cols=289 Identities=14% Similarity=0.223 Sum_probs=203.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-------cCCCCEEEecCCCCCChHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-------CSPGDEVIIPAPFWVSYPE 75 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-------~~~~~~vl~~~~~~~~~~~ 75 (352)
+|++.++..+++ +.++++++ .+++++++++++++..++.++ .++||+|+++.++|.++..
T Consensus 29 ~~~~~~~~~~l~------~~la~~~~-------~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~ 95 (390)
T 3b8x_A 29 MFTMGEYVKQYE------TQFAKTFG-------SKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYY 95 (390)
T ss_dssp CCSSCHHHHHHH------HHHHHHHT-------CSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHH
T ss_pred CCCCChHHHHHH------HHHHHHHC-------CCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHH
Confidence 455667778888 99999986 236788888889999999998 7789999999999999999
Q ss_pred HHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 76 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 76 ~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
.++..|.+++.++++++ ++.+|+++|++++++++++|++++ ++|.+.+ +++|.++|+++ |+++|+|++|+..
T Consensus 96 ~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~---~~~i~~l~~~~-~~~li~D~a~~~g 167 (390)
T 3b8x_A 96 PLQQYGLRVKFVDIDIN-TLNIDIESLKEAVTDSTKAILTVN---LLGNPNN---FDEINKIIGGR-DIILLEDNCESMG 167 (390)
T ss_dssp HHHHTTCEEEEECBCTT-TCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCC---HHHHHHHHTTS-CCEEEEECTTCTT
T ss_pred HHHHcCCEEEEEecCcc-ccCcCHHHHHHHhCcCCeEEEEEC---CccChhh---HHHHHHHHHHc-CCEEEEECcCccc
Confidence 99999999999998753 467999999999988899988874 5677777 99999999999 9999999999842
Q ss_pred -ccCCCCccccccCCCCCCceEEEec--cccccccccceeEEEEcCh-hHHHHHHhhhhc--------------------
Q 018665 156 -IYAPATHTSFASLPGMWERTLTVNG--FSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQ-------------------- 211 (352)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~~i~~~s--~sK~~g~~g~~~g~l~~~~-~~~~~~~~~~~~-------------------- 211 (352)
.+.+ ...... .++...| .+|.++ +| +.|++++++ .+.+.++.....
T Consensus 168 ~~~~~------~~~g~~--~~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 237 (390)
T 3b8x_A 168 ATFNN------KCAGTF--GLMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQ 237 (390)
T ss_dssp CEETT------EETTSS--SSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCT
T ss_pred CEECC------cccccc--cceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccc
Confidence 2211 111111 1122222 245553 33 348888876 666655543210
Q ss_pred -----------cccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC--CCce-EEEeec
Q 018665 212 -----------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--QGAF-YLFIDF 277 (352)
Q Consensus 212 -----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~g~-~~~~~~ 277 (352)
++..++.+...++...+ +.+++..++.+++++++.+.|++++++.+..+ ..++ .+++.+
T Consensus 238 ~~~~~~~~~~g~~~~~~~~~aa~~l~~l-------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~ 310 (390)
T 3b8x_A 238 FEESFKFVLPGYNVRPLEMSGAIGIEQL-------KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFII 310 (390)
T ss_dssp TTSSSCBCSCCCBCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEE
T ss_pred cccccceeccccccCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEe
Confidence 01114444444433333 45667788888899999999998888877643 2333 245555
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHccCEEecc---CCCCCC-C---------------------CeEEEEeec--CHH
Q 018665 278 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVP---GDAFGD-D---------------------TCIRISYAA--SLT 330 (352)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~---g~~~~~-~---------------------~~iRi~~~~--~~~ 330 (352)
+... + .+.+++.+.|.++ ||.+.+ ++.+.. + +.+||++.. +++
T Consensus 311 ~~~~-----~----~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~ 380 (390)
T 3b8x_A 311 KKDS-----G----VIRKQLVENLNSA-GIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFD 380 (390)
T ss_dssp CTTS-----C----CCHHHHHHHHHHT-TBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHH
T ss_pred cCcC-----c----ccHHHHHHHHHHC-CCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHH
Confidence 5210 0 1678899998865 998886 332211 0 259999987 999
Q ss_pred HHHHHHHHH
Q 018665 331 TLQAAVERI 339 (352)
Q Consensus 331 ~l~~~~~~l 339 (352)
|++++++.|
T Consensus 381 di~~i~~~l 389 (390)
T 3b8x_A 381 EIDYLREVL 389 (390)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999999876
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=205.72 Aligned_cols=314 Identities=13% Similarity=0.080 Sum_probs=225.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC--------CcEEEeCChHHHHHHHHHHhcC--------------
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP--------DQILVSNGAKQSILQAVLAVCS-------------- 58 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~--------~~i~~~~g~~~a~~~~~~~l~~-------------- 58 (352)
..|...++..+++ +.+++++. ..|.+... ...++++|+|+++..++.+...
T Consensus 108 ~~~~~~p~~~~lE------~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~ 181 (481)
T 4e1o_A 108 FTWASSPACTELE------MNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDAD 181 (481)
T ss_dssp SSTTTCHHHHHHH------HHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred CCcCCCcHHHHHH------HHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccc
Confidence 3466677778888 99999988 66765322 3678999999999988877532
Q ss_pred -----CCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCC------eeEEEEcCCCCCcccCCC
Q 018665 59 -----PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVYP 127 (352)
Q Consensus 59 -----~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~------~~~i~i~~p~nptG~~~~ 127 (352)
+++.|+++.+.|.++...++..|.+++.+|++ .++.+|+++|+++++++ +.+|+++.++|++|.+.|
T Consensus 182 ~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~ 259 (481)
T 4e1o_A 182 ESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC 259 (481)
T ss_dssp HHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred cccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC
Confidence 45689999999999999999999999999986 55679999999999653 677888899999999988
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcCh-hHHHHHH
Q 018665 128 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACN 206 (352)
Q Consensus 128 ~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~~~~~ 206 (352)
+++|+++|+++ |+++++|++|+............. ......+.++.+.+|+++.+ ..+|+++..+ ..+....
T Consensus 260 ---l~~I~~la~~~-~~~lhvDaA~g~~~~~~~~~~~~~--~gi~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~ 332 (481)
T 4e1o_A 260 ---LSELGPICARE-GLWLHIDAAYAGTAFLCPEFRGFL--KGIEYADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTF 332 (481)
T ss_dssp ---HHHHHHHHHHH-TCEEEEECTTGGGGGGSGGGGGGG--TTGGGCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTT
T ss_pred ---HHHHHHHHHHc-CCeEEeehhhHHHHHhChhhHHHh--cCcccCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHh
Confidence 99999999999 999999999987543221111111 01011247788999999744 5677776654 4433211
Q ss_pred hhhhcc---------------c--c--CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC
Q 018665 207 KIQSQF---------------T--S--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 267 (352)
Q Consensus 207 ~~~~~~---------------~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~ 267 (352)
.....+ + . ....+.+.++...+. .+.++++.++..++++++.+.|+++|++++..+
T Consensus 333 ~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~ 407 (481)
T 4e1o_A 333 SVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG-----VKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAK 407 (481)
T ss_dssp CCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSC
T ss_pred cCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 100000 0 0 112333444444442 577888899999999999999999999999866
Q ss_pred CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec---CHHHHHHHHHHHHHHHh
Q 018665 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 268 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~---~~~~l~~~~~~l~~~~~ 344 (352)
....++++++++.. ....++.++|.+++.+.+.++. .....++|+++.. ++++++++++.|+++.+
T Consensus 408 ~~~~~v~f~~~~~~----------~~~~~l~~~L~~~g~~~~~~~~-~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 476 (481)
T 4e1o_A 408 RHLGLVVFRLKGPN----------SLTENVLKEIAKAGRLFLIPAT-IQDKLIIRFTVTSQFTTRDDILRDWNLIRDAAT 476 (481)
T ss_dssp CCSSEEEEEESSCH----------HHHHHHHHHHHHHCSSBCEEEE-ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEeCCch----------HHHHHHHHHHHhCCeEEEEeeE-ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 66666777765321 1467889999887445554432 3335689999764 78999999999999987
Q ss_pred hh
Q 018665 345 TL 346 (352)
Q Consensus 345 ~~ 346 (352)
++
T Consensus 477 ~l 478 (481)
T 4e1o_A 477 LI 478 (481)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-25 Score=212.05 Aligned_cols=314 Identities=13% Similarity=0.065 Sum_probs=213.7
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH-HHhcCCeE
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIADATP 84 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~-~~~~g~~v 84 (352)
++.-..+++ +.+|++++ ....+++++|+++++..++.+++++||+|+++.++|.++... ++..|.++
T Consensus 171 ~~~~i~e~e------~~lA~~~g------ae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~ 238 (730)
T 1c4k_A 171 HEGPAVAAE------KHAARVYN------ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRP 238 (730)
T ss_dssp TBTHHHHHH------HHHHHHTT------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEE
T ss_pred ChHHHHHHH------HHHHHHHC------CCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEE
Confidence 334446677 99999986 345688888889999999999999999999999999999888 88899999
Q ss_pred EEecccCCC---CcccCHHHH-----HhhccCC------e----eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEE
Q 018665 85 VILPTRISE---NFLLDPKVL-----ESKLTEK------S----RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146 (352)
Q Consensus 85 ~~i~~~~~~---~~~~d~~~l-----~~~l~~~------~----~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~l 146 (352)
++++...+. .+.+|+++| +++++++ + +++++++| |++|.+.+ +++|+++|+++ |+++
T Consensus 239 v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~-g~~l 313 (730)
T 1c4k_A 239 VYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHL-CDYI 313 (730)
T ss_dssp EEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGG-BSEE
T ss_pred EEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHc-CCeE
Confidence 998875321 123688888 8888765 4 88899998 58999999 99999999999 9999
Q ss_pred Eeccccccc-ccCCCCc-cccccC---CCCCCceEEEeccccccccccce-eEEEEcChhHH---------HHHHhh-hh
Q 018665 147 LSDEIYEHI-IYAPATH-TSFASL---PGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFV---------AACNKI-QS 210 (352)
Q Consensus 147 ivD~~~~~~-~~~~~~~-~~~~~~---~~~~~~~i~~~s~sK~~g~~g~~-~g~l~~~~~~~---------~~~~~~-~~ 210 (352)
++|++|+.. .+.+... .+.... ..+.++++++.|+||.++ |++ .|+++.+++.+ ..+... ..
T Consensus 314 ivDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~--g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~ 391 (730)
T 1c4k_A 314 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA--GFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNL 391 (730)
T ss_dssp EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS--CCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHH
T ss_pred EEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC--CCCCEEEEEecchhhcCcccccCHHHHHHHHHH
Confidence 999999742 2322111 111111 222346799999999874 444 35554333221 222222 22
Q ss_pred ccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcc-cCCceecCCC---------------------
Q 018665 211 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQ--------------------- 268 (352)
Q Consensus 211 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~--------------------- 268 (352)
..+.+++....+++.+++... ..+...+..+++.++.+.+++.|++ ++|+.+..+.
T Consensus 392 ~~stsp~~~~iaal~aA~~~l--~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 469 (730)
T 1c4k_A 392 FMSTSPFYPMYAALDVNAAMQ--EGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDY 469 (730)
T ss_dssp HSCSSCCHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchh
Confidence 334567776666666555431 1223455667777788888888887 6787775432
Q ss_pred ----------------Cc-eE-----EEeecCCc--cCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEE
Q 018665 269 ----------------GA-FY-----LFIDFSTY--YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 324 (352)
Q Consensus 269 ----------------~g-~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~ 324 (352)
.+ ++ +.+..|+. ..-..+. ...++..+.+.|.++ ||.+... ....+|++
T Consensus 470 ~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~--~g~~~~~l~~~L~e~-GI~v~~~----~~~~ir~~ 542 (730)
T 1c4k_A 470 WRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYED--FGVPATIVANYLRDH-GIIPEKS----DLNSILFL 542 (730)
T ss_dssp GBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECS--SCCCHHHHHHHHHHT-TCCCSEE----CSSEEEEE
T ss_pred hccCccchhccccccCCcccccCCeEEEEEeCCcccccccccc--cCCCHHHHHHHHHHC-CcEEEEC----CCCeEEEE
Confidence 11 11 34454421 0000000 012688999999876 8887553 35788998
Q ss_pred eec--CHHHHHHHHHHHHHHHhhhC
Q 018665 325 YAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 325 ~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
++. ++++++++++.|+++.+.+.
T Consensus 543 ~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 543 MTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 887 88999999999999987663
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-25 Score=204.18 Aligned_cols=313 Identities=11% Similarity=0.038 Sum_probs=222.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-------CcEEEeCChHHHHHHHHHHhcC----------------
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-------DQILVSNGAKQSILQAVLAVCS---------------- 58 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-------~~i~~~~g~~~a~~~~~~~l~~---------------- 58 (352)
.|...++..+++ +.+++++. ..|.+... ...++|+|+|+++..++.+...
T Consensus 104 ~~~~~p~~~~lE------~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~ 177 (475)
T 3k40_A 104 TWIASPACTELE------VVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEH 177 (475)
T ss_dssp SCCCCHHHHHHH------HHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHH
T ss_pred CccCCcHHHHHH------HHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 466677777888 99988888 66765321 3689999999999888877521
Q ss_pred ---CCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCC------eeEEEEcCCCCCcccCCCHH
Q 018665 59 ---PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVYPKN 129 (352)
Q Consensus 59 ---~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~------~~~i~i~~p~nptG~~~~~~ 129 (352)
+++.|+++...|.++...++..|.+++.+|++ .++ +|+++|+++++++ +.+|+++.++|++|.+.|
T Consensus 178 ~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~-- 252 (475)
T 3k40_A 178 TILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY-- 252 (475)
T ss_dssp HHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC--
T ss_pred cccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC--
Confidence 23579999999999999999999999999986 456 9999999999653 677888999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEecccccccccCCCCccc-cccCCCCCCceEEEeccccccccccceeEEEEcCh-hHH-HHHH
Q 018665 130 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFV-AACN 206 (352)
Q Consensus 130 ~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~-~~~~ 206 (352)
+++|+++|+++ |+++++|++|+........... +..+ ...+.+..+.+|+++ ...++|+++.++ ..+ +.+.
T Consensus 253 -l~~I~~la~~~-~~~lhvD~A~~~~~~~~~~~~~~~~gi---~~~Ds~~~~~hK~l~-~p~g~g~l~~~~~~~l~~~~~ 326 (475)
T 3k40_A 253 -LDECGPVGNKH-NLWIHVDAAYAGSAFICPEYRHLMKGI---ESADSFNFNPHKWML-VNFDCSAMWLKDPSWVVNAFN 326 (475)
T ss_dssp -HHHHHHHHHHT-TCEEEEECTTGGGGGGSGGGGGGGTTG---GGCSEEEECHHHHSS-CCSSCEEEEESSGGGC-----
T ss_pred -HHHHHHHHHHh-CCeEEEeHHhHHHHHhCHhhHHHhcCc---ccCCEEEECchhccC-CCCceEEEEEeCHHHHHHHhc
Confidence 99999999999 9999999999875332211111 1111 123478899999987 445678777654 332 2221
Q ss_pred hhhhc--------------ccc--C--CChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC
Q 018665 207 KIQSQ--------------FTS--G--ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 268 (352)
Q Consensus 207 ~~~~~--------------~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~ 268 (352)
....+ ++. + ...+.+.++...+. .+.++++.++..++++++.+.|+++|++++..+.
T Consensus 327 ~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~ 401 (475)
T 3k40_A 327 VDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG-----VENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI 401 (475)
T ss_dssp ----------------------CCCGGGTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC
T ss_pred CCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 10000 000 0 11223333333332 5678888999999999999999999999998665
Q ss_pred CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec---CHHHHHHHHHHHHHHHhh
Q 018665 269 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 269 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~---~~~~l~~~~~~l~~~~~~ 345 (352)
...++++.+++.. ....++.++|.+++++.+.++.. ....++|+++.. ++++++++++.|+++.++
T Consensus 402 ~~~iv~f~~~~~~----------~~~~~l~~~L~~~g~~~~~~~~~-~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 402 NMGLVCFRLKGSN----------ERNEALLKRINGRGHIHLVPAKI-KDVYFLRMAICSRFTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp BTTEEEEEESSCH----------HHHHHHHHHHHHHTSCBCEEEEE-TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCch----------HHHHHHHHHHHhCCcEEEEeeEE-CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5556667765320 14678999999885555555432 235789999864 789999999999999887
Q ss_pred hCC
Q 018665 346 LRP 348 (352)
Q Consensus 346 ~~~ 348 (352)
+..
T Consensus 471 ~~~ 473 (475)
T 3k40_A 471 MEQ 473 (475)
T ss_dssp HHT
T ss_pred Hhc
Confidence 643
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=194.92 Aligned_cols=292 Identities=13% Similarity=0.142 Sum_probs=202.6
Q ss_pred CCCChhhhccchhhHHH-HHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCCeE
Q 018665 7 SQGTLQMRVLWSFVQQF-VINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATP 84 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~i-a~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~~v 84 (352)
.+...+++ +++ |++++ ..+++++++|+++++..++.++ +++||+|+++.++|.++...++..|.++
T Consensus 35 ~~~~~~l~------~~~~a~~~g------~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~ 102 (377)
T 3ju7_A 35 GPINQRFE------QTIMSGFFQ------NRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIWCGLEP 102 (377)
T ss_dssp CHHHHHHH------HHHHHHTST------TCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHHHTTCEE
T ss_pred CHHHHHHH------HHHHHHHhC------CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEE
Confidence 34456777 999 98874 2678999999999999999998 8999999999999999999999999999
Q ss_pred EEecccCCCCcccCHHHHHhhc-cCC--eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 85 VILPTRISENFLLDPKVLESKL-TEK--SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 85 ~~i~~~~~~~~~~d~~~l~~~l-~~~--~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
+.++++. +++.+|++++++++ +++ +++|+ |+||+|.+.+ +++|.++|+ + |+++|+|++|+......
T Consensus 103 ~~v~~~~-~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~---~~~i~~la~-~-~~~vi~D~a~a~g~~~~-- 171 (377)
T 3ju7_A 103 YFIDISI-DDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMN---LEEYEELEK-K-GVPVVVDAAPGFGLMNG-- 171 (377)
T ss_dssp EEECBCT-TTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCC---CHHHHHHHH-T-TCCBEEECTTCTTCEET--
T ss_pred EEEecCC-ccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccC---HHHHHHHHh-c-CCEEEEECCCccCCeEC--
Confidence 9999874 46779999999988 556 88777 6788999999 889999999 9 99999999997532111
Q ss_pred ccccccCCCCCCceEEEecc--ccccccccceeEEEEc-ChhHHHHHHhhhhc------------cccCCChHHHHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ------------FTSGASSISQKAGVA 226 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~--sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 226 (352)
...+ .. ....+.+.|+ +|.++ +| ..|+++. ++++.++++..... ++..++.+..+.+..
T Consensus 172 ~~~~---g~-~~~d~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~ 245 (377)
T 3ju7_A 172 GMHY---GQ-DFSGMIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIA 245 (377)
T ss_dssp TEET---TT-TCSSEEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHH
T ss_pred CEec---cC-CCCcEEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHH
Confidence 0111 00 0112555554 69997 45 5677665 56777777655431 133455555444444
Q ss_pred HhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCcee-cCCCC---ce--EEEeecCCccCCcccCCCCCCChHHHHHH
Q 018665 227 ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQG---AF--YLFIDFSTYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~~~---g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
.++ .++...++.+++++.+.+.|++++++.. ..+.. .+ ++.+.+++.. +.+++.+.
T Consensus 246 ~l~-------~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~ 307 (377)
T 3ju7_A 246 TMK-------KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV-----------RNKQVIED 307 (377)
T ss_dssp HHH-------THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS-----------CHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh-----------hHHHHHHH
Confidence 443 3455566667777777788877654422 11111 11 2334444321 47889999
Q ss_pred HHHccCEEeccCCC--CCC-------------------CCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 301 LLDKAQVALVPGDA--FGD-------------------DTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 301 l~~~~gi~i~~g~~--~~~-------------------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
|.++ ||.+..+.. +.. ...+|+++.. +++|+++.++.|++++.+.
T Consensus 308 L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~~ 375 (377)
T 3ju7_A 308 LKKQ-KIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVSA 375 (377)
T ss_dssp HHTT-TBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred HHHC-CCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 8866 898876541 100 1369999987 9999999999999888653
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=200.03 Aligned_cols=282 Identities=15% Similarity=0.132 Sum_probs=193.7
Q ss_pred hhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHH-hcCCCCEEEecCCCCCChHHHH----HhcCCeEEEecccCC
Q 018665 18 SFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLA-VCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRIS 92 (352)
Q Consensus 18 ~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~-l~~~~~~vl~~~~~~~~~~~~~----~~~g~~v~~i~~~~~ 92 (352)
++++.++++++ .+++++.+++|++.+.+.+..+ ..+++|+|+++.++|.++...+ +..|.+++.++.+
T Consensus 112 ~~~~~la~~~g-----~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~-- 184 (438)
T 1wyu_A 112 EYQTMIAELAG-----LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE-- 184 (438)
T ss_dssp HHHHHHHHHHT-----SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB--
T ss_pred HHHHHHHHHhC-----CCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc--
Confidence 34488888876 5667889999999554444433 2468899999999999988665 4489999999872
Q ss_pred CCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc-ccccccCCCCccccccCCCC
Q 018665 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI-YEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 93 ~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~-~~~~~~~~~~~~~~~~~~~~ 171 (352)
++.+|+++ +++++++|++++| ||+|.+.| +++|+++|+++ |+++++|.. ++ +. .. ..+ ..
T Consensus 185 -~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~-g~~vivd~d~~a-~g--~~-~~~-~~---- 245 (438)
T 1wyu_A 185 -GGRTPLPE----VGEEVGAVVVQNP-NFLGALED---LGPFAEAAHGA-GALFVAVADPLS-LG--VL-KPP-GA---- 245 (438)
T ss_dssp -TTBCCCCC----CCTTEEEEEEESS-CTTSBCCC---HHHHHHHHHHT-TCEEEEECCTTG-GG--TB-CCH-HH----
T ss_pred -CCccCHHH----hCCCeEEEEEECC-CCCeEEec---HHHHHHHHHHc-CCEEEEEechhh-cc--Cc-CCC-cc----
Confidence 23577665 6678999999999 99999998 99999999999 999996632 21 11 10 011 11
Q ss_pred CCceEEEecccccc----ccccceeEEEEcChhHHHHHHhhh------------------------hccccCCCh---HH
Q 018665 172 WERTLTVNGFSKAF----AMTGWRLGYIAGPKHFVAACNKIQ------------------------SQFTSGASS---IS 220 (352)
Q Consensus 172 ~~~~i~~~s~sK~~----g~~g~~~g~l~~~~~~~~~~~~~~------------------------~~~~~~~~~---~~ 220 (352)
.+.++++.| +|.+ ++.|.++|++++++++++.+.... +....+.+. ..
T Consensus 246 ~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~ 324 (438)
T 1wyu_A 246 YGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQ 324 (438)
T ss_dssp HTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCH
T ss_pred CCCCEEEEC-CcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHH
Confidence 233477777 5543 345668999999988776542110 000111211 12
Q ss_pred HHHHHHH--hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE-EEeecCCccCCcccCCCCCCChHHH
Q 018665 221 QKAGVAA--LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY-LFIDFSTYYGSEAEGFGKIENSESL 297 (352)
Q Consensus 221 ~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (352)
..++.++ +.. ...+.++++.++++++++++.+.|++++|+++..+...+. +.+.++ . +..++
T Consensus 325 ~~a~~aa~~l~~--~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~-~------------~~~~~ 389 (438)
T 1wyu_A 325 LTALMGAMYLAA--LGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP-K------------DPEAV 389 (438)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS-S------------CHHHH
T ss_pred HHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC-C------------CHHHH
Confidence 2222222 321 0145678888999999999999999988998876532221 223332 1 67899
Q ss_pred HHHHHHccCEEe--ccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 298 CRYLLDKAQVAL--VPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 298 ~~~l~~~~gi~i--~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
.++|.++ ||.+ .++..+ .++++|++++. +++|++++++.|++++
T Consensus 390 ~~~L~~~-gi~v~~~~~~~~-~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 390 RRALAER-GFHGATPVPREY-GENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp HHHHHHT-TCCCCEECCTTS-CSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHC-Cceecccccccc-CCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 9999976 9988 566544 37899999995 8899999999998764
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=194.97 Aligned_cols=291 Identities=13% Similarity=0.093 Sum_probs=190.0
Q ss_pred HHHHHHHHhcCCCCCCCc---EEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH--------HHHhcCCe--EEEe
Q 018665 21 QQFVINLKENGLSYTPDQ---ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE--------MARIADAT--PVIL 87 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~---i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~--------~~~~~g~~--v~~i 87 (352)
+.++++++ .+.+. .++++||++|+..++.+++++||+|+++++.|.++.. .+...|.. ++.+
T Consensus 107 ~~~a~l~g-----~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~ 181 (490)
T 2a7v_A 107 RRALEAFD-----LDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPY 181 (490)
T ss_dssp HHHHHHTT-----CCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------C
T ss_pred HHHHHHcC-----CCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEec
Confidence 45555554 33432 3455688999999999999999999999998865431 22344543 3444
Q ss_pred cccCCCCcccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCCCcccc
Q 018665 88 PTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSF 165 (352)
Q Consensus 88 ~~~~~~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~~~~~~ 165 (352)
+++. .++.+|+++|+++++ .++++|+++.++||+ ..+ +++|.++|+++ |+++++|++|. ++...+..+.++
T Consensus 182 ~vd~-~~~~iD~d~le~~l~~~~~klIi~~~s~~~~--~~d---l~~i~~ia~~~-g~~livD~Ah~~glv~~g~~~~~~ 254 (490)
T 2a7v_A 182 KLNP-KTGLIDYNQLALTARLFRPRLIIAGTSAYAR--LID---YARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPF 254 (490)
T ss_dssp CBCT-TTCSBCHHHHHHHHHHHCCSEEEECCSSCCS--CCC---HHHHHHHHHHT-TCEEEEECGGGHHHHHTTSSCCGG
T ss_pred cccc-ccCCcCHHHHHHHHhhcCCcEEEEcCCCCCC--ccc---HHHHHHHHHHc-CCEEEEccccccccccCCcCCCCC
Confidence 4442 346799999999986 478888888888874 556 99999999999 99999999976 333334322233
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEEcChh---------------HHHHHHhhhhccc-cCCChHHHHHHHHHhc
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH---------------FVAACNKIQSQFT-SGASSISQKAGVAALG 229 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 229 (352)
. ..++++.|+||.+ +|.+.|+++++++ +.+.+++...... .+++.....++..++.
T Consensus 255 ~------~aDiv~~S~hK~l--~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~ 326 (490)
T 2a7v_A 255 K------HADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALK 326 (490)
T ss_dssp G------TCSEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHH
T ss_pred C------CCCEEEECCcccC--ccccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH
Confidence 1 2338999999998 4557799998764 4555554432222 3455555555555555
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE
Q 018665 230 LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308 (352)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 308 (352)
... .+.+++..+++.++++++.+.|++. |+.+..+ ...+++|++++... .+..++.+.|.+ .||.
T Consensus 327 ~~~--~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~g----------~~~~~~~~~L~~-~GI~ 392 (490)
T 2a7v_A 327 QAC--TPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKG----------LDGARAERVLEL-VSIT 392 (490)
T ss_dssp HHH--SHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTT----------CCHHHHHHHHHH-TTEE
T ss_pred HHh--hhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCCC----------CCHHHHHHHHHh-CCeE
Confidence 311 2344777888899999999999987 8888753 44567888876421 167777777765 5999
Q ss_pred eccCCCCC-----CCCeEEEEeec------CHHHHHHHHHHHHHHHhh
Q 018665 309 LVPGDAFG-----DDTCIRISYAA------SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 309 i~~g~~~~-----~~~~iRi~~~~------~~~~l~~~~~~l~~~~~~ 345 (352)
+..+..++ .+..+|++... +++|++++++.|.+++..
T Consensus 393 v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 393 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp CEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 98654333 24689997743 789999999999888863
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=198.45 Aligned_cols=297 Identities=13% Similarity=0.044 Sum_probs=200.6
Q ss_pred ChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhc-------C------------------CC---
Q 018665 10 TLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVC-------S------------------PG--- 60 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-------~------------------~~--- 60 (352)
..+++ +.+++.+. ..+ ...+.+++++|+++|++.+++.+. + +|
T Consensus 108 ~~~l~------~~la~~l~~~~~--~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r 179 (472)
T 1ohv_A 108 PENFV------EKLRESLLSVAP--KGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPD 179 (472)
T ss_dssp BTTHH------HHHHHTGGGGCC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCC
T ss_pred HHHHH------HHHHHHHHHhCC--CCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCC
Confidence 45677 88888665 232 256799999999999999998763 1 24
Q ss_pred CEEEecCCCCCChHHHH-HhcCCe--------E---EEecccCCC-C------c-----ccCHHHHHhhccC------Ce
Q 018665 61 DEVIIPAPFWVSYPEMA-RIADAT--------P---VILPTRISE-N------F-----LLDPKVLESKLTE------KS 110 (352)
Q Consensus 61 ~~vl~~~~~~~~~~~~~-~~~g~~--------v---~~i~~~~~~-~------~-----~~d~~~l~~~l~~------~~ 110 (352)
++|++.++.|+++...+ ...|.. + ..++++... . + ..|++.|++++++ ++
T Consensus 180 ~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 259 (472)
T 1ohv_A 180 YSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTV 259 (472)
T ss_dssp CEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCE
Confidence 79999999998876544 333321 1 112222100 0 0 1268899998875 78
Q ss_pred eEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEecccccccccc
Q 018665 111 RLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 189 (352)
Q Consensus 111 ~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g 189 (352)
++|+++..+|++|. .++.+++++|.++|+++ |+++|+||+|.++.+.|. ...+...... ..+.+.|+||.+ ++|
T Consensus 260 ~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g~-~~~~~~~gv~--~~~Di~t~sK~~-l~G 334 (472)
T 1ohv_A 260 AGIIVEPIQSEGGDNHASDDFFRKLRDISRKH-GCAFLVDEVQTGGGSTGK-FWAHEHWGLD--DPADVMTFSKKM-MTG 334 (472)
T ss_dssp EEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSS-SSGGGGGCCS--SCCSEEEECGGG-SSE
T ss_pred EEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHh-CCEEEEeCcccCCCCCCC-chhccccCCC--CCCCEEEEcccc-ccC
Confidence 88888777888996 56789999999999999 999999999998766553 1222222110 002245899994 233
Q ss_pred ceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc----CC-cee
Q 018665 190 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EG-VKM 264 (352)
Q Consensus 190 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~g-~~~ 264 (352)
|+++ ++++. .+.......+++.|++.+.++.++++.. .. +++.++++++++++.+.|+++ |+ +..
T Consensus 335 ---G~~~-~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~----~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~ 404 (472)
T 1ohv_A 335 ---GFFH-KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVINII----KR-EDLLSNAAHAGKVLLTGLLDLQARYPQFISR 404 (472)
T ss_dssp ---EEEE-CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHH----HH-TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEE
T ss_pred ---CccC-chhhc-ccccccccCccCccHHHHHHHHHHHHHH----Hh-CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence 6666 55542 2222334455678999999998888741 11 245566777777777777654 33 433
Q ss_pred cCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 265 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 265 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
+.+. |.++++++++.. ....+.+.|+++ ||.+.|++ .+++|++++. +++++++++++|+++
T Consensus 405 ~~~~-g~~~~~~~~~~~-----------~~~~~~~~l~~~-Gv~~~~~g----~~~iRi~~~~~~t~e~i~~~~~~l~~~ 467 (472)
T 1ohv_A 405 VRGR-GTFCSFDTPDES-----------IRNKLISIARNK-GVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDI 467 (472)
T ss_dssp EEEE-TTEEEEECSSHH-----------HHHHHHHHHHHT-TEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ecCC-ceEEEEEeCChh-----------HHHHHHHHHHHC-CeEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4444 455666765321 467899999875 99998853 5799998876 899999999999999
Q ss_pred Hhhh
Q 018665 343 LLTL 346 (352)
Q Consensus 343 ~~~~ 346 (352)
++++
T Consensus 468 l~~~ 471 (472)
T 1ohv_A 468 LADF 471 (472)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 8764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-24 Score=194.48 Aligned_cols=250 Identities=16% Similarity=0.165 Sum_probs=183.5
Q ss_pred CChhhhccchhhHHHHHHHHhcCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCCEEEecC-CCCCChHH---------
Q 018665 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPE--------- 75 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~---~~g~~~a~~~~~~~l~~~~~~vl~~~-~~~~~~~~--------- 75 (352)
+..+++ +.+|++++ .+..++ ++|+++|+..++.+++++||+|+++. +.|..+..
T Consensus 60 ~~~~Le------~~lA~l~g-------~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~ 126 (409)
T 3jzl_A 60 GRDTLE------RVYATVFK-------TEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQ 126 (409)
T ss_dssp HHHHHH------HHHHHHHT-------CSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSS
T ss_pred HHHHHH------HHHHHHhC-------CCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchh
Confidence 345666 99999986 344444 89999999999999999999999998 99999885
Q ss_pred -HHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcC----CCCCcccCCCHHHHHHHHHHHHh--CCCEEEEe
Q 018665 76 -MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS----PSNPTGSVYPKNLLDEIARIVAK--HPRLLVLS 148 (352)
Q Consensus 76 -~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~----p~nptG~~~~~~~l~~l~~~~~~--~~~~~liv 148 (352)
.++..|.+++.++++. ++.+|++++++++++++++|++++ |+||+|.+.+ +++|+++|++ + |+++++
T Consensus 127 ~~l~~~G~~~~~v~~~~--~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~---l~~I~~la~~~~~-~~~liv 200 (409)
T 3jzl_A 127 GSLKDFHIGYSSVPLLE--NGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEK---IKEMIVFVKNINP-EVIVFV 200 (409)
T ss_dssp SCTGGGTCEEEECCCCT--TSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHH---HHHHHHHHHHHCT-TCEEEE
T ss_pred hHHHHcCCEEEEeCCCC--CCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCcccc---HHHHHHHHHhhCC-CCEEEE
Confidence 4467899999999863 456899999999999999999999 9999998877 9999999999 9 999999
Q ss_pred cccccccccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhhhhc----cccCCChHHHHH
Q 018665 149 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQ----FTSGASSISQKA 223 (352)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 223 (352)
|++|+.+.+... +. ..+.+++++|++|.+|.+| ...||+++++++++.+...... ...++......+
T Consensus 201 D~a~~~~~~~~~---p~-----~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~ 272 (409)
T 3jzl_A 201 DNCYGEFVEYQE---PP-----EVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLE 272 (409)
T ss_dssp ECTTCTTTSSCC---SG-----GGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHH
T ss_pred eCCcccccccCC---cc-----ccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHHHH
Confidence 999986542211 11 1244599999999997444 3469999999999998764322 112222211222
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCC----ceEEEeecCCccCCcccCCCCCCChHHHHH
Q 018665 224 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSESLCR 299 (352)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (352)
+... ...+..+.++..+++..+.+.|+++ |+.+.+..+ ..++.+.+++. +...++++
T Consensus 273 ~l~g-------l~~~~~r~~~~~~~a~~la~~L~~~-g~~v~p~~~~~~~~~i~~i~l~~~-----------~~~~~~~~ 333 (409)
T 3jzl_A 273 MYQG-------FFLAPHVTAQAIKGARFTAAMLAEF-GVEADPVWDAPRTDLIQSVSFHNK-----------EKMVAFAQ 333 (409)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSCCEEECSCH-----------HHHHHHHH
T ss_pred HHHH-------HhhHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCCccEEEEEEeCCH-----------HHHHHHHH
Confidence 2222 2345566777888889999999988 666643221 22455666532 15667888
Q ss_pred HHHHc
Q 018665 300 YLLDK 304 (352)
Q Consensus 300 ~l~~~ 304 (352)
.|...
T Consensus 334 ~L~~~ 338 (409)
T 3jzl_A 334 AIQAA 338 (409)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88765
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=195.96 Aligned_cols=254 Identities=10% Similarity=0.063 Sum_probs=183.2
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEE--eCChHHHHHHHHHHhcCCCCEEEecC-CCCCChHH--------
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILV--SNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPE-------- 75 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~--~~g~~~a~~~~~~~l~~~~~~vl~~~-~~~~~~~~-------- 75 (352)
..+..+++ +.+|++++ ....+++ ++|+++|+..++.+++++||+|++++ +.|..+..
T Consensus 72 ~~~~~~Le------~~lA~l~g------~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~ 139 (427)
T 3i16_A 72 DIGRDSLD------AVYARVFN------TESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENS 139 (427)
T ss_dssp CHHHHHHH------HHHHHHHT------CSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCC
T ss_pred HHHHHHHH------HHHHHHhC------CcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccc
Confidence 33445667 99999986 2233333 88999999999999999999999999 99988874
Q ss_pred ---HHHhcCCeEEEecccCCCCcccCHHHHHhhcc--CCeeEEEEcC----CCCCcccCCCHHHHHHHHHHHHh--CCCE
Q 018665 76 ---MARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCS----PSNPTGSVYPKNLLDEIARIVAK--HPRL 144 (352)
Q Consensus 76 ---~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~--~~~~~i~i~~----p~nptG~~~~~~~l~~l~~~~~~--~~~~ 144 (352)
.++..|.+++.++++. ++.+|+++++++++ +++++|++++ |+||+|.+.+ +++|+++|++ + |+
T Consensus 140 ~~~~l~~~G~~~~~v~~~~--~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~d---l~~i~~la~~~~~-g~ 213 (427)
T 3i16_A 140 NMGSLKEFGINYKQVDLKE--DGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIED---IKSIVDCVKNIRK-DI 213 (427)
T ss_dssp SSCCTGGGTCEEEECCCCT--TSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHH---HHHHHHHHHHHCT-TS
T ss_pred hHHHHHHcCCEEEEecCcc--CCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHH---HHHHHHHHHHhCC-CC
Confidence 3467799999999864 34589999999998 7999999999 9999988766 9999999999 9 99
Q ss_pred EEEecccccccccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhhhhccccC--CCh-HH
Q 018665 145 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSG--ASS-IS 220 (352)
Q Consensus 145 ~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~~--~~~-~~ 220 (352)
++++|++|+.+.+... +. ..+.+++++|+||.+|.+| .+.|++++++++++.+.........+ .++ +.
T Consensus 214 ~livD~a~~~~~~~~~---p~-----~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~ 285 (427)
T 3i16_A 214 ICFVDNCYGEFMDTKE---PT-----DVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFG 285 (427)
T ss_dssp EEEEECTTTTTSSSSC---GG-----GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT
T ss_pred EEEEECCCccccccCC---cc-----ccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHH
Confidence 9999999986542211 11 1234599999999997444 56799999999999987743222211 121 22
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCC----ceEEEeecCCccCCcccCCCCCCChHH
Q 018665 221 QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSES 296 (352)
Q Consensus 221 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
++..++.. ...+..+.++..+++..+.+.|+++ +..+.+..+ ..++.+.+.+. +...+
T Consensus 286 --~a~~~l~g----l~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~~i~~i~l~~~-----------~~~~~ 347 (427)
T 3i16_A 286 --VVRSMYQG----LFLAPHISMEALKGAILCSRIMELA-GFEVMPKYDEKRSDIIQSIKFNDK-----------DKLIE 347 (427)
T ss_dssp --CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSCEEEECSSH-----------HHHHH
T ss_pred --HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCCccEEEEEEECCH-----------HHHHH
Confidence 12222221 3445667778888888999999988 666643221 22566666432 14667
Q ss_pred HHHHHHHc
Q 018665 297 LCRYLLDK 304 (352)
Q Consensus 297 ~~~~l~~~ 304 (352)
+++.|...
T Consensus 348 f~~~l~~~ 355 (427)
T 3i16_A 348 FCKGIQTG 355 (427)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhc
Confidence 88887754
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=204.31 Aligned_cols=303 Identities=12% Similarity=0.075 Sum_probs=205.4
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcc----
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL---- 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~---- 96 (352)
+.++++++ ..+.+++++|+++++..++.+++++||+|+++.++|.++...++..|.++++++...+ +++
T Consensus 212 e~la~l~G------~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~-~~g~~g~ 284 (755)
T 2vyc_A 212 KYAARVFG------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN-RYGIIGP 284 (755)
T ss_dssp HHHHHHHT------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC-TTSCBCC
T ss_pred HHHHHHhC------CCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC-ccccccc
Confidence 88888886 3456888899999999999999999999999999999999999999999999987643 222
Q ss_pred c-----CHHHHHhhccC--Ce--------eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccc-ccCCC
Q 018665 97 L-----DPKVLESKLTE--KS--------RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI-IYAPA 160 (352)
Q Consensus 97 ~-----d~~~l~~~l~~--~~--------~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~-~~~~~ 160 (352)
+ |++.|++++++ ++ +++++++| ||+|.+.+ +++|+++|+++ |+++++|++|+.. .+.+.
T Consensus 285 i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~-~~~livDeA~~~~~~~~~~ 359 (755)
T 2vyc_A 285 IYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKT-SDRLHFDEAWYGYARFNPI 359 (755)
T ss_dssp CCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTT-CSEEEEECTTCTTGGGCGG
T ss_pred cCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHc-CCEEEEECcCchhcccCcc
Confidence 4 99999999864 33 38888898 68999999 99999999999 9999999999743 22221
Q ss_pred --Ccccccc--CCCCCCceEEEeccccccccccce-eEEEEcChh--HH--HHHHhh-hhccccCCChHHHHHHHHHhcc
Q 018665 161 --THTSFAS--LPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKH--FV--AACNKI-QSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 161 --~~~~~~~--~~~~~~~~i~~~s~sK~~g~~g~~-~g~l~~~~~--~~--~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
...++.. .+...++++++.|+||.+ +|.+ .|++.++++ .+ ..+... ....+.+++.+..+++.+++..
T Consensus 360 ~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~ 437 (755)
T 2vyc_A 360 YADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSM 437 (755)
T ss_dssp GTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHH
T ss_pred cCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1112211 111245778999999987 4444 566666443 11 233222 2333456777777766666653
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcccCC---------ceecCCC---------------------------------
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGELEG---------VKMSEPQ--------------------------------- 268 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g---------~~~~~~~--------------------------------- 268 (352)
-. .+..+++.++..++.+.+++.|+++++ ++++.+.
T Consensus 438 l~--~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (755)
T 2vyc_A 438 MD--GNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPG 515 (755)
T ss_dssp HS--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTT
T ss_pred HH--hhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhccCcc
Confidence 11 222345566666666677777766544 4443221
Q ss_pred ----------Cc------eEEEeecCCccCCcccCC-CCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CH
Q 018665 269 ----------GA------FYLFIDFSTYYGSEAEGF-GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SL 329 (352)
Q Consensus 269 ----------~g------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~ 329 (352)
.+ ..+.+.+++. +. .+.+ ....++..+.+.|.+ +||.+... ..+.+|++++. ++
T Consensus 516 ~~~h~~~~~~~~~~~~Dp~~v~i~~~~~-~~-~G~~~~~g~~~~~l~~~L~~-~gI~~e~~----~~~~v~~~~~~g~t~ 588 (755)
T 2vyc_A 516 ESWHGFKDIPDNWSMLDPIKVSILAPGM-GE-DGELEETGVPAALVTAWLGR-HGIVPTRT----TDFQIMFLFSMGVTR 588 (755)
T ss_dssp CTTTCCTTCCTTSEEECTTEEEEECSCB-CT-TSSBCSSCCCHHHHHHHHHT-TTCCCSEE----CSSEEEEECCTTCCT
T ss_pred cccccccccCCCccccCCeEEEEEcCCC-CC-CCCccccCCcHHHHHHHHHH-CCCEEeec----CCCeEEEEECCCCCH
Confidence 12 1234444431 00 0000 001256889888876 68876442 47889999988 88
Q ss_pred HHHHHHHHHHHHHHhhh
Q 018665 330 TTLQAAVERIKKGLLTL 346 (352)
Q Consensus 330 ~~l~~~~~~l~~~~~~~ 346 (352)
++++++++.|+++.+.+
T Consensus 589 ~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 589 GKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999987655
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-27 Score=214.64 Aligned_cols=293 Identities=14% Similarity=0.084 Sum_probs=200.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHH----hcCC--eEEEecccCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMAR----IADA--TPVILPTRIS 92 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~----~~g~--~v~~i~~~~~ 92 (352)
+.+++++. ..+.+++++|+++|+..+++.+. ..+++|++.+++|+++...+. ..|+ .+..++.
T Consensus 147 e~L~~~~p------~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~--- 217 (465)
T 2yky_A 147 EAVCDRFP------SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY--- 217 (465)
Confidence 66666652 35789999999999999998753 345899999999987664333 2233 2222221
Q ss_pred CCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccC
Q 018665 93 ENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 168 (352)
Q Consensus 93 ~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~ 168 (352)
.|++.|+++++ +++++|+++..++++|.. .+.+++++|.++|+++ |+++|+||++. + ..+. ......
T Consensus 218 ----~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~-~-r~g~-~~a~~~- 288 (465)
T 2yky_A 218 ----NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRC-GALLIFDEVMT-S-RLSG-GGAQEM- 288 (465)
Confidence 27889999887 577887776656679965 4678899999999999 99999999999 6 3332 111111
Q ss_pred CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHh-----hhhccccCCChHHHHHHHHHhcccCCChHHHHHHHH
Q 018665 169 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 243 (352)
Q Consensus 169 ~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (352)
.+....+.|++|.+| +|+|+||+++++++++.+.. .....+++.|++.++++.++++... + +.+.+
T Consensus 289 ---~gv~pDi~t~sK~lg-~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~---~--~~~~~ 359 (465)
T 2yky_A 289 ---LGISADLTTLGKYIG-GGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY---T--RQAAS 359 (465)
Confidence 122234668999999 69999999999999998866 2344567899999999988887521 1 23455
Q ss_pred HHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCC--CCCChHHHHHHHHHccCEEeccCCCCCCC
Q 018665 244 AFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFG--KIENSESLCRYLLDKAQVALVPGDAFGDD 318 (352)
Q Consensus 244 ~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~gi~i~~g~~~~~~ 318 (352)
+++++.+++.+.|+++ .++....+..|.++++.+++.....+.... .......+.+.|+++ ||.+.|+. +.
T Consensus 360 ~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-GV~v~p~~-~~-- 435 (465)
T 2yky_A 360 DLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRK-GIYLAPRG-MY-- 435 (465)
Confidence 6666666666666654 123223345677788877641000000000 000255788888865 99999875 21
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 319 TCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
. +++..+++|+++++++|++++++++
T Consensus 436 ~---~s~~~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 436 A---LSLEIADAGRDAFAEALADFIGEQR 461 (465)
Confidence 1 6666799999999999999998764
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=191.18 Aligned_cols=251 Identities=11% Similarity=0.094 Sum_probs=181.5
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEE---eCChHHHHHHHHHHhcCCCCEEEecC-CCCCChHH-------
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPE------- 75 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~---~~g~~~a~~~~~~~l~~~~~~vl~~~-~~~~~~~~------- 75 (352)
..+..+++ +.+|++++ .+..++ ++|+++|+..++.+++++||+|++++ +.|..+..
T Consensus 73 ~~g~~~Le------~~lA~l~g-------~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~ 139 (427)
T 3hvy_A 73 DIGRDSLD------RVYANIFN-------TESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDS 139 (427)
T ss_dssp CHHHHHHH------HHHHHHHT-------CSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTT
T ss_pred chhHHHHH------HHHHHHhC-------CCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccc
Confidence 33455677 99999986 344455 78999999999999999999999998 99988773
Q ss_pred ----HHHhcCCeEEEecccCCCCcccCHHHHHhhcc--CCeeEEEEcC----CCCCcccCCCHHHHHHHHHHHHh--CCC
Q 018665 76 ----MARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCS----PSNPTGSVYPKNLLDEIARIVAK--HPR 143 (352)
Q Consensus 76 ----~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~--~~~~~i~i~~----p~nptG~~~~~~~l~~l~~~~~~--~~~ 143 (352)
.++..|.+++.++. .++.+|+++++++++ +++++|++++ |+||+|.+.+ +++|+++|++ + |
T Consensus 140 ~~~~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~d---l~~i~~ia~~~~~-g 212 (427)
T 3hvy_A 140 KKVGSLREYGVKYKMVDL---KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAE---IAEIIKSIREVNE-N 212 (427)
T ss_dssp CCSCCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHH---HHHHHHHHHHHCS-S
T ss_pred hhhhHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHH---HHHHHHHHHHhCC-C
Confidence 45678999999988 234689999999998 7999999999 9999988766 9999999999 9 9
Q ss_pred EEEEecccccccccCCCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhhhhcccc----CCCh
Q 018665 144 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTS----GASS 218 (352)
Q Consensus 144 ~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~----~~~~ 218 (352)
+++++|++|+.+.+.. .+. ..+.+++++|+||.+|.+| .+.|++++++++++.+......... +++.
T Consensus 213 ~~livD~a~~~~~~~~---~p~-----~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~ 284 (427)
T 3hvy_A 213 VIVFVDNCYGEFVEEK---EPT-----DVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTF 284 (427)
T ss_dssp SEEEEECTTCTTTSSS---CGG-----GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCT
T ss_pred CEEEEECCccccccCC---CCc-----ccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCH
Confidence 9999999998654221 111 1234599999999997444 4679999999999998774322221 2212
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCC----ceEEEeecCCccCCcccCCCCCCCh
Q 018665 219 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENS 294 (352)
Q Consensus 219 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~ 294 (352)
.....+... ...+..+.++..++...+.+.|+++ |+.+.+..+ ..++.+.+.+. +..
T Consensus 285 ~~a~~~~~g-------l~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~li~~~~l~~~-----------~~~ 345 (427)
T 3hvy_A 285 GVMRSLYEG-------LFMAPHVTIEAVKGAVFCARIMELA-GFDVLPKYNDKRTDIIQAIKFNDE-----------KKL 345 (427)
T ss_dssp TCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSEEEEECSSH-----------HHH
T ss_pred HHHHHHHHh-------HhHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCCceEEEEEeCCCH-----------HHH
Confidence 212222222 2334566777888888999999987 666643322 22566666432 145
Q ss_pred HHHHHHHHHc
Q 018665 295 ESLCRYLLDK 304 (352)
Q Consensus 295 ~~~~~~l~~~ 304 (352)
.++++.|...
T Consensus 346 ~~f~~~l~~~ 355 (427)
T 3hvy_A 346 IDFIKGIQTA 355 (427)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHhccc
Confidence 6777777653
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=191.31 Aligned_cols=250 Identities=15% Similarity=0.186 Sum_probs=178.6
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecC-CCCCChHHHH----------HhcCCeEEEecc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPEMA----------RIADATPVILPT 89 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~-~~~~~~~~~~----------~~~g~~v~~i~~ 89 (352)
+.++++++ .+....+++++ |+++|+..++.+++++||+|+++. +.|..+...+ +..|.+++.++.
T Consensus 72 ~~la~~~g---~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~ 147 (431)
T 3ht4_A 72 KVYADVFG---AEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPL 147 (431)
T ss_dssp HHHHHHTT---CSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCB
T ss_pred HHHHHHhC---CCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCC
Confidence 66666654 22112223344 778999999999999999999998 9999988654 458999999998
Q ss_pred cCCCCcccCHHHHHhhccCCeeEEEEc-CCCCCcccCCCHHHHHHHHHHHHh--CCCEEEEecccccccccCCCCccccc
Q 018665 90 RISENFLLDPKVLESKLTEKSRLLILC-SPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 90 ~~~~~~~~d~~~l~~~l~~~~~~i~i~-~p~nptG~~~~~~~l~~l~~~~~~--~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
+. ++.+|+++|++++++++++|+++ +|+||+|...+.+++++|+++|++ + |+++|+|++|+.+.+... +.
T Consensus 148 ~~--~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~-~~~livDea~~~~~~~~~---~~- 220 (431)
T 3ht4_A 148 TE--GGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKP-DVVVFVDNCYGEFIEEQE---PC- 220 (431)
T ss_dssp CT--TSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT-TCEEEEECTTCTTSSSCC---GG-
T ss_pred CC--CCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCC-CCEEEEeCCChhhccCCC---cc-
Confidence 74 46789999999999999999998 589999999999999999999999 9 999999999998654322 11
Q ss_pred cCCCCCCceEEEecccccccc-ccceeEEEEcChhHHHHHHhhhhcccc----CCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 167 SLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGPKHFVAACNKIQSQFTS----GASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~-~g~~~g~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
. .+.+++++|++|.+|. .+...|++++++++++.+......... +++.....++...+ ..+..+
T Consensus 221 ~----~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l-------~~~~~~ 289 (431)
T 3ht4_A 221 H----VGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGF-------FLAPHV 289 (431)
T ss_dssp G----TTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHH-------HHHHHH
T ss_pred c----cCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHh-------hhHHHH
Confidence 1 1345999999999863 124459999999999988764432221 22221122233332 334556
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCC----CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
.++..++...+.+.|+++ |+.+.+. ..+.++.+.+++. +...++++.|.+.
T Consensus 290 ~~~~~~~a~~l~~~L~~~-g~~v~p~~~~~~~~li~~i~l~~~-----------~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 290 AGQALKGAIFTAAFLEKL-GMNTSPAWNAPRTDLIQSVQFDDK-----------DRMIAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCCEESCTTSCCSSSCCEEECCCH-----------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhC-cCEecCCCCCCCccEEEEEEeCCH-----------HHHHHHHHHHHhc
Confidence 677778888888989887 6665422 2233556666532 1466788887765
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=187.13 Aligned_cols=285 Identities=12% Similarity=0.081 Sum_probs=204.5
Q ss_pred HHHHHHHHhcCCCCCC-CcEEE-eCChHHHHHHHHHHhcCC--CCEEEecCCCCCCh--HHHHHhcCCeEEEecccCCCC
Q 018665 21 QQFVINLKENGLSYTP-DQILV-SNGAKQSILQAVLAVCSP--GDEVIIPAPFWVSY--PEMARIADATPVILPTRISEN 94 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~-~~i~~-~~g~~~a~~~~~~~l~~~--~~~vl~~~~~~~~~--~~~~~~~g~~v~~i~~~~~~~ 94 (352)
+.++++++ ++. ++|++ ++|+|++++.++..+..+ ||++++....+++. ...++..|..++.++.+ .+
T Consensus 65 ~~la~ll~-----~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~--~~ 137 (377)
T 3e77_A 65 NLVRELLA-----VPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKL--GS 137 (377)
T ss_dssp HHHHHHHT-----CCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCC--SS
T ss_pred HHHHHHhC-----CCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccC--CC
Confidence 88888886 443 57888 589999999999998764 88988776655543 35667788888887775 33
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
+..++++++..+++++++|.+++..|.+|...| + +|+++ |+++++|.+++. +..+..+.. .+
T Consensus 138 ~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~p---i-----i~~~~-~~~~~vD~~q~~----g~~~id~~~----~~- 199 (377)
T 3e77_A 138 YTKIPDPSTWNLNPDASYVYYCANETVHGVEFD---F-----IPDVK-GAVLVCDMSSNF----LSKPVDVSK----FG- 199 (377)
T ss_dssp SCSCCCGGGCCCCTTCSCEEEESEETTTTEECS---S-----CCCCT-TCCEEEECTTTT----TSSCCCGGG----CS-
T ss_pred cCCCCChHHhccCCCccEEEEeCccCchheEch---h-----hhccC-CCEEEEEccccc----CCCCCchhh----cC-
Confidence 446778888888889999999988889999999 4 36788 999999999986 333333332 22
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHH----------hh--hhccccCCChHHHHHHHHHhcccCCChH-HHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN----------KI--QSQFTSGASSISQKAGVAALGLGYAGGE-VVSKM 241 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 241 (352)
+++.|.+|.+|.+| +|+++.++++++.+. .. ......+++....+++.++++.- ... .++++
T Consensus 200 -~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l--~~~GG~~~i 274 (377)
T 3e77_A 200 -VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWI--KNNGGAAAM 274 (377)
T ss_dssp -EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHH
T ss_pred -EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccCHHHH
Confidence 57789999998556 677777665432211 11 11223567888888888887741 134 68899
Q ss_pred HHHHHHHHHHHHHHhcccCCceecC----CCCceEEEeecCCccCCcccCCCCCCC-hHHHHHHHHHccCEEeccCCCCC
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSE----PQGAFYLFIDFSTYYGSEAEGFGKIEN-SESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
.++.+++.+++.+.|++++|+.+.. .+++..+.+.+++.... .+ ...+.+.+.+ .||.+.+|..
T Consensus 275 ~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~--------~~~~~~~l~~l~~-~Gi~~~~g~~-- 343 (377)
T 3e77_A 275 EKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGD--------DALEKRFLDKALE-LNMLSLKGHR-- 343 (377)
T ss_dssp HHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCC--------HHHHHHHHHHHHH-TTEESCBCCT--
T ss_pred HHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCc--------hhHHHHHHHHHHH-CCcEEeCCCC--
Confidence 9999999999999999988887542 13344566777653100 01 1356666665 4999988753
Q ss_pred CCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 317 DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 317 ~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
..+.+|+|+.. +++|++++++.|++++++.
T Consensus 344 ~~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 344 SVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 35679999987 8999999999999998764
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-22 Score=178.53 Aligned_cols=286 Identities=10% Similarity=0.071 Sum_probs=200.5
Q ss_pred ChhhhccchhhHHHHHHHHhcCCCCCC-CcEEE-eCChHHHHHHHHHHhcCCCCEEEecCCCCCC--hHHHHHhcCCeEE
Q 018665 10 TLQMRVLWSFVQQFVINLKENGLSYTP-DQILV-SNGAKQSILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPV 85 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~~~~~~~~~-~~i~~-~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~--~~~~~~~~g~~v~ 85 (352)
+.+.| +.++++++ ++. ++|++ |+|+|++++.++..+++++|++++....+++ +...++..| ++.
T Consensus 74 ~~~ar------~~la~ll~-----~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~ 141 (386)
T 3qm2_A 74 AEEAE------QDFRDLLN-----IPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQ 141 (386)
T ss_dssp CHHHH------HHHHHHHT-----CCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEE
T ss_pred HHHHH------HHHHHHhC-----CCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeE
Confidence 44566 89999997 433 46888 6999999999999999999988755444433 335567788 899
Q ss_pred Eeccc-CCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 86 ILPTR-ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 86 ~i~~~-~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
.++.+ .+.+..+++++++.++++++++|.+++..|.+|.. .| +++|. + |+++++|.+++. |..+.
T Consensus 142 ~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~p---i~~i~-----~-g~~~~vDa~qs~----g~~pi 208 (386)
T 3qm2_A 142 IIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDE---TPDFG-----P-EVVVTADFSSTI----LSAPL 208 (386)
T ss_dssp EEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCC---CCCCC-----T-TCCEEEECTTTT----TSSCC
T ss_pred EEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCc---hhhhc-----C-CCEEEEEccccc----CCCCC
Confidence 99886 12333367888888999999999998888899996 88 55553 7 999999999875 33334
Q ss_pred ccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHH----------hh--hhccccCCChHHHHHHHHHhccc
Q 018665 164 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN----------KI--QSQFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 164 ~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~l~~~ 231 (352)
.+..+ + +++.|.+|++|.+| +|+++.++++++.+. .. ......++|.....++.++++..
T Consensus 209 dv~~~----~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~ 280 (386)
T 3qm2_A 209 DVSRY----G--VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWL 280 (386)
T ss_dssp CGGGC----S--EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHH
T ss_pred Ccccc----C--EEEEecccccCCCc--cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 44332 2 56789999998444 788888776532111 11 11122467878888888887741
Q ss_pred CCChH-HHHHHHHHHHHHHHHHHHHhcccCCce-ec-C--CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccC
Q 018665 232 YAGGE-VVSKMVKAFRERRDFLVKSFGELEGVK-MS-E--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 306 (352)
Q Consensus 232 ~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~-~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 306 (352)
... .++++.++.+++++++.+.|+++ ++. .. . .+....+.+.+++.. ...++...|.+ .|
T Consensus 281 --~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~~-----------~~~~~~~~L~~-~g 345 (386)
T 3qm2_A 281 --KAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADNT-----------LDKVFLEESFA-AG 345 (386)
T ss_dssp --HHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSGG-----------GHHHHHHHHHH-TT
T ss_pred --HHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCCcc-----------ccHHHHHHHHH-CC
Confidence 133 58888999999999999999987 542 21 1 123345666766420 22567777665 49
Q ss_pred EEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 307 VALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 307 i~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
|.+..|..+ .+.+|+|+.. +++|++++++.|+++.++
T Consensus 346 I~~~~g~~~--~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 346 LHALKGHRV--VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp EECCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEeCCCCC--cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 998877543 4569999987 899999999999999875
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=174.84 Aligned_cols=279 Identities=12% Similarity=0.105 Sum_probs=197.5
Q ss_pred HHHHHHHHhcCCCCC-CCcEEE-eCChHHHHHHHHHHhcCCCCEEEecCCCCC--ChHHHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYT-PDQILV-SNGAKQSILQAVLAVCSPGDEVIIPAPFWV--SYPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~-~~~i~~-~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~--~~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ ++ +++|++ |+|+|++++.++..+. ++|++++....++ .+...++..|.++..++.+.++.+.
T Consensus 57 ~~la~ll~-----~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~ 130 (361)
T 3m5u_A 57 EKAKKLYE-----LNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFD 130 (361)
T ss_dssp HHHHHHHT-----CCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSC
T ss_pred HHHHHHhC-----CCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCC
Confidence 88888886 43 457887 9999999999999988 6776532222222 2345667889999999987544222
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
++++. + +++++++|.+++..|.+|...|. | + ++ |+++++|.+++. +..+..+.. -.+
T Consensus 131 ~~~~~--~-l~~~t~lv~~~~~e~~tG~~~~~-----i---~-~~-~~~~~vD~~q~~----g~~~id~~~------~d~ 187 (361)
T 3m5u_A 131 HIPRV--E-FSDNADYAYICSNNTIYGTQYQN-----Y---P-KT-KTPLIVDASSDF----FSRKVDFSN------IAL 187 (361)
T ss_dssp SCCCC--C-CCTTSSEEEEESEETTTTEECSS-----C---C-CC-SSCEEEECGGGT----TSSCCCCTT------EEE
T ss_pred cCChh--h-cCCCCCEEEEeCCCCCcceeCCc-----c---c-cc-CCEEEEEccccc----CCCCCCccc------CCE
Confidence 45555 4 88899999998888899998772 2 2 37 999999999986 332333321 237
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHh-----------h--hhccccCCChHHHHHHHHHhcccCCChH-HHHHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNK-----------I--QSQFTSGASSISQKAGVAALGLGYAGGE-VVSKMV 242 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 242 (352)
++.|.+|++|.+| +|+++.++++.+.+.. . ......+++.....++.++++... .. .++++.
T Consensus 188 ~~~s~~K~~gp~G--~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~--~~gG~~~i~ 263 (361)
T 3m5u_A 188 FYGGVQKNAGISG--LSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLL--NQGGLDKVH 263 (361)
T ss_dssp EEEETTTTSSCTT--CEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH--TTTCHHHHH
T ss_pred EEEechhccCCCc--cEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHH--HccCHHHHH
Confidence 8899999998444 7899999988776643 0 112224678888888888877421 23 578888
Q ss_pred HHHHHHHHHHHHHhcccCCc-eecCC---CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCC
Q 018665 243 KAFRERRDFLVKSFGELEGV-KMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 318 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~-~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~ 318 (352)
++.+++.+++.+.|++++++ ....+ +....+.+.+|+..+ -..++...|.++ ||.+.+|... .
T Consensus 264 ~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~----------~~~~~~~~L~~~-gI~~~~g~~~--~ 330 (361)
T 3m5u_A 264 EKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKD----------LEPLFVKEAEEA-GMIGLKGHRI--L 330 (361)
T ss_dssp HHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSCTT----------HHHHHHHHHHHT-TEECCBCCTT--T
T ss_pred HHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCchh----------hhHHHHHHHHHC-CCEEecCCCc--c
Confidence 99999999999999998666 44321 233446666664100 124677777654 9999876432 3
Q ss_pred CeEEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 319 TCIRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 319 ~~iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
+.+|+|+.. +++|++++++.|+++.++
T Consensus 331 g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 331 GGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 679999987 899999999999999875
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=177.05 Aligned_cols=288 Identities=14% Similarity=0.100 Sum_probs=183.6
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHH-h-----cCCeEEEecccCCCCcccCHHHHHhhc
Q 018665 35 TPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMAR-I-----ADATPVILPTRISENFLLDPKVLESKL 106 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~-~-----~g~~v~~i~~~~~~~~~~d~~~l~~~l 106 (352)
..+.+++++||++|++.+++... ...++|+....+|++.....- . .......+|. .|++.+++.+
T Consensus 142 ~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l 214 (454)
T 4ao9_A 142 QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQI 214 (454)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHH
T ss_pred CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHH
Confidence 56899999999999999998753 234688888888876432111 1 1112222221 2778888877
Q ss_pred c---CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccc
Q 018665 107 T---EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 182 (352)
Q Consensus 107 ~---~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 182 (352)
+ +++.+|++...++..|.+ ++++++++|.++|++| |+++|+||++.+ ..|... ......-.+| +.+++
T Consensus 215 ~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~-g~lLI~DEV~tG--R~G~~~-a~e~~gv~PD----i~t~g 286 (454)
T 4ao9_A 215 ERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQV-GALLVFDEVMTS--RLAPHG-LANKLGIRSD----LTTLG 286 (454)
T ss_dssp HHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHH-TCEEEEECTTGG--GGSTTC-HHHHHTCCCS----EEEEE
T ss_pred hhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhc-CCEEEEECCCcC--CCcccc-chhccCCCCc----EEEec
Confidence 5 467778877767667755 5678999999999999 999999999984 333321 1111111112 56788
Q ss_pred cccccccceeEEEEcChhHHHHHHhh----hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 018665 183 KAFAMTGWRLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 258 (352)
Q Consensus 183 K~~g~~g~~~g~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 258 (352)
|.+| +|+++|.+.+++++++.+... ....+++.|++.++++.++|+.-.. ++..+++.+.-+..++.|.+.+++
T Consensus 287 K~lg-gG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~L~~l~~~ 364 (454)
T 4ao9_A 287 KYIG-GGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-PEAAGALAERGEALRARLNALCAN 364 (454)
T ss_dssp GGGG-TTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccC-CCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHhh
Confidence 9998 889999999999998877532 2344678899999999999876321 343444444334344444444444
Q ss_pred cCCceecCCCCceEEEeecCCccCCcccCCCCCCC---hHHHHHHHHHccCEEeccCCCCCCCCeEEEEeecCHHHHHHH
Q 018665 259 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN---SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAA 335 (352)
Q Consensus 259 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~~~~~l~~~ 335 (352)
. ++......-|.++.+.+.+........... .+ ...+...|+++ ||++.|. +.+.++++.|++|||++
T Consensus 365 ~-~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~-~d~~~~~~~~~~ll~~-Gv~~~p~------~~~~~s~~~T~~dId~~ 435 (454)
T 4ao9_A 365 E-GVAMQFTGIGSLMNAHFVQGDVRSSEDLAA-VDGRLRQLLFFHLLNE-DIYSSPR------GFVVLSLPLTDADIDRY 435 (454)
T ss_dssp H-TBSCEEEEETTEEEEESCCSCCCSGGGGTT-CCHHHHHHHHHHHHHT-TEECCTT------CEEECCTTCCHHHHHHH
T ss_pred C-CCCEEEeeeceEEEEEEecCCCCCHHHHHh-hhHHHHHHHHHHHHHC-CEEEcCC------CCEEEeCCCCHHHHHHH
Confidence 3 322221223444555543221111110000 01 23566777876 9998774 34566666799999999
Q ss_pred HHHHHHHHhhhCC
Q 018665 336 VERIKKGLLTLRP 348 (352)
Q Consensus 336 ~~~l~~~~~~~~~ 348 (352)
+++|++++.++..
T Consensus 436 l~al~~~l~~~~a 448 (454)
T 4ao9_A 436 VAAIGSFIGGHGA 448 (454)
T ss_dssp HHHHHHHHHHSGG
T ss_pred HHHHHHHHHhccc
Confidence 9999999988654
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=181.09 Aligned_cols=299 Identities=11% Similarity=0.144 Sum_probs=195.3
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCccc---
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL--- 97 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~--- 97 (352)
+.+|++++ ....+++++|++.++..++.+++++||.|+++.++|.++...+...|.++++++...+ .+.+
T Consensus 202 ~~lA~~fG------a~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~-~~gi~~~ 274 (715)
T 3n75_A 202 QYIARVFN------ADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRN-AYGILGG 274 (715)
T ss_dssp HHHHHHHT------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBC-TTCCBCC
T ss_pred HHHHHHhC------CCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecccc-ccccccC
Confidence 99999997 4556777788889999999999999999999999999999999999999999987643 3433
Q ss_pred ------CHHHHHhhccC--Cee---EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc-cCCCCcccc
Q 018665 98 ------DPKVLESKLTE--KSR---LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSF 165 (352)
Q Consensus 98 ------d~~~l~~~l~~--~~~---~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~-~~~~~~~~~ 165 (352)
|++.|++++++ +++ ++++++| |++|.+.+ +++|.++|+++ + +++||+|+... +.+.. +..
T Consensus 275 i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~-~--livDEAH~~~~~f~~~~-~~~ 346 (715)
T 3n75_A 275 IPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK-S--IHFDSAWVPYTNFSPIY-EGK 346 (715)
T ss_dssp CCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS-E--EEEECTTCTTGGGSGGG-TTS
T ss_pred cccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcC-c--EEEccccccccccCCcc-ccc
Confidence 89999999963 334 7899999 99999999 88888888766 5 78999998542 22211 111
Q ss_pred ccCCC--CCCce-EEEeccccccccccc-eeEEEEcChhH-HHHHHhh-hhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 166 ASLPG--MWERT-LTVNGFSKAFAMTGW-RLGYIAGPKHF-VAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 166 ~~~~~--~~~~~-i~~~s~sK~~g~~g~-~~g~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
..+.. ..+.+ +++.|+||+++ |+ ..|++.++.++ ...+... ...++.++|.+..+++.++++.- .....+
T Consensus 347 ~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~--~~~~g~ 422 (715)
T 3n75_A 347 CGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMM--KGNAGK 422 (715)
T ss_dssp STTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHH--SHHHHH
T ss_pred cccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH--HhhccH
Confidence 11111 11332 56999999985 33 46787775542 2223322 23345678888887777776531 112344
Q ss_pred HHHHHHHHHHHHHHHHhcccCC------ceecCCC-----------------------Cce------EEEeecCCccCCc
Q 018665 240 KMVKAFRERRDFLVKSFGELEG------VKMSEPQ-----------------------GAF------YLFIDFSTYYGSE 284 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g------~~~~~~~-----------------------~g~------~~~~~~~~~~~~~ 284 (352)
++++++.++.+.+++.|+++++ +.+..+. .+. -+.+.+++..
T Consensus 423 ~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~--- 499 (715)
T 3n75_A 423 RLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGME--- 499 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCC---
Confidence 5666667777777777765532 2332211 011 1233333210
Q ss_pred ccC-C-CCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 285 AEG-F-GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 285 ~~~-~-~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
..| + .....+..+.+.|.+ +||.+.-. ....+-+-++. ++++++++++.|.++.+.+
T Consensus 500 ~~G~~~~~Gi~g~~~~~~L~~-~~I~~E~~----d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~ 560 (715)
T 3n75_A 500 KDGTMSDFGIPASIVAKYLDE-HGIVVEKT----GPYNLLFLFSIGIDKTKALSLLRALTDFKRAF 560 (715)
T ss_dssp TTSCBCSSCCCHHHHHHHHHH-TTCCCSEE----ETTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCCcHHHHHHHHHH-CCCEEEec----CCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 000 0 001267788888865 48877553 24444444443 8899999999998876654
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-20 Score=169.84 Aligned_cols=291 Identities=13% Similarity=0.128 Sum_probs=189.7
Q ss_pred CCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHH-HHHhcC-------------CeEEEecccCCC----Cc
Q 018665 36 PDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPE-MARIAD-------------ATPVILPTRISE----NF 95 (352)
Q Consensus 36 ~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~-~~~~~g-------------~~v~~i~~~~~~----~~ 95 (352)
.+.+++++||++|++.+++... ....+|+....+|++... .+...+ ..+..+|.+... ..
T Consensus 125 ~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~ 204 (456)
T 4atq_A 125 AKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPE 204 (456)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTT
T ss_pred CcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCc
Confidence 4579999999999999998742 234688888888877653 332221 234444443210 00
Q ss_pred ccCHH-------HHHhhcc-CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccc
Q 018665 96 LLDPK-------VLESKLT-EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 166 (352)
Q Consensus 96 ~~d~~-------~l~~~l~-~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~ 166 (352)
..+.+ .+++.+. +++.++++...+...|.. .|++.+++|.++|++| |+++|+||++.++..+|.. ....
T Consensus 205 ~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~-gillI~DEV~tG~GRtG~~-~a~e 282 (456)
T 4atq_A 205 ITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEK-GIVFIADEVQSGFCRTGEW-FAVD 282 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGG
T ss_pred ccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhc-CCceEecccccccCCcccc-cccc
Confidence 11222 2333332 367777777777767765 5677999999999999 9999999999998777752 2222
Q ss_pred cCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 018665 167 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246 (352)
Q Consensus 167 ~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 246 (352)
...-.+| +.+++|.+| +|+++|.+++++++.+.+.......+++.|+++.+++.+.|+... + +.+.++.+
T Consensus 283 ~~gv~PD----ivt~gK~lg-gg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~--~---~~l~~~~~ 352 (456)
T 4atq_A 283 HEGVVPD----IITMAKGIA-GGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTME--Q---HDLNGRAR 352 (456)
T ss_dssp GTTCCCS----EEEECGGGG-TTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHH--H---TTHHHHHH
T ss_pred ccCCCCc----hhhhhhccc-CcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHh--h---ccHHHHHH
Confidence 2222122 566789998 899999999999998888776677889999999999999997521 1 12233333
Q ss_pred HHHHHHHHHhcc----cC-----CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC
Q 018665 247 ERRDFLVKSFGE----LE-----GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 317 (352)
Q Consensus 247 ~~~~~l~~~l~~----~~-----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~ 317 (352)
+.-+++.+.|++ ++ -+.-+. ..|.++.+++......... ......+.+.++++ |+.+.+++. .
T Consensus 353 ~~g~~l~~~L~~l~~~~~~~~~~~v~~VR-G~Gl~~giel~~~~~~~~~----~~~~~~v~~~~~~~-Gvl~~~~g~--~ 424 (456)
T 4atq_A 353 HIEELALGKLRELAAELSAGGGSVVGDIR-GRGAMLAIELVQPGSKEPN----AELTKAVAAACLKE-GVIILTCGT--Y 424 (456)
T ss_dssp HHHHHHHHHHHHHHHHCC-----CEEEEE-EETTEEEEEEBCTTSCCBC----HHHHHHHHHHHHHT-TEECEEECT--T
T ss_pred HHHHHHHHHHHHHHHhcccccCCceEEee-ecceEEEEEEecCCCCCcC----HHHHHHHHHHHHHC-CCEEEecCC--C
Confidence 333344443332 21 122222 2355666776432111000 00245788888876 899876532 2
Q ss_pred CCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 318 DTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 318 ~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.+|+.++. +++++++++++|++++++.
T Consensus 425 ~~~irl~PpL~it~~~id~~l~~l~~al~a~ 455 (456)
T 4atq_A 425 GNVIRLLPPLVISDELLIDGLEVLAAAIKAH 455 (456)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 5789999887 9999999999999999764
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-19 Score=164.48 Aligned_cols=293 Identities=12% Similarity=0.077 Sum_probs=186.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc--------CCCCEEEecCCCCCChH-HHHHhcCC-----------eEEEecccCC--
Q 018665 35 TPDQILVSNGAKQSILQAVLAVC--------SPGDEVIIPAPFWVSYP-EMARIADA-----------TPVILPTRIS-- 92 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~--------~~~~~vl~~~~~~~~~~-~~~~~~g~-----------~v~~i~~~~~-- 92 (352)
.-+.+++++||++|++.+++... ....+|+....+|++.. ..+...|. .+..++.+..
T Consensus 127 ~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~ 206 (473)
T 4e3q_A 127 DSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWR 206 (473)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHH
T ss_pred CccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccc
Confidence 34689999999999999998742 12357888887777644 33333221 2223332210
Q ss_pred --CCcc-------cCHHHHHhhcc----CCeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 93 --ENFL-------LDPKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 93 --~~~~-------~d~~~l~~~l~----~~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
.... ...+++++.+. +++.++++...+...|.. +|++.+++|.++|++| |+++|.||++.+|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~-gilLI~DEV~tGfGRt 285 (473)
T 4e3q_A 207 YGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY-DIPVISDEVICGFGRT 285 (473)
T ss_dssp HSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCCEEEECTTTSSSTT
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhccc-ceEEeccCccccCCcc
Confidence 0000 01234444442 356677777777777765 5677999999999999 9999999999999777
Q ss_pred CCCccccccCCCCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh-------hhccccCCChHHHHHHHHHhcc
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
|... ........+| +.+++|.++ +| +++|.+++++++.+.+... .+.++++.|+++.+++.+.|+.
T Consensus 286 G~~f-a~e~~gv~PD----i~t~~K~l~-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~ 359 (473)
T 4e3q_A 286 GNTW-GCVTYDFTPD----AIISSKNLT-AGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDV 359 (473)
T ss_dssp SSSC-HHHHTTCCCS----EEEECGGGG-TTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHH
T ss_pred cchh-HHHhcCCCCC----hHHhccccc-CCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhh
Confidence 6532 2122222122 556789998 66 8999999999998887543 2445778999999999999875
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcc---cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
-. -+.+.++.++.-+++.+.|++ .|.+.-+.. .|.++.+++......+..-.........+.+.++++ |+
T Consensus 360 i~-----~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG-~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~-Gl 432 (473)
T 4e3q_A 360 VM-----NEGLAENVRRLAPRFEERLKHIAERPNIGEYRG-IGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL-GL 432 (473)
T ss_dssp HH-----HSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TE
T ss_pred hc-----cccHHHHHHHHHHHHHHHHHHHhcCCCeeEEee-cceEEEEEEecCccccccccccHHHHHHHHHHHHHC-Cc
Confidence 21 122333444444455555443 345443332 355566665322111100000001256788888876 99
Q ss_pred EeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 308 ALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.+. .+.+|++++. +++++++++++|+++++++
T Consensus 433 l~~~~-----g~~i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 433 ICRPL-----GQSVVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp ECEEE-----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 98874 4689998876 9999999999999998875
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-19 Score=173.80 Aligned_cols=230 Identities=13% Similarity=0.113 Sum_probs=150.7
Q ss_pred HHHHhhcc--------CCeeEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCC
Q 018665 100 KVLESKLT--------EKSRLLILCSP-SNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 169 (352)
Q Consensus 100 ~~l~~~l~--------~~~~~i~i~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~ 169 (352)
+.|++.++ +++++|++... ++..|.. +|.+.+++|.++|++| |+++|+||++.+++.+|... ......
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~-gilLI~DEV~tGfGRtG~~f-a~e~~g 654 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNR-KIPVIFDEVFTGFWRLGVET-TTELLG 654 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHT-TCCEEEECTTTTTTTTSBSS-THHHHS
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHc-CCeEEEEcCccccccCCCch-hhHhcC
Confidence 56777664 35667777775 7777765 5788999999999999 99999999999987777532 222222
Q ss_pred CCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhh------hhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 170 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 170 ~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
..++ +.+++|.++ +| +++|++++++++++.+... ...++++.|+++++++.++++.-.. ++..+++.
T Consensus 655 v~PD----iitlsK~L~-gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~-~~l~~~~~ 728 (831)
T 4a0g_A 655 CKPD----IACFAKLLT-GGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKD-PETNHNIT 728 (831)
T ss_dssp SCCS----EEEECGGGG-TTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHC-TTTCTTBC
T ss_pred CCCc----EEEEecccc-cCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 1112 447999998 67 7999999999998887542 1345678899999999998875111 11111111
Q ss_pred ---HHHHH-HHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCC
Q 018665 243 ---KAFRE-RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 318 (352)
Q Consensus 243 ---~~~~~-~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~ 318 (352)
+++++ ..+.+.+.+++.|.+..+... |.++.+++...... ..+ ....+.++.+.|+++ |+.+.|. .
T Consensus 729 ~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~--~~~-~~~~a~~~~~~l~e~-Gv~v~p~-----g 798 (831)
T 4a0g_A 729 SQGKTLRELWDEELVQQISSHSAVQRVVVI-GTLFALELKADASN--SGY-ASLYAKSLLIMLRED-GIFTRPL-----G 798 (831)
T ss_dssp TTSSBBCCCSCHHHHHHHHHSTTEEEEEEE-TTEEEEEEC------------CHHHHHHHHHHHHT-TEECCCB-----T
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceeEeec-ccEEEEEEecCccc--ccc-chHHHHHHHHHHHHC-CcEEEec-----C
Confidence 11111 012344445555565555433 45566665321100 000 000356788888876 9999885 4
Q ss_pred CeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 319 TCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 319 ~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
+.+|++++. ++++|++++++|+++++++.
T Consensus 799 ~~lrl~pp~~~t~e~id~~~~~l~~~l~~l~ 829 (831)
T 4a0g_A 799 NVIYLMCGPCTSPEICRRLLTKLYKRLGEFN 829 (831)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 799999765 99999999999999998764
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-17 Score=147.81 Aligned_cols=308 Identities=18% Similarity=0.175 Sum_probs=202.3
Q ss_pred HHHHH-HHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCC----CCEEEecCCCCCChHHHHHhcCCeEEEecccCC-CC
Q 018665 21 QQFVI-NLKENGLSYTPDQILVSNGAKQSILQAVLAVCSP----GDEVIIPAPFWVSYPEMARIADATPVILPTRIS-EN 94 (352)
Q Consensus 21 ~~ia~-~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~----~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~-~~ 94 (352)
+.++. ++...|++ .....++++|+|.++..++.+.+++ ++.|+++..+|.+...++...|.++++++...+ +.
T Consensus 119 n~l~ld~L~~~G~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~ 197 (501)
T 3hl2_A 119 NSLVLDIIKLAGVH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDE 197 (501)
T ss_dssp HHHHHHHHHHTTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTE
T ss_pred HHHHHHHHHHcCCC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccc
Confidence 44433 44466765 4567999999998888777776653 499999999999999999999999999987422 34
Q ss_pred cccCHHHHHhhccC---CeeEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc-cCCCCccccccCC
Q 018665 95 FLLDPKVLESKLTE---KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLP 169 (352)
Q Consensus 95 ~~~d~~~l~~~l~~---~~~~i~i~~p-~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~-~~~~~~~~~~~~~ 169 (352)
..+|++.+++++++ +..++++.++ +|..+.+-+ +++|+++|++| |++++||+||+... +....+.+...+.
T Consensus 198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~-gIpllVDeAhGah~~~~~~lp~sA~~~G 273 (501)
T 3hl2_A 198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR---LEELAVICANY-DIPHIVNNAYGVQSSKCMHLIQQGARVG 273 (501)
T ss_dssp EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTCTTCHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc---HHHHHHHHHHc-CCeEEEeCcchhhhhhhhhhHHHHHhcC
Confidence 67899999999964 3344454444 554456677 99999999999 99999999998532 1011111222222
Q ss_pred CCCCceEEEeccccccccccceeEEEE-cChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Q 018665 170 GMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248 (352)
Q Consensus 170 ~~~~~~i~~~s~sK~~g~~g~~~g~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 248 (352)
.-++++.|.+|.+- .-++.+.+. -++++++.+..... ...+.++.....+..+.. +.+.++++.++..++
T Consensus 274 ---rAD~vVqS~HK~ll-vpIGG~ii~~~d~e~l~~~~~~yP--Gr~S~Spsldl~~tLL~l---Gr~Gy~~ll~e~~el 344 (501)
T 3hl2_A 274 ---RIDAFVQSLDKNFM-VPVGGAIIAGFNDSFIQEISKMYP--GRASASPSLDVLITLLSL---GSNGYKKLLKERKEM 344 (501)
T ss_dssp ---CCCEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHHTSC--SCBCSHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred ---CCcEEEecccccce-eecCceEEEeCCHHHHHHHHHhCC--CCCCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 13489999999984 333444443 36677777644221 112344444455555554 367778899999999
Q ss_pred HHHHHHHhccc---CCceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE----eccCC-------
Q 018665 249 RDFLVKSFGEL---EGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA----LVPGD------- 313 (352)
Q Consensus 249 ~~~l~~~l~~~---~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~----i~~g~------- 313 (352)
.+++.+.|+++ .|-+++.. ....-+.+.+....... ......+.-.|..+ +|. |.+|.
T Consensus 345 a~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~------~~~~t~~gs~Lf~r-~vsG~Rvv~~~~~~~i~g~ 417 (501)
T 3hl2_A 345 FSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHR------DKAVTQLGSMLFTR-QVSGARVVPLGSMQTVSGY 417 (501)
T ss_dssp HHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTT------SCHHHHHHHHHHHT-TCCSCEEECTTCCEEETTE
T ss_pred HHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccc------cccHHHHHHHHHhc-CCCcceeecCCCceEECCe
Confidence 99999998875 24444432 23333444443321000 01355777788876 442 33443
Q ss_pred ---CCCC------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCCC
Q 018665 314 ---AFGD------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 314 ---~~~~------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
.|+. ..|+-++.+. +.+|++.++++|.+++.+++.+
T Consensus 418 ~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 418 TFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464 (501)
T ss_dssp EESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred eecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2321 3577777776 9999999999999999988663
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-16 Score=140.76 Aligned_cols=277 Identities=13% Similarity=0.091 Sum_probs=177.8
Q ss_pred cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH--------HhcC--CeEEEecccCCCCcccCHHHHHhhcc
Q 018665 38 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA--------RIAD--ATPVILPTRISENFLLDPKVLESKLT 107 (352)
Q Consensus 38 ~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~--------~~~g--~~v~~i~~~~~~~~~~d~~~l~~~l~ 107 (352)
+|.. .|++.|+..++.+++++||+|+..+..+.++...- ...| +++..++++. .+..+|.|++++...
T Consensus 123 NVQP-~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~-~t~~IDyd~~~~~A~ 200 (490)
T 3ou5_A 123 NVQP-YSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP-KTGLIDYNQLALTAR 200 (490)
T ss_dssp ECCC-SSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEET-TTTEECHHHHHHHHH
T ss_pred CCCc-CCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCC-CCCcccHHHHHHHHh
Confidence 4444 45668888999999999999998887766654321 1122 3555666664 445699999999886
Q ss_pred -CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCCCccccccCCCCCCceEEEecccccc
Q 018665 108 -EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAF 185 (352)
Q Consensus 108 -~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 185 (352)
.+|++|++-...+| ..+| .+++.++|++- |.++++|-+|. ++...|..+.++. .. .++++|.+|+|
T Consensus 201 ~~kPklIi~G~SaY~--r~id---~~~~reIAd~v-GA~Lm~DmAHiaGLVA~g~~psP~~-~A-----DvVTtTTHKTL 268 (490)
T 3ou5_A 201 LFRPRLIIAGTSAYA--RLID---YARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPFK-HA-----DIVTTTTHKTL 268 (490)
T ss_dssp HHCCSEEEECCSSCC--SCCC---HHHHHHHHHHH-TCEEEEECGGGHHHHHTTSSCCGGG-TC-----SEEEEESSSTT
T ss_pred hcCCCeEEECCccCc--cccC---HHHHHHHHhhc-ccEEEechhhhhhhhcccccCCccc-cc-----eEEeccccccc
Confidence 48999887555554 4567 88999999999 99999999987 4444454444443 22 28999999998
Q ss_pred ccccceeEEEEcCh---------------hHHHHHHhhhhccccCCChHHHHHH-HHHhcccCCChHHHHHHHHHHHHHH
Q 018665 186 AMTGWRLGYIAGPK---------------HFVAACNKIQSQFTSGASSISQKAG-VAALGLGYAGGEVVSKMVKAFRERR 249 (352)
Q Consensus 186 g~~g~~~g~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (352)
.|.|.|.|++++ ++.+++.+..-+...+.+.+...++ +.++... ....+.+-.+++.++.
T Consensus 269 --rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea--~~p~fk~Ya~qVv~NA 344 (490)
T 3ou5_A 269 --RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA--CTPMFREYSLQVLKNA 344 (490)
T ss_dssp --CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHH
T ss_pred --cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHH--HhHhHHHHHHHHHHHH
Confidence 788999999765 4556666543333333333333333 3334321 1345677778888899
Q ss_pred HHHHHHhcccCCceecC-CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-----CCCeEEE
Q 018665 250 DFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRI 323 (352)
Q Consensus 250 ~~l~~~l~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-----~~~~iRi 323 (352)
+.|.+.|.+. |+.++. ......+++++.... .+..+..+.|. +.||.+.-....+ .+..|||
T Consensus 345 kaLA~~L~~~-G~~vvsGgTdnHlvLvDl~~~g----------~tG~~ae~~Le-~agItvNkN~iP~D~sp~~~SGiRi 412 (490)
T 3ou5_A 345 RAMADALLER-GYSLVSGGTDNHLVLVDLRPKG----------LDGARAERVLE-LVSITANKNTCPGDRSAITPGGLRL 412 (490)
T ss_dssp HHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGT----------CCHHHHHHHHH-HTTEECEEECCTTCCCSSSCSEEEE
T ss_pred HHHHHHHHhC-CCeeecCCCCceEEEEeccccC----------CCHHHHHHHHH-HcCcEECCCCCCCCCCCCCCCeeEE
Confidence 9999999987 998874 344556777875431 15555555544 5699875433222 2457999
Q ss_pred Eeec------CHHHHHHHHHHHHHHHh
Q 018665 324 SYAA------SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 324 ~~~~------~~~~l~~~~~~l~~~~~ 344 (352)
..+. .++|+++..+.|.+++.
T Consensus 413 GTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 413 GAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp ESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 8864 67888888888877764
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-16 Score=140.01 Aligned_cols=308 Identities=18% Similarity=0.166 Sum_probs=189.8
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCC----CCEEEecCCCCCChHHHHHhcCCeEEEecccC-CCC
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSP----GDEVIIPAPFWVSYPEMARIADATPVILPTRI-SEN 94 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~----~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~-~~~ 94 (352)
+.+..++. ..|.+ +....++++|+|++...++.+.+++ ++.|+++..+|.+...++...|+.+++++... +..
T Consensus 101 ~~~~~~~~~~lGlp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~ 179 (450)
T 3bc8_A 101 NSLVLNVIKLAGVH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDE 179 (450)
T ss_dssp HHHHHHHHHHHTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTE
T ss_pred HHHHHHHHHhCCCC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCcc
Confidence 55555555 44543 3456789999986555555554443 78999999999999999999999999997642 245
Q ss_pred cccCHHHHHhhccC---CeeEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC-CccccccCC
Q 018665 95 FLLDPKVLESKLTE---KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLP 169 (352)
Q Consensus 95 ~~~d~~~l~~~l~~---~~~~i~i~~p-~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~-~~~~~~~~~ 169 (352)
+.+|++.|++++++ +..++++.+| ++.+|.+-| +++|+++|++| |++++||+||+....... .+.+....
T Consensus 180 ~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~-gi~l~VD~A~G~~~~~~~~l~~~a~~~- 254 (450)
T 3bc8_A 180 LRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANY-DIPHVVNNAYGLQSSKCMHLIQQGARV- 254 (450)
T ss_dssp EECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHHHHHH-
T ss_pred CCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC---HHHHHHHHHHC-CCeEEEECCCchhhhhhHhHHHHHhcc-
Confidence 67999999999964 3455566666 456678888 99999999999 999999999985321100 00011111
Q ss_pred CCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Q 018665 170 GMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248 (352)
Q Consensus 170 ~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 248 (352)
..-++++.|.+|.+. .....+++.. +++.++.+..... ....+++........+.. ..+.+++..++..++
T Consensus 255 --~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~--g~~s~SpsL~l~~~l~~~---G~~g~~~~i~~~~~~ 326 (450)
T 3bc8_A 255 --GRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYP--GRASASPSLDVLITLLSL---GCSGYRKLLKERKEM 326 (450)
T ss_dssp --SCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSC--SCBCSHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred --cCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhh--cCCcccHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 122378899999986 4456677765 6666666544211 112233333333333332 255666776677777
Q ss_pred HHHHHHHhcccC---CceecCCC-CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHcc--CEEeccC--------C-
Q 018665 249 RDFLVKSFGELE---GVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA--QVALVPG--------D- 313 (352)
Q Consensus 249 ~~~l~~~l~~~~---g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--gi~i~~g--------~- 313 (352)
.+++.+.+++++ |..+.... .+.-..+.++..... .. .+...+.-.+.... |..+.+. .
T Consensus 327 a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~--~~----~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~ 400 (450)
T 3bc8_A 327 FVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGH--HD----KAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHT 400 (450)
T ss_dssp HHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSS--SS----CHHHHHHHHHHHTTCCSCEEECSCCEEEETTEE
T ss_pred HHHHHHHHHhhHHhcCceecCCccCCCcceeeccccccc--cc----CCCceeEEEecCCCCccceeeecccccchhHHH
Confidence 888888887776 77666432 111112222211000 00 14445555554431 3333210 0
Q ss_pred --------CCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 314 --------AFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 314 --------~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.++...++-+.++. +++|+++++++|+++.++++.
T Consensus 401 l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 401 FRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 445 (450)
T ss_dssp EETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11234566666665 889999999999998776643
|
| >2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.01 E-value=3.4 Score=30.81 Aligned_cols=123 Identities=11% Similarity=0.088 Sum_probs=75.0
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCCh--HHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcc
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGA--KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~--~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
|.+++.+-+.--|..++...++++-+. -..+..+...+.+.|=+++.+..+ ...++..|+++..+.-..+++..
T Consensus 7 ~~~A~~Ka~~aag~~lP~~gvliSv~d~dK~~l~~~a~~l~~lGf~i~AT~GT----a~~L~~~Gi~v~~v~k~~egg~~ 82 (143)
T 2yvq_A 7 GHTAFLKAMLSTGFKIPQKGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEAT----SDWLNANNVPATPVAWPSQEGQN 82 (143)
T ss_dssp CCHHHHHHHTSCSCCCCCSEEEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHH----HHHHHHTTCCCEEECCGGGC---
T ss_pred HHHHHHHHHHhcCCCCCCCCEEEEecccchHHHHHHHHHHHHCCCEEEECchH----HHHHHHcCCeEEEEEeccCCCcc
Confidence 446666555522444443348887665 555666677777777777777644 45678899999888754332110
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEec
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD 149 (352)
-+...+.+.++++..-+|++.|.. . ..+..+-..|.+.|-++ +++++..
T Consensus 83 ~~~~~i~d~i~~g~i~lVInt~~~-~--~~~~~d~~~iRR~Av~~-~IP~~T~ 131 (143)
T 2yvq_A 83 PSLSSIRKLIRDGSIDLVINLPNN-N--TKFVHDNYVIRRTAVDS-GIPLLTN 131 (143)
T ss_dssp --CBCHHHHHHTTSCCEEEECCCC-C--GGGHHHHHHHHHHHHHT-TCCEECS
T ss_pred cccccHHHHHHCCCceEEEECCCC-C--CcCCccHHHHHHHHHHh-CCCeEcC
Confidence 011245666655555556566643 1 23356688999999999 9999854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 352 | ||||
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 2e-80 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 3e-76 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 1e-67 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-66 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 1e-52 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 2e-42 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 2e-42 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 1e-40 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 8e-40 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 1e-38 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 5e-38 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 2e-33 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 9e-33 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 7e-32 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 2e-31 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-27 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 5e-27 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 1e-26 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 1e-26 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 5e-25 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 2e-24 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 2e-23 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 1e-22 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 2e-19 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 2e-14 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 1e-11 | |
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 2e-09 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 5e-09 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 4e-06 | |
| d2f8ja1 | 334 | c.67.1.1 (A:1-334) Histidinol-phosphate aminotrans | 9e-04 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 248 bits (634), Expect = 2e-80
Identities = 139/317 (43%), Positives = 196/317 (61%), Gaps = 15/317 (4%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
++NGL Y D ILV+NG KQSI +LA+ PGDEVIIPAPFWVSYPEM ++A+ TPVIL
Sbjct: 82 RDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVIL 141
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
PT + F + P+ + +T K++LL+ +PSNPTG VY + + IA++ + L VL
Sbjct: 142 PTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAG-LWVL 200
Query: 148 SDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
SDEIYE I+Y A H S + P +ER++ +GF+K +AMTGWR+G++AGP V A
Sbjct: 201 SDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAAT 260
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
KIQ TS + +Q +AA + V +M+ AF ERR +++ + + G++ +
Sbjct: 261 KIQGHSTSNVCTFAQYGAIAAYENSQ---DCVQEMLAAFAERRRYMLDALNAMPGLECPK 317
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326
P GAFY+F + +S C LLD+ QVA VPG AFG D CIR+SYA
Sbjct: 318 PDGAFYMFPSIA----------KTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA 367
Query: 327 ASLTTLQAAVERIKKGL 343
L T++ +ER++K L
Sbjct: 368 TDLDTIKRGMERLEKFL 384
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 237 bits (606), Expect = 3e-76
Identities = 126/335 (37%), Positives = 184/335 (54%), Gaps = 21/335 (6%)
Query: 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 66
G ++R + + ENGLS TP++ +V+ G Q++ A+ PGDEVI+
Sbjct: 67 PAGIPELREALAEKFRR-----ENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVL 121
Query: 67 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 126
+P+WVSYPEM R A V + T E F+ DP+ + +T +++ L++ SP+NPTG+VY
Sbjct: 122 SPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVY 181
Query: 127 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 186
PK +L+ +AR+ +H ++SDEIYEH++Y + P E TLTVNG +KAFA
Sbjct: 182 PKEVLEALARLAVEH-DFYLVSDEIYEHLLYEGEHFSPGRVAP---EHTLTVNGAAKAFA 237
Query: 187 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246
MTGWR+GY GPK + A + Q T+ +I+Q A + AL A V +A+R
Sbjct: 238 MTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYR 297
Query: 247 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 306
RRD L++ L G+K P GAFY+ +D S I E L +A
Sbjct: 298 RRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTS-----------PIAPDEVRAAERLLEAG 345
Query: 307 VALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 341
VA+VPG F +R+SYA S L+ A+ER +
Sbjct: 346 VAVVPGTDFAAFGHVRLSYATSEENLRKALERFAR 380
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 216 bits (551), Expect = 1e-67
Identities = 44/325 (13%), Positives = 96/325 (29%), Gaps = 46/325 (14%)
Query: 36 PDQILVSNGAKQSILQAVLAV--------CSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
I+ G Q I V+++ +P +V+ APF+ + E + D
Sbjct: 123 DRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGY-- 180
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147
+ + + + + ++ SP+NP G + ++
Sbjct: 181 ------VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHA---------------VIKG 219
Query: 148 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACN 206
IY+ + Y P + + + + + SK +G R G+ + +
Sbjct: 220 CKSIYDMVYYWP----HYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLL 275
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGG--------EVVSKMVKAFRERRDFLVKSFGE 258
++ T G +Q + L A ++ + K RER + +
Sbjct: 276 NYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ 335
Query: 259 LEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG- 316
+ E PQ + + + C ++ G F
Sbjct: 336 SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEA 395
Query: 317 DDTCIRISYAASLTTLQAAVERIKK 341
+R+S + + +K
Sbjct: 396 SSRYVRLSLIKTQDDFDQLMYYLKD 420
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 213 bits (542), Expect = 1e-66
Identities = 122/312 (39%), Positives = 173/312 (55%), Gaps = 15/312 (4%)
Query: 34 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 93
+I+V GA Q+ L + A G+EV+IP P +VSY +A PV +PT +
Sbjct: 84 DPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEED 143
Query: 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153
F L+ L+ +T+K+R LI+ SP NPTG+V K L+EIA V +H L+V+SDE+YE
Sbjct: 144 EFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHD-LIVISDEVYE 202
Query: 154 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 213
H IY A H S ASL GM+ERT+TVNGFSK FAMTGWRLG++A P + K Q
Sbjct: 203 HFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNA 262
Query: 214 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 273
+ + Q A AL + V +M K + RR + K E G+ +P+GAFY+
Sbjct: 263 TCPVTFIQYAAAKALK-DERSWKAVEEMRKEYDRRRKLVWKRLNE-MGLPTVKPKGAFYI 320
Query: 274 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTT 331
F S+ +L +A+VA+VPG AFG + +RISYA +
Sbjct: 321 FPRIR----------DTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEK 370
Query: 332 LQAAVERIKKGL 343
L+ A++R+++ L
Sbjct: 371 LEEAMDRMERVL 382
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 177 bits (448), Expect = 1e-52
Identities = 79/344 (22%), Positives = 154/344 (44%), Gaps = 27/344 (7%)
Query: 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 66
S+G ++R ++ +NG+ TPD + V+ +++ A+ PGDE+++P
Sbjct: 69 SEGLPELRKAIVEREKR-----KNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVP 123
Query: 67 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 126
P + Y + + PV T E++ D + K+T++++ + + +P+NPTG++Y
Sbjct: 124 GPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALY 183
Query: 127 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 186
K L+EI I ++ + + + + +NG SK +
Sbjct: 184 DKKTLEEILNIAGEYE---IPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF 240
Query: 187 MTGWRL--GYIAGPKHFVAA---CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241
TGWRL Y P++ ++ ++ ++ +Q A +A L + + +
Sbjct: 241 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLT---GPMDYLKEY 297
Query: 242 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 301
+K +ERRD++ K E+ G+ ++PQGAFY+F G +N + +
Sbjct: 298 MKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIE---------VGPWKNDKEFVLDV 348
Query: 302 LDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 343
L A V V G FG+ R + + L+ A++R +K +
Sbjct: 349 LHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFM 392
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 150 bits (380), Expect = 2e-42
Identities = 50/355 (14%), Positives = 121/355 (34%), Gaps = 28/355 (7%)
Query: 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 66
G + + F+ ++ N +++ P+ ++++ GA + + + PG+ V+IP
Sbjct: 83 YHGLPAFK---KAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIP 139
Query: 67 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL------ILCSPSN 120
P++ + + ++ S N + + +++ +L + +
Sbjct: 140 TPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPS 199
Query: 121 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP---------GM 171
+ + + ++SDEIY ++ + S + +
Sbjct: 200 NPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEV 259
Query: 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLG 231
W+R V SK + G+R+G I V A S F +S
Sbjct: 260 WQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKK 319
Query: 232 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 291
+ + + ++ S + G+ + ++D S
Sbjct: 320 LTKNYIAENHKRLKQRQKKL--VSGLQKSGISCLNGNAGLFCWVDMRHLLRSNT-----F 372
Query: 292 ENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLT-TLQAAVERIKKGL 343
E L + ++ + + + PG + + R+ +A TL A++R+K +
Sbjct: 373 EAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFV 427
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 149 bits (376), Expect = 2e-42
Identities = 100/298 (33%), Positives = 163/298 (54%), Gaps = 22/298 (7%)
Query: 46 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 105
KQ++ A +A+ PGDEVI+ +P WVSY +A T ++ T +S+NF + +E
Sbjct: 98 KQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGL 157
Query: 106 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165
L K++ +++ SP+NPTG VY + L+ + R+ K + + + TS
Sbjct: 158 LVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRN--FYIISDEVYDSLVYTDEFTSI 215
Query: 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGV 225
+ ++R + +NGFSK+ +MTGWR+GY+ + A +KIQS TS ++++Q A +
Sbjct: 216 LDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAAL 275
Query: 226 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 285
AL + S MV+ F+ER++F+V+ ++ GVK EP+GAFYLF
Sbjct: 276 KALEVDN------SYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVR------- 321
Query: 286 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 343
+ C LL++ +VALVPG AF +R+S+A S+ L A++RI+ L
Sbjct: 322 ------GDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFL 373
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 145 bits (366), Expect = 1e-40
Identities = 90/337 (26%), Positives = 151/337 (44%), Gaps = 24/337 (7%)
Query: 28 KENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
+ G P + +LV+ G ++ A A+ GDEVII PF+ Y M +A PV
Sbjct: 79 ELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVF 138
Query: 87 LPTR----------ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 136
+ + S N+ LDP L K T +++ L+L +P+NP G V+ + L+ +A
Sbjct: 139 VSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVAS 198
Query: 137 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 196
+ +H ++ ++DE+Y+ ++Y H S ASLPGMWERTLT+ K F+ TGW++G++
Sbjct: 199 LCQQHD-VVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVL 257
Query: 197 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 256
GP H + + + SQ A + S F +
Sbjct: 258 GPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHM 317
Query: 257 GELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE--NSESLCRYLLDKAQVALVP 311
G+K PQG+++L D S + + G ++ ++++ + +P
Sbjct: 318 IRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIP 377
Query: 312 GDAFGD-------DTCIRISYAASLTTLQAAVERIKK 341
F D IR + TLQA E+++K
Sbjct: 378 VSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRK 414
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 143 bits (361), Expect = 8e-40
Identities = 59/357 (16%), Positives = 134/357 (37%), Gaps = 26/357 (7%)
Query: 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 66
G + R + +F+ + + + P++++++ GA + + + PGD ++P
Sbjct: 82 YHGLPEFR---KAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVP 138
Query: 67 APFWVSYPEMARIADATPVIL-------PTRISENFLLDPKVLESKLTEKSRLLILCSPS 119
+P++ ++ R +I +I+ + + K K + LIL +PS
Sbjct: 139 SPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPS 198
Query: 120 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP------GMWE 173
NP G+ K+ L + +H LV + + P + L +
Sbjct: 199 NPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKD 258
Query: 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 233
V SK + G+R+G I V C + S F ++ +
Sbjct: 259 LVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFV 318
Query: 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 293
+ ++ + + F + E+ G+K + + ++D ++
Sbjct: 319 DNFLRESAMRLGKRHKHFT--NGLEVVGIKCLKNNAGLFCWMDLRPLLREST-----FDS 371
Query: 294 SESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAAS-LTTLQAAVERIKKGLLTLR 347
SL R +++ ++ + PG +F + R+ +A T+ A+ RI++ + +
Sbjct: 372 EMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVEK 428
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 140 bits (352), Expect = 1e-38
Identities = 43/326 (13%), Positives = 81/326 (24%), Gaps = 39/326 (11%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
+ + + + + V + +P W ++ + A +
Sbjct: 105 SLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTE 164
Query: 95 FLLDPKV----LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150
E S ++ NPTG+ +IA + K L D
Sbjct: 165 KRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASV-MKRRFLFPFFDS 223
Query: 151 IYEHIIYAPATHTSFA--SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 208
Y+ ++A FSK F + R+G + + ++
Sbjct: 224 AYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRV 283
Query: 209 QSQFTSGASSI-------SQKAGVAALGLGYAGGEV---VSKMVKAFRERRDFLVKSFGE 258
SQ + L E V M R L
Sbjct: 284 LSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA 343
Query: 259 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 318
L + G + D F + YL+++ + L+P
Sbjct: 344 L------KTPGTWNHITDQIGM-------FSFTGLNPKQVEYLINQKHIYLLPS------ 384
Query: 319 TCIRISYAA-SLTTLQAAVERIKKGL 343
RI+ + L I + +
Sbjct: 385 --GRINMCGLTTKNLDYVATSIHEAV 408
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 138 bits (347), Expect = 5e-38
Identities = 51/334 (15%), Positives = 96/334 (28%), Gaps = 41/334 (12%)
Query: 27 LKENGLSYTPDQILVSNGAKQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMARIADA 82
+ ++ S V A P V + P W ++ + A
Sbjct: 84 FGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF 143
Query: 83 TPVILPTRISENFLLDPKVLES---KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA 139
P + L + L +S +L+ NPTG+ + D + I
Sbjct: 144 EVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEI-L 202
Query: 140 KHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 198
K L+ D Y+ + ++ L N FSK F++ G R+G ++
Sbjct: 203 KARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVM 262
Query: 199 KHFVAACNKIQSQF-------TSGASSISQKAGVAALGLGYAGGEVVS---KMVKAFRER 248
A ++ Q S + + A L ++ +M
Sbjct: 263 CEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAM 322
Query: 249 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308
R LV + + P+ F ++ F S + L ++ V
Sbjct: 323 RQELV------KVLSTEMPERNFDYLLNQRGM-------FSYTGLSAAQVDRLREEFGVY 369
Query: 309 LVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKK 341
L+ R+ A + +Q +
Sbjct: 370 LIAS--------GRMCVAGLNTANVQRVAKAFAA 395
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 125 bits (314), Expect = 2e-33
Identities = 51/339 (15%), Positives = 91/339 (26%), Gaps = 49/339 (14%)
Query: 27 LKENGLSYTPDQILVSNGAKQSILQAVLAVC-----SPGDEVIIPAPFWVSYPEMARIAD 81
L EN ++ + + G + V A +V +P P W ++ + R A
Sbjct: 85 LGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAG 144
Query: 82 ATPVILPTRISENFLLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 138
+ LD + EKS +L+ NPTG + E+A +
Sbjct: 145 LQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASV- 203
Query: 139 AKHPRLLVLSDEIYEHIIYAPATHTSFA--SLPGMWERTLTVNGFSKAFAMTGWRLGYIA 196
K LL D Y+ ++A + ++K + G R G
Sbjct: 204 VKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFT 263
Query: 197 GPKHFVAACNKIQSQFTSGASSI-------SQKAGVAALGLGYAGGEV---VSKMVKAFR 246
+++SQ + + L E V M
Sbjct: 264 VICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRII 323
Query: 247 ERRDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303
R LV + + + Q + F L
Sbjct: 324 SMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL----------------KPEQVERLTK 367
Query: 304 KAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKK 341
+ + + RIS A + + + I +
Sbjct: 368 EFSIYMTKD--------GRISVAGVASSNVGYLAHAIHQ 398
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 124 bits (310), Expect = 9e-33
Identities = 78/334 (23%), Positives = 147/334 (44%), Gaps = 21/334 (6%)
Query: 28 KENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
+ + P ++LV+ GA +++ + GDEVII PF+ Y M + A P
Sbjct: 81 QLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRF 140
Query: 87 LPTRISEN--------FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 138
+P + ++ ++LD LE+ EK++++I+ +P NP G V + L+ +A +
Sbjct: 141 IPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLC 200
Query: 139 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 198
K +L +SDE+YEH+++ P H +LPGMWERT+T+ K F++TGW++G+ GP
Sbjct: 201 KKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGP 259
Query: 199 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD---FLVKS 255
+ + + ++ Q+A + + + S
Sbjct: 260 EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMAS 319
Query: 256 FGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGKIENSESLCRYLLDKAQVALVPGDA 314
F G+ + PQG +++ D+S+ + +++ + +P A
Sbjct: 320 FLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSA 379
Query: 315 FGDDT-------CIRISYAASLTTLQAAVERIKK 341
F + +R + LQ A E ++K
Sbjct: 380 FYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRK 413
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 121 bits (303), Expect = 7e-32
Identities = 41/337 (12%), Positives = 83/337 (24%), Gaps = 47/337 (13%)
Query: 27 LKENGLSYTPDQ----ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82
+ + + LA + V + P W ++ + A
Sbjct: 83 FGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGL 142
Query: 83 TPVILPTRISENFLL---DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA 139
+EN L ++ +L NPTG +A++ +
Sbjct: 143 EVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQL-S 201
Query: 140 KHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 198
L L D Y+ + M + + + +SK F + R+G
Sbjct: 202 VEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLV 261
Query: 199 KHFVAACNKIQSQFTS-------GASSISQKAGVAALGLGYAGGEV---VSKMVKAFRER 248
++ SQ + + L ++ M + +
Sbjct: 262 AADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRM 321
Query: 249 RDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 305
R V + E Q + F ++ L ++
Sbjct: 322 RQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL----------------TKEQVLRLREEF 365
Query: 306 QVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKK 341
V V R++ A + + E I
Sbjct: 366 GVYAVAS--------GRVNVAGMTPDNMAPLCEAIVA 394
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 120 bits (301), Expect = 2e-31
Identities = 46/345 (13%), Positives = 83/345 (24%), Gaps = 55/345 (15%)
Query: 27 LKENGLSYTPDQILVSNGAKQS----ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82
+ D+++ + I + P V + P W ++ +
Sbjct: 87 FGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGL 146
Query: 83 TPVILPTRISENFLLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA 139
P +E LD + + E S ++ NPTG +I
Sbjct: 147 KTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDA-I 205
Query: 140 KHPRLLVLSDEIYEHIIY-----APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 194
+ L D Y+ F+K M G R+G
Sbjct: 206 ASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGC 265
Query: 195 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLG--------------YAGGEVVSK 240
A I+ TS + I + G + +
Sbjct: 266 FHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVT 325
Query: 241 MVKAFRERRDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL 297
M + R L +L Q + F + +
Sbjct: 326 MSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL----------------TPQM 369
Query: 298 CRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKK 341
+ L + V LV R S A + ++ + I +
Sbjct: 370 VKRLEETHAVYLVAS--------GRASIAGLNQGNVEYVAKAIDE 406
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 108 bits (270), Expect = 3e-27
Identities = 41/326 (12%), Positives = 79/326 (24%), Gaps = 43/326 (13%)
Query: 34 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 93
T V + + +P V + P W ++ + +E
Sbjct: 91 TTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAE 150
Query: 94 NFLL---DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 150
+ K + + +L+ NPTG+ + EIA I + L L D
Sbjct: 151 TRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASI-LEKTGALPLIDL 209
Query: 151 IYEHIIYAPATHTSFASLPGMWE-RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 209
Y+ + L L SK F + R G + A Q
Sbjct: 210 AYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQ 269
Query: 210 SQFTSGASSI--SQKAGVAALGLGYAGGE--------VVSKMVKAFRERRDFLVKSFGEL 259
A + + + R+ L +L
Sbjct: 270 GAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDL 329
Query: 260 EG---VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316
G + + + + + ++ + +V
Sbjct: 330 SGSDRFGFVAEHRGMFSRLGA----------------TPEQVKRIKEEFGIYMVGD---- 369
Query: 317 DDTCIRISYAA-SLTTLQAAVERIKK 341
RI+ A + T+ I +
Sbjct: 370 ----SRINIAGLNDNTIPILARAIIE 391
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (267), Expect = 5e-27
Identities = 41/311 (13%), Positives = 85/311 (27%), Gaps = 25/311 (8%)
Query: 37 DQILVSNGAKQSILQAVLAVCSPGDEVII--PAPFWVSYPEMARIADATPVILPTRISEN 94
D+ + N +IL +LA+ P + P S +I +A
Sbjct: 69 DKCVGFNRTSSAILATILALK-PKKVIHYLPELPGHPSIERSCKIVNAKYF--------- 118
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
+ +K+ + + ++I S + ++ AK+ +V D+
Sbjct: 119 ESDKVGEILNKIDKDTLVIITGSTMDLKVIELEN--FKKVINT-AKNKEAIVFVDDASGA 175
Query: 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 214
+ P + + S M G R G +AG K V ++F
Sbjct: 176 RVRLLFNQ------PPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGL 229
Query: 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 274
A L E + K + + ++ + +
Sbjct: 230 EAQPPLLAGIYR--ALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERT 287
Query: 275 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GDDTCIRISYAASLTTLQ 333
+ I+ + LL + + G +RI + +
Sbjct: 288 PTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSR-DAER 346
Query: 334 AAVERIKKGLL 344
I K ++
Sbjct: 347 IDDNYIIKAIV 357
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 106 bits (265), Expect = 1e-26
Identities = 85/313 (27%), Positives = 146/313 (46%), Gaps = 27/313 (8%)
Query: 34 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT-RIS 92
P+ ++V++GA +++ + ++ PGDEV++ PF+ Y A +A A ++
Sbjct: 76 VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTP 135
Query: 93 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152
E F LD LE LT ++R L+L +P NPTG V+ + L+ IAR+ H L ++SDE+Y
Sbjct: 136 EGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISDEVY 194
Query: 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 212
+ + Y ERT TV K TG+R+G+I GPK F+ ++
Sbjct: 195 DELYYGERPRRLR---EFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWT 251
Query: 213 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 272
+ A + Q AL L + + +R RRD L + G+++ P+G ++
Sbjct: 252 SFSAPTPLQAGVAEALKLAR-REGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYF 309
Query: 273 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT----CIRISYAAS 328
L + L+++A+VAL+P AF + R ++ +
Sbjct: 310 LMAEL----------------PGWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKT 353
Query: 329 LTTLQAAVERIKK 341
L A+ER+ +
Sbjct: 354 EEELHLALERLGR 366
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 107 bits (266), Expect = 1e-26
Identities = 71/342 (20%), Positives = 137/342 (40%), Gaps = 14/342 (4%)
Query: 7 SQGTLQMR-VLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 65
+ G+ + R + ++ + ++ +E + D +++ +G IL A+ A+C GD ++
Sbjct: 71 TVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALV 130
Query: 66 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 125
P P + Y + + R ++ D + +K++LLI+ +PSNP GS
Sbjct: 131 PQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSN 190
Query: 126 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM---WERTLTVNGFS 182
+ + E +A+ RL + SDEIY +++ + + + + G +
Sbjct: 191 FSRKH-VEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTA 249
Query: 183 KAFAMTGWRLGYIAGPKHFVAA---CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239
K + GWRLG++ ++ + L E +
Sbjct: 250 KNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLD 309
Query: 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCR 299
++V E +L GE G+ + P+GA YL E + I+
Sbjct: 310 QIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID------LEKYRDIKTDVEFFE 363
Query: 300 YLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 341
LL++ V ++PG F R++ + + AVERIK
Sbjct: 364 KLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKA 405
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 102 bits (253), Expect = 5e-25
Identities = 81/319 (25%), Positives = 145/319 (45%), Gaps = 20/319 (6%)
Query: 28 KENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
+ G D I V+ GA +++ A+ A+ GDEVI P + SY ++ V
Sbjct: 78 RLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSG-GIVK 136
Query: 87 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
+F +D + + L+E++RL+IL +P + + + + V
Sbjct: 137 RMALQPPHFRVDWQEFAALLSERTRLVILNTP-HNPSATVWQQADFAALWQAIAGHEIFV 195
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+SDE+YEHI ++ H S + P + ER + V+ F K + MTGW++GY P
Sbjct: 196 ISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPI---SA 252
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
+I+ S++ A +A + A E + +R++RD LV + E +++
Sbjct: 253 EIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE-SRLEILP 311
Query: 267 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD----TCIR 322
+G ++L +D+S + C++L + VA +P F D IR
Sbjct: 312 CEGTYFLLVDYSAV---------STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIR 362
Query: 323 ISYAASLTTLQAAVERIKK 341
+ +A +TL AA ER+++
Sbjct: 363 LCFAKKESTLLAAAERLRQ 381
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 100 bits (250), Expect = 2e-24
Identities = 53/327 (16%), Positives = 132/327 (40%), Gaps = 27/327 (8%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
K + + +I+ G++Q++ +PGD +++ AP +++ + + D + +
Sbjct: 86 KRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISI 145
Query: 88 PTRISENFLLDPKVLESKLTEKSRLLIL----CSPSNPTGSVYPKNLLDEIARIVAKHPR 143
P + + +L ++ + + + + NP G + ++ + ++
Sbjct: 146 PLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYD- 204
Query: 144 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 203
L++ D Y + Y+ + R + + FSK G+R+G++A H +
Sbjct: 205 FLIVEDGPYSELRYSGEPTPPIKH-FDDYGRVIYLGTFSKIL-APGFRIGWVAAHPHLIR 262
Query: 204 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE--LEG 261
+ ++ Q + GY E + K+++ ++ RRD ++++ E EG
Sbjct: 263 KMEIAKQSIDLCTNTFGQAIAWKYVENGY-LDEHIPKIIEFYKPRRDAMLEALEEYMPEG 321
Query: 262 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT-- 319
V+ ++P+G ++ + ++ VA VPG+AF
Sbjct: 322 VEWTKPEGGMFVRVTLPEGIDTKL------------MMERAVAKGVAYVPGEAFFVHRDK 369
Query: 320 --CIRISYA-ASLTTLQAAVERIKKGL 343
+R+++ T++ V R+ + +
Sbjct: 370 KNTMRLNFTYVPEETIREGVRRLAETI 396
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 97.6 bits (241), Expect = 2e-23
Identities = 42/324 (12%), Positives = 111/324 (34%), Gaps = 16/324 (4%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
++ + ++ + + + G+ V+I P + ++ + T + +
Sbjct: 50 TQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPV 109
Query: 88 P-TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 146
+ ++ + D LE+ L + ++L EI + + + V
Sbjct: 110 ALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRV 169
Query: 147 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 206
+SDEI+ +++ H ++ + SK+F + Y
Sbjct: 170 ISDEIHMDMVWGEQPHIPWS--NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAY 227
Query: 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 266
+ G SS S A A + G + + ++ ++ +
Sbjct: 228 LSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQ 287
Query: 267 P-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRI 323
Q + ++D + +L + L+++ +VA++PG +G++ +R+
Sbjct: 288 IPQSTYLAWLDLR----------PLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRL 337
Query: 324 SYAASLTTLQAAVERIKKGLLTLR 347
+ + L+ V + + +R
Sbjct: 338 NAGCPRSKLEKGVAGLINAIRAVR 361
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 95.6 bits (236), Expect = 1e-22
Identities = 64/324 (19%), Positives = 121/324 (37%), Gaps = 14/324 (4%)
Query: 28 KENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 87
+ D I+ + G ++ AV PGD VII P + + + + +
Sbjct: 81 DRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIEC 140
Query: 88 PTRISENFLLDPKVLESKL--TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 145
+ + KL + ++ L+ CSP NP G V+ K+ L +I IV K +L
Sbjct: 141 ELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLML 200
Query: 146 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 205
+ ++ I+ + + ++T+T SK F + G + I +
Sbjct: 201 WSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRER 260
Query: 206 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 265
TSG + + G + + + +R +K
Sbjct: 261 FTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320
Query: 266 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT--CIRI 323
+G + +IDF + +++ +++ KAQ+ G FGD RI
Sbjct: 321 LIEGTYLQWIDFR----------ALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERI 370
Query: 324 SYAASLTTLQAAVERIKKGLLTLR 347
+ AA + +Q ++ER+ K L L+
Sbjct: 371 NLAAPSSVIQESLERLNKALKDLK 394
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 86.4 bits (212), Expect = 2e-19
Identities = 74/325 (22%), Positives = 145/325 (44%), Gaps = 30/325 (9%)
Query: 29 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 88
+ P+ +LV+NG ++IL + + +PGDE+++ PF+ +Y A+IA + +
Sbjct: 80 RQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVT 139
Query: 89 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 148
R+ E F P+ LES + E+++ ++L +P NPTG VY K+ + + I +H L ++
Sbjct: 140 RRMEEGFA-IPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHG-LFLIV 197
Query: 149 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 208
DE+Y I++ ++ ++ + ++ SK F+ G R+G + + +
Sbjct: 198 DEVYSEIVFRGEFASAL---SIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMK 254
Query: 209 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 268
+Q + Q V + + +RER + ++K E + ++P
Sbjct: 255 LAQGRLAPPLLEQIGSVGL---LNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPS 311
Query: 269 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL-----DKAQVALVPGDAFG-----DD 318
GAFY+ + +E++E R++L D + P F
Sbjct: 312 GAFYITAEL------------PVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGK 359
Query: 319 TCIRISYAASLTTLQAAVERIKKGL 343
IRI+ L A++ + +GL
Sbjct: 360 KEIRIACVLEKDLLSRAIDVLMEGL 384
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 71.7 bits (174), Expect = 2e-14
Identities = 45/335 (13%), Positives = 110/335 (32%), Gaps = 30/335 (8%)
Query: 28 KENGLSY-TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 86
+ G++ D ++ + G++Q++ ++ P ++ R A V+
Sbjct: 95 RMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVV 154
Query: 87 LPTRISENFLLDPKV------LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 140
+P L + K+ + + ++ + NP G + I K
Sbjct: 155 VPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEK 214
Query: 141 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 200
+ +V D F L G R+G +AG K
Sbjct: 215 YDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSK---VLAPGLRIGMVAGSKE 271
Query: 201 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM---VKAFRERRDFLVKSFG 257
F+ + + + +I+ + L ++ + + + L + F
Sbjct: 272 FIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFS 331
Query: 258 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG- 316
++ GVK + +G ++++ + ++ + Y + +V VPG F
Sbjct: 332 DIPGVKWVKSEGGLFIWLTLPEGF-----------DTWEMFEYAK-RKKVFYVPGRVFKV 379
Query: 317 ---DDTCIRISYA-ASLTTLQAAVERIKKGLLTLR 347
+R+S+ + ++R+++ +L
Sbjct: 380 YDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYG 414
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 62.9 bits (151), Expect = 1e-11
Identities = 45/306 (14%), Positives = 93/306 (30%), Gaps = 27/306 (8%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
P+Q+LVS GA + I + A C PG + I+ P ++ +
Sbjct: 72 KPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNW 131
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
L + ++ N + + ++V + E
Sbjct: 132 QLDLQGI---SDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEF 188
Query: 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 214
A A + + SKAFA+ G R G+ + + K+ + +
Sbjct: 189 CPQAS-----LAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPL 243
Query: 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 274
A + G + + V R++L+ + E+ V+ Y+
Sbjct: 244 STPVADIAAQALSPQ----GIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYIL 299
Query: 275 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQA 334
F + S ++ + L D+ + C+RI+ Q
Sbjct: 300 ARF--------------KASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVGTR-EESQR 344
Query: 335 AVERIK 340
++ ++
Sbjct: 345 VIDALR 350
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 55.6 bits (132), Expect = 2e-09
Identities = 54/309 (17%), Positives = 94/309 (30%), Gaps = 31/309 (10%)
Query: 35 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94
IL NG +SI + ++ P + +
Sbjct: 73 PASWILAGNGETESIFTVASGLKPRRAMIVTPGFAEYGRALAQSGCEIRRWS---LREAD 129
Query: 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154
+ LT L LC+P+NPTG + + LL IA L+L + +
Sbjct: 130 GWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDF 189
Query: 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 214
I + + P +W + +K +A+ G RLGY+ A + Q S
Sbjct: 190 IPHETGFIPALKDNPHIW----VLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWS 245
Query: 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 274
+ + V RE ++ +L + + P A YL
Sbjct: 246 VNALAALAGEV-----ALQDSAWQQATWHWLREEGARFYQALCQLPLLTV-YPGRANYLL 299
Query: 275 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYA--ASLT 330
+ L R LL + ++ + + D R++ A
Sbjct: 300 LRCE-------------REDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVAIRSAAQNE 345
Query: 331 TLQAAVERI 339
L AA+ +
Sbjct: 346 RLLAALRNV 354
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.0 bits (131), Expect = 5e-09
Identities = 48/348 (13%), Positives = 98/348 (28%), Gaps = 38/348 (10%)
Query: 27 LKENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYPEMARIADAT 83
+K G+ +V S+ L + +I P S + A
Sbjct: 104 IKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFE 163
Query: 84 PVILPTRI-SENFLLDPKVLESKL----TEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 138
PV++ + + D K +E+K+ E L + L+E+A I
Sbjct: 164 PVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVIC 220
Query: 139 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL-----TVNGFSKAFAMTGWRLG 193
A + +I + A +S + V K F +
Sbjct: 221 ANY--------DIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAI 272
Query: 194 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL--GYAGGEVVSKMVKAFRERRDF 251
+ F+ +K+ S + S+ + +LG + +M +
Sbjct: 273 IAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKK 332
Query: 252 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL-CRYLLDKAQVALV 310
L ++ E P ++ G + + + + V V
Sbjct: 333 LAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTV 392
Query: 311 PGDAFGD---------DTCIRISYAASLTT--LQAAVERIKKGLLTLR 347
G F + + A + + ++R+ K L +R
Sbjct: 393 SGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVR 440
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 46.1 bits (108), Expect = 4e-06
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 36 PDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPEMARIADATPV-ILPTR 90
P +I+ ++GA +S A+ G +I + + R + +
Sbjct: 65 PREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLA 124
Query: 91 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 138
N ++D K LE+ + + + L+ + +N G V + E+ R
Sbjct: 125 PQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRAR 172
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Score = 38.2 bits (87), Expect = 9e-04
Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 37/230 (16%)
Query: 112 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171
++ + +P+NPTG V+ + ++ I + + L + YE +
Sbjct: 141 VVFIPNPNNPTGHVFEREEIERILK----TGAFVALDEAYYEFHGESYVDF------LKK 190
Query: 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLG 231
+E + FSKAF++ R+GY+ + F+ A N+++ F S
Sbjct: 191 YENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLPFNVSYVSQMFAKVA------ 244
Query: 232 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 291
E+ + K E R+ + + E+ G ++++ +G F F +
Sbjct: 245 LDHREIFEERTKFIVEERERMKSALREM-GYRITDSRGNFVFV-------------FMEK 290
Query: 292 ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 341
E E L +L K VA+ +RI+ + ++
Sbjct: 291 EEKERLLEHLRTK-NVAVRSF-----REGVRITIGKREEN-DMILRELEV 333
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.97 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.96 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.96 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.96 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.96 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.95 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.94 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.94 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.94 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.93 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.93 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.92 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.91 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.91 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.9 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.9 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.89 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.89 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.89 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.88 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.88 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.88 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.88 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.88 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.87 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.87 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.87 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.87 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.87 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.87 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.86 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.86 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.85 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.84 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.84 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.84 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.84 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.83 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.83 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.83 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.83 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.83 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.82 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.82 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.81 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.81 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.81 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.8 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.78 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.77 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.76 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.76 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.76 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.76 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.67 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.62 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.57 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.52 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.5 | |
| d1ofux_ | 119 | Hypothetical protein PA3008 {Pseudomonas aeruginos | 88.6 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 84.13 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=6.9e-53 Score=382.00 Aligned_cols=325 Identities=43% Similarity=0.777 Sum_probs=298.0
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
+.|+++.|.+++| +++++++. ++|+.+++++|++|+|+++++..++.+++++||.|++++|+|..|...++..
T Consensus 61 ~~Y~~~~G~~~lR------~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~ 134 (388)
T d1j32a_ 61 TRYGPAAGEPRLR------EAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLA 134 (388)
T ss_dssp CSCCCTTCCHHHH------HHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT
T ss_pred CCCCCCCCCHHHH------HHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHh
Confidence 4699999999999 99999999 8899999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++...++++.+|++++++.++++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|+.+.+++.
T Consensus 135 ~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~-~~~iI~De~Y~~~~~~~~ 213 (388)
T d1j32a_ 135 EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEA-GLWVLSDEIYEKILYDDA 213 (388)
T ss_dssp TCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTC
T ss_pred cCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhhcccccC-CeEEEchhhhhcccccCC
Confidence 9999999998878889999999999999999999999999999999999999999999999 999999999999988877
Q ss_pred CccccccCCC-CCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 161 THTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 161 ~~~~~~~~~~-~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
.+.++..... .+++++++.|+||.++++|+|+||+++++++++.+.+........++...|.++...+.. ..++++
T Consensus 214 ~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~---~~~~~~ 290 (388)
T d1j32a_ 214 QHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN---SQDCVQ 290 (388)
T ss_dssp CCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS---CSHHHH
T ss_pred CCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccc---hHHHHH
Confidence 6666655432 236889999999999999999999999999999988887777778999999988888876 368899
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 319 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~ 319 (352)
+.++.++++++.+.+.|++++|+.+..|++|+|+|+++++.. .+..+++++|++++||.+.||..|+.++
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~~~~----------~~~~~~~~~ll~~~gV~v~pG~~F~~~~ 360 (388)
T d1j32a_ 291 EMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTG----------RSSLDFCSELLDQHQVATVPGAAFGADD 360 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGT----------CCHHHHHHHHHHHHCEECEEGGGGTCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEecCCCceEEEEEECCCCC----------CCHHHHHHHHHHhCCEEEEeccccCCCC
Confidence 999999999999999999988999999999999999988642 2678899999888899999999999999
Q ss_pred eEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 320 CIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 320 ~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
++||+++.+++++++++++|+++++.+
T Consensus 361 ~~Rls~~~~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 361 CIRLSYATDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp BEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 999999989999999999999999865
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.7e-51 Score=373.55 Aligned_cols=327 Identities=39% Similarity=0.635 Sum_probs=294.2
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCC-CCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLS-YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~-~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
+.|+++.|..++| +++|+++. +++.. ..+++|++|+|+++++..++.+++++||+|++++|+|..+...++.
T Consensus 56 ~~Y~~~~G~~~lr------~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~ 129 (388)
T d1gdea_ 56 THYGPNIGLLELR------EAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVIL 129 (388)
T ss_dssp CSCCCTTCCHHHH------HHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHH
T ss_pred cCCCCCcCCHHHH------HHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHH
Confidence 4699999999999 99999998 56553 4567899999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|.+++.+++..+++|.+|+++|++.++++++++++++||||||.+++.+++++|+++|+++ +++||+||+|+++.+.+
T Consensus 130 ~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~-~~~vi~De~y~~~~~~~ 208 (388)
T d1gdea_ 130 AGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYDD 208 (388)
T ss_dssp HTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTT
T ss_pred cCCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEcCChhhhhcc
Confidence 99999999998878889999999999999999999999999999999999999999999999 99999999999998888
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....++..+....+++++++|+||.+|++|+|+||+++++++++.+.........+++.+.+.++..++..... .+.+.
T Consensus 209 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 287 (388)
T d1gdea_ 209 ARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVE 287 (388)
T ss_dssp CCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-HHHHH
T ss_pred CCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccc-hhHHH
Confidence 77777777776678999999999999999999999999999999998888888888999999999999876322 34566
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
..++.+++++..+.+.|... ++.+..|++|+|+|+++++.. .++.++++.|++++||.+.||..|+.
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~fl~~~l~~~~----------~~~~~~~~~ll~e~gV~v~PG~~F~~~~ 356 (388)
T d1gdea_ 288 EMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTG----------LTSKKFSELMLKEARVAVVPGSAFGKAG 356 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGGT----------CCHHHHHHHHHHHTCEECEEGGGGCGGG
T ss_pred HHHHHHHHhhhhhhhhhhhc-cccccCCCceEEEEEECCCCC----------CCHHHHHHHHHHhCCEEEEechhhCCCC
Confidence 77788888899999999887 788888999999999997531 27889999988888999999998864
Q ss_pred CCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 318 DTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 318 ~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
++++||+++.++|++++++++|++++++++
T Consensus 357 ~~~iRis~~~~~e~l~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 357 EGYVRISYATAYEKLEEAMDRMERVLKERK 386 (388)
T ss_dssp TTBEEEECCSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence 689999999888999999999999999876
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.6e-51 Score=370.30 Aligned_cols=320 Identities=39% Similarity=0.651 Sum_probs=285.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|+++.|.+++| +.+++++. ++++.+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..
T Consensus 62 ~~Y~~~~G~~~lR------~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~ 135 (382)
T d1b5pa_ 62 TKYAPPAGIPELR------EALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFA 135 (382)
T ss_dssp CSCCCTTCCHHHH------HHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT
T ss_pred cCCCCCCCCHHHH------HHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHh
Confidence 4699999999999 99999999 8899999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.+++.+++++.+|++++++.++++++++++++||||||.+++.+++++|+++|+++ |++||+||+|+++.+++.
T Consensus 136 g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~ 214 (382)
T d1b5pa_ 136 GGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEH-DFYLVSDEIYEHLLYEGE 214 (382)
T ss_dssp TCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSC
T ss_pred cCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHc-CeEEEEEccccceecCCC
Confidence 9999999988777889999999999999999999999999999999999999999999999 999999999999988776
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
...+... ..++++++.|+||.++++|+|+||+++++++++.+.........+++.+.+.++..++........+...
T Consensus 215 ~~~~~~~---~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (382)
T d1b5pa_ 215 HFSPGRV---APEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEM 291 (382)
T ss_dssp CCCGGGT---CTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCCHHHc---CCCCEEEEecchhhccCcHhheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHH
Confidence 5444332 2478999999999999999999999999999999988877777788888888888777653222556677
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCe
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 320 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~ 320 (352)
.++.++++++.+.+.+++. |+.+..|++|+|+|+++++... +...+.+.|.++ ||.+.||..|+.+++
T Consensus 292 ~~~~~~~~~~~~~~~l~~~-g~~~~~p~gg~~~~~~~~~~~~----------~~~~~~~~l~e~-gV~v~PG~~F~~~~~ 359 (382)
T d1b5pa_ 292 AREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAP----------DEVRAAERLLEA-GVAVVPGTDFAAFGH 359 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTTCS----------SHHHHHHHHHHT-TEECEESGGGTCTTE
T ss_pred HHHHHHhhhhHHHHHHhhc-CCeEecCCceEEEeEeCCCCCC----------CHHHHHHHHHHC-CEEEEeCcccCCCCe
Confidence 7888888999999999887 8999999999999999865421 677788887765 999999999999999
Q ss_pred EEEEeecCHHHHHHHHHHHHHHH
Q 018665 321 IRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
+||+++.++|++++++++|++++
T Consensus 360 iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 360 VRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp EEEECCSCHHHHHHHHHHGGGGC
T ss_pred EEEEEcCCHHHHHHHHHHHHHhC
Confidence 99999989999999999998764
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.9e-49 Score=356.42 Aligned_cols=323 Identities=28% Similarity=0.496 Sum_probs=281.3
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
+.|+++.|.+++| +++++++. ++|+.+++++|++++|+++++..++.++.++||+|++++|+|..+...++..
T Consensus 64 ~~Y~~~~G~~~LR------~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~ 137 (395)
T d1xi9a_ 64 NYYGDSEGLPELR------KAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFY 137 (395)
T ss_dssp CSCCCTTCCHHHH------HHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT
T ss_pred CCCCCCCCCHHHH------HHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhc
Confidence 4699999999999 99999999 8999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++...++++.+|++++++.+.++++++++++||||||.+++.+++++|+++|+++ ++++|.||+|.++.+++.
T Consensus 138 g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~ 216 (395)
T d1xi9a_ 138 GGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY-EIPVISDEIYDLMTYEGE 216 (395)
T ss_dssp TCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBSSSC
T ss_pred CCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhc-CeeEEecccccccccccc
Confidence 9999999988778899999999999999999999999999999999999999999999999 999999999999888654
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEc--ChhHHHHHH---hhhhccccCCChHHHHHHHHHhcccCCCh
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--PKHFVAACN---KIQSQFTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
. .+...... .++++++.|+||.++++|+|+||+++ +...+..+. .........++.+.|.++..++.. ..
T Consensus 217 ~-~~~~~~~~-~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~---~~ 291 (395)
T d1xi9a_ 217 H-ISPGSLTK-DVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG---PM 291 (395)
T ss_dssp C-CCHHHHCS-SSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS---CC
T ss_pred c-cchhhcCC-CCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC---CH
Confidence 3 33333333 57899999999999999999999874 233333322 222334566888899988888876 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
+++++.++.++++++.+.+.|++++++.+..|++|+|+|++++.... .+..+++++|++++||.+.||..|
T Consensus 292 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~~---------~~~~~~~~~ll~~~gV~v~PG~~F 362 (395)
T d1xi9a_ 292 DYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPW---------KNDKEFVLDVLHNAHVLFVHGSGF 362 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSC---------SSHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCCCC---------CCHHHHHHHHHHhCCEEEEcChhh
Confidence 88999999999999999999999877888899999999999875321 167788888888889999999999
Q ss_pred CC--CCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 316 GD--DTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 316 ~~--~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
+. ++++||+++.+.|++++++++|++++++
T Consensus 363 g~~~~~~~Ris~~~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 363 GEYGAGHFRAVFLPPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp CGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 75 6799999988889999999999999875
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=8.1e-48 Score=352.15 Aligned_cols=334 Identities=24% Similarity=0.464 Sum_probs=292.5
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|+++.|.+++| +++|+++. ++|..+.+ ++|++|+|+++++..++.+++++||.|++++|+|..+...+...
T Consensus 61 ~Y~~~~G~~~lR------eaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~ 134 (418)
T d2r5ea1 61 QYTRGFGHPRLV------QALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAA 134 (418)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT
T ss_pred CCCCCCCCHHHH------HHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHHHc
Confidence 599999999999 99999999 88998885 89999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCC--------CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 81 DATPVILPTRISE--------NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 81 g~~v~~i~~~~~~--------~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
|.+++.++++.+. .+..+.+++.+....+++++++++||||||.+++.+++++|+++|+++ |+++|+||+|
T Consensus 135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~-~~~iI~De~y 213 (418)
T d2r5ea1 135 GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVY 213 (418)
T ss_dssp TCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTT
T ss_pred CCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcC-Ceeeecccch
Confidence 9999999987543 255788999988888999999999999999999999999999999999 9999999999
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhccc-
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLG- 231 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 231 (352)
..+.+++....++..+....++++++.|+||.++++|+|+||+++++++++.+.+.......+.+++.|.++...+...
T Consensus 214 ~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~ 293 (418)
T d2r5ea1 214 EHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETEL 293 (418)
T ss_dssp TTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHH
T ss_pred hhhccCCCccccccccccccceeeeeecCCccccCCCcccccccccchhhhhhhhcccccccccccchhhhccccccccc
Confidence 9999888777787777777789999999999999999999999999999999988877777788999998887776542
Q ss_pred ---CCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcc-cCCCCCCChHHHHHHHHHccCE
Q 018665 232 ---YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA-EGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 232 ---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi 307 (352)
...++++.++++.++.+++.+.+.|+++ |+.+..|++|+|+|++++....... .......+..+++++|++++||
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV 372 (418)
T d2r5ea1 294 KRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGL 372 (418)
T ss_dssp TTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSE
T ss_pred cccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCE
Confidence 1125778899999999999999999998 9999999999999999876432111 1111122677899999988899
Q ss_pred EeccCCCCCC-------CCeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 308 ALVPGDAFGD-------DTCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 308 ~i~~g~~~~~-------~~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
.+.||+.|+. .+++|||++.++|++++++++|++.+.
T Consensus 373 ~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 373 QGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKG 416 (418)
T ss_dssp ECBCGGGGSCGGGHHHHTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred EEeCchhhCCCCCccCCCCEEEEEecCCHHHHHHHHHHHHHHHc
Confidence 9999998864 368999998899999999999999874
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=5.8e-48 Score=352.67 Aligned_cols=330 Identities=22% Similarity=0.365 Sum_probs=279.3
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hc------CCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-EN------GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP 74 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~------~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~ 74 (352)
+.|++..|.++|| +++|+++. ++ +..+++++|++|+|+++++..++.+++++||+|++++|+|..+.
T Consensus 66 ~~Y~~~~G~~~LR------eaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~ 139 (412)
T d1bw0a_ 66 NGYFPTVGSPEAR------EAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYE 139 (412)
T ss_dssp SSCCCTTCCHHHH------HHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHH
T ss_pred CCCCCCcCCHHHH------HHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhh
Confidence 3599999999999 99999998 54 44578899999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 75 EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 75 ~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
..++..|.+++.+++++++++..+++++++...++++++++++||||||.+++.+++++|+++|+++ |++||+||+|++
T Consensus 140 ~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~-~~~vi~De~Y~~ 218 (412)
T d1bw0a_ 140 TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEEL-RLPLFSDEIYAG 218 (412)
T ss_dssp HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTT
T ss_pred hhhhccCccccccccccccccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccC-CeeeechhhHHH
Confidence 9999999999999999888889999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCCCCccccccCC---CCCCceEEEeccccccccccceeEEEEcCh------hHHHHHHhhhhccccCCChHHHHHHH
Q 018665 155 IIYAPATHTSFASLP---GMWERTLTVNGFSKAFAMTGWRLGYIAGPK------HFVAACNKIQSQFTSGASSISQKAGV 225 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~---~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (352)
+.+++..+.+..... ....+++++.|+||.++++|+|+||+++++ ..+......... ..+++...+..+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 297 (412)
T d1bw0a_ 219 MVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGML-VCGPCTVVQAALG 297 (412)
T ss_dssp CBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHH
T ss_pred hccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhhcchhhhhhhcccccc-ccCCchhhhhhcc
Confidence 999876554433322 223567889999999999999999999754 333433333332 2345555555555
Q ss_pred HHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHcc
Q 018665 226 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 305 (352)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (352)
..+... ..+++.+.++.++++++.+.+.|.+.+|+.+..|++|+|+|++++..... ...+..+++++|++++
T Consensus 298 ~~~~~~--~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~------~~~~~~~~~~~ll~~~ 369 (412)
T d1bw0a_ 298 EALLNT--PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYR------DIKTDVEFFEKLLEEE 369 (412)
T ss_dssp HHHHSS--CHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBS------SCCSHHHHHHHHHHHH
T ss_pred cccccc--cccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhcC------CCCCHHHHHHHHHHhC
Confidence 554432 36789999999999999999999887799999999999999988632110 1126788999999888
Q ss_pred CEEeccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 306 QVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 306 gi~i~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
||.+.||+.|+.++++||+++.+++++++++++|++++++..
T Consensus 370 gV~v~PG~~Fg~~g~iRis~~~~~e~l~eal~Rl~~~l~~~~ 411 (412)
T d1bw0a_ 370 NVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHA 411 (412)
T ss_dssp CEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred CEEEEeccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999899999999999999998764
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.3e-47 Score=344.53 Aligned_cols=315 Identities=36% Similarity=0.637 Sum_probs=281.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
..|+++.|..++| +++++++. +++.+.++++|++|+|+++++..++.+++++||.|++++|+|..+...+...
T Consensus 59 ~~Y~~~~G~~~lR------~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~ 132 (375)
T d1o4sa_ 59 VKYTDPRGIYELR------EGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILA 132 (375)
T ss_dssp CCCCCTTCCHHHH------HHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT
T ss_pred cCCCCCcCCHHHH------HHHHhhhhhccccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhcc
Confidence 4599999999999 99999999 8999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
+..+..++.+.++++..+.+.++....++++++++++||||||.+++.+++++|+++|+++ +++||+||+|.++.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~ 211 (375)
T d1o4sa_ 133 GGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKR-NFYIISDEVYDSLVYTDE 211 (375)
T ss_dssp TCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBCSSC
T ss_pred ccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHc-CCceehHhhhcccccccc
Confidence 9999999999888888999999999999999999999999999999999999999999999 999999999998877654
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
.... ......+++++++.|+||.++++|+|+||++++++.++.+...........+...+......++. +...
T Consensus 212 ~~~~-~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 284 (375)
T d1o4sa_ 212 FTSI-LDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEV------DNSY 284 (375)
T ss_dssp CCCH-HHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTC------CCHH
T ss_pred cccc-ccccCCCCCEEEEeechhhccCCccccccccccccchhhhhhhhccccccccccchhhhhhhccc------chhh
Confidence 4333 23344578999999999999999999999999999999888877777777777777766665543 2345
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCe
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 320 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~ 320 (352)
..+.++++++.+.+.|++. |+++..|++|+|+|++++. +..+++.+|++++||.+.||..|+.+++
T Consensus 285 ~~~~~~~r~~~~~~~l~~~-g~~~~~p~gg~f~~~~~~~-------------~~~~~~~~ll~~~gV~v~pG~~F~~~g~ 350 (375)
T d1o4sa_ 285 MVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVRG-------------DDVKFCERLLEEKKVALVPGSAFLKPGF 350 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECSS-------------CHHHHHHHHHHHHCEECEEGGGGTCTTE
T ss_pred hHHHHHHHHHHHHHHHHhc-CceEecCCccEEEEEECCC-------------CHHHHHHHHHHhCCEEEEEccccCCCCe
Confidence 5667888899999999987 9999999999999999985 6777888888777999999999999999
Q ss_pred EEEEeecCHHHHHHHHHHHHHHHh
Q 018665 321 IRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 321 iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
+||+++.+++++++++++|+++++
T Consensus 351 iRis~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 351 VRLSFATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCHHHHHHHHHHHHHHhc
Confidence 999999899999999999999985
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=2.1e-47 Score=350.55 Aligned_cols=330 Identities=20% Similarity=0.362 Sum_probs=275.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcC--CCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH-
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR- 78 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~--~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~- 78 (352)
.|+++.|.++|| +++|++++ +++ +++++++|++|+|+++++..++.+++++||.|+++.|+|..+...++
T Consensus 79 ~Y~~~~G~~~LR------~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~ 152 (431)
T d1m7ya_ 79 LFQDYHGLPAFK------KAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKW 152 (431)
T ss_dssp HCCCTTCCHHHH------HHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTT
T ss_pred CCcCCcCcHHHH------HHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHH
Confidence 599999999999 99999999 766 45678999999999999999999999999999999999999988887
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhcc------CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLT------EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~------~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
..|.+++.++++.++++.+|++.+++.+. .+++++++++||||||.+++.+++++|+++|+++ |+++|+||+|
T Consensus 153 ~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~-~~~vI~De~Y 231 (431)
T d1m7ya_ 153 RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK-GIHLISDEIY 231 (431)
T ss_dssp TTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTT
T ss_pred hcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCcccccccccccccccccccccccc-Ccceeecccc
Confidence 46899999999888888899999888774 3678999999999999999999999999999999 9999999999
Q ss_pred cccccCCCCccccccCC---------CCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHH
Q 018665 153 EHIIYAPATHTSFASLP---------GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKA 223 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~---------~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (352)
+.+.|++..+.++..+. ...++++++.|+||.+|++|+|+||++++++++.......... ...++..+.+
T Consensus 232 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~ 310 (431)
T d1m7ya_ 232 SGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF-GLVSSQTQHL 310 (431)
T ss_dssp GGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGG-SCCCHHHHHH
T ss_pred cccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhcc-ccccccccch
Confidence 99988876555544322 2246899999999999999999999999988776655444333 3455666666
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 224 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
+.+.+.......+++.+.++.++++++.+.+.|++. |+.+..+++|+|+|++++....... .++..+++++|++
T Consensus 311 ~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~~~~p~gg~f~w~~l~~~~~~~~-----~~~~~~l~~~ll~ 384 (431)
T d1m7ya_ 311 LSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSNT-----FEAEMELWKKIVY 384 (431)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSSSS-----HHHHHHHHHHHHH
T ss_pred hhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC-CcEEecCCceeEEEEECccccccCc-----ccCHHHHHHHHHH
Confidence 666665422224678888889999999999999886 9999999999999999986532110 1135578899998
Q ss_pred ccCEEeccCCCCCC--CCeEEEEeec-CHHHHHHHHHHHHHHHhhh
Q 018665 304 KAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 304 ~~gi~i~~g~~~~~--~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~ 346 (352)
++||.+.||+.|+. ++|+||+++. +++++++++++|+++++++
T Consensus 385 ~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 385 EVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp TSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HCCEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence 88999999998874 6899999986 8889999999999999875
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-47 Score=348.74 Aligned_cols=335 Identities=28% Similarity=0.511 Sum_probs=291.6
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
+.|++..|.+++| +.+|++++ ++|+++.+ ++|++|+|+++++..++.+++++|+.|+++.|+|+.|...+..
T Consensus 58 ~~Y~~~~G~~~LR------eaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~ 131 (418)
T d1w7la_ 58 NQYTKTFGYPPLT------KILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMM 131 (418)
T ss_dssp GSCCCTTCCHHHH------HHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH
T ss_pred cCCCCCcCCHHHH------HHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHH
Confidence 3599999999999 99999999 88988875 7899999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccC----------CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEec
Q 018665 80 ADATPVILPTRI----------SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 80 ~g~~v~~i~~~~----------~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD 149 (352)
.|.+++.++..+ +.++.+|.+++.....++++++++++||||||.+++.+++++|+++|+++ ++++|+|
T Consensus 132 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~-~v~vI~D 210 (418)
T d1w7la_ 132 AGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQH-DVVCITD 210 (418)
T ss_dssp TTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEE
T ss_pred cCCEeeccccccccccccccccccCcccchhhhhccccccccceeccCcCCcccccccHHHHHHHHHHHHhc-CCCchhh
Confidence 999999888654 23566788888888888999999999999999999999999999999999 9999999
Q ss_pred ccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhc
Q 018665 150 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALG 229 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 229 (352)
|+|.++.+++....++..+....++++++.|+||.++++|+|+||+++++++++.+.+.......+++++.|.++..++.
T Consensus 211 e~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~ 290 (418)
T d1w7la_ 211 EVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFE 290 (418)
T ss_dssp CTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHH
T ss_pred hhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccchhhhhhhccccccccccccchhhHHHHHHhh
Confidence 99999999887777888877767899999999999999999999999999999999988887788899999998888876
Q ss_pred ccC----CChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCccc--CCCCCCChHHHHHHHHH
Q 018665 230 LGY----AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAE--GFGKIENSESLCRYLLD 303 (352)
Q Consensus 230 ~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 303 (352)
... ...+++...++.++++++.+.+.|+++ |+.+..|++|+|+|+++++....... +.....+..+++++|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 369 (418)
T d1w7la_ 291 REQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIK 369 (418)
T ss_dssp HHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHH
T ss_pred hccccccccccccccchhhhhhhhhhhhhhhhhc-CCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHH
Confidence 521 124677888999999999999999998 99999999999999998753222111 11111246789999998
Q ss_pred ccCEEeccCCCCCC-------CCeEEEEeecCHHHHHHHHHHHHHHHh
Q 018665 304 KAQVALVPGDAFGD-------DTCIRISYAASLTTLQAAVERIKKGLL 344 (352)
Q Consensus 304 ~~gi~i~~g~~~~~-------~~~iRi~~~~~~~~l~~~~~~l~~~~~ 344 (352)
++||.+.||+.|+. ++++|||++.+++++++++++|++...
T Consensus 370 ~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 370 NKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKV 417 (418)
T ss_dssp HHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred HCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 89999999998863 479999998899999999999998764
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=3.9e-47 Score=348.44 Aligned_cols=330 Identities=19% Similarity=0.348 Sum_probs=272.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCC--CCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGL--SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 78 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~--~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~ 78 (352)
+.|+++.|.++|| +++|+++. ++|. .+++++|++|+|+++++..++.+++++||.|++++|+|..+...+.
T Consensus 77 ~~Y~~~~G~~~LR------~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~ 150 (428)
T d1iaya_ 77 ANFQDYHGLPEFR------KAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLR 150 (428)
T ss_dssp HHCCCTTCCHHHH------HHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTT
T ss_pred ccCcCCcchHHHH------HHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHH
Confidence 3699999999999 99999999 7765 4578999999999999999999999999999999999999988776
Q ss_pred h-cCCeEEEecccCCCCcccCHHHHHhhc------cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 79 I-ADATPVILPTRISENFLLDPKVLESKL------TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 79 ~-~g~~v~~i~~~~~~~~~~d~~~l~~~l------~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
. .|.+++.++++.++++.+|++.++.++ ..+++++++++||||||.+++.+++++|+++|+++ |++||+||+
T Consensus 151 ~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~-~~~vI~De~ 229 (428)
T d1iaya_ 151 WRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH-NIHLVCDEI 229 (428)
T ss_dssp TTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECT
T ss_pred HhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccC-cEEEEeccc
Confidence 4 589999999998888999998887654 34788999999999999999999999999999999 999999999
Q ss_pred ccccccCCCCccccccCC-------CCCCceEEEeccccccccccceeEEEEcCh-hHHHHHHhhhhccccCCChHHHHH
Q 018665 152 YEHIIYAPATHTSFASLP-------GMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKA 223 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 223 (352)
|+++.|++..+.++.++. ...++++++.|+||.++++|+|+||+++++ .+.+.+...... ...+...+.+
T Consensus 230 Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~ 307 (428)
T d1iaya_ 230 YAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYF 307 (428)
T ss_dssp TGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHH
T ss_pred ccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcc--cccccccccc
Confidence 999988876665554432 235789999999999999999999999855 555555554433 2466667766
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 224 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
+.+.+......++++++.++.++++++.+.+.|+.. |+++..|++|+|+|++++....... ..+..+++++|++
T Consensus 308 ~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~~~p~gg~f~w~~l~~~~~~~~-----~~~~~~l~~~Ll~ 381 (428)
T d1iaya_ 308 LAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLREST-----FDSEMSLWRVIIN 381 (428)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCSSSS-----HHHHHHHHHHHHH
T ss_pred hhhhhhhhccccccccccccccchhHHHHHHHHHhC-CCEEecCCcceEEEEECccccccCC-----CCCHHHHHHHHHH
Confidence 666666422224567778888899999999999875 9999999999999999976432110 0134578899998
Q ss_pred ccCEEeccCCCCCC--CCeEEEEeec-CHHHHHHHHHHHHHHHhhh
Q 018665 304 KAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 304 ~~gi~i~~g~~~~~--~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~ 346 (352)
++||.+.||..|+. ++++||+++. +++++++++++|++++...
T Consensus 382 ~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~~ 427 (428)
T d1iaya_ 382 DVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp TSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred hCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 88999999998874 6899999986 7788999999999998653
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.4e-46 Score=334.79 Aligned_cols=319 Identities=27% Similarity=0.473 Sum_probs=285.9
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCC-cEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHh
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI 79 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~ 79 (352)
+.|++..|.+++| +++|+++. ++|+...++ +|++|+|+++++..++.+++++||.|++++|+|..+...++.
T Consensus 57 ~~Y~~~~G~~~LR------eaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~ 130 (382)
T d1u08a_ 57 NQYAPMTGVQALR------EAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIAL 130 (382)
T ss_dssp CSCCCTTCCHHHH------HHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH
T ss_pred CCCCCCcCCHHHH------HHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhhhh
Confidence 3599999999999 99999999 889988776 599999999999999999999999999999999999999999
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.|..+..++.+. .++..|++++++..+++++++++++||||||.+++.+++++|+++|.++ ++.++.|+.+..+.+.+
T Consensus 131 ~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~-~~~ii~d~~~~~~~~~~ 208 (382)
T d1u08a_ 131 SGGIVKRMALQP-PHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGH-EIFVISDEVYEHINFSQ 208 (382)
T ss_dssp TTCEEEEEECCT-TTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTS-CCEEEEECTTTTCBCCS
T ss_pred ccccceeccccc-ccccCCHHHHhhhhccCccEEEECCCCcccccccccccchhhhhhhccc-cceeeeecchhhccccc
Confidence 999988888764 5567899999999999999999999999999999999999999999999 99999999999887776
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
....+........++++++.|+||.++++|+|+||+++++++++.+.........+++.+.|.++..+++. .++++.
T Consensus 209 ~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~ 285 (382)
T d1u08a_ 209 QGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRA---EPEHYL 285 (382)
T ss_dssp SCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH---CTHHHH
T ss_pred cccccccccccccCcEEEEeeccccccCCcccchhhhccchhHHHHHhhhccccccccccccccccccccc---chHHHH
Confidence 55555555544467899999999999999999999999999999998887777788999999999999987 368899
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 240 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
..++.++++++.+.+.+... |+.+..|++|+|+|++++.... .+..+++++|++++||.+.||+.|+.
T Consensus 286 ~~~~~~~~~~~~l~~~~~~~-g~~~~~p~gg~~~~~~~~~~~~---------~d~~e~~~~ll~e~gV~v~PG~~F~~~~ 355 (382)
T d1u08a_ 286 ALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVST---------LDDVEFCQWLTQEHGVAAIPLSVFCADP 355 (382)
T ss_dssp THHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTCC---------SCHHHHHHHHHHHSCEECEEGGGGCSSC
T ss_pred HHHHHHHhhhhhhhhhhccC-CcEEecCCceEEEEEecCCCCC---------CCHHHHHHHHHHHCCEEEEcchhhCCCC
Confidence 99999999999999999876 9999999999999999986421 27889999998888999999998863
Q ss_pred --CCeEEEEeecCHHHHHHHHHHHHH
Q 018665 318 --DTCIRISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 318 --~~~iRi~~~~~~~~l~~~~~~l~~ 341 (352)
.+++|||++.++|++++++++|++
T Consensus 356 ~~~~~~Ris~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 356 FPHKLIRLCFAKKESTLLAAAERLRQ 381 (382)
T ss_dssp CCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence 358999998889999999999875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=1.6e-45 Score=334.32 Aligned_cols=321 Identities=23% Similarity=0.334 Sum_probs=268.8
Q ss_pred CCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEE
Q 018665 7 SQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~ 85 (352)
+.|.+++| +++|+++. ++|+++++++|++|+|+++++..++.+++++||.|++++|.|.++....+..|...+
T Consensus 65 ~~g~~~Lr------~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v 138 (394)
T d1c7na_ 65 TGPTEEYK------KTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKII 138 (394)
T ss_dssp BCCCHHHH------HHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEE
T ss_pred CCCCHHHH------HHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccccccccccccccCcccchhhHHhhhhhccc
Confidence 45788999 99999999 889999999999999999999999999999999999999999999999999999998
Q ss_pred EecccC-CCCcccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcc
Q 018665 86 ILPTRI-SENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 163 (352)
Q Consensus 86 ~i~~~~-~~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~ 163 (352)
.++... +..+.+|.+.++..+. ++++++++++||||||.+++.+++++|+++|+++ |++||+||+|+++.+++..+.
T Consensus 139 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~ 217 (394)
T d1c7na_ 139 ECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKS-DLMLWSDEIHFDLIMPGYEHT 217 (394)
T ss_dssp ECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHS-SCEEEEECTTTTCBCTTCCCC
T ss_pred ccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhcccccc-ceeEeccccccccccCCcccc
Confidence 888753 3556689888888774 5789999999999999999999999999999999 999999999999988876555
Q ss_pred ccccCC-CCCCceEEEeccccccccccceeEEEEcChh-HHHHHHhhhhccccCCChHHHHHHH-HHhcccCCChHHHHH
Q 018665 164 SFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQSQFTSGASSISQKAGV-AALGLGYAGGEVVSK 240 (352)
Q Consensus 164 ~~~~~~-~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 240 (352)
+..... ...++++++.|+||.++++|+|+||+++++. +.+.+..........+....+.++. ..... ..++.++
T Consensus 218 ~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~ 294 (394)
T d1c7na_ 218 VFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKE---CGKWLDG 294 (394)
T ss_dssp CGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH---CHHHHHH
T ss_pred chhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcc---hhhhhcc
Confidence 544332 2246889999999999999999999998764 5555665554444344443333333 23222 3678888
Q ss_pred HHHHHHHHHHHHHHHhccc-CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC--
Q 018665 241 MVKAFRERRDFLVKSFGEL-EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-- 317 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-- 317 (352)
.++.++++++.+.+.++.. +++.+..|++++|+|++++... .++.+++++|++++||.+.||+.|+.
T Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~~----------~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~ 364 (394)
T d1c7na_ 295 CIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK----------MDHKAMEEFMIHKAQIFFDEGYIFGDGG 364 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC----------CCHHHHHHHHHHTTCCCCEEGGGGCGGG
T ss_pred cccccchhhhhhhhhhhccccceeecCCCceeEEEEECCCCC----------CCHHHHHHHHHHhCCEEEEcchhhCCCC
Confidence 8999999999998888753 6788888999999999998632 27889999999888999999999975
Q ss_pred CCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 318 DTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 318 ~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
++++|||++.++|+|++++++|++++++++
T Consensus 365 ~~~iRis~~~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 365 IGFERINLAAPSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp TTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 579999998888999999999999999874
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.8e-45 Score=330.34 Aligned_cols=320 Identities=24% Similarity=0.444 Sum_probs=275.9
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
+.|++..|..++| +++|+++. ++|+.+++++|++|+|+++++..++.+++++||.|++++|+|..+...++..
T Consensus 58 ~~Y~~~~G~~~LR------~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~ 131 (389)
T d2gb3a1 58 VYYSHSAGIWELR------EAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIA 131 (389)
T ss_dssp CCCCCTTCCHHHH------HHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHH
T ss_pred CCCCCCcCCHHHH------HHHHHHHHHhcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCcccccccccc
Confidence 4699999999999 99999999 8899999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|..+..++.+.+. +..+.+.+.....++++++++++||||||.+++.+++++|+++|+++ |++||+||+|..+.+++.
T Consensus 132 g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~ 209 (389)
T d2gb3a1 132 GVKLIPVTRRMEE-GFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERH-GLFLIVDEVYSEIVFRGE 209 (389)
T ss_dssp TCEEEEEECCGGG-TSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSC
T ss_pred Ccccccccccccc-ccchhhhhhhhcccCccEEEeCCCCccccccchHHHHHHHHhhcccC-CEEEEEeccccccccccc
Confidence 9999999987543 33455677777888999999999999999999999999999999999 999999999999888765
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
...... ...++++++.|+||.++++|+|+||++++++.+............+++.+.+.++..++.. .+.++++
T Consensus 210 ~~~~~~---~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~ 283 (389)
T d2gb3a1 210 FASALS---IESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNL---DDSFFDF 283 (389)
T ss_dssp CCCGGG---SCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTC---CHHHHHH
T ss_pred cccccc---cccccccccccccccccCcccceeeeeccchhHHHHHhhhhhccccccccccccccccccc---cchhccc
Confidence 433322 2357889999999999999999999999776555444333445567788888888888765 3788999
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc-----cCEEeccCCCC
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-----AQVALVPGDAF 315 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~gi~i~~g~~~ 315 (352)
.++.++++++.+.+.|+++++..+..|++|+|+|+++|.. ++.++++.|+++ .|+.+.||+.|
T Consensus 284 ~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~~------------~~~~~~~~ll~e~~l~~~~v~v~pg~~f 351 (389)
T d2gb3a1 284 VRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVE------------DAEEFARWMLTDFNMDGETTMVAPLRGF 351 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSSS------------CHHHHHHHHHHSCCBTTEEEECEEGGGG
T ss_pred ccccccccchhhhhhhhhhccccccCCCceEEEEEeCCCC------------CHHHHHHHHHHhhhhhhCCEEEEeCccc
Confidence 9999999999999999998566777899999999999865 788899988764 37889999887
Q ss_pred CC-----CCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 316 GD-----DTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 316 ~~-----~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
+. ++++||+++.+++++++++++|+++++++.
T Consensus 352 ~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~f~ 388 (389)
T d2gb3a1 352 YLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFC 388 (389)
T ss_dssp CSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHHhh
Confidence 63 469999998899999999999999998863
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-45 Score=329.22 Aligned_cols=322 Identities=16% Similarity=0.289 Sum_probs=268.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|++..| .++| +++++++. ++|.++++++|++|+|+++++..++.+++++||+|++++|+|..+..+++..|
T Consensus 31 ~Y~~~~g-~~lr------~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g 103 (361)
T d1d2fa_ 31 GYSRWKN-DEFL------AAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQ 103 (361)
T ss_dssp CCCCSCC-HHHH------HHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHTT
T ss_pred CCCCCCC-HHHH------HHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccccccccccccccccchhHHHHhhc
Confidence 4777777 6799 99999999 88999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccC-CCCcccCHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCC
Q 018665 82 ATPVILPTRI-SENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 159 (352)
Q Consensus 82 ~~v~~i~~~~-~~~~~~d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~ 159 (352)
.+++.++.+. .+++.+|++++++.+. ++++++++++||||||.+++.+++++|+++|+++ |+++|+||+|+++.+.+
T Consensus 104 ~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~-~~~lI~De~y~~~~~~~ 182 (361)
T d1d2fa_ 104 RTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERH-GVRVISDEIHMDMVWGE 182 (361)
T ss_dssp CEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHT-TCEEEEECTTTTCBCSS
T ss_pred ceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhhhh-heeeeeccccccccccc
Confidence 9999998765 3556789999999885 5889999999999999999999999999999999 99999999999998877
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChh-HHHHH-Hhhhhcc-ccCCChHHHHHHHHHhcccCCChH
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAAC-NKIQSQF-TSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
....++.... .++++++.|+||.++++|+|+||++.+.. ..... ....... ..+++...+.+....+.. ..+
T Consensus 183 ~~~~~~~~~~--~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~ 257 (361)
T d1d2fa_ 183 QPHIPWSNVA--RGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ---GAP 257 (361)
T ss_dssp SCCCCGGGTC--CSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH---CHH
T ss_pred cccccccccc--ccccccccccccccccccccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhc---cch
Confidence 6666665544 47889999999999999999999876543 33332 2222222 223455555554445544 367
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
+.++.+..++++++.+.+.+.+ .+++.+..|++|+++|++++... .++.+++++|++++||.+.||+.|
T Consensus 258 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~----------~~~~~~~~~Ll~~~gv~v~pG~~F 327 (361)
T d1d2fa_ 258 WLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN----------IDDNALQKALIEQEKVAIMPGYTY 327 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC----------CCHHHHHHHHHHTTCEECEEGGGG
T ss_pred hhhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccCCC----------CCHHHHHHHHHHhCCEEEEecccc
Confidence 7888888888888888877765 36788888999999999986421 288999999998889999999988
Q ss_pred CC--CCeEEEEeecCHHHHHHHHHHHHHHHhhhC
Q 018665 316 GD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 316 ~~--~~~iRi~~~~~~~~l~~~~~~l~~~~~~~~ 347 (352)
+. ++++|||++.+++++++++++|++++++++
T Consensus 328 ~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 328 GEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp CGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 74 468999998888999999999999999875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=2.8e-45 Score=333.99 Aligned_cols=323 Identities=17% Similarity=0.325 Sum_probs=276.8
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
.|+++.|.+++| +++|+++. ++|.++++++|++|+|+++++..++.+++++||.|++++|+|..+...++..|
T Consensus 66 ~Y~~~~G~~~lR------~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g 139 (403)
T d1wsta1 66 QYGTTKGFTPLR------LALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYD 139 (403)
T ss_dssp SCCCSSCCHHHH------HHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTC
T ss_pred CCCCCcCCHHHH------HHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhcc
Confidence 499999999999 99999999 89999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccCCCCcccCHHH----HHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc
Q 018665 82 ATPVILPTRISENFLLDPKV----LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 157 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~----l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~ 157 (352)
.+++.++.+.+..+...... .....++...++++++||||||.+++.+++++|+++|++| |++||+||+|.++.+
T Consensus 140 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~-~~~li~De~y~~l~~ 218 (403)
T d1wsta1 140 PEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEY-DFLIVEDGPYSELRY 218 (403)
T ss_dssp CEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBC
T ss_pred ccceeEeecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhc-Cceeccccchhheec
Confidence 99999998754432222222 1112234556777899999999999999999999999999 999999999999998
Q ss_pred CCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHH
Q 018665 158 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
++....++..... .+++++++|+||.++ +|+|+||+++++++++.+..........++...+.+..+.+..... ..+
T Consensus 219 ~~~~~~~~~~~~~-~~~~i~~~S~SK~~~-~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 295 (403)
T d1wsta1 219 SGEPTPPIKHFDD-YGRVIYLGTFSKILA-PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYL-DEH 295 (403)
T ss_dssp SSCCCCCGGGGCS-SSCEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHH
T ss_pred CCCCCCcccccCC-CCcEEEEccccceec-CcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhcccc-chh
Confidence 8876666665543 689999999999997 9999999999999999988877777778888888888877776433 566
Q ss_pred HHHHHHHHHHHHHHHHHHhccc--CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 238 VSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~--~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
+++.++.++++++.+.+.|.+. .++.+..|.+|+|+|+++|+.. +...+++.|.++ ||.+.||+.|
T Consensus 296 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~~~~-----------~~~~~~~~l~~~-gV~v~pg~~f 363 (403)
T d1wsta1 296 IPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGI-----------DTKLMMERAVAK-GVAYVPGEAF 363 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECCTTC-----------CTTTTHHHHHHT-TEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEEEECCCCC-----------CHHHHHHHHHHC-CEEEEechhh
Confidence 7888889999999999988874 4788889999999999999764 677788888866 9999999877
Q ss_pred CC----CCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 316 GD----DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 316 ~~----~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
+. ++++||+++. +++++++++++|++++++..
T Consensus 364 ~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~ 400 (403)
T d1wsta1 364 FVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEM 400 (403)
T ss_dssp STTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 53 5799999986 89999999999999998754
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.1e-45 Score=334.49 Aligned_cols=321 Identities=20% Similarity=0.347 Sum_probs=272.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCC-CCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLS-YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~-~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
.|+++.|.++|| +++|+++. ++|+. +++++|++|+|+++++..++.+++++||.|++++|+|..+...++..
T Consensus 75 ~Y~~~~G~~~LR------~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~ 148 (420)
T d1vp4a_ 75 QYSTTEGDPVLK------QQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQY 148 (420)
T ss_dssp SCCCTTCCHHHH------HHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT
T ss_pred CCCCCcCCHHHH------HHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHH
Confidence 499999999999 99999999 88886 68999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhcc--------CC-eeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLT--------EK-SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~--------~~-~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
|.+++.++.++. +.+++.+...+. .+ ..++++++||||||.+++.+++++|+++|+++ ++++|+||+
T Consensus 149 g~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~-~i~ii~De~ 224 (420)
T d1vp4a_ 149 LANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY-DLFIVEDDP 224 (420)
T ss_dssp TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred hhhccccccccc---ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcc-cccccccch
Confidence 999999998643 357776654331 23 34556789999999999999999999999999 999999999
Q ss_pred ccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhccc
Q 018665 152 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 231 (352)
|.++.+++....+...... .+++++++|++|.++ +|+|+||+++++++++.+.+....+..+++.+.|.+++..+...
T Consensus 225 y~~l~~~~~~~~~~~~~~~-~~~~i~~~s~sk~~~-~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~ 302 (420)
T d1vp4a_ 225 YGALRYEGETVDPIFKIGG-PERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERY 302 (420)
T ss_dssp STTCBCSSCCCCCHHHHHC-TTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHS
T ss_pred hhhccccCccccccccccc-ccceeEEeccccccc-cccccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccc
Confidence 9999887765555444433 578889999999886 99999999999999999988888788889999999888888764
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhcc----cCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 232 YAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
.. .+++++.++.++++++.+.+.|++ .+|+++..|.+|+|+|+++|+.. ++.++.+.|.++ ||
T Consensus 303 ~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~~-----------d~~~~~~~l~~~-gV 369 (420)
T d1vp4a_ 303 DL-LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGF-----------DTWEMFEYAKRK-KV 369 (420)
T ss_dssp CH-HHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTC-----------CTTTTHHHHHHH-TE
T ss_pred cc-cccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCCC-----------CHHHHHHHHHHC-Ce
Confidence 43 566677777788777777666654 47899999999999999998753 677787777765 99
Q ss_pred EeccCCCCCC----CCeEEEEeec-CHHHHHHHHHHHHHHHhhhCC
Q 018665 308 ALVPGDAFGD----DTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 308 ~i~~g~~~~~----~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+.||+.|+. .+++|||++. ++|++++++++|+++++++.+
T Consensus 370 ~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~~l~~~~~ 415 (420)
T d1vp4a_ 370 FYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGK 415 (420)
T ss_dssp ECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHhhH
Confidence 9999998864 4699999986 889999999999999998764
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.7e-44 Score=321.95 Aligned_cols=309 Identities=28% Similarity=0.501 Sum_probs=270.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
+.|+++.|..++| +++|++++ +++++|++|+|+++++..++.++++++|.|++++|+|..+...++..|
T Consensus 55 ~~Y~~~~G~~elr------~aiA~~~~-----~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g 123 (368)
T d1v2da_ 55 DQYAPPAGLPALR------EALAEEFA-----VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAG 123 (368)
T ss_dssp CSCCCTTCCHHHH------HHHHHHHT-----SCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT
T ss_pred cCCCCCcCCHHHH------HHHHhhcc-----cCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcC
Confidence 3599999999999 99999997 889999999999999999999999999999999999999999999999
Q ss_pred CeEEEecccC-CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 82 ATPVILPTRI-SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 82 ~~v~~i~~~~-~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
.+++.++++. .+++.+|++.+++.++++++.+++++||||||..++.+++++|+++|+++ |+++|+||+|..+.....
T Consensus 124 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~-~i~ii~D~~~~~~~~~~~ 202 (368)
T d1v2da_ 124 AKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISDEVYDELYYGER 202 (368)
T ss_dssp CEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSC
T ss_pred CccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHc-CCeeeechhhhhhccccc
Confidence 9999998864 35577999999999999999999999999999999999999999999999 999999999987655443
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
...... ...++.+++.|+||.++++|+|+||+++++++++.+.........+++.+.|.++..++..... ..+++.
T Consensus 203 ~~~~~~---~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~ 278 (368)
T d1v2da_ 203 PRRLRE---FAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEA 278 (368)
T ss_dssp CCCHHH---HCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHH
T ss_pred cccccc---ccccccceeecccccccccccccccccccccccchhhhhhhccccccccccccccccccccccc-hhhHHH
Confidence 322222 1246778899999999999999999999999999998888878888999999988888875332 467888
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC---
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--- 317 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~--- 317 (352)
.++.++++++.+.+.|+++ |+++..|++++|+|+++|+. +..+ |++++||.+.||+.|+.
T Consensus 279 ~~~~~~~~~~~l~~~l~~~-g~~~~~p~g~~~~~~~l~~~------------~~~~----ll~~~gI~v~pg~~F~~~~~ 341 (368)
T d1v2da_ 279 LREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW------------DAFR----LVEEARVALIPASAFYLEDP 341 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC------------CHHH----HHHHTCEECEEGGGGCSSSC
T ss_pred HHHHHHHhhhhhhhhHHhc-CcEEecCCceeEEEEeCCcc------------HHHH----HHHhCCEEEEechhhCCCCC
Confidence 9999999999999999988 99999999999999999853 4443 34456999999998863
Q ss_pred -CCeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 318 -DTCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 318 -~~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
++++|||++.++|++++++++|++++
T Consensus 342 ~~~~iRis~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 342 PKDLFRFAFCKTEEELHLALERLGRVV 368 (368)
T ss_dssp CTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence 57999999888999999999999874
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-41 Score=300.92 Aligned_cols=298 Identities=21% Similarity=0.346 Sum_probs=248.1
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCC-EEEecCCCCCChHHHHHhc
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD-EVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~-~vl~~~~~~~~~~~~~~~~ 80 (352)
+.| |+++..+|| +++|++++ +++++|++|+|+++++..++.+++++|| .|+++.|+|..+...++..
T Consensus 51 ~rY-Pd~~~~~Lr------~~ia~~~g-----v~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~ 118 (354)
T d1fg7a_ 51 NRY-PECQPKAVI------ENYAQYAG-----VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI 118 (354)
T ss_dssp TSC-CCSSCHHHH------HHHHHHHT-----SCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHH
T ss_pred hcC-CCCcHHHHH------HHHHHHhC-----CChHHeeeccCchHHHHHHHHHhhccccccccccccccccchhhhhcc
Confidence 456 778889999 99999997 8899999999999999999999999998 6889999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
|.+++.++.. +++.+|+++++..+. +++++++++||||||.+++.++++.+.+.++ + +.++|+||++.++..+..
T Consensus 119 g~~v~~~~~~--~~~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~-~~~~iidd~~~~f~~~~~ 193 (354)
T d1fg7a_ 119 GVECRTVPTL--DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-G-KAIVVADEAYIEFCPQAS 193 (354)
T ss_dssp TCEEEECCCC--TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-T-TCEEEEECTTGGGSGGGC
T ss_pred Cceeeccccc--cccccchhhhhhccc-ccceeeccCCCccceeEeeeccccccccccc-c-cccccccccchhhccccc
Confidence 9999988876 567899999998875 7999999999999999999999988888775 4 577777888887654332
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
.......+++++++.|+||.+|++|+|+||+++++++++.+.+....+ ..+.+.+.++.+++... ...+...
T Consensus 194 ----~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~~~~~--~~~~~~~~~a~~~~~~~--~~~~~~~ 265 (354)
T d1fg7a_ 194 ----LAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY--PLSTPVADIAAQALSPQ--GIVAMRE 265 (354)
T ss_dssp ----SGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS--CSCHHHHHHHHHHTSHH--HHHHHHH
T ss_pred ----cchhhcccccceEEeCCccccCCCccccccccccchhhhhhhhhcCcc--chhhHHHHHHHHHHhhh--ccccccc
Confidence 222334468999999999999999999999999999999998776544 47777777777766541 1244556
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC-CCCC
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GDDT 319 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~-~~~~ 319 (352)
..+++.++++.+.+.+.+++++....|++++|+|++++ ++.++++.|.++ ||.+++++.+ +.++
T Consensus 266 ~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~--------------~~~~~~~~L~~~-gIlvr~~~~~~~~~~ 330 (354)
T d1fg7a_ 266 RVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--------------ASSAVFKSLWDQ-GIILRDQNKQPSLSG 330 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--------------THHHHHHHHHHT-TEECEECTTSTTCTT
T ss_pred cchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCC--------------CHHHHHHHHHHC-CcEEecCCCCCCCCC
Confidence 66778888899999999987777777888999999986 577899998876 9999998765 4578
Q ss_pred eEEEEeecCHHHHHHHHHHHH
Q 018665 320 CIRISYAASLTTLQAAVERIK 340 (352)
Q Consensus 320 ~iRi~~~~~~~~l~~~~~~l~ 340 (352)
|+||+++ +.+|.+++++.|+
T Consensus 331 ~lRisig-t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 331 CLRITVG-TREESQRVIDALR 350 (354)
T ss_dssp EEEEECC-CHHHHHHHHHHHH
T ss_pred EEEEEeC-CHHHHHHHHHHHh
Confidence 9999986 5678888888886
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.3e-40 Score=297.89 Aligned_cols=301 Identities=19% Similarity=0.259 Sum_probs=251.7
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcC
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 81 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g 81 (352)
+.| |+++..+|| +.+|++++ +++++|++++|+++++..++..+. ++.+++..|.|..+.......+
T Consensus 52 ~~Y-p~~~~~~Lr------~aia~~~~-----v~~~~I~~~~g~~~~~~~~~~~~~--~~~~~v~~p~~~~~~~~~~~~~ 117 (355)
T d1lc5a_ 52 ERY-PDADYFHLH------QALARHHQ-----VPASWILAGNGETESIFTVASGLK--PRRAMIVTPGFAEYGRALAQSG 117 (355)
T ss_dssp GSC-CCTTCHHHH------HHHHHHHT-----SCGGGEEEESSHHHHHHHHHHHHC--CSEEEEEESCCTHHHHHHHHTT
T ss_pred ccC-CCCChHHHH------HHHHHHhC-----CCHHHEEecccHHHHHHHHHhhhc--cccccccCCccceecccccccc
Confidence 346 777889999 99999997 788999999999999887776664 4567778899999999999999
Q ss_pred CeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCC
Q 018665 82 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 161 (352)
Q Consensus 82 ~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~ 161 (352)
..+..++++.++++.++ +++++.+.++++++++++||||||.+++.+++++|+++|+++ ++++|+||+|.++.+.+..
T Consensus 118 ~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~-~~~li~De~y~~~~~~~~~ 195 (355)
T d1lc5a_ 118 CEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSL-NINLILDEAFIDFIPHETG 195 (355)
T ss_dssp CEEEEEECCGGGTTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGSTTCCC
T ss_pred ccceeeeeeccCCccce-eeeeeccccccceeeeecccCcccccchhhhhhhhhhhcccc-ccccccccceeeeeeeccc
Confidence 99999999877666665 557777888999999999999999999999999999999999 9999999999987665433
Q ss_pred ccccccCCCCCCceEEEeccccccccccceeEEEEcChhH-HHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 162 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
.. ......++++++.|+||.+|++|+|+||++++.+. .+.++... ..++.+.+.+.++.+++++ ..+..+
T Consensus 196 ~~---~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~~----~~~~~~ 266 (355)
T d1lc5a_ 196 FI---PALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQ--MPWSVNALAALAGEVALQD----SAWQQA 266 (355)
T ss_dssp SG---GGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHS--CTTCSCHHHHHHHHHGGGC----HHHHHH
T ss_pred cc---ccccccccceeecccccccccccccccceeccchhhhHHHHhhc--CCccccccccccccccccc----cchhHH
Confidence 22 22334679999999999999999999999998664 45454433 3456889999999999986 778888
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC--CC
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DD 318 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~--~~ 318 (352)
.++.++++++++.+.|.+++++++. |.+|+|+|++++. +..++++.|.++ ||.++||+.|. .+
T Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~-------------~~~~~~~~L~~~-gv~vr~~~~f~~~~~ 331 (355)
T d1lc5a_ 267 TWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCER-------------EDIDLQRRLLTQ-RILIRSCANYPGLDS 331 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESC-------------TTCCHHHHHHTT-TEECEECTTSTTCCT
T ss_pred HHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCC-------------CHHHHHHHHHHC-CcEEEeCccCCCCCC
Confidence 8999999999999999998888764 6778889999875 556788888865 99999998875 35
Q ss_pred CeEEEEeecCHHHHHHHHHHHHHHH
Q 018665 319 TCIRISYAASLTTLQAAVERIKKGL 343 (352)
Q Consensus 319 ~~iRi~~~~~~~~l~~~~~~l~~~~ 343 (352)
+++||+++ +++|+++++++|++++
T Consensus 332 ~~iRis~~-~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 332 RYYRVAIR-SAAQNERLLAALRNVL 355 (355)
T ss_dssp TEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred CEEEEEeC-CHHHHHHHHHHHHHhC
Confidence 89999986 6788999999999864
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=6.5e-40 Score=297.85 Aligned_cols=311 Identities=15% Similarity=0.114 Sum_probs=252.6
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChH-----HHHHHHHHHhcCCCCEEEecCCCCCChHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAK-----QSILQAVLAVCSPGDEVIIPAPFWVSYPEM 76 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~-----~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~ 76 (352)
.|+|..|.+++| +++++++. +++....++.|..+.++. .++..++++++++||.|++++|+|..|...
T Consensus 66 ~Y~~~~G~~~lr------~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~ 139 (401)
T d7aata_ 66 EYLPIAGLADFT------RASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPI 139 (401)
T ss_dssp CCCCTTCCHHHH------HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHH
T ss_pred CCCCCCCCHHHH------HHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhH
Confidence 499999999999 99999999 777677778887765443 456777788899999999999999999999
Q ss_pred HHhcCCeEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc
Q 018665 77 ARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 153 (352)
Q Consensus 77 ~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~ 153 (352)
++..|.+++.+++.+++++..+.+.+.+.+. ++++++++++||||||.+++.+++++|+++|+++ ++++|.||+|.
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~-~~~ii~De~Y~ 218 (401)
T d7aata_ 140 FRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR-NLLAYFDMAYQ 218 (401)
T ss_dssp HHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCT
T ss_pred HHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcc-eEEEEEeccch
Confidence 9999999999999888888889988887763 5788999999999999999999999999999999 99999999999
Q ss_pred ccccCCCCcccc--ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh-------hhccccCCChHHHHHH
Q 018665 154 HIIYAPATHTSF--ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAG 224 (352)
Q Consensus 154 ~~~~~~~~~~~~--~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 224 (352)
++.|++....+. .......++++++.|+||.++++|+|+||++++...++...+. ......+++.+.|.++
T Consensus 219 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 298 (401)
T d7aata_ 219 GFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIA 298 (401)
T ss_dssp TTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred hhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHH
Confidence 998876432222 1122224677889999999999999999999987766654332 2233456788888888
Q ss_pred HHHhcccCC---ChHHHHHHHHHHHHHHHHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHH
Q 018665 225 VAALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLC 298 (352)
Q Consensus 225 ~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
...+.+... ...+.+..+++++++++.+.+.|+++. .+.++.+++|+|+|+.+ ..+++
T Consensus 299 ~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l----------------s~e~~ 362 (401)
T d7aata_ 299 SLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL----------------KPEQV 362 (401)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCC----------------CHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCC----------------CHHHH
Confidence 888876321 124456777788889999999998761 25667889999999764 33567
Q ss_pred HHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHh
Q 018665 299 RYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 299 ~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~ 344 (352)
++|++++||.+.||. |||++. ++++|+++.++|.++++
T Consensus 363 ~~L~~e~gV~~~pg~--------Ris~a~~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 363 ERLTKEFSIYMTKDG--------RISVAGVASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp HHHHHHHCEECCTTC--------EEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred HHHHHhCCEEECCCc--------EEEeccCCHHHHHHHHHHHHHHhC
Confidence 888888899999984 999987 88999999999998864
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-37 Score=275.66 Aligned_cols=283 Identities=20% Similarity=0.318 Sum_probs=231.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+|+.|.+++| +++|+++++++ +++++|++|+|+++++..++.. +|+|++++|+|..+...++..|.
T Consensus 51 ~~yp~~g~~~Lr------~aia~~~~~~~--v~~d~I~it~G~~~~l~~l~~~----~d~v~i~~P~y~~~~~~~~~~g~ 118 (334)
T d2f8ja1 51 RIYYDSPDEELI------EKILSYLDTDF--LSKNNVSVGNGADEIIYVMMLM----FDRSVFFPPTYSCYRIFAKAVGA 118 (334)
T ss_dssp GSCCCSSCHHHH------HHHHHHHTCSS--CCGGGEEEEEHHHHHHHHHHHH----SSEEEECSSCCHHHHHHHHHHTC
T ss_pred cCCCCCCcHHHH------HHHHHHhcccC--CCcceEEecCcchhHHHHHhhh----ccccccccccccccccchhccCC
Confidence 355888999999 99999998555 5789999999999999876654 48999999999999999999999
Q ss_pred eEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 83 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 83 ~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
+++.++++.+.. .+ +...++++++++++||||||.+++.+++.+ + .++ ++++|+||++.++.+.....
T Consensus 119 ~~v~v~~~~~~~--~~-----~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~---~-~~~-~~~ii~Dd~~~~~~~~~~~~ 186 (334)
T d2f8ja1 119 KFLEVPLTKDLR--IP-----EVNVGEGDVVFIPNPNNPTGHVFEREEIER---I-LKT-GAFVALDEAYYEFHGESYVD 186 (334)
T ss_dssp CEEECCCCTTSC--CC-----CCCCCTTEEEEEESSCTTTCCCCCHHHHHH---H-HTT-TCEEEEECTTGGGTCCCCGG
T ss_pred cccccccccccc--cc-----ccccccceEEEecccccccceeecHHHhhc---c-ccc-eeEEeecccchhhccccccc
Confidence 999999875432 11 223457889999999999999999655544 3 467 89999999998754332211
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
.....++++++.|+||.++++|+|+||++++++++..+...... .+.+.+.+.++.+.+.. .+++++.+
T Consensus 187 -----~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~~~--~~~s~~~~~~a~~~l~~----~~~~~~~~ 255 (334)
T d2f8ja1 187 -----FLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP--FNVSYVSQMFAKVALDH----REIFEERT 255 (334)
T ss_dssp -----GGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHSCT--TCSCHHHHHHHHHHHHT----HHHHHHHH
T ss_pred -----ccccCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhhcc--cccchhhhhhccccccc----ccchhhHH
Confidence 11235799999999999999999999999999999999887654 45888899888888875 78889999
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEE
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 322 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iR 322 (352)
+.++++++.+.+.|+++ |+++.++.++ |+|+.++.. ++.++.+.|.++ ||.+.+. ++++|
T Consensus 256 ~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~~~~~------------~~~~~~~~L~~~-GI~vr~~-----~~~vR 315 (334)
T d2f8ja1 256 KFIVEERERMKSALREM-GYRITDSRGN-FVFVFMEKE------------EKERLLEHLRTK-NVAVRSF-----REGVR 315 (334)
T ss_dssp HHHHHHHHHHHHHHHHH-TCEECCCCSS-EEEEECCHH------------HHHHHHHHHHHT-TEECEEE-----TTEEE
T ss_pred HHHHHHHHHHHHHHHHC-CCeECCCCce-EEEEECCCC------------CHHHHHHHHHHC-CCEECCC-----CCeEE
Confidence 99999999999999998 8998877665 588888764 788999999876 9998653 68999
Q ss_pred EEeecCHHHHHHHHHHHHH
Q 018665 323 ISYAASLTTLQAAVERIKK 341 (352)
Q Consensus 323 i~~~~~~~~l~~~~~~l~~ 341 (352)
||++ +.+|+++++++|++
T Consensus 316 is~g-~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 316 ITIG-KREENDMILRELEV 333 (334)
T ss_dssp EECC-CHHHHHHHHHHHHH
T ss_pred EEcC-CHHHHHHHHHHHhc
Confidence 9986 45778999888876
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-39 Score=294.69 Aligned_cols=310 Identities=16% Similarity=0.132 Sum_probs=247.5
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHH----HHHHHHHhcCCCCEEEecCCCCCChHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQS----ILQAVLAVCSPGDEVIIPAPFWVSYPEMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a----~~~~~~~l~~~~~~vl~~~~~~~~~~~~~ 77 (352)
.|+|..|.+++| +++|+++. +++..+++++|..+.+++++ +..++..+..+||.|++++|+|..|...+
T Consensus 65 ~Y~p~~G~~~lR------~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~ 138 (397)
T d3tata_ 65 LYLPMEGLNCYR------HAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIF 138 (397)
T ss_dssp CCCCTTCCHHHH------HHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHH
T ss_pred CCCCcccCHHHH------HHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHH
Confidence 499999999999 99999998 77777788899888776664 44555566799999999999999999999
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+..|.+++.+|+..++++..|.+.+.+.+. ++++++++++||||||.+++.+++++|+++|+++ ++++|.||+|.+
T Consensus 139 ~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~ 217 (397)
T d3tata_ 139 AGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR-ELIPFLDIAYQG 217 (397)
T ss_dssp HTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHT-TCCCEECBSCTT
T ss_pred HHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhc-CeeEEeehhhhh
Confidence 999999999999988888888888777654 5778889999999999999999999999999999 999999999999
Q ss_pred cccCCCCcc-ccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHh-------hhhccccCCChHHHHHHHH
Q 018665 155 IIYAPATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVA 226 (352)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 226 (352)
+.|++.... +........++++++.|+||.++++|+|+||++++...++...+ .......+++...|.++..
T Consensus 218 l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 297 (397)
T d3tata_ 218 FGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAA 297 (397)
T ss_dssp SSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHH
T ss_pred hccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHH
Confidence 988653322 22222333578899999999999999999999987654443322 2233445677888888888
Q ss_pred HhcccCCC---hHHHHHHHHHHHHHHHHHHHHhccc-C--CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHH
Q 018665 227 ALGLGYAG---GEVVSKMVKAFRERRDFLVKSFGEL-E--GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 227 ~l~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~-~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
.+...... .+.++..+++++++++.+.+.|++. + .+.++.+++|+|+|+.++ .+++++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls----------------~e~~~~ 361 (397)
T d3tata_ 298 VLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----------------AAQVDR 361 (397)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCC----------------HHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcC----------------HHHHHH
Confidence 77752111 2334555667777888888888875 2 266778899999987653 356788
Q ss_pred HHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHH
Q 018665 301 LLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGL 343 (352)
Q Consensus 301 l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~ 343 (352)
|++++||.+.||+ |||++. ++++++++.++|++++
T Consensus 362 L~~e~~V~l~~g~--------Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 362 LREEFGVYLIASG--------RMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp HTTTTCEECCSSS--------CCBTTSCCTTTHHHHHHHHHHHC
T ss_pred HHHhCCEEeCCCC--------EEEeccCCHHHHHHHHHHHHHhC
Confidence 8888999999975 999977 8899999999998764
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=2.4e-37 Score=281.55 Aligned_cols=313 Identities=15% Similarity=0.126 Sum_probs=246.1
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEe--CChHHHHHHHH--HHhcCCCCEEEecCCCCCChHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVS--NGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~--~g~~~a~~~~~--~~l~~~~~~vl~~~~~~~~~~~~~ 77 (352)
.|+|..|.+++| +++++++. +.+.....+.+..+ .++..++..+. ..+..+||.|++++|+|..|...+
T Consensus 68 ~Y~p~~G~~~lr------~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~ 141 (412)
T d1yaaa_ 68 EYLGITGLPSLT------SNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIF 141 (412)
T ss_dssp CCCCTTCCHHHH------HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHH
T ss_pred CCCCCCCCHHHH------HHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHH
Confidence 499999999999 99999998 55544444444333 33444443333 345678999999999999999999
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+..|.+++.++...+.++..+.+.+.+.+. ++++++++++||||||.+++.+++++|+++|+++ ++++|+||+|.+
T Consensus 142 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~-~~~ii~De~Y~~ 220 (412)
T d1yaaa_ 142 ENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK-NHIALFDTAYQG 220 (412)
T ss_dssp HTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred HHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccC-CEEEeecceeee
Confidence 999999999999877888888888887774 4667889999999999999999999999999999 999999999999
Q ss_pred cccCCCCcccc-----ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHH-----------HhhhhccccCCCh
Q 018665 155 IIYAPATHTSF-----ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC-----------NKIQSQFTSGASS 218 (352)
Q Consensus 155 ~~~~~~~~~~~-----~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~-----------~~~~~~~~~~~~~ 218 (352)
+.+++....+. .......++++++.|+||.++++|+|+||++++++.++.+ .........+++.
T Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (412)
T d1yaaa_ 221 FATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPA 300 (412)
T ss_dssp TSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCH
T ss_pred cccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 98876433332 2223346788999999999999999999999876533221 1222344567889
Q ss_pred HHHHHHHHHhcccCC---ChHHHHHHHHHHHHHHHHHHHHhccc--C-CceecCCCCceEEEeecCCccCCcccCCCCCC
Q 018665 219 ISQKAGVAALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGEL--E-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 292 (352)
Q Consensus 219 ~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~--~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 292 (352)
+.|.++..++.+... ..++++..++.++++++.+.+.|+++ + .+.++.+++|+|+|+.+
T Consensus 301 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~l--------------- 365 (412)
T d1yaaa_ 301 YGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--------------- 365 (412)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC---------------
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCc---------------
Confidence 999999988886321 13446777788999999999999876 1 16677889999998754
Q ss_pred ChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHhhh
Q 018665 293 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 293 ~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~ 346 (352)
..+++++|++++||.+.||+ ||+++. +++.++++.++|.++++.+
T Consensus 366 -s~e~~~~L~~e~~V~~~~g~--------Ris~~g~~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 366 -TPQMVKRLEETHAVYLVASG--------RASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp -CHHHHHHHHHHHCEECCTTS--------EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHhCCEEECCCC--------EEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 33567888888999998875 999986 8899999999999998764
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=1.5e-37 Score=283.10 Aligned_cols=314 Identities=16% Similarity=0.144 Sum_probs=243.0
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcE--EEeCChHHHHHHHHHH-------hcCCCCEEEecCCCCCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQI--LVSNGAKQSILQAVLA-------VCSPGDEVIIPAPFWVS 72 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i--~~~~g~~~a~~~~~~~-------l~~~~~~vl~~~~~~~~ 72 (352)
.|+|..|.+++| +++++++. +++..++.+++ ..+.+++.++..+... +.++||.|++++|+|..
T Consensus 69 ~Y~p~~G~p~lr------eaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~ 142 (412)
T d1ajsa_ 69 EYLPILGLAEFR------TCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN 142 (412)
T ss_dssp CCCCTTCCHHHH------HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTH
T ss_pred CCCCCCCCHHHH------HHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchh
Confidence 499999999999 99999998 66666666654 4556666555544433 36899999999999999
Q ss_pred hHHHHHhcCCeEEEe-cccCCCCcccCHHHHHhhc---cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEe
Q 018665 73 YPEMARIADATPVIL-PTRISENFLLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 148 (352)
Q Consensus 73 ~~~~~~~~g~~v~~i-~~~~~~~~~~d~~~l~~~l---~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~liv 148 (352)
|...++..|.+.+.+ +..++..+..|.+.+++.+ .++++++++++||||||.+++.+++++|+++|+++ |+++|.
T Consensus 143 y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~-~~~ii~ 221 (412)
T d1ajsa_ 143 HNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR-FLFPFF 221 (412)
T ss_dssp HHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEE
T ss_pred hHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhC-CEEEEe
Confidence 999999999876544 4444556678888776654 46788899999999999999999999999999999 999999
Q ss_pred cccccccccCCCCccc--cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHh-------hhhccccCCChH
Q 018665 149 DEIYEHIIYAPATHTS--FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK-------IQSQFTSGASSI 219 (352)
Q Consensus 149 D~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~-------~~~~~~~~~~~~ 219 (352)
||+|.++.+++....+ ........++.+++.|+||.++++|+|+||++++...++.+.+ .......+++..
T Consensus 222 De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (412)
T d1ajsa_ 222 DSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQ 301 (412)
T ss_dssp EESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSH
T ss_pred cHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchH
Confidence 9999999887643222 2222233567899999999999999999999987655444332 223344567888
Q ss_pred HHHHHHHHhcccCC---ChHHHHHHHHHHHHHHHHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCC
Q 018665 220 SQKAGVAALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 293 (352)
Q Consensus 220 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
.+.++...+.+... ...+++..+++++++++.+.+.|+++. .+.++.+++|+|.|+.+ +
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~l---------------s 366 (412)
T d1ajsa_ 302 GARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL---------------N 366 (412)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC---------------C
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCC---------------C
Confidence 88888888765211 134466778889999999999998762 25666788999888653 2
Q ss_pred hHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHHhhhC
Q 018665 294 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 294 ~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
.+.+++|++++||.+.||+ ||+++. +++++++++++|.+++++++
T Consensus 367 -~~~v~~L~~e~gV~~vpg~--------Ri~~ag~~~~~i~~~a~aI~~av~~~~ 412 (412)
T d1ajsa_ 367 -PKQVEYLINQKHIYLLPSG--------RINMCGLTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp -HHHHHHHHHTTCEECCTTS--------EEEGGGCCTTTHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHhCCEEEeCCC--------eEEeccCCHHHHHHHHHHHHHHHHhcC
Confidence 3556778888899999985 999986 88999999999999998764
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5e-37 Score=278.32 Aligned_cols=310 Identities=15% Similarity=0.112 Sum_probs=242.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcE--EEeCChHHHHHHHHH--HhcCCCCEEEecCCCCCChHHHH
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQI--LVSNGAKQSILQAVL--AVCSPGDEVIIPAPFWVSYPEMA 77 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i--~~~~g~~~a~~~~~~--~l~~~~~~vl~~~~~~~~~~~~~ 77 (352)
.|+|..|.+++| +++++++. +++....++.+ ..+.+++.++..+.. ...++||.|++++|+|..|...+
T Consensus 64 ~Y~p~~G~~~lR------~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~ 137 (396)
T d2q7wa1 64 NYLGIDGIPEFG------RCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVF 137 (396)
T ss_dssp CCCCTTCCHHHH------HHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHH
T ss_pred CCCCCcCCHHHH------HHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHH
Confidence 499999999999 99999998 66655555543 455666655554443 44789999999999999999999
Q ss_pred HhcCCeEEEecccCCCCcccCHHHHHhhc---cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 78 RIADATPVILPTRISENFLLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 78 ~~~g~~v~~i~~~~~~~~~~d~~~l~~~l---~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+..|.+++.++...+.++..+.+++.+.. .++++++++++||||||.+++.+++++|+++|+++ ++++|+||+|.+
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~-~~~ii~De~Y~~ 216 (396)
T d2q7wa1 138 NSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK-GWLPLFDFAYQG 216 (396)
T ss_dssp HHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTT
T ss_pred HHcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcC-CeEEEEeccccc
Confidence 99999999999988777777776666644 45778889999999999999999999999999999 999999999999
Q ss_pred cccCCCCcccc-ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh-------hccccCCChHHHHHHHH
Q 018665 155 IIYAPATHTSF-ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------SQFTSGASSISQKAGVA 226 (352)
Q Consensus 155 ~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 226 (352)
+.+++....+. .......++.+++.|+||.++++|+|+||++++...++...... .....+++...|.++..
T Consensus 217 l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 296 (396)
T d2q7wa1 217 FARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVAT 296 (396)
T ss_dssp SSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred cccCCccCchHhhhhhhhcccccccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHH
Confidence 98865433322 22222356788999999999999999999999877666544322 23335677778888777
Q ss_pred HhcccCC---ChHHHHHHHHHHHHHHHHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHH
Q 018665 227 ALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 300 (352)
Q Consensus 227 ~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
++..... ..+++++.+++++++++.+.+.|+++. .+.++.+++|+|.|+.++ .+++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~----------------~e~~~~ 360 (396)
T d2q7wa1 297 ILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----------------KEQVLR 360 (396)
T ss_dssp HHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----------------HHHHHH
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCC----------------HHHHHH
Confidence 7765211 135566777889999999999998861 156667889999987642 355788
Q ss_pred HHHccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHHH
Q 018665 301 LLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGL 343 (352)
Q Consensus 301 l~~~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~~ 343 (352)
|++++||.+.||+ |||++. +++++++++++|++++
T Consensus 361 L~~e~gV~~~~g~--------Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 361 LREEFGVYAVASG--------RVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHCEECCTTC--------EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHhCCEEECCCC--------EEEecCCCHHHHHHHHHHHHHhC
Confidence 8888899999876 999987 8899999999998864
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=4.8e-36 Score=270.99 Aligned_cols=299 Identities=14% Similarity=0.169 Sum_probs=231.5
Q ss_pred CCccCCCCC---ChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHh--------cCCCCEEEecCC
Q 018665 1 MQFVRVSQG---TLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAV--------CSPGDEVIIPAP 68 (352)
Q Consensus 1 ~~~y~~~~~---~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l--------~~~~~~vl~~~~ 68 (352)
|+|+..+.. .++|+ +.|++++. .-+...+..+|++++|+++++..++.+| ..++++|+++.|
T Consensus 90 ~sy~~~~~~~~~~~~L~------~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P 163 (425)
T d2hoxa1 90 MSYFFNPVSNFISFELE------KTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAP 163 (425)
T ss_dssp CSSSCSSCCTTCCHHHH------HHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSS
T ss_pred cceecCCccccCCHHHH------HHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecC
Confidence 455544332 26888 99999999 5555566678999999999999999998 467899999999
Q ss_pred CCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEe
Q 018665 69 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 148 (352)
Q Consensus 69 ~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~liv 148 (352)
+|..|....+..+.+.. +|.+|.+.++++++++++++++++||||||.+.. +... ++.+|.
T Consensus 164 ~y~~Y~~~~~~~~~~~~--------~~~~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~----------~v~~-~~~~I~ 224 (425)
T d2hoxa1 164 FYPVFREQTKYFDKKGY--------VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH----------AVIK-GCKSIY 224 (425)
T ss_dssp CCHHHHHHHHHSCBTTE--------EEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC----------CSST-TCEEEE
T ss_pred ccccHHHHHHHcCCCCC--------ccCCCHHHHHhhCCCCceEEEEECCCCCCcchhh----------hhhh-CCEEEE
Confidence 99999998888776543 3456888899989899999999999999998742 1246 899999
Q ss_pred cccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHH
Q 018665 149 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAA 227 (352)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
||+|.+..+ ..+....++++++.|+||.+|++|+|+||+++ ++.+++++.......+.+++.+.|.++.++
T Consensus 225 DEaY~~~~f--------~~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~a 296 (425)
T d2hoxa1 225 DMVYYWPHY--------TPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKV 296 (425)
T ss_dssp ECTTCSTTT--------SCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred eccccCccc--------cchhhhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHH
Confidence 999964322 22333467889999999999999999999765 566778888887777888999999999888
Q ss_pred hccc--------CCChHHHHHHHHHHHHHHHHHHHHhcccCCceec--------------CCCCceEEEeecCCccCCcc
Q 018665 228 LGLG--------YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS--------------EPQGAFYLFIDFSTYYGSEA 285 (352)
Q Consensus 228 l~~~--------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~--------------~~~~g~~~~~~~~~~~~~~~ 285 (352)
++.. ....+.++..++.++++++.+.+.|++.+.+.+. .+..+.|.|+++...
T Consensus 297 L~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~----- 371 (425)
T d2hoxa1 297 LKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----- 371 (425)
T ss_dssp HHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG-----
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC-----
Confidence 8641 0123567777888999999999999876433221 233344577776542
Q ss_pred cCCCCCCChHHHHHHHHHccCEEeccCCCCCC-CCeEEEEeecCHHHHHHHHHHHHHHHhh
Q 018665 286 EGFGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~-~~~iRi~~~~~~~~l~~~~~~l~~~~~~ 345 (352)
..+.+.++++++||.+.||+.|+. ++++|||+..++|++++++++|++++++
T Consensus 372 --------~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~~~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 372 --------EDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp --------GGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred --------hHHHHHHHHHhCCEEEEechhcCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 222334455567999999999974 6899999999999999999999999864
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=8.8e-36 Score=270.03 Aligned_cols=307 Identities=15% Similarity=0.097 Sum_probs=235.2
Q ss_pred cCCCCCChhhhccchhhHHHHHHHH-hcCCCCCCCcEEEeCChHHH--HHHHHHHhcCCCCEEEecCCCCCChHHHHHhc
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLK-ENGLSYTPDQILVSNGAKQS--ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA 80 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~-~~~~~~~~~~i~~~~g~~~a--~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~ 80 (352)
|+|..|.+++| +++++++. +.+.....+.+ ++.+++++ +...+..+.+++|.|++++|+|..|...++..
T Consensus 65 Y~p~~G~~~lr------~aia~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~ 137 (394)
T d2ay1a_ 65 YAGLSGEPEFQ------KAMGELILGDGLKSETTATL-ATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFM 137 (394)
T ss_dssp CCCSSCCHHHH------HHHHHHHHGGGCCGGGEEEE-EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHH
T ss_pred CCCCCCCHHHH------HHHHHHHhccccccccccce-eccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHc
Confidence 99999999999 99999998 44443333444 44444433 55555667889999999999999999999999
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhc---cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc
Q 018665 81 DATPVILPTRISENFLLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 157 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l---~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~ 157 (352)
|.+++.++...+.++..+.+.+++.. .++++++++++||||||.+++.+++++|+++|+++ ++++|.||+|.++.+
T Consensus 138 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~-~~~ii~De~Y~~l~~ 216 (394)
T d2ay1a_ 138 GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT-GALPLIDLAYQGFGD 216 (394)
T ss_dssp TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEECCTTSSS
T ss_pred CCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcc-eEEEEEeccchhhcc
Confidence 99999999887666666766665544 45677888899999999999999999999999999 999999999999988
Q ss_pred CCCCccccccC-CCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh-------hhccccCCChHHHHHHHHHhc
Q 018665 158 APATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALG 229 (352)
Q Consensus 158 ~~~~~~~~~~~-~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~ 229 (352)
++....+.... .....+.+++.|+||.++++|+|+||++++...++..... .......++...+..+...+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (394)
T d2ay1a_ 217 GLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLT 296 (394)
T ss_dssp CHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHH
T ss_pred cccccchhhhhhhhhcccccccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcC
Confidence 75433332221 1123567889999999999999999999877655544322 223334567777777777776
Q ss_pred ccCC---ChHHHHHHHHHHHHHHHHHHHHhcccC---CceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHH
Q 018665 230 LGYA---GGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 303 (352)
Q Consensus 230 ~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (352)
+... ..+.++..+++++++++.+.+.|+++. .+.++.+++|+|+|+.+ +.+++++|++
T Consensus 297 ~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l----------------s~~~~~~L~~ 360 (394)
T d2ay1a_ 297 TPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGA----------------TPEQVKRIKE 360 (394)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCC----------------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCceeEEecCc----------------CHHHHHHHHH
Confidence 5221 134456677788888999999998762 26777889999999864 2356688888
Q ss_pred ccCEEeccCCCCCCCCeEEEEeec-CHHHHHHHHHHHHHH
Q 018665 304 KAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKG 342 (352)
Q Consensus 304 ~~gi~i~~g~~~~~~~~iRi~~~~-~~~~l~~~~~~l~~~ 342 (352)
++||.+.||. |||++. ++++++++.++|.++
T Consensus 361 ~~~V~~~~g~--------Ri~~a~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 361 EFGIYMVGDS--------RINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHCEECCTTC--------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred hCCEEecCCC--------EEEecCCCHHHHHHHHHHHHHh
Confidence 8899999975 999987 889999988888775
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.97 E-value=8.3e-29 Score=222.91 Aligned_cols=288 Identities=19% Similarity=0.197 Sum_probs=214.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHH----HHHhcCCeEEEecccCCCCc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENF 95 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~----~~~~~g~~v~~i~~~~~~~~ 95 (352)
+.+|++++ +++++|++|+|+|++++.++.++ .++|++|+++++.|.+... ..+..|+++..+|.+.....
T Consensus 57 ~~la~~~~-----~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~ 131 (381)
T d1elua_ 57 QALAETFN-----VDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQ 131 (381)
T ss_dssp HHHHHHTT-----SCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSS
T ss_pred HHHHHHhC-----CCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeecccccccccccccccccccccccc
Confidence 77888886 77899999999999999999987 6789999999999986554 44567999999998754443
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhC---CCEEEEecccccccccCCCCccccccCCCCC
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH---PRLLVLSDEIYEHIIYAPATHTSFASLPGMW 172 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~---~~~~livD~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
..+.+.+++.++++++++++++++|+||...| +++|.++|+++ +++++++|.+++. +..+..+.. .
T Consensus 132 ~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~---~~~I~~l~~~~~~~~~~~~~vD~~~~~----g~~~~~~~~----~ 200 (381)
T d1elua_ 132 GDAAAVLANHLGPKTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSA----GSLPLDFSR----L 200 (381)
T ss_dssp SCHHHHHHTTCCTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTB----TTBCCCTTT----S
T ss_pred chHHHHHHhhhcccccccccccccccccccch---hhHHHHHHhhccccccccccccccccc----ccccccccc----c
Confidence 34467788889999999999999999999999 78888888773 2699999999875 332333332 2
Q ss_pred CceEEEeccccccccccceeEEEEcChhHHHHHHhh----------------------hhccccCCChHHHHHHHHHhcc
Q 018665 173 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI----------------------QSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 173 ~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
+.++++.|++|+++ ++.++|++..+++..+.+... ......+++.....++.++++.
T Consensus 201 ~~D~~~~s~~K~~~-~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~ 279 (381)
T d1elua_ 201 EVDYYAFTGHKWFA-GPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQL 279 (381)
T ss_dssp CCSEEEEESSSTTC-CCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred cccccccccccccc-ccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhh
Confidence 45599999999997 445789998888776654211 1112235666666666676654
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC---CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCE
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE---PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 307 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 307 (352)
... ....+...++.+++++++.+.|++++++.++. +.+++ +.+.+++.. ..+.+.+.|.++ ||
T Consensus 280 ~~~-~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-vsf~~~~~~-----------~~~~i~~~L~~~-gi 345 (381)
T d1elua_ 280 HQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGL-VSFTVDSPL-----------GHRAIVQKLEEQ-RI 345 (381)
T ss_dssp HHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSE-EEEEECSSS-----------CHHHHHHHHHHT-TE
T ss_pred HHH-hcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccE-EEEEcCCCC-----------CHHHHHHHHHhC-Cc
Confidence 110 11234556778888899999999998988874 34454 445554431 667888887765 89
Q ss_pred EeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 308 ALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
.+.. ++.++++|+|++. +++|++++++.|+++
T Consensus 346 ~v~~---~~~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 346 YLRT---IADPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp ECEE---ETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred EEEe---cCCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 8754 3457899999987 889999999999864
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=8.3e-29 Score=221.13 Aligned_cols=286 Identities=15% Similarity=0.099 Sum_probs=202.1
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEec-CCCCCChHHHHHhcCCeE
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP-APFWVSYPEMARIADATP 84 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~-~~~~~~~~~~~~~~g~~v 84 (352)
+..+.++++ +..+++++ . ...+++++++|+++|+..++.++..+++.|+++ .|+|.++...++..|.++
T Consensus 48 ~~~~~~~l~------~~~~~~~~---~-~~~e~~~~~~~~~~a~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~ 117 (366)
T d2aeua1 48 SSYFAEKVN------EYGLKHLG---G-DENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSCKIVNAKY 117 (366)
T ss_dssp HHHHHHHHH------HHHHHHHT---C-CTTEEEEEESSHHHHHHHHHHHHCCSEEEEECSSSSCCTHHHHHHHHTTCEE
T ss_pred chhhHHHHH------HHHHHHcc---C-CCccEEEEeCCHHHHHHHHHHHhCCCCEEEEecCCCcchhHHHHHHhcCCeE
Confidence 333445566 66666665 1 134789999999999999999987655545554 589999999999999875
Q ss_pred EEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 85 VILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 85 ~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
+ +. -|+++|++++++++++|++++|+||+ ..+.+++++|+++|+++ |+++|+||+|+...+.....++
T Consensus 118 v--~~-------~d~e~l~~~i~~~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~-~~~~i~De~y~~~~~~~~~~~~ 185 (366)
T d2aeua1 118 F--ES-------DKVGEILNKIDKDTLVIITGSTMDLK--VIELENFKKVINTAKNK-EAIVFVDDASGARVRLLFNQPP 185 (366)
T ss_dssp E--EE-------SCHHHHHTTCCTTEEEEEECBCTTSC--BCCHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHTTCCC
T ss_pred E--CC-------CCHHHHHHhcCCCceEEEEEecCCCC--cCCHHHHHHHHHHhccC-cEEEEEecCccccccccccCCC
Confidence 4 32 17999999999999999999999875 35667799999999999 9999999999876554333333
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
... .+.++++.|+||.+ +|+|+||+++++++++.+.......+.+++++.+.++.++++.- ....+++..+.
T Consensus 186 ~~~----~~~di~~~S~sK~~--~g~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl--~~~r~~~~~~~ 257 (366)
T d2aeua1 186 ALK----LGADLVVTSTDKLM--EGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNF--NLERIRKAFER 257 (366)
T ss_dssp HHH----HTCSEEEEETTSSS--SSCSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHC--CHHHHHHHHHH
T ss_pred Hhh----cCceEEEecccccc--cccceeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhc--cHHHHHHHHHH
Confidence 222 23448999999976 57899999999999999998887777888999999988888651 12222322222
Q ss_pred HHH----HHHHHHHHhcccCCce--ecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC-CC
Q 018665 245 FRE----RRDFLVKSFGELEGVK--MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GD 317 (352)
Q Consensus 245 ~~~----~~~~l~~~l~~~~g~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~-~~ 317 (352)
.++ ..+.+.......++.. ...+.+.++++.......... ..+..+++..|++++||.+.|+..+ +.
T Consensus 258 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~a~~Ll~~~gV~~ip~~~~p~~ 331 (366)
T d2aeua1 258 AKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTIN------IKKLIEIGFNLLKNYGIITITVAGMPGA 331 (366)
T ss_dssp HHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHH------HHHHHHHHHHHHHHHCEECSTTSSSCSS
T ss_pred HHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceeec------ccCHHHHHHHHHHhCCEEEEECCCCCCC
Confidence 222 2233333333333322 223455666666544321100 0135678889998899999998776 45
Q ss_pred CCeEEEEeec
Q 018665 318 DTCIRISYAA 327 (352)
Q Consensus 318 ~~~iRi~~~~ 327 (352)
.+++|+|++.
T Consensus 332 ~~~lRis~~~ 341 (366)
T d2aeua1 332 SKSLRIDLTS 341 (366)
T ss_dssp CCSEEEETTS
T ss_pred CCEEEEeccc
Confidence 6799999987
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=8.6e-28 Score=216.91 Aligned_cols=289 Identities=17% Similarity=0.176 Sum_probs=210.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh----cCCCCEEEecCCCCCChHHHH---HhcCCeEEEecccCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV----CSPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISE 93 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l----~~~~~~vl~~~~~~~~~~~~~---~~~g~~v~~i~~~~~~ 93 (352)
+.+|++++ +++++|++++|+|++++.++.++ .++||+|++.++.|.++...+ +..|.++..++.+.
T Consensus 55 ~~iA~~lg-----~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-- 127 (391)
T d1p3wa_ 55 NQIADLVG-----ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-- 127 (391)
T ss_dssp HHHHHHHT-----CCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--
T ss_pred HHHHHHcC-----CCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCC--
Confidence 88999998 78899999999999999888764 478999999999999876544 46799999999873
Q ss_pred CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 94 ~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
++.+|++++++++++++++|++++++||||..+| +++|+++|+++ |+++++|++++. +..+..+... +
T Consensus 128 ~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~---~~~I~~~~~~~-~~~~ivD~~~~~----g~~~~d~~~~----~ 195 (391)
T d1p3wa_ 128 NGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQD---IAAIGEMCRAR-GIIYHVDATQSV----GKLPIDLSQL----K 195 (391)
T ss_dssp TSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCC---HHHHHHHHHHH-TCEEEEECTTTB----TTBCCCTTTS----C
T ss_pred CCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECC---HHHHHHHhccC-CcEEEEeecccc----CCccccchhc----c
Confidence 4458999999999999999999999999999999 88999999999 999999999875 2223333332 3
Q ss_pred ceEEEeccccccccccceeEEEEcChhHHHHHHhhh-------hccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 246 (352)
.++++.|.+|++|.+| +|+++.+++.+....... .......+.....++...+.. ..+......++++
T Consensus 196 ~D~~~~s~~k~~g~~g--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~ 270 (391)
T d1p3wa_ 196 VDLMSFSGHKIYGPKG--IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMATEMERLR 270 (391)
T ss_dssp CSEEEEESTTTTSCSS--CEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred ccccccccccccCCCc--eEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhH---HHHHhhHHHHHHH
Confidence 4488899999986444 688877776544432111 122233444444444444433 1334455566777
Q ss_pred HHHHHHHHHhcccCCceecCC---CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC------
Q 018665 247 ERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------ 317 (352)
Q Consensus 247 ~~~~~l~~~l~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~------ 317 (352)
+++..+.+.|..+++..+... .....+.+..+.. ....+...|. ++.+..|..|..
T Consensus 271 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~---~i~v~~G~~c~~~~~~~~ 335 (391)
T d1p3wa_ 271 GLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV------------EGESLIMALK---DLAVSSGSACTSASLEPS 335 (391)
T ss_dssp HHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTS------------CHHHHHHHTT---TEECBCCCC------CCC
T ss_pred HHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCC------------ChHHHHHHhC---CCEEEccccccCCccchh
Confidence 788888899988766544322 1233344445543 6777776653 577776654421
Q ss_pred -------------CCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 318 -------------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 318 -------------~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
++++|+|++. |++|++++++.|++++++++.
T Consensus 336 ~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~ 381 (391)
T d1p3wa_ 336 YVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 381 (391)
T ss_dssp HHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2479999998 899999999999999998765
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=2.5e-28 Score=218.33 Aligned_cols=295 Identities=15% Similarity=0.186 Sum_probs=201.8
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 100 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~ 100 (352)
+.+|++++ .+++++|+|+++|+..++.+++++||+|+++.++|.+....++..|.+++.+|.++..++.+|++
T Consensus 54 ~~~A~~~g-------~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~ 126 (364)
T d2e7ja1 54 NQLPKFLG-------CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPE 126 (364)
T ss_dssp THHHHHTT-------SSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHH
T ss_pred HHHHHHhC-------cCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhccceEEEeeeccccccccCHH
Confidence 88999874 57899999999999999999999999999999999999999999999999999987777889999
Q ss_pred HHHhhccC-----CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 101 VLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 101 ~l~~~l~~-----~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
++++.+++ ++++|++++|+||+|.+.| +++|+++|+++ |+++++|++|+.. ..+...... +.+
T Consensus 127 ~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~-~i~livD~a~~~g----~~~~~~~~~----g~D 194 (364)
T d2e7ja1 127 NFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEY-DVPLLVNGAYAIG----RMPVSLKEI----GAD 194 (364)
T ss_dssp HHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTTBT----TBCCCHHHH----TCS
T ss_pred HHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccc-cchhhccccchhh----hhhhccccc----ccc
Confidence 99999853 4568889999999999999 99999999999 9999999999752 222333332 234
Q ss_pred EEEeccccccccccceeEEEEcChhHHHHHHhhhhcc--------ccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 247 (352)
Q Consensus 176 i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 247 (352)
++++|++|.+|.+| ++|+++.++++++.+......+ ....+.....++.+.++. ..+.++...+.+ +
T Consensus 195 ~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~-~ 269 (364)
T d2e7ja1 195 FIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH---VRERIKRWDEEV-E 269 (364)
T ss_dssp EEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH---HHHHGGGHHHHH-H
T ss_pred eeeeccccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHH---HHHHHHHHHHHH-H
Confidence 89999999998555 7999999988776653322111 112233333444444432 122222333333 3
Q ss_pred HHHHHHHHhcccCCceecC--CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEe
Q 018665 248 RRDFLVKSFGELEGVKMSE--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 325 (352)
Q Consensus 248 ~~~~l~~~l~~~~g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~ 325 (352)
+.+++.+.|+++ |+.... +......+...+.......... .....+...+..+ ++.... .+....+|++.
T Consensus 270 ~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~---~g~~~~~~~~~ 341 (364)
T d2e7ja1 270 KARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAEVLYEISKKAK---GGRFFLYRELKSR-KIHGIK---PGLTRYFKLST 341 (364)
T ss_dssp HHHHHHHHHHHT-TCEEESSSSCCSSEEEEECHHHHHHHHHSS---SGGGHHHHHHHHT-TEECSC---TTCCSEEEEEC
T ss_pred HHHHHHHHHHHc-CCeecCCCCCCcceEEEeccchHHHHHHhh---ccchHHHHHHHhc-CCceec---CCCcceEEEec
Confidence 455677778777 655542 2222223333322100000000 0122333444443 664322 23356778775
Q ss_pred ec-CHHHHHHHHHHHHHHHhhhC
Q 018665 326 AA-SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 326 ~~-~~~~l~~~~~~l~~~~~~~~ 347 (352)
.. ++||+++++++|+++++++.
T Consensus 342 ~~~t~edid~~~~~l~ei~~~ys 364 (364)
T d2e7ja1 342 YGLSDEEVDYVLNAFKEIIEKYS 364 (364)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhC
Confidence 44 89999999999999998863
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.8e-27 Score=213.27 Aligned_cols=290 Identities=15% Similarity=0.124 Sum_probs=225.1
Q ss_pred HHHHHHHHhcCCCCC-CCcEEEeCChHHHHHHHHHH----hcCCCCEEEecCCCCCChHHHH----HhcCCeEEEecccC
Q 018665 21 QQFVINLKENGLSYT-PDQILVSNGAKQSILQAVLA----VCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRI 91 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~----l~~~~~~vl~~~~~~~~~~~~~----~~~g~~v~~i~~~~ 91 (352)
+.+|++++ .. +++|++++|+|++++.++.. ..++|++|++.+..|++....+ +..|++++.+|++.
T Consensus 73 ~~ia~~l~-----~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~ 147 (405)
T d1jf9a_ 73 KRASLFIN-----ARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP 147 (405)
T ss_dssp HHHHHHTT-----CSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT
T ss_pred HHHHHHcC-----CCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCC
Confidence 88888886 43 47999999999999988876 3578899999999999866444 56799999999975
Q ss_pred CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
+ ..+|++.++++++++++++++++.+|.+|..+| +++|.++|+++ |+++++|.+++. |..+..+...
T Consensus 148 ~--g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~p---i~~i~~~~~~~-g~~~~vD~~q~~----g~~~id~~~~--- 214 (405)
T d1jf9a_ 148 D--GTLQLETLPTLFDEKTRLLAITHVSNVLGTENP---LAEMITLAHQH-GAKVLVDGAQAV----MHHPVDVQAL--- 214 (405)
T ss_dssp T--SCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTTT----TTSCCCHHHH---
T ss_pred C--CcCCHHHHHHhccCCcEEEEEecCCCcccccCc---hHHhhhHHHHc-CCeeecccceec----cccccchhhc---
Confidence 4 458999999999999999999999999999999 99999999999 999999999875 3333444443
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHHHHHhh----------------------hhccccCCChHHHHHHHHHhc
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI----------------------QSQFTSGASSISQKAGVAALG 229 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~ 229 (352)
+.++++.|.+|++|.. ++|+++.++++++.+... .+...++++.....++.++++
T Consensus 215 -~~D~~~~s~hK~~Gp~--G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~ 291 (405)
T d1jf9a_ 215 -DCDFYVFSGHKLYGPT--GIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALE 291 (405)
T ss_dssp -TCSEEEEEGGGTTSCS--SCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHH
T ss_pred -CCceeeccccccccCC--CceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHH
Confidence 3349999999998644 478999998877654211 112235678888888888876
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC-CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE
Q 018665 230 LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308 (352)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 308 (352)
.. .....+.+.++...+.+++.+.++..+.+....+. .+..+.+.+++. ++.++...|.+ .||.
T Consensus 292 ~~--~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~------------~~~~~~~~L~~-~gI~ 356 (405)
T d1jf9a_ 292 YV--SALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH------------HAYDVGSFLDN-YGIA 356 (405)
T ss_dssp HH--HHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTC------------CHHHHHHHHHH-TTEE
T ss_pred HH--HHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCC------------CHHHHHHHHHH-CCcE
Confidence 41 12346677777788888889999988666665443 233355666654 77888887764 5999
Q ss_pred eccCCCCC--------CCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 309 LVPGDAFG--------DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 309 i~~g~~~~--------~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+..|+.|. .++++|+|++. +++|++++++.|+++++-+
T Consensus 357 v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 357 VRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp CEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 98887663 36789999998 8899999999999998754
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.95 E-value=1.6e-25 Score=202.69 Aligned_cols=290 Identities=16% Similarity=0.152 Sum_probs=224.8
Q ss_pred HHHHHHHHhcCCCCC-CCcEEEeCChHHHHHHHHHH----hcCCCCEEEecCCCCCChHHHH----HhcCCeEEEecccC
Q 018665 21 QQFVINLKENGLSYT-PDQILVSNGAKQSILQAVLA----VCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRI 91 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~----l~~~~~~vl~~~~~~~~~~~~~----~~~g~~v~~i~~~~ 91 (352)
+.++++++ .+ ++.++++++++++++.++.. -.++|++|++.+-.|++....+ +..|.++..++.+.
T Consensus 73 ~~ia~llg-----a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~ 147 (408)
T d1t3ia_ 73 NKVAKFIN-----ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE 147 (408)
T ss_dssp HHHHHHTT-----CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT
T ss_pred HHHHHHhC-----CCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccc
Confidence 88888886 55 47899999999999888765 3568999999999998766544 56799999999874
Q ss_pred CCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 92 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
+...+.+.+++.+++++++|++++.+|.+|..+| +++|.++|+++ |+++++|.+++. |..+..+...
T Consensus 148 --~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p---~~~i~~~~~~~-g~~~ivDa~q~~----g~~~id~~~~--- 214 (408)
T d1t3ia_ 148 --QESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNP---AEEIAQLAHQA-GAKVLVDACQSA----PHYPLDVQLI--- 214 (408)
T ss_dssp --TSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHT-TCEEEEECTTTT----TTSCCCHHHH---
T ss_pred --cccccHHHhhhccCCCceEEEEecccccccccCc---HHHHhhhhhcc-Cceeeeccceec----cccccccccc---
Confidence 3347999999999999999999999999999999 89999999999 999999999875 4444444443
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHHHHHHhh---------------------hhccccCCChHHHHHHHHHhcc
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI---------------------QSQFTSGASSISQKAGVAALGL 230 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~ 230 (352)
+.++++.|.+|++|. .++|+++.+++........ .+...++++.....++.++++.
T Consensus 215 -~~D~~~~s~hK~~gp--~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~ 291 (408)
T d1t3ia_ 215 -DCDWLVASGHKMCAP--TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDY 291 (408)
T ss_dssp -TCSEEEEEGGGTTSC--TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHH
T ss_pred -CCceEEeccccccCC--CCccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHH
Confidence 334999999998763 3589999999887654311 1122456777777777777764
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCC-----CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHcc
Q 018665 231 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 305 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (352)
. .....+++.++..++.+++.+.+++.+++.++.+. .+..+.+.++.. ++.++.+.|. +.
T Consensus 292 ~--~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~------------~~~~v~~~L~-~~ 356 (408)
T d1t3ia_ 292 L--TDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL------------HASDVATMVD-QD 356 (408)
T ss_dssp H--HHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB------------CHHHHHHHHH-TT
T ss_pred H--HHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCC------------CHHHHHHHHh-hC
Confidence 1 12345677778888888999999988887776322 233455566654 7888888876 45
Q ss_pred CEEeccCCCCC--------CCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 306 QVALVPGDAFG--------DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 306 gi~i~~g~~~~--------~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
||.+..|+.|. .++++|+|++. +++|++++++.|+++++.+
T Consensus 357 gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 357 GIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp TEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999887764 35789999998 8999999999999999865
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.94 E-value=2.4e-25 Score=198.17 Aligned_cols=294 Identities=16% Similarity=0.155 Sum_probs=218.0
Q ss_pred CCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh--cCCCCEEEecCCCCCChHHHHHhcCCeE
Q 018665 7 SQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATP 84 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l--~~~~~~vl~~~~~~~~~~~~~~~~g~~v 84 (352)
..-+.+++ +.+|++++ .+..++.+++..|+..++.++ .++++.|+...-.|.+....++..+.++
T Consensus 89 ~~~h~~LE------~~lA~~~g-------~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~ 155 (396)
T d2bwna1 89 TAYHRRLE------AEIAGLHQ-------KEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPK 155 (396)
T ss_dssp BHHHHHHH------HHHHHHTT-------CSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCE
T ss_pred chHHHHHH------HHHHHHhC-------CCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCc
Confidence 33345666 99999974 788899999999999999887 4678888889999999999999999999
Q ss_pred EEecccCCCCcccCHHHHHhhcc----CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 85 VILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 85 ~~i~~~~~~~~~~d~~~l~~~l~----~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
..++.+ |++.+++.++ .+.++|++....+.+|.+.| +++|.++|++| |+.+++||+|+...+...
T Consensus 156 ~~f~Hn-------d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap---l~~l~~L~~~y-~~~L~vDeAHs~Gv~G~~ 224 (396)
T d2bwna1 156 RIFRHN-------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP---IKEICDIAEEF-GALTYIDEVHAVGMYGPR 224 (396)
T ss_dssp EEECTT-------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSTT
T ss_pred eEeecc-------hHHHhhhHHhhhcccCceeEEEEeeccCcccccc---cHhHHHHhhhh-cceeeeccceeeeeeccc
Confidence 888743 5555555442 35567788888999999999 99999999999 999999999997666444
Q ss_pred CccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhc--cccCCChHHHHHHHHHhcccCCChHHH
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVV 238 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (352)
+.............+++++|++|++|..| |++.+++++++.+...... ++.++++....++.++++... .+..
T Consensus 225 G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~--~~~~ 299 (396)
T d2bwna1 225 GAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEG 299 (396)
T ss_dssp SCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHH
T ss_pred cccchhhcCCceeeeeeeecccccccccc---cccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhh--cchH
Confidence 33333222222456799999999998777 9999999999998766443 444555666666666555421 2334
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCC-
Q 018665 239 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD- 317 (352)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~- 317 (352)
++.+..+..+.+++++.+... |+.+... .+.++.+.+.+.. .+..++++|++++||.+.+.....-
T Consensus 300 ~~~r~~l~~~~~~~~~~l~~~-g~~~~~~-~spIvpv~ig~~~-----------~~~~~a~~lL~e~Gi~v~~i~~PtVp 366 (396)
T d2bwna1 300 QKLRDAQQMHAKVLKMRLKAL-GMPIIDH-GSHIVPVVIGDPV-----------HTKAVSDMLLSDYGVYVQPINFPTVP 366 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCCBCCC-SSSCEEEECCCHH-----------HHHHHHHHHHHHHCEECCEECTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCcCCC-CCCEEEEEeCCHH-----------HHHHHHHHHHHhCCEEEEEECCCcCC
Confidence 566777788888899999887 7776543 3344445554321 4667888877666999877554332
Q ss_pred --CCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 318 --DTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 318 --~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
...+|++++. +++||+++++.|+++
T Consensus 367 ~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 367 RGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp TTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 3579999987 999999999999874
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=4e-25 Score=198.71 Aligned_cols=289 Identities=16% Similarity=0.112 Sum_probs=218.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHH
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 100 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~ 100 (352)
+.+|+++ ..+.++++++++.|+..++.++.+++|.|++....|.++...+...+.++..++.. |++
T Consensus 97 ~~lA~~~-------g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~-------d~~ 162 (401)
T d1fc4a_ 97 QKLAAFL-------GMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN-------DMQ 162 (401)
T ss_dssp HHHHHHH-------TCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTT-------CHH
T ss_pred HHHHHhh-------cCCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCC-------ChH
Confidence 9999987 47889999999999999999999999999999999999999999999998887643 455
Q ss_pred HHHhhc---c---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 101 VLESKL---T---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 101 ~l~~~l---~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
.+++.+ + ....+|++....+..|...| ++++.++|++| |+++|+||+|+.+.+...............+.
T Consensus 163 ~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~---L~~l~~L~~~~-~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~ 238 (401)
T d1fc4a_ 163 ELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCDLADKY-DALVMVDDSHAVGFVGENGRGSHEYCDVMGRV 238 (401)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHT-TEEEEEECTTTTTTSSTTSCCHHHHTTCTTCC
T ss_pred HHHHHHHHhhhcccCceEEEEcCCCCCCCchhh---hhHHHHHHhhc-CcEEEehhhhccccccCCCCccchhccCCCCC
Confidence 555544 2 24456777777888899999 99999999999 99999999999877655433322222222345
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhhhh--ccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
+++++|++|.+| |...|++.++.++++.+..... .++.++++....++.++++. ....++++++++++.+++
T Consensus 239 dii~~tl~Ka~g--g~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~----~~~~~~~~~~l~~~~~~~ 312 (401)
T d1fc4a_ 239 DIITGTLGKALG--GASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM----VEAGSELRDRLWANARQF 312 (401)
T ss_dssp SEEEEESSSTTC--SSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHH
T ss_pred eEEEeecccccc--cCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcc----cccCHHHHHHHHHHHHHH
Confidence 689999999984 4446999999999998875432 34556677777777777764 333466788888899999
Q ss_pred HHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC---CCCeEEEEeec--
Q 018665 253 VKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAA-- 327 (352)
Q Consensus 253 ~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~---~~~~iRi~~~~-- 327 (352)
++.+... ++.+....+. ++.+.+.+.. .+..+.+.|+++ ||.+.+-.... ....+|++++.
T Consensus 313 ~~~l~~~-g~~~~~~~~p-Iv~v~~~~~~-----------~a~~~~~~L~~~-Gi~v~~i~~PtVp~g~~~lRi~~~a~h 378 (401)
T d1fc4a_ 313 REQMSAA-GFTLAGADHA-IIPVMLGDAV-----------VAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAH 378 (401)
T ss_dssp HHHHHHT-TCCBCCSSSS-EEEEEEECHH-----------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTC
T ss_pred Hhhhccc-CCccCCCCCC-EEEEEECCHH-----------HHHHHHHHHHHC-CceEEeECCCCCCCCCceEEEEECCCC
Confidence 9999887 6666544443 3444444321 466899999876 99987643322 12459999987
Q ss_pred CHHHHHHHHHHHHHHHhhhC
Q 018665 328 SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 328 ~~~~l~~~~~~l~~~~~~~~ 347 (352)
|+|||+++++.|+++.+++.
T Consensus 379 T~edId~~v~al~ev~~~lg 398 (401)
T d1fc4a_ 379 TPEQITRAVEAFTRIGKQLG 398 (401)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=4.3e-25 Score=197.46 Aligned_cols=292 Identities=12% Similarity=0.085 Sum_probs=217.7
Q ss_pred CCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCCeEE
Q 018665 6 VSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 85 (352)
Q Consensus 6 ~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~~v~ 85 (352)
.++-+.+++ +.+|++++ .+..++.++++.++..++.++.++++.|++....|.++...++..+.+++
T Consensus 81 ~~~~~~~lE------~~LA~~~g-------~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~ 147 (383)
T d1bs0a_ 81 YSVVHQALE------EELAEWLG-------YSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLR 147 (383)
T ss_dssp CCHHHHHHH------HHHHHHHT-------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEE
T ss_pred cchHHHHHH------HHHHHhcC-------CCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhccccCCCcce
Confidence 334445666 99999984 77889999999999999999999999999999999999999999999998
Q ss_pred EecccCCCCcccCHHHHHhhcc---CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCc
Q 018665 86 ILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 162 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~---~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~ 162 (352)
.++.. |++.+++.+. ++.++|+++.+++++|.+.| +++|.++|++| |+++++||+|+...+.....
T Consensus 148 ~~~hn-------d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~p---l~~l~~l~~~~-~~~livDeah~~gv~G~~g~ 216 (383)
T d1bs0a_ 148 RFAHN-------DVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP---LAEIQQVTQQH-NGWLMVDDAHGTGVIGEQGR 216 (383)
T ss_dssp EECTT-------CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTTTTTSSGGGC
T ss_pred Eecch-------HHHHHHHHhcccCCCceEEEecCCCCCCCcccc---hhHHHHHHHhc-CcEEEeecceeeeecCCccc
Confidence 88742 7777777763 46678888999999999999 89999999999 99999999999765543322
Q ss_pred cccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhh--ccccCCChHHHHHHHHHhcccCCChHHHHH
Q 018665 163 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGEVVSK 240 (352)
Q Consensus 163 ~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 240 (352)
....... ....+++.+++|.+|..| |++.++.+.++.++.... .++...++....++.++++.. .....+.
T Consensus 217 G~~~~~~--~~~~~~~~t~~ka~g~~G---g~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~--~~~~~~~ 289 (383)
T d1bs0a_ 217 GSCWLQK--VKPELLVVTFGKGFGVSG---AAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVI--RSDEGDA 289 (383)
T ss_dssp CHHHHTT--CCCSEEEEESSSTTSSCC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH--HSHHHHH
T ss_pred chHHHcC--Cccccccccccccccccc---cccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHH--HhhhhHH
Confidence 2212112 234477889999998666 999999999988875533 334445555555555565431 1234556
Q ss_pred HHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC---C
Q 018665 241 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---D 317 (352)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~---~ 317 (352)
.+.+..++..++.+.|.++ ++.+....+.+ +.+.+++.. .+.++.+.|+++ ||.+.+..... .
T Consensus 290 ~~~~l~~~~~~~~~~l~~~-g~~~~~~~s~I-i~v~~g~~~-----------~a~~~~~~L~~~-Gi~v~~~~~PtVp~g 355 (383)
T d1bs0a_ 290 RREKLAALITRFRAGVQDL-PFTLADSCSAI-QPLIVGDNS-----------RALQLAEKLRQQ-GCWVTAIRPPTVPAG 355 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SCEECSCCSSB-CCEEEESHH-----------HHHHHHHHHHHT-TEECCEECTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHHhc-CCccCCCCCCE-EEEEECCHH-----------HHHHHHHHHHHC-CceEEEEcCCCCCCC
Confidence 7778888999999999988 77665443333 333333221 466889999976 99987654322 1
Q ss_pred CCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 318 DTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 318 ~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
...+|++++. ++|||+++++.|+.+
T Consensus 356 ~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 356 TARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp CEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 3469999987 999999999999864
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.9e-25 Score=198.51 Aligned_cols=295 Identities=15% Similarity=0.161 Sum_probs=218.9
Q ss_pred HHHHHHHHhcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcCCeEEEecccCCCCccc
Q 018665 21 QQFVINLKENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLL 97 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i~~~~~~~~~~ 97 (352)
+.++++++ ++. ..|+++.|+|++++.++..++.+++++++....+.+.. ...+..+..+..++.+. ...+
T Consensus 59 ~~l~~llg-----~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 131 (388)
T d1h0ca_ 59 EGIQYVFQ-----TRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDP--GGHY 131 (388)
T ss_dssp HHHHHHHT-----CCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCT--TCCC
T ss_pred HHHHHHhC-----CCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeeccccccccccccccccCC--cccc
Confidence 78888886 443 36999999999999999999999999999988877554 34556677776666653 3457
Q ss_pred CHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 98 DPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 98 d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
|.+++++.+. .+++++++++.+|.||...| +++|.++|+++ |+++++|.+++. +..+..+.. .+.++
T Consensus 132 ~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~p---i~~i~~~~~~~-g~~~~vD~~qs~----g~~~~d~~~----~~~D~ 199 (388)
T d1h0ca_ 132 TLQEVEEGLAQHKPVLLFLTHGESSTGVLQP---LDGFGELCHRY-KCLLLVDSVASL----GGTPLYMDR----QGIDI 199 (388)
T ss_dssp CHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHTT-TCEEEEECTTTT----TTSCCCTTT----TTCSE
T ss_pred chHHHHHHhccCCcceEEEeeeeeccccccC---HHHHHHHhhcc-cccceecccccc----ccccccccc----cccce
Confidence 8888877664 48899999999999999999 99999999999 999999999875 222233332 34558
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHhh-----------------------hhccccCCChHHHHHHHHHhcccCC
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-----------------------QSQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
++.|.+|.++ +..++|+++.++..++.+... ...+..+++.....+..+++...
T Consensus 200 ~~~s~~K~~~-gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~-- 276 (388)
T d1h0ca_ 200 LYSGSQKALN-APPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALI-- 276 (388)
T ss_dssp EEEESSSTTC-CCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHH--
T ss_pred eccccccccc-CCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHH--
Confidence 9999999996 334678888888877765321 01223356666666666666541
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC----CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
....++...++.+++.+.+++.+... +.....+ +....+.+.+|+.. +..++.+.|.+++||.+
T Consensus 277 ~~~g~~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~rs~~i~~~~~p~~~-----------~~~~~~~~L~~~~gI~v 344 (388)
T d1h0ca_ 277 AEQGLENSWRQHREAAAYLHGRLQAL-GLQLFVKDPALRLPTVTTVAVPAGY-----------DWRDIVSYVIDHFDIEI 344 (388)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEEC
T ss_pred HHhccccccccccchhHHHHHHHhhc-CcccccCCHHHcCCeEEEEECCCCC-----------CHHHHHHHHHhcCCEEE
Confidence 13346677777788888888888876 5444322 22334567777653 78999999988889999
Q ss_pred ccCCCCCCCCeEEEE-eec--CHHHHHHHHHHHHHHHhhhCCC
Q 018665 310 VPGDAFGDDTCIRIS-YAA--SLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 310 ~~g~~~~~~~~iRi~-~~~--~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
..|..+..++.+||| ++. +.||++++++.|++++++++++
T Consensus 345 ~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~ 387 (388)
T d1h0ca_ 345 MGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKK 387 (388)
T ss_dssp EECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred eCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 988776667899999 654 7899999999999999998874
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=5e-24 Score=191.01 Aligned_cols=287 Identities=17% Similarity=0.161 Sum_probs=192.3
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHH----hcCCCCEEEecCCCCCChHHH---HHhcCCeEEEecccCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLA----VCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISE 93 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~----l~~~~~~vl~~~~~~~~~~~~---~~~~g~~v~~i~~~~~~ 93 (352)
+++|++++ +++++|++++|+|+++..++.+ ...+++.|++....|..+... ++..|.+++.+|++.
T Consensus 51 ~~ia~l~~-----~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~-- 123 (376)
T d1eg5a_ 51 EKVAKVLG-----VSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-- 123 (376)
T ss_dssp HHHHHHHT-----SCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--
T ss_pred HHHHHHcC-----CCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCC--
Confidence 88999998 8889999999999999988865 346677888887777766543 456799999999874
Q ss_pred CcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHH--HhCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 94 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 94 ~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~--~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
++.+|+++++++++++++++++++++|+||..+| ++++.+++ +.. ++++++|.+++. |..+..+..
T Consensus 124 ~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~---~~~i~~~~~~~~~-~~~~~vD~~q~~----g~~~~d~~~---- 191 (376)
T d1eg5a_ 124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQP---VEDVTRIVKKKNK-ETLVHVDAVQTI----GKIPFSLEK---- 191 (376)
T ss_dssp TSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHCT-TCEEEEECTTTT----TTSCCCCTT----
T ss_pred CCeECHHHHHHhcCCCceEEEEECCccccceeee---ehhhhhhhhhccc-CceeEEEeeecc----ccccccccc----
Confidence 4569999999999999999999999999999999 66666665 444 899999999875 333333333
Q ss_pred CCceEEEeccccccccccceeEEEEcChhHH-H-HHH---hhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHH
Q 018665 172 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFV-A-ACN---KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 246 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 246 (352)
.+.+++++|.+|++|.+|.++.|+ +++.. . .+. ..........+............. .............
T Consensus 192 ~~~D~~~~s~~K~~gp~G~~~l~~--~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 266 (376)
T d1eg5a_ 192 LEVDYASFSAHKFHGPKGVGITYI--RKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEI---AVEELSEAAKHME 266 (376)
T ss_dssp TCCSEEEEEGGGGTSCTTCEEEEE--CTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH---HHHTHHHHHHHHH
T ss_pred cCccceecccceeecCCCceeEEe--ccCcccCCcccCCCCcccccCCcccchhhhhHHHHhhc---cccchhhhhhhhh
Confidence 345599999999988666555444 33311 0 000 011112233444554444444432 1222334444555
Q ss_pred HHHHHHHHHhcccCCceecC--CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCC------
Q 018665 247 ERRDFLVKSFGELEGVKMSE--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD------ 318 (352)
Q Consensus 247 ~~~~~l~~~l~~~~g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~------ 318 (352)
....++.+.|.......+.. ..........+++. .+..+...|.+ +||.+++|..|..+
T Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~L~~-~gI~vr~G~~c~~~~~~~~~ 333 (376)
T d1eg5a_ 267 KLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI------------RGSTLQNLLSG-YGIYVSTSSACTSKDERLRH 333 (376)
T ss_dssp HHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC------------CHHHHHHHHHH-TTEECBC------------C
T ss_pred hhhhhhccccccccccccccccccccceeeeccCCC------------CHHHHHHHHhh-CCeEEeCcchhcCCccchhH
Confidence 56667777777652222211 11122234455543 77888887664 59999888655321
Q ss_pred -------------CeEEEEeec--CHHHHHHHHHHHHHHHh
Q 018665 319 -------------TCIRISYAA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 319 -------------~~iRi~~~~--~~~~l~~~~~~l~~~~~ 344 (352)
+++|+|++. |++|++++++.|++++.
T Consensus 334 ~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 334 VLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp HHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 369999987 89999999999999986
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=2.4e-25 Score=196.42 Aligned_cols=303 Identities=16% Similarity=0.152 Sum_probs=208.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH---HHHHh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARI 79 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~---~~~~~ 79 (352)
.|++++...+++ +.+|++++ .+++++++|||+|+..++.++.++++.+++..+.+.++. .....
T Consensus 29 ~yg~~p~~~~le------~~lA~~~G-------~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (343)
T d1m6sa_ 29 VYGEDPTINELE------RLAAETFG-------KEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVL 95 (343)
T ss_dssp GGTCCHHHHHHH------HHHHHHTT-------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHH
T ss_pred ccCCCHHHHHHH------HHHHHHHC-------CCeEEEeCCHHHHHHHHHHHHhccCCceeccccccceeeeccccccc
Confidence 578888888888 99999985 567899999999999999999999999999998776544 34445
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccC------CeeEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTE------KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~-i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
.+..+..++.. ....|++.+++.+.. ++..++ .+.+++++|.+.|.+++++|+++|+++ ++++++|+++
T Consensus 96 ~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-g~~~~~D~a~ 171 (343)
T d1m6sa_ 96 SGVMPHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEH-GINVHIDGAR 171 (343)
T ss_dssp TCCEEEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH-TCEEEEEETT
T ss_pred ccceeeccccc---cCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhc-CeEEEecccc
Confidence 56666666543 234689998888863 344444 455688999999999999999999999 9999999998
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccC
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
..+............. ......+.+.+|. ..|...+++....+.+............+.+.....++......
T Consensus 172 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-- 244 (343)
T d1m6sa_ 172 IFNASIASGVPVKEYA---GYADSVMFCLSKG--LCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIAL-- 244 (343)
T ss_dssp HHHHHHHHCCCHHHHH---HTCSEEEEESSST--TCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHH--
T ss_pred ccccccccccchhhhc---ccccccccccccc--ccccccccccccHHHHhhhHhhCcccccccchhHHHHHhhhhhh--
Confidence 8654322111111000 1122334444443 35667788888888877776655444444444444333333322
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
.......+...++...+.+.+.++.+.....+..++++++++++.. .++.++.+.|.++ ||.+.+.
T Consensus 245 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~a~~l~~~L~~~-Gi~v~~~ 310 (343)
T d1m6sa_ 245 ---TKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLK----------VNAHGFIEALRNS-GVLANAV 310 (343)
T ss_dssp ---HHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSS----------SCHHHHHHHHHHH-TEECEEE
T ss_pred ---hhhHHHHHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCc----------ccHHHHHHHHHHC-CCEEecC
Confidence 1111222333444455555555554555555566677888877531 1678999999976 9999875
Q ss_pred CCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhC
Q 018665 313 DAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 313 ~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~ 347 (352)
.++++|++++. ++|||+++++.|++++++++
T Consensus 311 ----~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~~ 343 (343)
T d1m6sa_ 311 ----SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS 343 (343)
T ss_dssp ----ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred ----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 36789999876 89999999999999999874
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=9.7e-22 Score=173.15 Aligned_cols=211 Identities=15% Similarity=0.179 Sum_probs=171.0
Q ss_pred hHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH----hcCCeEEEecccCCCCc
Q 018665 20 VQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENF 95 (352)
Q Consensus 20 ~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~----~~g~~v~~i~~~~~~~~ 95 (352)
++.+|+.- ..+..++++||++|+..++.+++++||+|++++..|.+....++ .+|+++.+++.
T Consensus 65 E~~la~LE-------g~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~------ 131 (392)
T d1gc0a_ 65 EARMASLE-------GGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM------ 131 (392)
T ss_dssp HHHHHHHH-------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT------
T ss_pred HHHHHHHh-------CCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCc------
Confidence 38888886 46788899999999999999999999999999999999887665 56999999874
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
.|++++++++++++++|++.+|.||+..+.+ +++|+++|+++ |+++++|.++..-.+ ..++ +.+-+
T Consensus 132 -~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~-g~~~vvDnT~atP~~----~~Pl-----~~GaD 197 (392)
T d1gc0a_ 132 -ADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKH-GATVVVDNTYCTPYL----QRPL-----ELGAD 197 (392)
T ss_dssp -TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGG-TCEEEEECTTTHHHH----CCGG-----GGTCS
T ss_pred -cCHHHHHHhCCCCCeEEEecccccceeeecc---hHHHHHHHHhc-CCEEEEecCccCccc----cChH-----HhCCC
Confidence 2889999999999999999999999999999 99999999999 999999999863111 1121 23555
Q ss_pred EEEeccccccc-cccceeEEEEcChhHHHHHH--hhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 176 LTVNGFSKAFA-MTGWRLGYIAGPKHFVAACN--KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 176 i~~~s~sK~~g-~~g~~~g~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
+++.|.+|.++ ....-.|.++++++.+.+++ ......+..+++.....+...+++ +..+.++..++...+
T Consensus 198 ivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T-------L~lRm~~~~~nA~~l 270 (392)
T d1gc0a_ 198 LVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-------LNLRMDRHCANAQVL 270 (392)
T ss_dssp EEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHH
T ss_pred EEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhcccc-------HHHHHHHHHHHHHHH
Confidence 99999999994 34466788888988877654 334456778899888888888776 555666777788888
Q ss_pred HHHhcccCCcee
Q 018665 253 VKSFGELEGVKM 264 (352)
Q Consensus 253 ~~~l~~~~g~~~ 264 (352)
.+.|++.|.++.
T Consensus 271 A~~L~~hp~V~~ 282 (392)
T d1gc0a_ 271 AEFLARQPQVEL 282 (392)
T ss_dssp HHHHHTCTTEEE
T ss_pred HHHHHhCCCccE
Confidence 888888776653
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.91 E-value=1.7e-21 Score=171.69 Aligned_cols=213 Identities=12% Similarity=0.211 Sum_probs=170.1
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcCCeEEEecccCCCC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISEN 94 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g~~v~~i~~~~~~~ 94 (352)
|++.+|+.- ..+..++++||++|+..++.+++++||+|++++..|.+.... +.+.|+++.+++..
T Consensus 68 LE~~la~LE-------gg~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~---- 136 (397)
T d1y4ia1 68 LEKKLAVLE-------RGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAG---- 136 (397)
T ss_dssp HHHHHHHHH-------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT----
T ss_pred HHHHHHHHh-------CCccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCC----
Confidence 338888886 467788899999999999999999999999999999887754 45789999998742
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
|++.+++++++++++|++..|.||+..+.+ +++|+++|+++ |+++++|.++.. +....++ ..+-
T Consensus 137 ---d~~~~~~~i~~~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~-gi~~vvDnT~at----P~~~~Pl-----~~Ga 200 (397)
T d1y4ia1 137 ---KPEEIRAAMRPETKVVYIETPANPTLSLVD---IETVAGIAHQQ-GALLVVDNTFMS----PYCQQPL-----QLGA 200 (397)
T ss_dssp ---SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTC----TTTCCGG-----GGTC
T ss_pred ---CHHHHHHhcCCCCcEEEecCCcccceeecc---cHHHHHHhhcC-CceEEecCcccC----cccCcch-----hcCC
Confidence 789999999999999999999999999999 99999999999 999999999753 1111121 2345
Q ss_pred eEEEeccccccc-cccceeEEEEcChhHHHHHH--hhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACN--KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 251 (352)
Q Consensus 175 ~i~~~s~sK~~g-~~g~~~g~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
++++.|.+|.++ ....=.|.++++++.+.+.+ ..+...+..++++....+...+++ +.-+.++..++...
T Consensus 201 DivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T-------L~lRm~~~~~nA~~ 273 (397)
T d1y4ia1 201 DIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-------LGIRMERHCENALK 273 (397)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHH
T ss_pred CEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc-------HHHHHHHHHHHHHH
Confidence 599999999994 33455778888988877643 334455777899988888888876 45555667778888
Q ss_pred HHHHhcccCCceec
Q 018665 252 LVKSFGELEGVKMS 265 (352)
Q Consensus 252 l~~~l~~~~g~~~~ 265 (352)
+.+.|++.|.+..+
T Consensus 274 lA~~L~~hp~V~~V 287 (397)
T d1y4ia1 274 IARFLEGHPSITRV 287 (397)
T ss_dssp HHHHHHTCTTEEEE
T ss_pred HHHHHHhCCCcCeE
Confidence 89999988776443
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=3.4e-21 Score=169.38 Aligned_cols=213 Identities=15% Similarity=0.153 Sum_probs=167.5
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcCCeEEEecccCCCC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISEN 94 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g~~v~~i~~~~~~~ 94 (352)
|++.+|+.- ..+..++++||++|+..++.+++++||.|++.+..|.+....+ ...|..+.+++.
T Consensus 55 le~~la~LE-------gg~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~----- 122 (384)
T d1cs1a_ 55 VQRALAELE-------GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ----- 122 (384)
T ss_dssp HHHHHHHHH-------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT-----
T ss_pred HHHHHHHHh-------CCCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccC-----
Confidence 338888886 4678999999999999999999999999999999998876444 456888877763
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
.|.+++++.+++++++|+++.|.||+..+.+ +++|+++|+++ |+++|||+++.. +....++ .++-
T Consensus 123 --~d~~~~~~~~~~~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~-g~~~vVDNT~at----P~~~~Pl-----~~Ga 187 (384)
T d1cs1a_ 123 --GDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREV-GAVSVVDNTFLS----PALQNPL-----ALGA 187 (384)
T ss_dssp --TCHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTC----TTTCCGG-----GGTC
T ss_pred --CCHHHHHhhccccccEEEEeccccccceecc---HHHHhhhhhhc-CcEEEEeccccC----ccccccc-----ccCC
Confidence 3789999999999999999999999999999 99999999999 999999999753 1111121 2355
Q ss_pred eEEEecccccccccc-ceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g-~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
+|++.|.+|.++..| .=.|.++. ++.+.+.+.......+..++++....+...+++ +.-+.++..++...+
T Consensus 188 DiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T-------L~lRm~~~~~nA~~l 260 (384)
T d1cs1a_ 188 DLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMELAQRNAQAI 260 (384)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHH
T ss_pred CEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccch-------hHHHHHHHHHHHHHH
Confidence 599999999995333 44566666 456667777666667778899888888887765 455566677788889
Q ss_pred HHHhcccCCceec
Q 018665 253 VKSFGELEGVKMS 265 (352)
Q Consensus 253 ~~~l~~~~g~~~~ 265 (352)
.+.|+..|.+..+
T Consensus 261 A~~L~~hp~V~~V 273 (384)
T d1cs1a_ 261 VKYLQTQPLVKKL 273 (384)
T ss_dssp HHHHTTCTTEEEE
T ss_pred HHhcccCCceeee
Confidence 9999988776443
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.90 E-value=2.5e-21 Score=170.18 Aligned_cols=209 Identities=13% Similarity=0.127 Sum_probs=167.3
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH----hcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~----~~g~~v~~i~~~~~~~~~ 96 (352)
+++|.+- ..+..++++||++|+. ++.+++++||+|++..+.|.+....++ ..|+++.+++.
T Consensus 56 ~~la~LE-------~~~~a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~------- 120 (380)
T d1ibja_ 56 SLLAKLD-------KADRAFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT------- 120 (380)
T ss_dssp HHHHHHH-------TCSEEEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT-------
T ss_pred HHHHHHc-------CCceEEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCc-------
Confidence 8888886 4677889999999996 567889999999999999998887665 46888888864
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
.+++++++++++++++|+++.|.||+..+.+ +++|+++|+++ |+++|+|+++... ....++ .++-++
T Consensus 121 ~~~~~~~~ai~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~-g~~~vVDnT~atP----~~~~Pl-----~~GaDi 187 (380)
T d1ibja_ 121 TKLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKISEMAHAQ-GALVLVDNSIMSP----VLSRPL-----ELGADI 187 (380)
T ss_dssp TSHHHHHHHCCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTT-TCEEEEECTTTCT----TTCCGG-----GTTCSE
T ss_pred chHHHHHHHhccCccEEEecccccccccccc---HHHHHHHHHHc-CCeEEeecccccc----cccccc-----ccCCCE
Confidence 2789999999999999999999999999999 99999999999 9999999997541 111222 235569
Q ss_pred EEecccccccccc-ceeEEEEcC-hhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 177 ~~~s~sK~~g~~g-~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
++.|.+|.++..+ .-.|.++.+ +.+.+.+..........++++....+.+.+++ +..+.++..++...+.+
T Consensus 188 VvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------l~lRm~~~~~nA~~lA~ 260 (380)
T d1ibja_ 188 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT-------MALRIEKQQENARKIAM 260 (380)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHH
T ss_pred EEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchh-------hhhhHHHHHHHHHHHHH
Confidence 9999999995333 345666655 56778787777777888999999888888876 55566677778888889
Q ss_pred HhcccCCcee
Q 018665 255 SFGELEGVKM 264 (352)
Q Consensus 255 ~l~~~~g~~~ 264 (352)
.|++.|.+..
T Consensus 261 ~L~~hp~V~~ 270 (380)
T d1ibja_ 261 YLSSHPRVKK 270 (380)
T ss_dssp HHHTCTTCCE
T ss_pred HHHhCCCeeE
Confidence 9988776543
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.89 E-value=1.2e-21 Score=174.30 Aligned_cols=298 Identities=13% Similarity=0.130 Sum_probs=204.8
Q ss_pred ChhhhccchhhHHHHHHHHhcCCCCCCCc--EEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCC--hHHHHHhcCCeEE
Q 018665 10 TLQMRVLWSFVQQFVINLKENGLSYTPDQ--ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPV 85 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~~~~~~~~~~~--i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~--~~~~~~~~g~~v~ 85 (352)
..+.| +.++++++ +++++ +++++|+|++++.++..+..+++.+++....+.. .....+..+....
T Consensus 35 ~~~~r------~~l~~l~~-----~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (361)
T d1m32a_ 35 VEQIR------QQLTALAT-----ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHH 103 (361)
T ss_dssp HHHHH------HHHHHHHC-----SSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHH------HHHHHHhC-----CCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccc
Confidence 35666 88888887 55554 7888999999999999998888777776655443 2244556666666
Q ss_pred EecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCcccc
Q 018665 86 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 165 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~ 165 (352)
.+..........+.+.......++++++.+++.+|.||...| +++|.++|+++ |+++++|.+++. |..+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~~-g~~~~vDa~qs~----G~~~~d~ 175 (361)
T d1m32a_ 104 AYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP---IDEVGALAHRY-GKTYIVDAMSSF----GGIPMDI 175 (361)
T ss_dssp EEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHH-TCEEEEECTTTT----TTSCCCT
T ss_pred cccccccCCccchhhHHHHHhccCccceEEEeeecccccchh---hhhhhhhhccc-ceeeEeeccccc----Ccccccc
Confidence 666554443334455555666789999999999999999999 99999999999 999999999985 2222333
Q ss_pred ccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHH------------------hhhhccccCCChHHHHHHHHH
Q 018665 166 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN------------------KIQSQFTSGASSISQKAGVAA 227 (352)
Q Consensus 166 ~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 227 (352)
.. .+.++++.|.+|.++ +..++|+++.+++.++... .....+..+++.....+...+
T Consensus 176 ~~----~~~D~~~~s~~K~l~-gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 250 (361)
T d1m32a_ 176 AA----LHIDYLISSANKCIQ-GVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQA 250 (361)
T ss_dssp TT----TTCSEEEEESSSTTC-CCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHH
T ss_pred cc----cccceEEeeeccccc-CCCCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHH
Confidence 32 355699999999985 3335888888876554322 122233456777777776666
Q ss_pred hcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC---CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 228 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
+.... ..........+.+...+.+.+.++.. +.....+ ++...+.+.+|+..+ .+..++.+.|.++
T Consensus 251 l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~~v~~~~~p~~~~---------~~~~~~~~~l~~~ 319 (361)
T d1m32a_ 251 LKELA-KEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQ---------YRFSEFYRRLKEQ 319 (361)
T ss_dssp HHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTT---------CCHHHHHHHHHHT
T ss_pred HHHHH-HhcchhhhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCCcEEEEECCCCCC---------CCHHHHHHHHHHC
Confidence 65311 12234445555666667777777765 5444322 223345566665321 1677899988876
Q ss_pred cCEEeccCCCCCCCCeEEEEee-c-CHHHHHHHHHHHHHHHh
Q 018665 305 AQVALVPGDAFGDDTCIRISYA-A-SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 305 ~gi~i~~g~~~~~~~~iRi~~~-~-~~~~l~~~~~~l~~~~~ 344 (352)
||.+.+|... .++.+||++. . +++|++++++.|++++.
T Consensus 320 -gi~i~~G~~~-~~~~~Ris~~g~~~~~di~~lv~al~~~L~ 359 (361)
T d1m32a_ 320 -GFVIYPGKVS-QSDCFRIGNIGEVYAADITALLTAIRTAMY 359 (361)
T ss_dssp -TEECEECCCS-SSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred -CcEEECCCcC-CCCEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 8998877533 5678999964 4 88999999999999863
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.89 E-value=2.3e-21 Score=174.25 Aligned_cols=294 Identities=15% Similarity=0.143 Sum_probs=206.2
Q ss_pred HHHHHHHHhcCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcCCeEEEecccCCCCccc
Q 018665 21 QQFVINLKENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLL 97 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i~~~~~~~~~~ 97 (352)
+.++++++ ++. +.|+++.|+|.+++.++..+..+++++++....+.+.. ..++..+...+.+..+... ..
T Consensus 57 ~~L~~ll~-----~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 129 (388)
T d2ch1a1 57 DGLRYIFQ-----TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDR--PF 129 (388)
T ss_dssp HHHHHHHT-----CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTS--CC
T ss_pred HHHHHHhC-----CCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccchhhhhhhccccccccccccc--cc
Confidence 77777776 444 45677889999999999999999999998887776555 4567788888888877433 35
Q ss_pred CHHHHHhhcc-CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 98 DPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 98 d~~~l~~~l~-~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
+.+..++... .+++++.+++.+|.+|...| ++++.++|+++ |+++++|.+++.. ..+..+.. ++.++
T Consensus 130 ~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~---~~~i~~~~~~~-~~~~~vD~~ss~g----~~pid~~~----~~~d~ 197 (388)
T d2ch1a1 130 SLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQICHQH-DCLLIVDAVASLC----GVPFYMDK----WEIDA 197 (388)
T ss_dssp CHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT-TCEEEEECTTTBT----TBCCCTTT----TTCCE
T ss_pred chhhhhhhhccCCcceeeeeecccccccccc---hhhhcchhccc-cceeeeeeeeccc----ccccchhc----cCceE
Confidence 6666666553 57889999999999999999 88999999999 9999999998863 22223222 45568
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHhhh-----------------------hccccCCChHHHHHHHHHhcccCC
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-----------------------SQFTSGASSISQKAGVAALGLGYA 233 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~ 233 (352)
++.|.+|.++ +..++|+++.+++.++...... ..+..+++.....++..++...
T Consensus 198 ~~~s~~K~~~-gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~-- 274 (388)
T d2ch1a1 198 VYTGAQKVLG-APPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQI-- 274 (388)
T ss_dssp EECCCC-CCC-CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--
T ss_pred EEEccccccC-CCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHH--
Confidence 8999999986 4446899999988877654211 1122345555555555555431
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCCceecC----CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 234 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE----PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
.........++.+.........+... +..... .++...+.+.+|+.. ++.++.+.|.+++||.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rs~~v~~~~~p~g~-----------~~~~l~~~l~~~~gI~v 342 (388)
T d2ch1a1 275 AEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKGV-----------DWWKVSQYAMNNFSLEV 342 (388)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCBCC
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhc-ccccccCCHHHhCCeEEEEECCCCC-----------CHHHHHHHHhhcCCEEE
Confidence 01223333334444444444444443 322221 123444677887653 78899999988889999
Q ss_pred ccCCCCCCCCeEEEE-eec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 310 VPGDAFGDDTCIRIS-YAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 310 ~~g~~~~~~~~iRi~-~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.+|..+..++.+||+ ++. ++||++++++.|++++++.++
T Consensus 343 ~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~~ 384 (388)
T d2ch1a1 343 QGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 384 (388)
T ss_dssp BCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred eCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 998776667899999 555 689999999999999998654
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.89 E-value=4.9e-22 Score=179.61 Aligned_cols=287 Identities=10% Similarity=0.071 Sum_probs=196.2
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh------cCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l------~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~ 94 (352)
+.+|++++ +++++|++++++|++++.++... ..+++.|++.+..+.+........+.++..++... +
T Consensus 77 ~~iA~llg-----a~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 149 (404)
T d1qz9a_ 77 NRLATLIG-----ARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTL--R 149 (404)
T ss_dssp HHHHTTTT-----CCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE--E
T ss_pred HHHHHHhC-----CCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceec--c
Confidence 88888887 88999999999999998776542 35678888888888776666655555554444442 2
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
...+++.+++++++++++|++++++|.||..+| +++|+++|+++ ++++++|.+++. |..+..+... +.
T Consensus 150 ~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~p---v~~i~~~~~~~-~~~~~vD~~q~~----g~~~~~~~~~----~~ 217 (404)
T d1qz9a_ 150 LVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHD---MQALTALSHEC-GALAIWDLAHSA----GAVPVDLHQA----GA 217 (404)
T ss_dssp EESSGGGHHHHCSTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHH-TCEEEEECTTTT----TTSCCCHHHH----TC
T ss_pred ccccchhHHHhcCCCceEEEEecccccccceec---HHHHhcccccc-ccceeEEeeccc----cccccccccc----cc
Confidence 346889999999999999999999999999999 99999999999 999999999976 3333333332 34
Q ss_pred eEEEeccccccccccceeEEEEcChhHHHHHHhh-----------------------hhccccCCChHHHHHHHHHhccc
Q 018665 175 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-----------------------QSQFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 175 ~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~l~~~ 231 (352)
++++.|.+|.++.+....|+++.++.+.+.+... ......+++..........+...
T Consensus 218 d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (404)
T d1qz9a_ 218 DYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF 297 (404)
T ss_dssp SEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHH
Confidence 4889999998853443568888777665543210 11122344544444444433321
Q ss_pred -CCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCC----ceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccC
Q 018665 232 -YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 306 (352)
Q Consensus 232 -~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 306 (352)
.......++...........+.+.+...++++++.|.. +.++.+..+ ++.++.+.|.++ |
T Consensus 298 ~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~--------------~~~~v~~~L~~~-g 362 (404)
T d1qz9a_ 298 AQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--------------EGYAVIQALIDR-G 362 (404)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------------THHHHHHHHHTT-T
T ss_pred HHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecC--------------CHHHHHHHHHHC-C
Confidence 01123333333344444444555555557888875432 233555554 677899998765 8
Q ss_pred EEeccCCCCCCCCeEEEEee--c-CHHHHHHHHHHHHHHHhh
Q 018665 307 VALVPGDAFGDDTCIRISYA--A-SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 307 i~i~~g~~~~~~~~iRi~~~--~-~~~~l~~~~~~l~~~~~~ 345 (352)
|.+.. ..++.+|||++ . +++|++++++.|++++++
T Consensus 363 i~~~~----r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 363 VIGDY----REPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp EECEE----ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEee----cCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 86532 13678999995 3 899999999999999975
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.88 E-value=2.2e-20 Score=164.77 Aligned_cols=210 Identities=12% Similarity=0.130 Sum_probs=167.8
Q ss_pred hHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH----hcCCeEEEecccCCCCc
Q 018665 20 VQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENF 95 (352)
Q Consensus 20 ~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~----~~g~~v~~i~~~~~~~~ 95 (352)
++++|++- ..+..++++||++|+..++.+++++||+|++....|.+....++ ..|.++..++..
T Consensus 73 E~~la~LE-------gg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~----- 140 (398)
T d1qgna_ 73 EEKISALE-------GAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA----- 140 (398)
T ss_dssp HHHHHHHH-------TCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS-----
T ss_pred HHHHHHHh-------CCceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhccccccccccccccccc-----
Confidence 38888876 46789999999999999999999999999999999998876554 578888888632
Q ss_pred ccCHHHH-HhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 96 LLDPKVL-ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 96 ~~d~~~l-~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
+.++. +..+++++++|+++.|.||+..+.+ +++|+++|+++ |+++|||+++.. ++..-+-.++-
T Consensus 141 --~~~~~~~~~~~~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~-g~~~vVDnT~at---------P~~~~Pl~~Ga 205 (398)
T d1qgna_ 141 --DVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEK-GALVCIDGTFAT---------PLNQKALALGA 205 (398)
T ss_dssp --CHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTC---------TTTCCTTTTTC
T ss_pred --chhhhhhhhccccceEEEccCccccccccch---HHHHHHHHhhc-CCEEEecceeec---------cccCCchhhCC
Confidence 34434 4455689999999999999999999 99999999999 999999999753 11111112455
Q ss_pred eEEEeccccccccc-cceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHH
Q 018665 175 TLTVNGFSKAFAMT-GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 253 (352)
Q Consensus 175 ~i~~~s~sK~~g~~-g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (352)
++++.|.+|.+|.. ..-.|.+..+++++..++......+...++.....+...+++ +.-+.++..++...+.
T Consensus 206 DiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------L~lRm~~~~~nA~~lA 278 (398)
T d1qgna_ 206 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTALRMA 278 (398)
T ss_dssp SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHH
T ss_pred CEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchH-------HHHHHHHHHHHHHHHH
Confidence 69999999999533 345677778999999888887777888999998888888765 5556667777888899
Q ss_pred HHhcccCCce
Q 018665 254 KSFGELEGVK 263 (352)
Q Consensus 254 ~~l~~~~g~~ 263 (352)
+.|++.|.+.
T Consensus 279 ~~L~~hp~V~ 288 (398)
T d1qgna_ 279 EILEAHPKVR 288 (398)
T ss_dssp HHHHTCTTEE
T ss_pred HHHHhCCCee
Confidence 9998877765
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.88 E-value=3.5e-21 Score=172.25 Aligned_cols=290 Identities=14% Similarity=0.170 Sum_probs=204.2
Q ss_pred HHHHHHHHhcCCCCC-CCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH--HHHHhcCCeEEEecccCCCCccc
Q 018665 21 QQFVINLKENGLSYT-PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLL 97 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i~~~~~~~~~~ 97 (352)
+.++++++ ++ ...|++++|+|++++.++..+..+++++++....+.+.. ...+..+.....+..+.... .
T Consensus 58 ~~l~~ll~-----~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 130 (377)
T d1vjoa_ 58 SLLRYVWQ-----TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEV--F 130 (377)
T ss_dssp HHHHHHHT-----CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCC--C
T ss_pred HHHHHHhC-----CCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhhhhhhhhcccccccccCCCCc--c
Confidence 77777775 43 457888899999999999999999999998877766443 45566777777777654332 4
Q ss_pred CHHHHHhhc-cCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 98 DPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 98 d~~~l~~~l-~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
+.+..+... +.+++++.+++.+|.||...| ++++.++|+++ |.++++|.+++. |..+..+.. .+.++
T Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~---i~~i~~~~~~~-g~~~~vDa~~~~----g~~~~~~~~----~~~d~ 198 (377)
T d1vjoa_ 131 SLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREF-GTLLLVDTVTSL----GGVPIFLDA----WGVDL 198 (377)
T ss_dssp CHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-TCEEEEECTTTT----TTSCCCTTT----TTCSE
T ss_pred cchhhhhhhhcCcceeeeeeeeeccceeeec---hhhhhhhhhhc-cceEEEecchhh----hhhhhcccc----cccce
Confidence 444444443 458888889999999999999 99999999999 999999999875 222233332 34558
Q ss_pred EEeccccccccccceeEEEEcChhHHHHHHhhh--------------------hccccCCChHHHHHHHHHhcccCCChH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ--------------------SQFTSGASSISQKAGVAALGLGYAGGE 236 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (352)
++.|.+|.++ ++..+|+++.++..++...... ......++.....++..+... ....
T Consensus 199 ~~~s~~K~~~-gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~ 275 (377)
T d1vjoa_ 199 AYSCSQKGLG-CSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRL--IAQE 275 (377)
T ss_dssp EECCSSSTTC-SCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHH--HHHH
T ss_pred eeeccccccc-CCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhh--hhhc
Confidence 8999999986 4446888888888777644211 111223333333333333322 0134
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceecCC---CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC
Q 018665 237 VVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 313 (352)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~ 313 (352)
..+...++.+++...+.+.+... +...+.+ +....+.+.+|+.. ++.++.+.|.+++||.+..|.
T Consensus 276 g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~p~~~-----------~~~~l~~~L~~~~gI~v~~G~ 343 (377)
T d1vjoa_ 276 GLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGV-----------DGKAVARRLLNEHNIEVGGGL 343 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTC-----------CHHHHHHHHHHHHCEECEECC
T ss_pred CchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeEEEEECCCCC-----------CHHHHHHHHHhcCCEEEecCc
Confidence 45677777788888888888775 5444322 23334566777643 789999999888899998887
Q ss_pred CCCCCCeEEEEe-ec--CHHHHHHHHHHHHHHHh
Q 018665 314 AFGDDTCIRISY-AA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 314 ~~~~~~~iRi~~-~~--~~~~l~~~~~~l~~~~~ 344 (352)
....++.||||. +. ++||++++++.|+++++
T Consensus 344 ~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 344 GELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp GGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred ccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 666678999994 54 78999999999999874
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=9.9e-21 Score=166.29 Aligned_cols=300 Identities=11% Similarity=0.057 Sum_probs=198.3
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChH---HHHHh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARI 79 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~---~~~~~ 79 (352)
.|++++...++| +.+|++++ .+..+++++|+|++++.++..++..++.+++....+..+. .....
T Consensus 33 ~~~~~~~~~~l~------~~la~~~g------~~~~v~f~~sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (345)
T d1v72a1 33 PYGTDELTAQVK------RKFCEIFE------RDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFF 100 (345)
T ss_dssp STTCSHHHHHHH------HHHHHHHT------SCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHH
T ss_pred ccCCCHHHHHHH------HHHHHHHC------CCcEEEECCchHHHHHHHHHHHHhcCCccccccccceeeechhhHHHh
Confidence 356677778889 99999997 4568999999999999999999888888887776654433 34555
Q ss_pred cCCeEEEecccCCCCcccCHHHHHhhccCC------ee-EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccc
Q 018665 80 ADATPVILPTRISENFLLDPKVLESKLTEK------SR-LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 152 (352)
Q Consensus 80 ~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~------~~-~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~ 152 (352)
.+..+..++.. .+...+++.+++.+.+. +. .++...+.|+.|...+.++++++.++|+++ |+++++|+++
T Consensus 101 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~D~~~ 177 (345)
T d1v72a1 101 SNGAKLMTVDG--PAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSS-SLGLHMDGSR 177 (345)
T ss_dssp TTSCEEEECCC--GGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHT-TCEEEEEETT
T ss_pred cCccccccccc--ccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhc-Cceeeecccc
Confidence 67776666543 44457999999988642 23 344566678888999999999999999999 9999999999
Q ss_pred cccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccC
Q 018665 153 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY 232 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 232 (352)
.+..+.... .++..............+..|.. .+...+.+...................+.+.....+.......
T Consensus 178 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~-- 252 (345)
T d1v72a1 178 FANALVSLG-CSPAEMTWKAGVDALSFGATKNG--VLAAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYL-- 252 (345)
T ss_dssp HHHHHHHHT-CCTTTTTGGGTCCEEEECCGGGT--CSSCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHT--
T ss_pred cceeccccc-cCHHHhhccccccccccCccccc--cccccccccchhhhhhhccccccccccccchhhHHhhhhHHHH--
Confidence 864432211 11111111112223343444432 2222223334443333333222222333333333333322222
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 312 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g 312 (352)
......+......++...+.+.+.+++++.+..|..++++++.++ .++++.|+++ |+.+.++
T Consensus 253 -~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~----------------~~~~~~L~~~-gi~v~~~ 314 (345)
T d1v72a1 253 -TDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD----------------SAMIDALLKA-GFGFYHD 314 (345)
T ss_dssp -STTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC----------------HHHHHHHHHT-TCBCBCS
T ss_pred -HHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcC----------------HHHHHHHHHc-CCCcccc
Confidence 234455556666777788889999999999888887888887754 3566778876 8877654
Q ss_pred CCCCCCCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 313 DAFGDDTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 313 ~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
. ..++.+|++++. |+||||++++.|+++
T Consensus 315 ~--~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 315 R--WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp S--SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred C--CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3 246899999986 899999999999875
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=6e-20 Score=162.12 Aligned_cols=212 Identities=10% Similarity=0.065 Sum_probs=168.9
Q ss_pred hHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH----hcCCeEEEecccCCCCc
Q 018665 20 VQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENF 95 (352)
Q Consensus 20 ~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~----~~g~~v~~i~~~~~~~~ 95 (352)
++.+|+.- ..+..++++||++|+..++.+++++||+|++....|.+....++ ..|+++..++..
T Consensus 64 e~~la~LE-------g~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~----- 131 (391)
T d1cl1a_ 64 QQAMCELE-------GGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL----- 131 (391)
T ss_dssp HHHHHHHH-------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----
T ss_pred HHHHHHHh-------CCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCc-----
Confidence 38888875 46789999999999999999999999999999999998886665 568888888642
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh--CCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~--~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
|.+.+++++++++++|++..|.||+..+.+ +++++++|++ + |++++||+++... ....++ +++
T Consensus 132 --d~~~~~~~i~~~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~-g~~~vVDnT~atP----~~~~Pl-----~~G 196 (391)
T d1cl1a_ 132 --IGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVP-DAIIMIDNTWAAG----VLFKAL-----DFG 196 (391)
T ss_dssp --CGGGGGGTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCT-TCEEEEECTTTTT----TSSCGG-----GGT
T ss_pred --cccccccccccccceeeecccCcccccccc---cHHHHHHHHhccC-CcEEEEeccccch----hhhccc-----ccc
Confidence 678899999999999999999999999999 8888888854 6 9999999997641 111122 134
Q ss_pred ceEEEecccccccccc-ceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 252 (352)
Q Consensus 174 ~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 252 (352)
-++++.|.+|.++..+ .=.|.++.+++..+.+..........+++.....+...+++ +..+.++..++...+
T Consensus 197 aDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~T-------L~lR~~~~~~nA~~v 269 (391)
T d1cl1a_ 197 IDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRT-------LGVRLRQHHESSLKV 269 (391)
T ss_dssp CSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHH
T ss_pred cceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchh-------HHHHHHHHHHHHHHH
Confidence 5599999999995333 45677778888888887777777778888888777777665 555666777788889
Q ss_pred HHHhcccCCceec
Q 018665 253 VKSFGELEGVKMS 265 (352)
Q Consensus 253 ~~~l~~~~g~~~~ 265 (352)
.+.|++.|.+..+
T Consensus 270 A~~L~~hp~V~~V 282 (391)
T d1cl1a_ 270 AEWLAEHPQVARV 282 (391)
T ss_dssp HHHHHTCTTEEEE
T ss_pred HHHHHhccccccc
Confidence 9999888776544
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.5e-20 Score=168.63 Aligned_cols=278 Identities=15% Similarity=0.131 Sum_probs=194.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc----------CCCCEEEecCCCCCChH-HHHHhcC------------CeEEEecccC
Q 018665 35 TPDQILVSNGAKQSILQAVLAVC----------SPGDEVIIPAPFWVSYP-EMARIAD------------ATPVILPTRI 91 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~----------~~~~~vl~~~~~~~~~~-~~~~~~g------------~~v~~i~~~~ 91 (352)
..+.+++++++++|++.+++... ....+++.....|+... ......+ ..+..+|.
T Consensus 97 ~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-- 174 (404)
T d2byla1 97 NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-- 174 (404)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT--
T ss_pred cccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc--
Confidence 45789999999999999998742 12346776666665433 3332211 12333332
Q ss_pred CCCcccCHHHHHhhccC-CeeEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCC
Q 018665 92 SENFLLDPKVLESKLTE-KSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 169 (352)
Q Consensus 92 ~~~~~~d~~~l~~~l~~-~~~~i~i~~p~nptG-~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~ 169 (352)
.|++++++.+.+ +..++++.......| ..+|++.+++|.++|+++ |+++|+||++.+|...|... .+....
T Consensus 175 -----~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tGfgR~G~~~-a~~~~g 247 (404)
T d2byla1 175 -----NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH-QVLFIADEIQTGLARTGRWL-AVDYEN 247 (404)
T ss_dssp -----TCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSS-GGGGGT
T ss_pred -----cCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhc-CeEEEeeccccccccccccc-hhhhcC
Confidence 378999998864 666777766566667 556788999999999999 99999999999987766532 222222
Q ss_pred CCCCceEEEecccccccccc-ceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Q 018665 170 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248 (352)
Q Consensus 170 ~~~~~~i~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 248 (352)
-.+| +.+++|.++ +| .++|.+++++++.+.+.......+++.|+++.+++.+.|+.-. -+.+.++.+++
T Consensus 248 v~PD----i~~~gK~l~-gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~-----~~~l~~~~~~~ 317 (404)
T d2byla1 248 VRPD----IVLLGKALS-GGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLE-----EENLAENADKL 317 (404)
T ss_dssp CCCS----EEEECGGGG-TTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH-----HTTHHHHHHHH
T ss_pred CCCC----EEEECchhh-CCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHH-----hcCchhhhhHh
Confidence 2122 457899998 66 8999999999998877776667788899999999999998511 12344555556
Q ss_pred HHHHHHHhccc--CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEee
Q 018665 249 RDFLVKSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 326 (352)
Q Consensus 249 ~~~l~~~l~~~--~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~ 326 (352)
-.++.+.|+++ +.+.-+. ..|.+..+.+.+... ....++.++++++ |+++.+. ..+.+|++++
T Consensus 318 g~~l~~~l~~l~~~~i~~vR-g~Gl~~~i~~~~~~~---------~~~~~~~~~l~~~-Gvl~~~~----~~~~i~l~Pp 382 (404)
T d2byla1 318 GIILRNELMKLPSDVVTAVR-GKGLLNAIVIKETKD---------WDAWKVCLRLRDN-GLLAKPT----HGDIIRFAPP 382 (404)
T ss_dssp HHHHHHHHHTSCTTTEEEEE-EETTEEEEEECCCSS---------CCHHHHHHHHHHT-TEECEEE----ETTEEEECCC
T ss_pred hHHHHHHHHhhccccceeee-ecccEEEEEEecCCc---------hhHHHHHHHHHhC-CeEEecC----CCCEEEEECC
Confidence 66677777665 2222222 235555555543211 1577899999876 9998763 2568999987
Q ss_pred c--CHHHHHHHHHHHHHHHhhh
Q 018665 327 A--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 327 ~--~~~~l~~~~~~l~~~~~~~ 346 (352)
. ++++|++++++|++++.++
T Consensus 383 L~it~~~id~~~~~l~~al~~f 404 (404)
T d2byla1 383 LVIKEDELRESIEIINKTILSF 404 (404)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHHHHcC
Confidence 6 9999999999999999864
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=1.5e-20 Score=165.46 Aligned_cols=287 Identities=13% Similarity=0.082 Sum_probs=203.4
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCCh--HHHHHhcCCeEEEecccCCCCcccC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLD 98 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~--~~~~~~~g~~v~~i~~~~~~~~~~d 98 (352)
+.+++.++ .+.+.+++++|+|.+++.++..+++++++|++....+++. ...++..+.++..++.+... .++
T Consensus 40 ~~l~~ll~-----~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~--~~~ 112 (348)
T d1iuga_ 40 GLLREAFR-----TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGD--TPR 112 (348)
T ss_dssp HHHHHHHT-----CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTC--CCC
T ss_pred HHHHHHhC-----CCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHHHHHHHHhcCcccccccccCCC--ccc
Confidence 55566654 4567899999999999999999999999999888776543 36778899999998876432 234
Q ss_pred HHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-CCEEEEecccccccccCCCCccccccCCCCCCceEE
Q 018665 99 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 177 (352)
Q Consensus 99 ~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (352)
+++ ....+++.+++++..+.+|...| +++|.++|+++ ++.++++|.+++.. ..+..+.. ++-+++
T Consensus 113 ~~~---~~~~~~~~v~~~h~eTstG~~~~---i~~i~~~~~~~~~~~l~~vDavss~g----~~~i~~d~----~~iD~~ 178 (348)
T d1iuga_ 113 PED---VAKEGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSLL----VGEVALEA----MGVDAA 178 (348)
T ss_dssp TTT---SCCSSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTBT----TBCCCSGG----GTCSEE
T ss_pred ccc---ccccCCCeeEEEecchhhhhhcc---HHHHHHHHHhhhccceeechhhhccc----cccccccc----ccCCEE
Confidence 433 33468889999999999999999 88889998776 25789999988752 22222222 345589
Q ss_pred Eecccccc-ccccceeEEEEcChhHHHHHHh---------h-----hhccccCCChHHHHHHHHHhcccCCChHHHHHHH
Q 018665 178 VNGFSKAF-AMTGWRLGYIAGPKHFVAACNK---------I-----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 242 (352)
Q Consensus 178 ~~s~sK~~-g~~g~~~g~l~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (352)
++|.+|.+ |.+ ++|+++.+++.+++++. . ...+.++++....+++.++++... .+ ..+..
T Consensus 179 ~~~sqK~l~gpp--G~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~--~~-~~~~~ 253 (348)
T d1iuga_ 179 ASGSQKGLMCPP--GLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVL--PR-LEEHL 253 (348)
T ss_dssp EEESSSTTCCCS--CEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG--GG-HHHHH
T ss_pred EeccccceecCC--ceeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHH--HH-HhHHH
Confidence 99999999 544 58999999887765321 0 123345788888888888886521 22 33333
Q ss_pred HHHHHHHHHHHHHhcccCCceecCCC-CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 243 KAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
+..+...+.+...++.. |+...... +...+.+.+|+.. +..++.+.|.+ +|+.+.+|...-....+
T Consensus 254 ~~~~~~~~~~~~~~~~~-gl~~~~~~~s~~v~~~~~P~g~-----------~~~~~~~~l~~-~gi~i~~G~~~l~~~~~ 320 (348)
T d1iuga_ 254 ALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGV-----------PYARVKEAFAQ-RGAVIAGGQGPLKGKVF 320 (348)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTC-----------CHHHHHHHHHT-TTEECEECCGGGTTTEE
T ss_pred HHHHHHHHHHhhhhhhh-hhccChhhcCCeEEEEECCCCC-----------CHHHHHHHHHH-CCeEEEcCccccCCCEE
Confidence 33343444555555544 77665332 2224667888754 78899988875 59999888655446789
Q ss_pred EEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 322 RISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 322 Ri~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
||+... +.+|++++++.|+++++++
T Consensus 321 RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 321 RLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp EECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 998653 8899999999999999875
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.87 E-value=2.1e-20 Score=161.94 Aligned_cols=213 Identities=15% Similarity=0.143 Sum_probs=164.3
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHH----HHhcCCeEEEecccCCCC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISEN 94 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~----~~~~g~~v~~i~~~~~~~ 94 (352)
+++.+|++- ..+..++++||++|+..++.+++++||+|+++...|.+.... +++.|+++.+++..
T Consensus 3 LE~~la~Le-------g~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~---- 71 (331)
T d1pffa_ 3 LEGKIAKLE-------HAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA---- 71 (331)
T ss_dssp HHHHHHHHH-------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT----
T ss_pred HHHHHHHHh-------CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc----
Confidence 458899886 467889999999999999999999999999999999877654 56789999998753
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHH-HhCCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~-~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
|++.+++++++++++|++..|.||+..+.+ ++++++++ +++ |+++|+|+++..... ..++ +++
T Consensus 72 ---d~~~~~~~i~~~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~-~~~~vVDnT~atp~~----~~pl-----~~G 135 (331)
T d1pffa_ 72 ---VPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQK-DILVIVDNTFASPIL----TNPL-----DLG 135 (331)
T ss_dssp ---STTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSS-SCEEEEECTTTHHHH----CCGG-----GGT
T ss_pred ---chhhHhhhcccccceeeeeccccccccccc---chhhhhhhhccc-CceEEeecccccccc----cccc-----ccC
Confidence 788999999999999999999999999999 88888775 568 999999999764211 1111 134
Q ss_pred ceEEEecccccccc-ccceeEEEEcChhHHHHHHhh--hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFAM-TGWRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 250 (352)
Q Consensus 174 ~~i~~~s~sK~~g~-~g~~~g~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
-++++.|.+|.++. ...-.|.++.+++.+...... ....+..+++.....+...+++ +..+.++..++..
T Consensus 136 aDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------l~~Rm~~~~~nA~ 208 (331)
T d1pffa_ 136 VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-------LDMRVKRAAENAQ 208 (331)
T ss_dssp CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred CCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 45999999999943 335567777887766654432 3334566777777777666644 6666777778888
Q ss_pred HHHHHhcccCCceec
Q 018665 251 FLVKSFGELEGVKMS 265 (352)
Q Consensus 251 ~l~~~l~~~~g~~~~ 265 (352)
.+.+.|++.|.++.+
T Consensus 209 ~lA~~L~~hp~V~~V 223 (331)
T d1pffa_ 209 KVAEFLHEHKAVKKV 223 (331)
T ss_dssp HHHHHHHHCTTCCCE
T ss_pred HHHHhhhhCCcEEee
Confidence 899999887776433
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.87 E-value=8.5e-21 Score=172.97 Aligned_cols=278 Identities=14% Similarity=0.117 Sum_probs=187.7
Q ss_pred CcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHHHhcCCeEEEeccc-CCCCcccCHHHHHhhccC-----
Q 018665 37 DQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTR-ISENFLLDPKVLESKLTE----- 108 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~-~~~~~~~d~~~l~~~l~~----- 108 (352)
.......|+++++..++.++. .+++.|+++...|.++...+...|..++.++.. .+..+.+|+++|++++++
T Consensus 131 ~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~ 210 (434)
T d2z67a1 131 HAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELG 210 (434)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTT
T ss_pred ceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcC
Confidence 344445566666666666653 267899999999999999999999999988753 234567999999999963
Q ss_pred CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccc-cCCCCccccccCCCCCCceEEEecccccccc
Q 018665 109 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFSKAFAM 187 (352)
Q Consensus 109 ~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 187 (352)
++.+|++.+|++++|.+.| +++|+++|+++ |+++++|++++.+. +.+........ .+.++++.|.+|.++
T Consensus 211 ~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~-~~~l~vD~a~g~~~~~~~~~~~~~~~----~~~D~~~~s~hK~l~- 281 (434)
T d2z67a1 211 NRPCVLSTLTFFPPRNSDD---IVEIAKICENY-DIPHIINGAYAIQNNYYLEKLKKAFK----YRVDAVVSSSDKNLL- 281 (434)
T ss_dssp CCEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHHHHT----SCCSEEEEEHHHHHC-
T ss_pred CceEEEeccCcCCCccccC---HHHHHHHHHHh-CCeEEEeccchhhhhhcccccccccc----CCcceEEEcCccccc-
Confidence 6777888999999999999 99999999999 99999999987432 10111111111 234488999999987
Q ss_pred ccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhccc---CCce
Q 018665 188 TGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVK 263 (352)
Q Consensus 188 ~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g~~ 263 (352)
.+.+.|++.. ++.+++++.+.....+...+.....+....+. .....+..++..++++++.+.|+++ .+..
T Consensus 282 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~-----~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ 356 (434)
T d2z67a1 282 TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SKNYLELVKNQKNSKKLLDELLNDLSKKTGGK 356 (434)
T ss_dssp CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHH-----HhcchhHHHHHHHHHHHHHHHHHHhhhhcCce
Confidence 4445666654 55666666554332222222222222222222 4556677777777777887777664 3666
Q ss_pred ecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccC-----------CCCCCCCeEEEEeec--CHH
Q 018665 264 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG-----------DAFGDDTCIRISYAA--SLT 330 (352)
Q Consensus 264 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g-----------~~~~~~~~iRi~~~~--~~~ 330 (352)
+..+.....+.+.+.. +..++...|.++ ||..... ..++..+++|++++. ++|
T Consensus 357 ll~~~~~~~~~~~~~~-------------~~~~l~~~L~~~-gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~e 422 (434)
T d2z67a1 357 FLDVESPIASCISVNS-------------DPVEIAAKLYNL-RVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTE 422 (434)
T ss_dssp BCCCCCSSEEEEECSS-------------CHHHHHHHHHHT-TEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHH
T ss_pred ecCCCCCceeeeecCC-------------CHHHHHHHHHHc-CCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHH
Confidence 6554444433333332 778888888876 8853211 122345789999887 999
Q ss_pred HHHHHHHHHHHH
Q 018665 331 TLQAAVERIKKG 342 (352)
Q Consensus 331 ~l~~~~~~l~~~ 342 (352)
|||++++.|+++
T Consensus 423 dID~~i~~L~kI 434 (434)
T d2z67a1 423 DIVNSVSKLEKI 434 (434)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 999999999863
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.87 E-value=4.3e-20 Score=165.08 Aligned_cols=287 Identities=15% Similarity=0.169 Sum_probs=193.7
Q ss_pred hhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcc
Q 018665 18 SFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 18 ~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+|++.+|++++ .++.+.++|+|+|+..++.++ +++||+|+++..+|.+...++...|..++.+++++ +++.
T Consensus 35 ~~E~~la~~~g-------~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~~~-~~~~ 106 (376)
T d1mdoa_ 35 ELEAAFCRLTG-------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR-DTLM 106 (376)
T ss_dssp HHHHHHHHHHC-------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TTCC
T ss_pred HHHHHHHHHHC-------cCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchhccccceeeecccc-cccC
Confidence 35599999985 567889999999999999998 78999999999999999999999999999999986 4567
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
+|++.|++++++++++|+++ +..|...+ +++|.++|+++ |+++|+|++++....-.. ... ...+..+
T Consensus 107 ~d~~~l~~~i~~~tkaIi~~---h~~G~~~~---~~~i~~i~~~~-~i~vIeD~a~a~g~~~~~--~~~----g~~g~~~ 173 (376)
T d1mdoa_ 107 VTPEHIEAAITPQTKAIIPV---HYAGAPAD---LDAIYALGERY-GIPVIEDAAHATGTSYKG--RHI----GARGTAI 173 (376)
T ss_dssp BCHHHHHHHCCTTEEEECCB---CGGGCCCC---HHHHHHHHHHH-TCCBCEECTTCTTCEETT--EET----TSSSEEE
T ss_pred CCHHHHHHhcCCCCeEEEEe---CCCCCccc---hhHHHHHHHhc-CceEEeccchhccCeeCC--eec----ccccCcc
Confidence 99999999999999998865 46788888 88999999999 999999999986321110 111 1123223
Q ss_pred EEeccccccccccceeEEEEc-ChhHHHHHHhhhhc------------------------cccCCChHHHHHHHHHhccc
Q 018665 177 TVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ------------------------FTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~l~~~ 231 (352)
+-...+|.++ .|- .|.+++ ++++.+.++..... +...++....+.....+
T Consensus 174 ~Sf~~~K~l~-~g~-GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL--- 248 (376)
T d1mdoa_ 174 FSFHAIKNIT-CAE-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL--- 248 (376)
T ss_dssp EECCTTSSSC-SSS-CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH---
T ss_pred ccCCCcCCCC-CCC-CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhh---
Confidence 3333469886 443 466665 45566666544221 11223333333232222
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCC----ceEEE-eecCCccCCcccCCCCCCChHHHHHHHHHccC
Q 018665 232 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLF-IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 306 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~----g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 306 (352)
..+++..++.+++...+.+.|+++++........ .++.+ +.+.... . ..+.+++.+.|.++ |
T Consensus 249 ----~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~Rd~l~~~L~~~-g 315 (376)
T d1mdoa_ 249 ----QKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEAR----C----GITRDALMASLKTK-G 315 (376)
T ss_dssp ----HTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHH----H----SSCHHHHHHHHHHT-T
T ss_pred ----hhhhHHHHHHhhhhhhhhhhccccccccccccccccccccccccccccccc----c----hhhHHHHHHHHHHC-C
Confidence 3355666677778888888888875554443221 11111 1111100 0 01456788998876 8
Q ss_pred EEeccCCCC-----------CC----------CCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 307 VALVPGDAF-----------GD----------DTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 307 i~i~~g~~~-----------~~----------~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
|.+.+.... .. ...+.|.+.. +++|+++.++.|++++
T Consensus 316 I~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 316 IGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp BCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 887643110 00 2357776665 8899999999999875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=3.9e-20 Score=165.03 Aligned_cols=285 Identities=15% Similarity=0.146 Sum_probs=200.0
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHH-HHHhcC------------CeEE
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPE-MARIAD------------ATPV 85 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~-~~~~~g------------~~v~ 85 (352)
..+++.+.... +...+.+++++++++|++.+++... ....+|+.....|++... .....| ..+.
T Consensus 82 ~~la~~l~~~~-~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~ 160 (387)
T d1vefa1 82 GEFYRTLTAIL-PPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVE 160 (387)
T ss_dssp HHHHHHHHHTS-CTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEE
T ss_pred HHHHHHhhhhc-cccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCce
Confidence 55555555221 1123579999999999999998742 234678888877776543 332222 1233
Q ss_pred EecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 86 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 86 ~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
.+|. .|.+.|++.+++++.+|++...+...|. ..|.+.+++|.++|++| |+++|.||++.++...|... .
T Consensus 161 ~~p~-------~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tGfgR~G~~~-~ 231 (387)
T d1vefa1 161 FIPY-------NDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEK-GALLILDEIQTGMGRTGKRF-A 231 (387)
T ss_dssp EECT-------TCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSS-T
T ss_pred EeCC-------CCHHHHHHhcCCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHc-CceEEecccccccCccCCCc-c
Confidence 3432 2789999999999998888766666675 46788999999999999 99999999999987766422 2
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
.....-. .-+.+++|.++ +|..++.++..++.++.+.......+++.|+++.+++.+.++. -+ -.+..++
T Consensus 232 ~~~~~v~----PDi~~~gK~l~-gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~----l~-~~~~~~~ 301 (387)
T d1vefa1 232 FEHFGIV----PDILTLAKALG-GGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRY----LE-RTRLWER 301 (387)
T ss_dssp HHHHTCC----CSEEEECGGGG-TTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHH----HH-HHTTHHH
T ss_pred cccCCcC----CceeeecccCC-CCccccccccceeeeeccccCCccccCCCCcchhhhcccchhh----cc-cccccch
Confidence 1111211 12666789998 8899999999999888776666667788999999999999875 11 2345566
Q ss_pred HHHHHHHHHHHhccc--CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEE
Q 018665 245 FRERRDFLVKSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 322 (352)
Q Consensus 245 ~~~~~~~l~~~l~~~--~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iR 322 (352)
+++.-+++.+.|+++ +.+.-+. ..|.+..+++.+. ....+.+.+.++ |+.+.+.. ++.+|
T Consensus 302 v~~~g~~l~~~L~~l~~~~v~~vr-g~Gl~~~ie~~~~------------~~~~~~~~~~~~-g~l~~~~g----~~~ir 363 (387)
T d1vefa1 302 AAELGPWFMEKLRAIPSPKIREVR-GMGLMVGLELKEK------------AAPYIARLEKEH-RVLALQAG----PTVIR 363 (387)
T ss_dssp HHHHHHHHHHHHHTSCCTTEEEEE-EETTEEEEEESSC------------SHHHHHHHHHHH-CEECEESS----TTEEE
T ss_pred HhhhhHHHHHHHHhcCCCceEEEe-ecceEEEEEEeCC------------chHHHHHHHHHC-CCeEEecC----CCEEE
Confidence 666777778888765 2222222 2355566777653 455666666655 77766532 56899
Q ss_pred EEeec--CHHHHHHHHHHHHHHH
Q 018665 323 ISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 323 i~~~~--~~~~l~~~~~~l~~~~ 343 (352)
++++. ++++|+++++++++++
T Consensus 364 ~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 364 FLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EECCccCCHHHHHHHHHHHHHHh
Confidence 98876 9999999999999987
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=3.5e-20 Score=167.75 Aligned_cols=313 Identities=10% Similarity=0.045 Sum_probs=197.5
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHH-HhcCC-------------eE
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMA-RIADA-------------TP 84 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~-~~~g~-------------~v 84 (352)
..+++.+...-..-..+.++++++|++|++.+++... ....+|+.....|++..... ...|. ..
T Consensus 86 ~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~ 165 (425)
T d1sffa_ 86 LELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHV 165 (425)
T ss_dssp HHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSE
T ss_pred HHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCc
Confidence 4455555522111123679999999999999998752 23467888777777765433 33221 11
Q ss_pred EEecccC--CCCccc----CHHHHHhhc--cCCeeEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEeccccccc
Q 018665 85 VILPTRI--SENFLL----DPKVLESKL--TEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 155 (352)
Q Consensus 85 ~~i~~~~--~~~~~~----d~~~l~~~l--~~~~~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~ 155 (352)
...+.+. ...... +.+++.... ..++.++++...+...|. .+|++.+++|.++|+++ |+++|+||++.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV~tG~ 244 (425)
T d1sffa_ 166 YRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEH-GIMLIADEVQSGA 244 (425)
T ss_dssp EEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHH-TCEEEEECTTTTT
T ss_pred cccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHc-CceEEeccccccC
Confidence 1111111 111000 111111111 236677777766666665 56788999999999999 9999999999997
Q ss_pred ccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCCh
Q 018665 156 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
...|.... .....-. .-+.+++|.+| +|+++|.+++++++++.+.......+++.|+++++++.++|+.-.. .
T Consensus 245 gR~g~~~a-~~~~gv~----PDi~~~gK~l~-gG~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~ 317 (425)
T d1sffa_ 245 GRTGTLFA-MEQMGVA----PDLTTFAKSIA-GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ-E 317 (425)
T ss_dssp TTTSSSSG-GGGTTSC----CSEEEECGGGG-TSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-T
T ss_pred CCcchhhH-HHhcCCC----ccceecccccC-CCcceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH-h
Confidence 76664322 1222221 22666889998 7899999999999988877666677889999999999999986211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 315 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~ 315 (352)
+..+.....-.+..+.+.+.+++.+.+.-+... |.+..+.+.......... ......+.++++++ |+.+.+++.
T Consensus 318 ~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~-Gl~~~i~f~~~~~~~~~~---~~~~~~~~~~l~~~-Gvl~~~~g~- 391 (425)
T d1sffa_ 318 NLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHNKPD---AKLTAEIVARARDK-GLILLSCGP- 391 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEEBGGGCTTSBC---HHHHHHHHHHHHHT-TEECEEEST-
T ss_pred hhhhhhhhhhhhhhhhhhhhHhhCCceEEEEcc-ccEEEEEEeccCccCCcc---HHHHHHHHHHHHHC-CCEEeccCC-
Confidence 334444444455555556666666444434333 444555543211110000 00245688888876 899877542
Q ss_pred CCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 316 GDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 316 ~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
..+.+|++++. +++||+++++++++++++++.
T Consensus 392 -~~n~i~~~PpL~it~~eid~~l~~l~~al~eikk 425 (425)
T d1sffa_ 392 -YYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ 425 (425)
T ss_dssp -TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 25789999876 999999999999999998763
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=2.7e-19 Score=158.63 Aligned_cols=213 Identities=13% Similarity=0.123 Sum_probs=159.2
Q ss_pred hHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----HhcCCeEEEecccCCCCc
Q 018665 20 VQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENF 95 (352)
Q Consensus 20 ~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----~~~g~~v~~i~~~~~~~~ 95 (352)
++++|+.- ..+..++++||++|+..++.+++++||+|+++...|.+....+ ...|+++.+++..
T Consensus 64 E~~la~LE-------~~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~----- 131 (421)
T d2ctza1 64 EKRLAALE-------GGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE----- 131 (421)
T ss_dssp HHHHHHHH-------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT-----
T ss_pred HHHHHHHh-------CCCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccc-----
Confidence 38888876 4678899999999999999999999999999999998877544 5789999888643
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCce
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 175 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
-+.+..+..+++++++|+++.|.||+..+.+ +++|+++|+++ |+++++|+++.. .++..-+-..+-+
T Consensus 132 -~~~~~~~~~~~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~-g~~~vvDnT~a~--------tP~~~~Pl~~GaD 198 (421)
T d2ctza1 132 -ERPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREK-GVALIVDNTFGM--------GGYLLRPLAWGAA 198 (421)
T ss_dssp -CCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECGGGG--------GGTSCCGGGGTCS
T ss_pred -cCcchhccccCCCceEEEEcCCCcceeEecc---hHHHHHHHHhc-CCceEecccccc--------cceeccccccCCc
Confidence 1456667778899999999999999999999 99999999999 999999999752 1111111123555
Q ss_pred EEEecccccccccc-ceeEEEEcChh-------------------------------HHHHH-HhhhhccccCCChHHHH
Q 018665 176 LTVNGFSKAFAMTG-WRLGYIAGPKH-------------------------------FVAAC-NKIQSQFTSGASSISQK 222 (352)
Q Consensus 176 i~~~s~sK~~g~~g-~~~g~l~~~~~-------------------------------~~~~~-~~~~~~~~~~~~~~~~~ 222 (352)
+++.|.+|.++..+ .=.|.++.+.+ ++.+. .......+..++++...
T Consensus 199 iVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~ 278 (421)
T d2ctza1 199 LVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAW 278 (421)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHH
T ss_pred EEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 99999999995344 44566654332 11111 11223356678888888
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCcee
Q 018665 223 AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 264 (352)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 264 (352)
.+...+++ +.-+.++..++...+.+.|++.|.+.-
T Consensus 279 l~~rgl~T-------L~lRm~~~~~nA~~vA~~L~~hp~V~~ 313 (421)
T d2ctza1 279 VVLLGMET-------LSLRAERHVENTLHLAHWLLEQPQVAW 313 (421)
T ss_dssp HHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred HHhcCCcc-------hhhHHHHHHHHHHHHHhhhccCCCeeE
Confidence 88888766 555566677788888999988877633
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=1.1e-19 Score=162.73 Aligned_cols=284 Identities=12% Similarity=0.071 Sum_probs=199.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc---CCCCEEEecCCCCCChH--HHHHhcCCeEEEecccCCCCcccCHHHHHhhcc-C
Q 018665 35 TPDQILVSNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLT-E 108 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~---~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~-~ 108 (352)
+.+.|++|+|+|++++.++..+. ++||+|++....+++.. ..++..+..+..+...+ .+...+.+.+++.+. .
T Consensus 56 ~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 134 (382)
T d2bkwa1 56 KSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLK-IGESVPLELITEKLSQN 134 (382)
T ss_dssp TCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSS-TTSCCCHHHHHHHHHHS
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhccccccccccccccC-CCCccchhHHHHHhhhc
Confidence 56789999999999999999985 57899999887776544 45667888887776442 333467888877764 5
Q ss_pred CeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-CCEEEEecccccccccCCCCccccccCCCCCCceEEEecccccccc
Q 018665 109 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 187 (352)
Q Consensus 109 ~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 187 (352)
+++++++++.++.||...| +.++.+.|+++ +++++++|.+++. |..+..+.. ++.++++.|.+|+++
T Consensus 135 ~~~~v~~~~~~~~tg~~~~---~~~~~~~~~~~~~~~~~~vDa~qs~----g~~pid~~~----~giD~~~~s~~K~l~- 202 (382)
T d2bkwa1 135 SYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSI----GCEEFEFDE----WGVDFALTASQKAIG- 202 (382)
T ss_dssp CCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTT----TTSCCCTTT----TTCSEEEEESSSTTC-
T ss_pred cchheeeeecccccccccc---chhhhhhccccccceeeeeeccccc----ccccccccc----cCeeEEeecccccCc-
Confidence 7889999999999999999 77777777654 1599999999876 333333332 345599999999994
Q ss_pred ccceeEEEEcChhHHHHHHhhh--------------------------hccccCCChHHHHHHHHHhcccCCChHHHHHH
Q 018665 188 TGWRLGYIAGPKHFVAACNKIQ--------------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKM 241 (352)
Q Consensus 188 ~g~~~g~l~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (352)
+..++|+++.++++++.+.... ..+..+++.....++..+++.. ..+..+..
T Consensus 203 gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~--~~~g~~~~ 280 (382)
T d2bkwa1 203 APAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI--LEEGLHKR 280 (382)
T ss_dssp CCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHH
T ss_pred CCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHH--HHhhhhhh
Confidence 3346899999998877643211 1233467777788888887641 23456667
Q ss_pred HHHHHHHHHHHHHHhcccCCceecCC--C---CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCC-
Q 018665 242 VKAFRERRDFLVKSFGELEGVKMSEP--Q---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF- 315 (352)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~g~~~~~~--~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~- 315 (352)
.++.+++.+++++.+....+...+.+ . ...++.+..+ ++.++.+.|.+ +||.+.+|...
T Consensus 281 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~--------------~~~~~~~~L~~-~gi~i~~G~~~~ 345 (382)
T d2bkwa1 281 WDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVA--------------DPPDVIAFLKS-HGVVIAGGIHKD 345 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECS--------------CHHHHHHHHHH-TTEECBCCCCTT
T ss_pred HHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCC--------------CHHHHHHHHHH-CCeEEECCCChh
Confidence 77777788888888876545444421 1 1122345554 56788887765 59999887543
Q ss_pred CCCCeEEEE-eec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 316 GDDTCIRIS-YAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 316 ~~~~~iRi~-~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
..++.+||+ ++. ++|+++.+++.|+.+.+.+++
T Consensus 346 ~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~ 381 (382)
T d2bkwa1 346 IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 381 (382)
T ss_dssp TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 235789999 655 567778888877777666654
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.85 E-value=4.7e-19 Score=156.53 Aligned_cols=212 Identities=13% Similarity=0.151 Sum_probs=165.9
Q ss_pred hhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH----HHHhcCCeEEEecccCCCC
Q 018665 19 FVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISEN 94 (352)
Q Consensus 19 ~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~----~~~~~g~~v~~i~~~~~~~ 94 (352)
|++.+++.- ..+..+.++||++|+..++.+++++||+|++.+..|.+... .+...|+++.+++..
T Consensus 64 le~~la~LE-------g~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~---- 132 (394)
T d1e5ea_ 64 LEGKIAFLE-------KTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA---- 132 (394)
T ss_dssp HHHHHHHHH-------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT----
T ss_pred HHHHHHHHh-------CCcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCC----
Confidence 338888775 46788999999999999999999999999999999987654 456789999999753
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHh-CCCEEEEecccccccccCCCCccccccCCCCCC
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 173 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~-~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
|++++++++++++++|++..|.||+..+.+ ++++++.+++ + ++++|+|+++..- ....++ .++
T Consensus 133 ---d~~~~~~~i~~~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~-g~~vvvDnT~atP----~~~~Pl-----~~G 196 (394)
T d1e5ea_ 133 ---IPGEVKKHMKPNTKIVYFETPANPTLKIID---MERVCKDAHSQE-GVLVIADNTFCSP----MITNPV-----DFG 196 (394)
T ss_dssp ---STTHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTST-TCEEEEECTTTCT----TTCCGG-----GGT
T ss_pred ---CHHHHHHhhcccccEEEEeccCCcceeeeh---hhhhhhcccccc-CeEEEecCcccCc----ccCCch-----hcC
Confidence 678899999999999999999999999999 8888887764 6 8999999997531 111121 234
Q ss_pred ceEEEeccccccc-cccceeEEEEcChhHHHHHHhh--hhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHH
Q 018665 174 RTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 250 (352)
Q Consensus 174 ~~i~~~s~sK~~g-~~g~~~g~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
-++++.|.+|.++ ....-.|.++++.+.+...+.. +...+..++++....+...+++ +.-+.++..++..
T Consensus 197 aDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T-------L~lRm~r~~~nA~ 269 (394)
T d1e5ea_ 197 VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLST-------LNIRMKAESENAM 269 (394)
T ss_dssp CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHH
T ss_pred CCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchh-------HHHHHHHHHHHHH
Confidence 5599999999994 3345577788888877765432 3345667888888888888766 5566667777888
Q ss_pred HHHHHhcccCCcee
Q 018665 251 FLVKSFGELEGVKM 264 (352)
Q Consensus 251 ~l~~~l~~~~g~~~ 264 (352)
.+.+.|++.|.+..
T Consensus 270 ~lA~~L~~hp~V~~ 283 (394)
T d1e5ea_ 270 KVAEYLKSHPAVEK 283 (394)
T ss_dssp HHHHHHHTCTTEEE
T ss_pred HHHHHHhhcCCccE
Confidence 99999998877643
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.84 E-value=5e-19 Score=158.95 Aligned_cols=288 Identities=15% Similarity=0.112 Sum_probs=188.7
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc----------CCCCEEEecCCCCCChHHHHHhc-C---CeEEEecccCC--CCcccC
Q 018665 35 TPDQILVSNGAKQSILQAVLAVC----------SPGDEVIIPAPFWVSYPEMARIA-D---ATPVILPTRIS--ENFLLD 98 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~----------~~~~~vl~~~~~~~~~~~~~~~~-g---~~v~~i~~~~~--~~~~~d 98 (352)
..+.+.++.+++++...+++... .....++.....|++........ + .+....|.... ....-+
T Consensus 95 ~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (404)
T d1z7da1 95 GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDD 174 (404)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTC
T ss_pred ccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccch
Confidence 45789999999999998887642 12236777776666544222211 1 00001110000 000125
Q ss_pred HHHHHhhccC-CeeEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 99 PKVLESKLTE-KSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 99 ~~~l~~~l~~-~~~~i~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
.+.++..+++ ++.+|++...+...|.. +|++.+++|.++|+++ |+++|+||++.++...|.. .......-.+|
T Consensus 175 ~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~-g~llI~DEV~tGfgRtG~~-~~~e~~gv~PD--- 249 (404)
T d1z7da1 175 LEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY-NVLFVADEVQTGLGRTGKL-LCVHHYNVKPD--- 249 (404)
T ss_dssp HHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGTCCCS---
T ss_pred HHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEcCccCCCccccc-ccccccCCCCC---
Confidence 6777777754 66777776667777755 5677899999999999 9999999999988766642 22222222122
Q ss_pred EEecccccccccc-ceeEEEEcChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 255 (352)
Q Consensus 177 ~~~s~sK~~g~~g-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 255 (352)
+.+++|.+| +| .++|.+++++++.+.+.......+++.|+++++++.+.|+.... +...+...+.-....+.+.+.
T Consensus 250 -ivt~gK~l~-gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~-~~~~~~~~~~~~~~~~~l~~~ 326 (404)
T d1z7da1 250 -VILLGKALS-GGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN-EKLCENAEKLGGPFLENLKRE 326 (404)
T ss_dssp -EEEECGGGG-TTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEccccc-CCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhc-chhhhhhccchhHHHHHHHHH
Confidence 557889998 55 89999999999988877766677788999999999999875221 344445545555566666777
Q ss_pred hcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHH
Q 018665 256 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQ 333 (352)
Q Consensus 256 l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~ 333 (352)
+++.+.+.-+... |.++.+.+.+.. .+..++.+.+.++ |+.+.+. ..+.+|+.++. ++++|+
T Consensus 327 ~~~~~~v~~vrg~-Gl~~~i~~~~~~----------~~~~~~~~~l~~~-Gl~~~~~----~~~~ir~~Ppl~it~~~id 390 (404)
T d1z7da1 327 LKDSKIVRDVRGK-GLLCAIEFKNEL----------VNVLDICLKLKEN-GLITRDV----HDKTIRLTPPLCITKEQLD 390 (404)
T ss_dssp HTTCTTEEEEEEE-TTEEEEEECTTT----------CCHHHHHHHHHHT-TEECCEE----TTTEEEECCCTTCCHHHHH
T ss_pred HhcCCCeEEEEee-CcEEEEEEcCCc----------ccHHHHHHHHHhC-CeEEecC----CCCEEEEECCcCCCHHHHH
Confidence 7776544444333 445666665431 1566788888876 9998664 25789998775 999999
Q ss_pred HHHHHHHHHHhhh
Q 018665 334 AAVERIKKGLLTL 346 (352)
Q Consensus 334 ~~~~~l~~~~~~~ 346 (352)
+++++|+++++++
T Consensus 391 ~~~~~l~~alk~~ 403 (404)
T d1z7da1 391 ECTEIIVKTVKFF 403 (404)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.84 E-value=6.7e-19 Score=160.17 Aligned_cols=316 Identities=13% Similarity=0.079 Sum_probs=205.4
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhcCC
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 82 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~g~ 82 (352)
.|+.++...+++ +.+|++++ .+..+++++|+.|+..++.+++++||.|+.... +..+.......|.
T Consensus 70 ~Y~~dpt~~~lE------~~~a~l~G-------~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~~~~i~~~g~ 135 (456)
T d1c7ga_ 70 AYAGSENFYHLE------KTVKELFG-------FKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTTRFHQEKNGA 135 (456)
T ss_dssp CSSSCHHHHHHH------HHHHHHHC-------CSEEEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHHHHHHHHTTE
T ss_pred hccCCchHHHHH------HHHHHHhC-------CCeEEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHHHHHHHHcCc
Confidence 477777777888 99999984 778899999999999999999999998887655 4455566677888
Q ss_pred eEEEecccC--------CCCcccCHHHHHhhccC----CeeEEEEcCCCCC-cccCCCHHHHHHHHHHHHhCCCEEEEec
Q 018665 83 TPVILPTRI--------SENFLLDPKVLESKLTE----KSRLLILCSPSNP-TGSVYPKNLLDEIARIVAKHPRLLVLSD 149 (352)
Q Consensus 83 ~v~~i~~~~--------~~~~~~d~~~l~~~l~~----~~~~i~i~~p~np-tG~~~~~~~l~~l~~~~~~~~~~~livD 149 (352)
....+..+. ...+.+|+++|++.+++ .+.++++.+++|+ .|++++.+++++|.++|++| |+++++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~-~~~~~~D 214 (456)
T d1c7ga_ 136 TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTY-GIKIFYD 214 (456)
T ss_dssp EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH-TCCEEEE
T ss_pred eeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHc-CCEEEEE
Confidence 777665431 12356899999999963 4567888999886 56888999999999999999 9999999
Q ss_pred ccccccc-------cCCCCccccccCCCC--CCceEEEeccccccccccceeEEEEcC-hhHHHHHHhhhhcc-----cc
Q 018665 150 EIYEHII-------YAPATHTSFASLPGM--WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQF-----TS 214 (352)
Q Consensus 150 ~~~~~~~-------~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~g~~g~~~g~l~~~-~~~~~~~~~~~~~~-----~~ 214 (352)
+++.... ..+....+...+... ..-.++..|.+|.++.+ ..|+++.+ +.+.++++...... ..
T Consensus 215 ~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~--~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g 292 (456)
T d1c7ga_ 215 ATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVN--IGGFLCMNDEEMFSAAKELVVVYEGMPSYG 292 (456)
T ss_dssp CTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS--SCEEEEESCHHHHHHHHHHHHHHTCCTTTT
T ss_pred cchhhcchhhhcccccccCCCChhhhccccccccccEEEecccccccc--ceeEEEcCCHHHHHHHHHhccccCCCcccc
Confidence 9976311 011111121111000 01226778999998633 24777654 45666665432111 12
Q ss_pred CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCC-cccCCCCCCC
Q 018665 215 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGKIEN 293 (352)
Q Consensus 215 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~ 293 (352)
+.+.....+++..+.... ..++ .++..++.+++.+.|++. |+.++.+.++..++++....... ....+ .
T Consensus 293 ~~~~~~~~a~a~~l~e~~-~~~~----l~~r~~~~~~L~e~L~~~-g~~vv~p~g~~~v~vda~~~~~~i~~~~~----~ 362 (456)
T d1c7ga_ 293 GLAGRDMEAMAIGLREAM-QYEY----IEHRVKQVRYLGDKLREA-GVPIVEPTGGHAVFLDARRFCPHLTQDQF----P 362 (456)
T ss_dssp TCCHHHHHHHHHHHHHHT-CHHH----HHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHCTTSCGGGC----H
T ss_pred hhhHHHHHHHHHHHHHhc-CHHH----HHHHHHHHHHHHHHHHhc-cCCcccCCCCcceeEechhhccCCCcccc----c
Confidence 334444444444333211 1222 233344557888888887 88888888888777653211100 00011 3
Q ss_pred hHHHHHHHHHccCEEeccCCCC-------------CCCCeEEEEeec---CHHHHHHHHHHHHHHHhh
Q 018665 294 SESLCRYLLDKAQVALVPGDAF-------------GDDTCIRISYAA---SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 294 ~~~~~~~l~~~~gi~i~~g~~~-------------~~~~~iRi~~~~---~~~~l~~~~~~l~~~~~~ 345 (352)
..++...+..+.||...+.+.+ .....+|++++. |++++|..++.|+++.++
T Consensus 363 ~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~ 430 (456)
T d1c7ga_ 363 AQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp HHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence 5566677776678865332111 112469999874 899999999999999864
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.84 E-value=1.2e-18 Score=155.58 Aligned_cols=286 Identities=18% Similarity=0.256 Sum_probs=197.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcc
Q 018665 18 SFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 18 ~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+|++.+|++++ .++.+.++++|.|+..++.++ +++||+|++|..+|.....++...|.+++++++++ .++.
T Consensus 38 ~fE~~~a~~~g-------~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~-~~~~ 109 (384)
T d1b9ha_ 38 SFEREFAAHHG-------AAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDA-ATYN 109 (384)
T ss_dssp HHHHHHHHHTT-------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCC
T ss_pred HHHHHHHHHHC-------cCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccccccccccccccccccccccccc-cccc
Confidence 45699999974 668899999999999999997 68999999999999999999999999999999874 5567
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc-CCCCccccccCCCCCCce
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-APATHTSFASLPGMWERT 175 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~-~~~~~~~~~~~~~~~~~~ 175 (352)
+|++.+++.+.+++++|+ +.+..|...+ +.++.++|+++ ++++|+|.+++.... .|. ...... +
T Consensus 110 ~d~~~~~~~i~~~tk~i~---~~~~~g~~~d---~~~i~~~~~~~-~i~lieD~a~a~ga~~~g~---~~g~~g---~-- 174 (384)
T d1b9ha_ 110 LDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAKISADT-GVPLLQDAAHAHGARWQGK---RVGELD---S-- 174 (384)
T ss_dssp BCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHH-TCCBCEECTTCTTCEETTE---EGGGSS---S--
T ss_pred cchhhhcccccccccccc---cccccccccc---cccchhhhhhh-hhhhhhhhceecccccCCE---ecCccc---c--
Confidence 899999999999999987 4566678888 88999999999 999999999986432 221 111111 2
Q ss_pred EEEec--cccccccccceeEEEEc-ChhHHHHHHhhhhc-----------------cccCCChHHHHHHHHHhcccCCCh
Q 018665 176 LTVNG--FSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ-----------------FTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 176 i~~~s--~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
+.+.| .+|.++ .|. .|++++ ++++.+.++..... +.+.++.+..+.+...|+
T Consensus 175 ~~~~Sf~~~K~i~-~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~------ 246 (384)
T d1b9ha_ 175 IATFSFQNGKLMT-AGE-GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLA------ 246 (384)
T ss_dssp CEEEECCTTSSSC-SSS-CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHT------
T ss_pred cceeccccccccc-ccc-cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhh------
Confidence 44444 479886 443 466554 56666665544321 122344544443443343
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCC------CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEe
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEP------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 309 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i 309 (352)
.+++..++-+++..++.+.|+.++++..... ...++..+.++.... ..-+++.+.|.++ ||.+
T Consensus 247 -~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~Rd~l~~~L~~~-GI~~ 315 (384)
T d1b9ha_ 247 -RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE---------ERRNALVDRLVEA-GLPA 315 (384)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH---------HHHHHHHHHHHHT-TCCE
T ss_pred -hcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceeccccc---------ccHHHHHHHHHHC-CCCe
Confidence 3455566667778888888888777654321 112223334443210 0234688888865 8987
Q ss_pred ccCCC----------CCC-------------------CCeEEEEeec--C-HHHHHHHHHHHHHHHhh
Q 018665 310 VPGDA----------FGD-------------------DTCIRISYAA--S-LTTLQAAVERIKKGLLT 345 (352)
Q Consensus 310 ~~g~~----------~~~-------------------~~~iRi~~~~--~-~~~l~~~~~~l~~~~~~ 345 (352)
.+... ++. ...+.|.+.. + ++|+++.++.|++++++
T Consensus 316 ~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 316 FAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp EECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred eeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 65321 000 1257777765 5 57999999999999875
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.84 E-value=1.5e-19 Score=165.97 Aligned_cols=314 Identities=12% Similarity=0.025 Sum_probs=184.8
Q ss_pred ChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHHhc-CCeEEEec
Q 018665 10 TLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA-DATPVILP 88 (352)
Q Consensus 10 ~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~~~-g~~v~~i~ 88 (352)
..+++ +.+|++++ ..+.+++++|+|+++..++.+++++||.|+++..+|.+....+... +..+.+..
T Consensus 68 i~eae------~~~A~~~g------a~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~ 135 (462)
T d1c4ka2 68 AVAAE------KHAARVYN------ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQ 135 (462)
T ss_dssp HHHHH------HHHHHHTT------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEEC
T ss_pred HHHHH------HHHHHHhC------CCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeee
Confidence 34566 99999986 3344455566677777888889999999999999999988766543 44444443
Q ss_pred c--cCCCC-c-----ccCHHHH---------HhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccc
Q 018665 89 T--RISEN-F-----LLDPKVL---------ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 151 (352)
Q Consensus 89 ~--~~~~~-~-----~~d~~~l---------~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~ 151 (352)
. +..+. . .++.+.+ +++...++..+++...+|..|.+.| +++|+++|+++ |+++++|++
T Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~-g~~l~vD~A 211 (462)
T d1c4ka2 136 TNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHL-CDYIEFDSA 211 (462)
T ss_dssp EEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGG-BSEEEEECT
T ss_pred cccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHc-CCEEEEech
Confidence 3 22111 1 1232222 2333445666666677777999999 99999999999 999999999
Q ss_pred ccccccC-CCCccccccCC----CCCCceEEEeccccccccccceeEEEEcChhHH---------HHHHhh-hhccccCC
Q 018665 152 YEHIIYA-PATHTSFASLP----GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV---------AACNKI-QSQFTSGA 216 (352)
Q Consensus 152 ~~~~~~~-~~~~~~~~~~~----~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~---------~~~~~~-~~~~~~~~ 216 (352)
++..... +....+..... ...+.++++.|+||.+|..+ ..+++..+...+ ..+.+. ....+.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~-~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp 290 (462)
T d1c4ka2 212 WVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS-QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSP 290 (462)
T ss_dssp TCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT-TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSC
T ss_pred hhccccccCcCCcchhhccccccccCCccEEEEecCccccccc-ceEEEEeccccccccchhhhHHHHHHhhhhcccCCc
Confidence 9853321 11111211111 12345799999999997443 334443433322 122221 22334456
Q ss_pred ChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecC----------------------------C-
Q 018665 217 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE----------------------------P- 267 (352)
Q Consensus 217 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~----------------------------~- 267 (352)
+......+..+... +..+..+++.++..++.+.+++++.++++..... +
T Consensus 291 ~~~~~asl~~a~~~--~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (462)
T d1c4ka2 291 FYPMYAALDVNAAM--QEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKG 368 (462)
T ss_dssp CHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTT
T ss_pred hHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCc
Confidence 66655555554432 1244556666666677777777776553321100 0
Q ss_pred ----------CCce-----EEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHH
Q 018665 268 ----------QGAF-----YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLT 330 (352)
Q Consensus 268 ----------~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~ 330 (352)
...+ -+.+..++.......--.....+..+.+.|.+ +||.+... ....+|++++. |++
T Consensus 369 ~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~-~gI~~e~~----~~~~i~~~~s~~~T~e 443 (462)
T d1c4ka2 369 AKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRD-HGIIPEKS----DLNSILFLMTPAETPA 443 (462)
T ss_dssp CTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHH-TTCCCSEE----CSSEEEEECCTTCCHH
T ss_pred chhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHH-cCCeeecc----CCCeEEEEecCCCCHH
Confidence 0000 02233222110000000001156788887765 68865332 46789999987 999
Q ss_pred HHHHHHHHHHHHHhhhC
Q 018665 331 TLQAAVERIKKGLLTLR 347 (352)
Q Consensus 331 ~l~~~~~~l~~~~~~~~ 347 (352)
|++++++.|+++.+.+.
T Consensus 444 did~li~aL~ei~r~~~ 460 (462)
T d1c4ka2 444 KMNNLITQLLQLQRLIE 460 (462)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887653
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.83 E-value=6.1e-19 Score=159.43 Aligned_cols=300 Identities=14% Similarity=0.119 Sum_probs=185.3
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc--CCCCEEEecCCCCCChHHHH--------HhcCC--------
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMA--------RIADA-------- 82 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~~~~vl~~~~~~~~~~~~~--------~~~g~-------- 82 (352)
..+++.+.... ...+.+++++++++|++.+++... ....+|+.....|++....+ ...+.
T Consensus 95 ~~la~~~~~~~--~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~ 172 (427)
T d2gsaa_ 95 NVLAEMVNDAV--PSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPK 172 (427)
T ss_dssp HHHHHHHHHHS--TTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCH
T ss_pred HHHHHHHHhhC--CccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcc
Confidence 45555555211 145789999999999999998753 24467888888777643211 11221
Q ss_pred ----eEEEecccCCCCcccCHHHHHhhccC---CeeEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 83 ----TPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 83 ----~v~~i~~~~~~~~~~d~~~l~~~l~~---~~~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+...++ ..|++.+++.+++ ++.++++...+...|. .+|++.+++|.++|++| |+++|+||++.+
T Consensus 173 ~~~~~~~~~~-------~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-~~llI~DEv~tG 244 (427)
T d2gsaa_ 173 KTTANTLTTP-------YNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH-DALLVFDEVMTG 244 (427)
T ss_dssp HHHTTEEEEC-------TTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTB
T ss_pred cCccceeccC-------cchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHh-ceeeeecccccc
Confidence 111111 1378899988863 6677777666666675 46778999999999999 999999999998
Q ss_pred cccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh---hhccccCCChHHHHHHHHHhccc
Q 018665 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLG 231 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~ 231 (352)
+ ..|.. .........+ -+.+++|.+| +|.++|.+++++++++.+... ....+++.|+++.+++.++++..
T Consensus 245 ~-r~g~~-~~~~~~gi~P----Di~~~gK~lg-gG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i 317 (427)
T d2gsaa_ 245 F-RIAYG-GVQEKFGVTP----DLTTLGKIIG-GGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELL 317 (427)
T ss_dssp T-TTBTT-CHHHHTTCCC----SEEEECGGGG-TTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred c-eeccc-chHHhcCCCH----HHHhhhhccC-CCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHh
Confidence 7 44432 2222222212 2556779998 889999999999998876542 33456789999999999998863
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhcccCCcee-cCCCCceEEEeecCCccCCcccCCCCCCC---hHHHHHHHHHccCE
Q 018665 232 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIEN---SESLCRYLLDKAQV 307 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~gi 307 (352)
.. .+..+++.+.-++.++.+.+..++. +... +...++.+ .+.+........... ...+ ...+...++++ ||
T Consensus 318 ~~-~~l~~~~~~~g~~l~~~L~~l~~~~-~~~~~v~~~ggm~-~i~~~~~~v~~~~~~-~~~d~~~~~~~~~~ll~~-Gv 392 (427)
T d2gsaa_ 318 RQ-PGTYEYLDQITKRLSDGLLAIAQET-GHAACGGQVSGMF-GFFFTEGPVHNYEDA-KKSDLQKFSRFHRGMLEQ-GI 392 (427)
T ss_dssp TS-TTHHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEETTEE-EEESSSCCCCSHHHH-TTSCHHHHHHHHHHHHHT-TE
T ss_pred hh-hhHHhhhhHHHHHHHHHHHHHHhhc-CCCcEEcccCCeE-EEEEeccCCCCHHHh-hcccHHHHHHHHHHHHHC-CE
Confidence 22 2334444444444444444444444 3222 22233432 222211100000000 0002 23566777866 99
Q ss_pred EeccCCCCCCCCeEEEEeecCHHHHHHHHHHHHHHHhhh
Q 018665 308 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 308 ~i~~g~~~~~~~~iRi~~~~~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.|+.. ..+-+++..+++||++++++|+++++++
T Consensus 393 ~l~p~~~----~~~~~~l~~Te~dId~~l~al~~al~~L 427 (427)
T d2gsaa_ 393 YLAPSQF----EAGFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp ECCSSTT----SCEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred EECCCCC----cceeCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 9988542 2223555669999999999999999763
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.83 E-value=1.1e-20 Score=164.82 Aligned_cols=296 Identities=14% Similarity=0.068 Sum_probs=181.7
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH--HHHhc
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE--MARIA 80 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~--~~~~~ 80 (352)
.|++++..+++| +.+|++++ .++++|++|+|+|++++.++..+..+++.+++..+.+..+.. .....
T Consensus 30 ~y~~~~~~~~lr------~~ia~~~g-----~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (340)
T d1svva_ 30 GYGQDSHCAKAA------RLIGELLE-----RPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEAT 98 (340)
T ss_dssp STTCSHHHHHHH------HHHHHHHT-----CTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHT
T ss_pred CCCCCHHHHHHH------HHHHHHhC-----CCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeeccccccc
Confidence 366777778899 99999997 677899999999999999999999999999988887765542 22233
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhcc------CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLT------EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 154 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~------~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~ 154 (352)
+............ .+.+...+... .....++++...|+.|...+.+++..+...|+++ +.++++|+++..
T Consensus 99 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~d~a~~~ 174 (340)
T d1svva_ 99 GHKVVTAPCPDGK---LRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEH-GLYLFLDGARLA 174 (340)
T ss_dssp TCCEEEECCTTSC---CCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHH-TCEEEEECTTHH
T ss_pred ceeeeeccccccc---ccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccc-cceeeeecccee
Confidence 3333333322111 22222222221 2334455555555667777888899999999999 999999999875
Q ss_pred cccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhhhcccc--CCChHHHHHHHHHhcccC
Q 018665 155 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS--GASSISQKAGVAALGLGY 232 (352)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~ 232 (352)
................ ....+...+..|.. .+.+.++.................... .......+++...++
T Consensus 175 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~--- 248 (340)
T d1svva_ 175 SALSSPVNDLTLADIA-RLTDMFYIGATKAG--GMFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMK--- 248 (340)
T ss_dssp HHHTSTTCCCCHHHHH-HHCSEEEEECTTTT--CSSCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTS---
T ss_pred eeeccccccccccccc-ccceeeecCCcccc--ccccccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhh---
Confidence 4332221111111000 11224444444543 334455555555443333322222222 222222222222332
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHcc---CEEe
Q 018665 233 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA---QVAL 309 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---gi~i 309 (352)
........++...++.++.+.|+.. |+.+..|..++++++.+++ +..+.|.++. ++.+
T Consensus 249 --~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~~~~~v~~~~~~----------------~~~~~l~~~~~~~~~~~ 309 (340)
T d1svva_ 249 --DNLFFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQLFPILEN----------------TMIAELNNDFDMYTVEP 309 (340)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEECBEEEH----------------HHHHHHTTTEECEEEEE
T ss_pred --hhHHHHHHHHHHHHHhhhHHHHhcC-CCeeecCCCceEEEEeCCH----------------HHHHHHHHhhhhhcccc
Confidence 3444555667777888888888886 9998877777778777643 3445555442 3333
Q ss_pred ccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHH
Q 018665 310 VPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 342 (352)
Q Consensus 310 ~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~ 342 (352)
.+ ..++++|++++. |++|||++++.|+++
T Consensus 310 ~~----~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 310 LK----DGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp ET----TTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred cC----CCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 33 236789999876 999999999999873
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=2.4e-18 Score=151.67 Aligned_cols=204 Identities=11% Similarity=0.090 Sum_probs=155.4
Q ss_pred hHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHHH----hcCCeEEEecccCCCCc
Q 018665 20 VQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENF 95 (352)
Q Consensus 20 ~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~~----~~g~~v~~i~~~~~~~~ 95 (352)
+++++++- ..+..++++||++|+..+ ..++++||+|++....|.+....++ ..|.++.+++
T Consensus 61 E~~la~LE-------~~~~a~~~sSGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~------- 125 (393)
T d1n8pa_ 61 ERAVAALE-------NAQYGLAFSSGSATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN------- 125 (393)
T ss_dssp HHHHHHHT-------TCSEEEEESCHHHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES-------
T ss_pred HHHHHHHh-------CCceEEEecCchhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEee-------
Confidence 37777774 467778899999999754 5677889999999999998876665 4677777664
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHH----hCCCEEEEecccccccccCCCCccccccCCCC
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA----KHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 171 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~----~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
.+.+++++.+++++++|++..|.||+..+.+ +++++++|+ ++ |+++|||+++..... ..++ +
T Consensus 126 -~~~~~~~~~i~~~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~-g~~lvVDnT~atP~~----~~Pl-----~ 191 (393)
T d1n8pa_ 126 -DLLNDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQ-DVILVVDNTFLSPYI----SNPL-----N 191 (393)
T ss_dssp -SHHHHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTT-TCEEEEECTTTHHHH----CCGG-----G
T ss_pred -cchHHHHHHhhhhcceeEecCcchhhhhccc---hhhhhhhhhhhcccC-CceEEEecCccCccc----CCch-----h
Confidence 1457899999999999999999999999999 888888888 78 999999999764111 1111 1
Q ss_pred CCceEEEecccccccc-ccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Q 018665 172 WERTLTVNGFSKAFAM-TGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 249 (352)
Q Consensus 172 ~~~~i~~~s~sK~~g~-~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (352)
++-++++.|.+|.++. ...-.|.++. ++++.++++......+..++++....+...+++ +..+.++..++.
T Consensus 192 ~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T-------l~lR~~~~~~nA 264 (393)
T d1n8pa_ 192 FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-------LHLRVRQAALSA 264 (393)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHH
T ss_pred hCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcc-------hhhHHHHHHHHH
Confidence 3455999999999943 3355677664 456778888777777778899888888877765 455566667777
Q ss_pred HHHHHHhccc
Q 018665 250 DFLVKSFGEL 259 (352)
Q Consensus 250 ~~l~~~l~~~ 259 (352)
..+.+.|+..
T Consensus 265 ~~lA~~L~~~ 274 (393)
T d1n8pa_ 265 NKIAEFLAAD 274 (393)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHHhc
Confidence 7888888653
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.7e-18 Score=154.94 Aligned_cols=283 Identities=11% Similarity=0.055 Sum_probs=189.5
Q ss_pred CCCcEEEeCChHHHHHHHHHHhc-------CCCCEEEecCCCCCChH-HHHHhcCC-------------eEEEecccCC-
Q 018665 35 TPDQILVSNGAKQSILQAVLAVC-------SPGDEVIIPAPFWVSYP-EMARIADA-------------TPVILPTRIS- 92 (352)
Q Consensus 35 ~~~~i~~~~g~~~a~~~~~~~l~-------~~~~~vl~~~~~~~~~~-~~~~~~g~-------------~v~~i~~~~~- 92 (352)
.-+.+++++++++|++.+++... ....+|+.....|++.. .++...+. .....|....
T Consensus 102 ~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
T d1s0aa_ 102 PLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSR 181 (429)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSB
T ss_pred CcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccc
Confidence 45789999999999998887642 22357887777766544 33332221 1112221110
Q ss_pred C---CcccCHHHHHhhc---cCCeeEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccc
Q 018665 93 E---NFLLDPKVLESKL---TEKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 164 (352)
Q Consensus 93 ~---~~~~d~~~l~~~l---~~~~~~i~i~~p-~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~ 164 (352)
. ....+++.+++.+ .+++.+++++.. ++..|. .+|++.+++|.++|+++ |+++|+||++.++...|... .
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfGRtG~~~-~ 259 (429)
T d1s0aa_ 182 MDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE-GILLIADEIATGFGRTGKLF-A 259 (429)
T ss_dssp C-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSS-G
T ss_pred cccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHc-Ccceehhhcccccccccccc-c
Confidence 1 1112344544444 346777777765 355554 57889999999999999 99999999999987776432 2
Q ss_pred cccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhhh-----hccccCCChHHHHHHHHHhcccCCChHHHH
Q 018665 165 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVS 239 (352)
Q Consensus 165 ~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 239 (352)
.....-. .-+.+++|.++.++.++|.+++++++.+.+.... ...+++.|+++.+++.+.|+.-. -+
T Consensus 260 ~~~~~v~----PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~-----~~ 330 (429)
T d1s0aa_ 260 CEHAEIA----PDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE-----SG 330 (429)
T ss_dssp GGGGTCC----CSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH-----TC
T ss_pred cccceec----ccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccc-----cc
Confidence 2222211 2256678999735589999999999998876432 34578899999999999998621 12
Q ss_pred HHHHHHHHHHHHHHHHhccc---CCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC
Q 018665 240 KMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 316 (352)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~ 316 (352)
++..+.++.-+++.+.|+++ +.+.-+. ..|.+..+++.... +...+.+.++++ |+.+.+.
T Consensus 331 ~~~~~~~~~g~~l~~~L~~l~~~~~v~~vr-g~Gl~~~~e~~~~~-----------~~~~~~~~~~~~-Gl~~~~~---- 393 (429)
T d1s0aa_ 331 DWQQQVADIEVQLREQLAPARDAEMVADVR-VLGAIGVVETTHPV-----------NMAALQKFFVEQ-GVWIRPF---- 393 (429)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGCTTEEEEE-EETTEEEEEESSCB-----------CHHHHHHHHHHT-TEECCCB----
T ss_pred cccchhhHHHHHHHHHHHHhccCCceEEEe-ecccEEEEEecCcc-----------cHHHHHHHHHHC-CcEEEec----
Confidence 34445555555666666543 3343332 23555667765542 677899998876 9998774
Q ss_pred CCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 317 DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 317 ~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
.+.+|++++. +++||++++++|++++++.
T Consensus 394 -g~~i~~~Ppl~it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 394 -GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp -TTEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred -CCEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 4689999876 9999999999999998764
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=4e-19 Score=162.27 Aligned_cols=307 Identities=19% Similarity=0.182 Sum_probs=188.8
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHH-HHHHHHHHh---cCCCCEEEecCCCCCChHHHHHhcCCeEEEeccc-CCCC
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQ-SILQAVLAV---CSPGDEVIIPAPFWVSYPEMARIADATPVILPTR-ISEN 94 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~-a~~~~~~~l---~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~-~~~~ 94 (352)
..+.+++. ..|.+. .....+++++++ ++..++.++ ..+++.|+++...|.++..++...|.+++.++.. .+.+
T Consensus 97 ~~~~~~~~~l~g~~~-~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~~ 175 (445)
T d3bc8a1 97 NSLVLNVIKLAGVHS-VASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDE 175 (445)
T ss_dssp HHHHHHHHHHHTCTT-CCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTE
T ss_pred HHHHHHHHHHhCCCc-ccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCcc
Confidence 55555555 445442 345566666665 444444443 3456899999999999999999999999988753 2456
Q ss_pred cccCHHHHHhhcc----CCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC-CCCccccccCC
Q 018665 95 FLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA-PATHTSFASLP 169 (352)
Q Consensus 95 ~~~d~~~l~~~l~----~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~-~~~~~~~~~~~ 169 (352)
+.+|+++|+++++ +++.+|+++.|++++|.+.| +++|+++|+++ |+++++|++++.+... ..........
T Consensus 176 ~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~-~~~l~vD~a~~~~~~~~~~~~~~~~~~- 250 (445)
T d3bc8a1 176 LRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANY-DIPHVVNNAYGLQSSKCMHLIQQGARV- 250 (445)
T ss_dssp EECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHHHHHH-
T ss_pred cccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh---HHHHHHHHHHh-CCcEEEEccchhhhhhccccchhccCc-
Confidence 7899999999885 36788899999999999999 99999999999 9999999998753210 0000111111
Q ss_pred CCCCceEEEeccccccccccceeEEEEc-ChhHHHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Q 018665 170 GMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 248 (352)
Q Consensus 170 ~~~~~~i~~~s~sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 248 (352)
.+.+++..|.+|.++ .+.+.|+++. +...++.+......+..+.....+.+....+. .....+.......+
T Consensus 251 --~~vd~~~~s~hK~~~-~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~ 322 (445)
T d3bc8a1 251 --GRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG-----CSGYRKLLKERKEM 322 (445)
T ss_dssp --SCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred --CCcceEEecCccccc-cCCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHh-----hhcchhhHHHHHHH
Confidence 123488899999886 4445666665 45566655543322222222222222222222 34455555556666
Q ss_pred HHHHHHHhccc---CCceecC-CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEecc----CC-------
Q 018665 249 RDFLVKSFGEL---EGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP----GD------- 313 (352)
Q Consensus 249 ~~~l~~~l~~~---~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~----g~------- 313 (352)
.+++.+.|+++ .+..+.. +......++.+....... ..+..++...|.+. ||.... +.
T Consensus 323 ~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~------~~~~~~l~~~L~~~-gI~~~~~~~~~~~~~i~~~ 395 (445)
T d3bc8a1 323 FVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHH------DKAVTQLGSMLFTR-QVSGARAVPLGNVQTVSGH 395 (445)
T ss_dssp HHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSS------SCHHHHHHHHHHHT-TCCSCEEECSCCEEEETTE
T ss_pred HHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccC------CCCHHHHHHHHHHc-CCCcceeeccccccchhhh
Confidence 66666666543 1444332 222333333332211110 01455677777754 653211 10
Q ss_pred ---CCC------CCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCC
Q 018665 314 ---AFG------DDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 348 (352)
Q Consensus 314 ---~~~------~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~ 348 (352)
.++ ...++|++++. ++||++++++.|+++++++++
T Consensus 396 ~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 396 TFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp EEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 011 12468998886 889999999999999998864
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=9.6e-19 Score=158.77 Aligned_cols=313 Identities=12% Similarity=0.014 Sum_probs=209.6
Q ss_pred HHHHHHHH-hcCCCCCC---CcEEEeCChHHHHHHHHHHhcC------------CCCEEEecCCCCCChHHHHHhcCCeE
Q 018665 21 QQFVINLK-ENGLSYTP---DQILVSNGAKQSILQAVLAVCS------------PGDEVIIPAPFWVSYPEMARIADATP 84 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~---~~i~~~~g~~~a~~~~~~~l~~------------~~~~vl~~~~~~~~~~~~~~~~g~~v 84 (352)
..+.+++. -+|.+... ..=.+|+|+|+|+..++.+... ....++++...|.++..+++.+|+++
T Consensus 96 ~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~ 175 (450)
T d1pmma_ 96 LRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVEL 175 (450)
T ss_dssp HHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCc
Confidence 66666666 44543221 1247999999999988876421 12357778888999999999999999
Q ss_pred EEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHH---HHHhCCCEEEEeccccccccc--CC
Q 018665 85 VILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR---IVAKHPRLLVLSDEIYEHIIY--AP 159 (352)
Q Consensus 85 ~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~---~~~~~~~~~livD~~~~~~~~--~~ 159 (352)
+.+++++ .++.+|++.|++++++++++|+.+..++.||.+-|.+++.++++ +|+++ |++++||.+++++.. ..
T Consensus 176 ~~v~~~~-~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~-~i~lHVDAA~gG~~~p~~~ 253 (450)
T d1pmma_ 176 REIPMRP-GQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGI-DIDMHIDAASGGFLAPFVA 253 (450)
T ss_dssp EECCCBT-TBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCC-CCCEEEECTTGGGTHHHHC
T ss_pred eEeeecC-CCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhcc-CcEEEeehhhccceeeeec
Confidence 9999875 45789999999999999999999999999999999666555544 36789 999999999986431 11
Q ss_pred CCccccccCCCCCCceEEEeccccccccccceeEEEEcChh-HHHHHHhh--------hhcccc--CCChHHHHHHHHHh
Q 018665 160 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKI--------QSQFTS--GASSISQKAGVAAL 228 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~-~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~l 228 (352)
........+ ..-+.+..|.||.++ ...++|+++.+.+ ........ ...++. +-+......+...+
T Consensus 254 ~~~~~~~~~---~~aDSi~~s~HK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l 329 (450)
T d1pmma_ 254 PDIVWDFRL---PRVKSISASGHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEF 329 (450)
T ss_dssp TTCCCSTTS---TTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHH
T ss_pred hhhhhhhcc---cceeEeecChhhccC-CCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHH
Confidence 111111111 245578899999876 5567899887543 22211100 001111 12222222223222
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC---C-CceEEEeecCCccCCcccCCCCCCChHHHHHHHHHc
Q 018665 229 GLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---Q-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~---~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (352)
.. ...+.+++..++..++.+++.+.|++.++++++.+ . ....+.+++.+.. ..++ +..++.+.|.++
T Consensus 330 ~~--~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~---~~~~----~~~~l~~~L~~~ 400 (450)
T d1pmma_ 330 LR--LGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE---DPGY----TLYDLSERLRLR 400 (450)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTC---CCSS----CHHHHHHHHHTT
T ss_pred hh--hhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcc---cCCC----CHHHHHHHHHHc
Confidence 21 13677889999999999999999999988888732 2 2223445553321 1111 677899998865
Q ss_pred cCEEeccCCC---CCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhhCCC
Q 018665 305 AQVALVPGDA---FGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 349 (352)
Q Consensus 305 ~gi~i~~g~~---~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~~~~ 349 (352)
|..+..... ......+|+.+.. ++++++++++.|+++++.++..
T Consensus 401 -Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~~ 449 (450)
T d1pmma_ 401 -GWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDH 449 (450)
T ss_dssp -TCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 866532211 1123479999876 8899999999999999987643
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.82 E-value=1.6e-19 Score=165.80 Aligned_cols=320 Identities=13% Similarity=0.076 Sum_probs=196.5
Q ss_pred CccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCC-------CEEEecCCCCCChH
Q 018665 2 QFVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-------DEVIIPAPFWVSYP 74 (352)
Q Consensus 2 ~~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~-------~~vl~~~~~~~~~~ 74 (352)
.+|+++++..+++ +.++++++ .+.+++++||++|+..+++++++++ ..++...+.+..+.
T Consensus 69 ~~y~~~~~~~~le------~~~a~l~g-------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~ 135 (465)
T d1ax4a_ 69 EAYAGSRNYYDLK------DKAKELFN-------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTA 135 (465)
T ss_dssp CCSSSCHHHHHHH------HHHHHHHC-------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHH
T ss_pred hhhccChHHHHHH------HHHHHHHC-------CCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhH
Confidence 3688888888999 99999984 6889999999999999999986533 33455555455555
Q ss_pred HHHHhcCCeEEEeccc--------CCCCcccCHHHHHhhccC----CeeEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhC
Q 018665 75 EMARIADATPVILPTR--------ISENFLLDPKVLESKLTE----KSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKH 141 (352)
Q Consensus 75 ~~~~~~g~~v~~i~~~--------~~~~~~~d~~~l~~~l~~----~~~~i~i~~p~npt-G~~~~~~~l~~l~~~~~~~ 141 (352)
......|..++.+..+ ....+.+|+++|++++++ .+.+++++.++|.. |.++|.+++++|.++|++|
T Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~ 215 (465)
T d1ax4a_ 136 AHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH 215 (465)
T ss_dssp HHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHc
Confidence 6677888887766432 123456899999999853 44556666666654 4678999999999999999
Q ss_pred CCEEEEecccccccccC-------CCCccccccCCCC--CCceEEEeccccccccccceeEEEEcChh--HHHHHHhh--
Q 018665 142 PRLLVLSDEIYEHIIYA-------PATHTSFASLPGM--WERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAACNKI-- 208 (352)
Q Consensus 142 ~~~~livD~~~~~~~~~-------~~~~~~~~~~~~~--~~~~i~~~s~sK~~g~~g~~~g~l~~~~~--~~~~~~~~-- 208 (352)
|+++|+|+++...... +....+......+ .-..++..|.+|.. .+.+.|+++.+.. +.......
T Consensus 216 -g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~--~~~~~g~l~~~~~~~~~~~~~~~~~ 292 (465)
T d1ax4a_ 216 -GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDP--LLNIGGLVAIRDNEEIFTLARQRCV 292 (465)
T ss_dssp -TCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTT--CCSSCEEEEESSCHHHHHHHHHHHH
T ss_pred -CCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCc--ccccceeEeecchHHHHHhhhcccc
Confidence 9999999998632110 0000111110000 00125566666665 5556788877653 22222211
Q ss_pred --hhccc-cCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCC-c
Q 018665 209 --QSQFT-SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-E 284 (352)
Q Consensus 209 --~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~-~ 284 (352)
....+ .+.......++...+... ..++..++..++.+++.+.|++. ++.++.+.+++.++.+....... .
T Consensus 293 ~~~~~~~~~~~~~~~~~a~~~~~~e~-----~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~ 366 (465)
T d1ax4a_ 293 PMEGFVTYGGLAGRDMAAMVQGLEEG-----TEEEYLHYRIGQVKYLGDRLREA-GIPIQYPTGGHAVFVDCKKLVPQIP 366 (465)
T ss_dssp HHTCSTTTTTCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEESTTTCTTSC
T ss_pred ccccCCCcchhhHHHHHHHhhhhHHh-----hhHHHHHHHHHHHHHHHHHHHhh-cCccccCCCcceeeeehhhhcCCCc
Confidence 11111 122333333333333221 11233444555677888888887 88888777777776654332111 1
Q ss_pred ccCCCCCCChHHHHHHHHHccCEEeccCCC-------------CCCCCeEEEEeec---CHHHHHHHHHHHHHHHhhhC
Q 018665 285 AEGFGKIENSESLCRYLLDKAQVALVPGDA-------------FGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLR 347 (352)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~-------------~~~~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~~ 347 (352)
...+ ........++.+.||.....+. +...+.+|++++. |+||+|++++.|++++++..
T Consensus 367 ~~~~----~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~ 441 (465)
T d1ax4a_ 367 GDQF----PAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 441 (465)
T ss_dssp GGGC----HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred cccc----hhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111 2444555556566886532211 1123579998763 89999999999999987654
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=9.6e-18 Score=146.36 Aligned_cols=279 Identities=13% Similarity=0.059 Sum_probs=195.0
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH-----HhcCCeEEEecccCCCCcccCHHHHHhhcc-CCe
Q 018665 37 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-----RIADATPVILPTRISENFLLDPKVLESKLT-EKS 110 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~-----~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~-~~~ 110 (352)
.+|.. .|++.|+..++.+++++||+|+..+..+.++...- .....+.+.++++. +..+|.|++++..+ .+|
T Consensus 90 anVqp-~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~--~~~IDyd~l~~~a~~~kP 166 (416)
T d1dfoa_ 90 ANVQP-HSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA--TGHIDYADLEKQAKEHKP 166 (416)
T ss_dssp EECCC-SSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS--SSSBCHHHHHHHHHHHCC
T ss_pred ceeec-ccCccHHHHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCC--ccCccHHHHHHHHHHhcc
Confidence 34444 67778899999999999999999988877765322 23345777777764 34599999999886 489
Q ss_pred eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccc-cccCCCCccccccCCCCCCceEEEecccccccccc
Q 018665 111 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 189 (352)
Q Consensus 111 ~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g 189 (352)
++|++....+| ...| ++++.++|++. |.++++|.+|.. +...+..+.++. .. +++++|.+|+| +|
T Consensus 167 klIi~G~S~y~--r~~d---~~~~reiad~v-ga~l~~D~aH~~GLIa~g~~~sP~~-~a-----Dvvt~tThKtl--rG 232 (416)
T d1dfoa_ 167 KMIIGGFSAYS--GVVD---WAKMREIADSI-GAYLFVDMAHVAGLVAAGVYPNPVP-HA-----HVVTTTTHKTL--AG 232 (416)
T ss_dssp SEEEEECSSCC--SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCCTT-TS-----SEEEEESSSTT--CC
T ss_pred ceEEecccccc--cccC---HHHHHHHHHhc-CceEEcchhhhhcceeccccCCccc-cc-----ceeeeehhhcc--cC
Confidence 99887654443 5677 89999999999 999999999873 333333333332 22 39999999998 67
Q ss_pred ceeEEEEcC---hhHHHHHHhhhhccccCCChH-HHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceec
Q 018665 190 WRLGYIAGP---KHFVAACNKIQSQFTSGASSI-SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 265 (352)
Q Consensus 190 ~~~g~l~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 265 (352)
.|.|.++.+ +++.+++.+..-+...+.+.+ ..++.+.++... ....+.+-.+++.++.+.|.+.|.+. |+.++
T Consensus 233 PrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea--~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv 309 (416)
T d1dfoa_ 233 PRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEA--MEPEFKTYQQQVAKNAKAMVEVFLER-GYKVV 309 (416)
T ss_dssp CSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEG
T ss_pred CCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHhC-Ccccc
Confidence 788999975 567777765543333333333 333334444431 24556777888899999999999988 99988
Q ss_pred C-CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC------CCCeEEEEeec------CHHHH
Q 018665 266 E-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG------DDTCIRISYAA------SLTTL 332 (352)
Q Consensus 266 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~------~~~~iRi~~~~------~~~~l 332 (352)
. ......+++++.+.. .++....+.|. +.||.+.-.+..+ .+..+||..+. .++|+
T Consensus 310 ~ggTdnHlvlvdl~~~~----------~~G~~a~~~Le-~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~ 378 (416)
T d1dfoa_ 310 SGGTDNHLFLVDLVDKN----------LTGKEADAALG-RANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEA 378 (416)
T ss_dssp GGSCSSSEEEEECGGGT----------CCHHHHHHHHH-HTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHH
T ss_pred cCCCCCceeEEEecccC----------CCHHHHHHHHH-HcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHH
Confidence 4 345566788875431 15566655544 5699875433322 24679999865 67999
Q ss_pred HHHHHHHHHHHhhh
Q 018665 333 QAAVERIKKGLLTL 346 (352)
Q Consensus 333 ~~~~~~l~~~~~~~ 346 (352)
++..+.|.++++..
T Consensus 379 ~~iA~~I~~~l~~~ 392 (416)
T d1dfoa_ 379 KELAGWMCDVLDSI 392 (416)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999888653
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.81 E-value=3.7e-18 Score=148.29 Aligned_cols=280 Identities=14% Similarity=0.126 Sum_probs=196.3
Q ss_pred CcEEEeCChHHHHHHHHHHhcCCCCEEEecCCCCCChHH-----HHHhcCCeEEEecccCCCCcccCHHHHHhhcc-CCe
Q 018665 37 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE-----MARIADATPVILPTRISENFLLDPKVLESKLT-EKS 110 (352)
Q Consensus 37 ~~i~~~~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~-----~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~-~~~ 110 (352)
.+|-. .|++.|+..++.+|+++||+|+..++...++.. .......+++.++++. +++.+|.|++++.++ .+|
T Consensus 87 anVqp-~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~-~~~~ID~d~l~~~a~~~kP 164 (405)
T d1kl1a_ 87 ANVQP-HSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARLHRP 164 (405)
T ss_dssp EECCC-SSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCC
T ss_pred ceeec-cCchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccch-hcccccHHHHHHHHHhhCc
Confidence 34433 466678888999999999999988876665542 2223357788888875 445799999999886 489
Q ss_pred eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCCCccccccCCCCCCceEEEecccccccccc
Q 018665 111 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 189 (352)
Q Consensus 111 ~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g 189 (352)
++|++....+| ...| ++++.++|++. |.++++|.+|. ++...+..+.++ ... +++++|.+|+| +|
T Consensus 165 klIi~G~S~y~--r~~d---~~~~reIad~v-ga~l~~D~aH~~GLIa~g~~~~P~-~~a-----Dvvt~tThKtl--rG 230 (405)
T d1kl1a_ 165 KLIVAAASAYP--RIID---FAKFREIADEV-GAYLMVDMAHIAGLVAAGLHPNPV-PYA-----HFVTTTTHKTL--RG 230 (405)
T ss_dssp SEEEECCSSCC--SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCST-TTC-----SEEEEESSSTT--CC
T ss_pred ceEEecccccc--cccC---hHHHHHHHhhh-CCEEecchhhHhhhhhhhhcCChh-hhh-----hheeccccccc--cC
Confidence 99887665554 4556 88999999999 99999999987 344444444444 222 38899999998 67
Q ss_pred ceeEEEEcChhHHHHHHhhhhccccCCChHH-HHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCC-
Q 018665 190 WRLGYIAGPKHFVAACNKIQSQFTSGASSIS-QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP- 267 (352)
Q Consensus 190 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~- 267 (352)
.|.|.+++++++.+++.+..-+...+.+.+. .++.+.++... ....+.+-.+++.++.+.|.+.|.+. |+.++..
T Consensus 231 Prgg~I~~~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea--~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~gg 307 (405)
T d1kl1a_ 231 PRGGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGG 307 (405)
T ss_dssp CSCEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS
T ss_pred CCCceEEecchhHHHHHhhhCcccccCcchhHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCC
Confidence 8999999999998888775444433333333 33333343321 13456777788888999999999987 9998843
Q ss_pred CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC------CCCeEEEEeec------CHHHHHHH
Q 018665 268 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG------DDTCIRISYAA------SLTTLQAA 335 (352)
Q Consensus 268 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~------~~~~iRi~~~~------~~~~l~~~ 335 (352)
.....+++++.... .+.....+. +++.||.+.-....+ .+..+||..+. .++|+.+.
T Consensus 308 Td~H~vlvdl~~~~----------~~g~~ae~~-Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~i 376 (405)
T d1kl1a_ 308 TDNHLLLVDLRPQQ----------LTGKTAEKV-LDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEI 376 (405)
T ss_dssp CSSSEEEEECGGGT----------CCHHHHHHH-HHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred CccceeeccccccC----------CcHHHHHHH-HHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHH
Confidence 44556888875431 145555444 445699886333222 24689999865 77999999
Q ss_pred HHHHHHHHhhh
Q 018665 336 VERIKKGLLTL 346 (352)
Q Consensus 336 ~~~l~~~~~~~ 346 (352)
.+.|.++++..
T Consensus 377 a~~I~~~l~~~ 387 (405)
T d1kl1a_ 377 AAIIGLVLKNV 387 (405)
T ss_dssp HHHHHHHHTCT
T ss_pred HHHHHHHHhcC
Confidence 99999998653
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.81 E-value=4.8e-18 Score=153.93 Aligned_cols=311 Identities=11% Similarity=0.069 Sum_probs=192.1
Q ss_pred HHHHHHHH-hcCCCCCCCcEEEeCChHHHHHHHHHHh--cCCCCEEEecCCCCCChHHHHHhcC------------CeEE
Q 018665 21 QQFVINLK-ENGLSYTPDQILVSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIAD------------ATPV 85 (352)
Q Consensus 21 ~~ia~~~~-~~~~~~~~~~i~~~~g~~~a~~~~~~~l--~~~~~~vl~~~~~~~~~~~~~~~~g------------~~v~ 85 (352)
..+|+.+. ... -.-+.++++++|++|++.+++.. ....++|+.....|++.....-..+ ....
T Consensus 86 ~~la~~L~~~~~--~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~ 163 (431)
T d1zoda1 86 VDLATRLANITP--PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSF 163 (431)
T ss_dssp HHHHHHHHHHSC--TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEE
T ss_pred HHHHHHHHHhCC--cccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCce
Confidence 45555554 221 13478999999999999999874 2234678888777777654443211 1122
Q ss_pred EecccCCCC-------ccc---CHHHHHhhc----cCCeeEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEecc
Q 018665 86 ILPTRISEN-------FLL---DPKVLESKL----TEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDE 150 (352)
Q Consensus 86 ~i~~~~~~~-------~~~---d~~~l~~~l----~~~~~~i~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~livD~ 150 (352)
.++.+.... ... +++.+...+ .+++.++++...+...|. .+|++.+++|.++|++| |+++|.||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~-gillI~DE 242 (431)
T d1zoda1 164 AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR-GMLLILDE 242 (431)
T ss_dssp EECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH-TCEEEEEC
T ss_pred eeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhc-CceEEecc
Confidence 222221110 001 123333222 246677777666555565 46888999999999999 99999999
Q ss_pred cccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhHHHHHHhh--hhccccCCChHHHHHHHHHh
Q 018665 151 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAAL 228 (352)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 228 (352)
++.++...|..... ....-.+| +.+++|.+| +|...+.+++.++..+..... ....+++.++++.+++.+.+
T Consensus 243 V~tG~gRtG~~~~~-~~~gv~PD----i~~~gK~l~-gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l 316 (431)
T d1zoda1 243 AQTGVGRTGTMFAC-QRDGVTPD----ILTLSKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVL 316 (431)
T ss_dssp TTTTTTTTSSSSTH-HHHTCCCS----EEEECHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-ccCCCCcc----hhccccccc-cccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHH
Confidence 99998777653222 11211112 666789998 889999999998887776543 24456789999999998888
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEE
Q 018665 229 GLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 308 (352)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 308 (352)
+.... ++..++..+.-++..+.+.+.+++.+.+.-+... |.++.+++.......... ......+.+.++++ |+.
T Consensus 317 ~~i~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~-Glm~~ie~~~~~~~~~~~---~~~~~~i~~~~~~~-Gl~ 390 (431)
T d1zoda1 317 DVVQR-DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGR-GLLLGVEIVKDRRTKEPA---DGLGAKITRECMNL-GLS 390 (431)
T ss_dssp HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEEEETTTTEEC---TTHHHHHHHHHHHT-TEE
T ss_pred HHhhh-hhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeec-ceEEEEEEecCCcccCcc---HHHHHHHHHHHHHh-Ccc
Confidence 75221 3444454444455555556666655444333333 444445442111000000 00256788888876 775
Q ss_pred eccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 309 LVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 309 i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
...-......+.+|++++. +++||++++++|.++++++
T Consensus 391 ~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v 430 (431)
T d1zoda1 391 MNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 430 (431)
T ss_dssp CCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4221111246789999886 9999999999999999875
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.80 E-value=7.8e-18 Score=153.55 Aligned_cols=308 Identities=11% Similarity=0.059 Sum_probs=208.7
Q ss_pred CCCChhhhccchhhHHHHHHHH-hcCCCC-------CCCcEEEeCChHHHHHHHHHHhcC----------CC--------
Q 018665 7 SQGTLQMRVLWSFVQQFVINLK-ENGLSY-------TPDQILVSNGAKQSILQAVLAVCS----------PG-------- 60 (352)
Q Consensus 7 ~~~~~~l~~~~~~~~~ia~~~~-~~~~~~-------~~~~i~~~~g~~~a~~~~~~~l~~----------~~-------- 60 (352)
.+...+++ +.+.+++. ..|++- ....-++++|+|+++..++.+... .+
T Consensus 108 sp~~t~iE------~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~ 181 (476)
T d1js3a_ 108 SPACTELE------TVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLE 181 (476)
T ss_dssp CHHHHHHH------HHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred hhhHHHHH------HHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccC
Confidence 34445566 77777777 666642 234568999999999988876421 11
Q ss_pred -CEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccC------CeeEEEEcCCCCCcccCCCHHHHHH
Q 018665 61 -DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDE 133 (352)
Q Consensus 61 -~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~------~~~~i~i~~p~nptG~~~~~~~l~~ 133 (352)
-.|++++-.|.++..++...|..+..++++ .++.+|+++|++++++ .+.+|+.+..++.+|.+-| +++
T Consensus 182 ~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d--~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp---l~~ 256 (476)
T d1js3a_ 182 KLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---LLE 256 (476)
T ss_dssp HEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHH
T ss_pred ceEEEecccccHHHHHHHHhcCceEEEeccC--CCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc---HHH
Confidence 247788999999999999999999999986 5567999999999964 2455666777899999999 999
Q ss_pred HHHHHHhCCCEEEEecccccccccCCCCccc-cccCCCCCCceEEEeccccccccccceeEEEEcCh-hHHHHH------
Q 018665 134 IARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAAC------ 205 (352)
Q Consensus 134 l~~~~~~~~~~~livD~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~-~~~~~~------ 205 (352)
|+++|+++ |+++.||.+++++...-..... +..+ ..-+-+..++||.++.| ...|.++.++ ......
T Consensus 257 I~~i~~~~-~~wlHVDAA~Gg~~~~~~~~~~~~~gi---~~aDSit~d~HK~l~~P-~~~g~~l~r~~~~~~~~~~~~~~ 331 (476)
T d1js3a_ 257 VGPICHEE-DIWLHVDAAYAGSAFICPEFRHLLNGV---EFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPV 331 (476)
T ss_dssp HHHHHHHT-TCEEEEECTTGGGGGGSTTTGGGGTTG---GGCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC----
T ss_pred HHHHHHhc-CcEEEEecccchhhhhhcchhhhhcCC---cccceeeecCccccccC-CcceeecccchHHHHHHHhcChh
Confidence 99999999 9999999999876432221111 1111 12337788899998744 4677776654 322211
Q ss_pred --Hhhh---------hcccc----CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCc
Q 018665 206 --NKIQ---------SQFTS----GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 270 (352)
Q Consensus 206 --~~~~---------~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g 270 (352)
.... ..++. ....+...++...+ +.+.++++.++.-+..+++.+.|++.|+++++.+..-
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~-----G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l 406 (476)
T d1js3a_ 332 YLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY-----GVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTL 406 (476)
T ss_dssp --------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCS
T ss_pred hhccccccccccccccccccccchhhHHHHHHHHHHHH-----hHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCce
Confidence 0000 00011 11122222333333 3677888898899999999999999999999866555
Q ss_pred eEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec---CHHHHHHHHHHHHHHHhhh
Q 018665 271 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~---~~~~l~~~~~~l~~~~~~~ 346 (352)
..+.+++...- ....++.++|.+++.+.+.+. ......++|+++.. ++++++.+++.|++..+++
T Consensus 407 ~iV~Fr~~~~d----------~~n~~l~~~l~~~G~~~~s~t-~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 407 GLVCFRLKGSD----------GLNEALLERINSARKIHLVPC-RLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp SEEEEEESSCH----------HHHHHHHHHHHHHTSCBCEEE-EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEccCCh----------HHHHHHHHHHHhcCCEEEeee-eECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55656654320 024578888887744555442 22234489999863 7789999999999998775
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.78 E-value=9.9e-17 Score=142.60 Aligned_cols=287 Identities=15% Similarity=0.126 Sum_probs=194.6
Q ss_pred hhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc-CC--CCEEEecCCCCCChHHHHHhcCCeEEEecccCCCC
Q 018665 18 SFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC-SP--GDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 94 (352)
Q Consensus 18 ~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~--~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~ 94 (352)
+|++.++++++ .++++.++|+|.|+..++.++. +. +++|++|..++.....++...|.+++.++++.+.
T Consensus 35 ~fE~~~~~~~g-------~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~- 106 (371)
T d2fnua1 35 LFEEALCEFLG-------VKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKNDG- 106 (371)
T ss_dssp HHHHHHHHHHT-------CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTS-
T ss_pred HHHHHHHHHHC-------cCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeeeccCcccccccccccc-
Confidence 46699999985 5678999999999999999974 33 3589999999999999999999999999998644
Q ss_pred cccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCc
Q 018665 95 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 174 (352)
Q Consensus 95 ~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
..+.+.+++.+.+++++|++++ ..|...+ ++++.++|+++ ++++|+|.+++....-.. ..... ..
T Consensus 107 -~~~~~~~~~~~~~~t~avi~vh---~~G~~~~---~~~i~~~~~~~-~i~lIEDaaqa~Ga~~~~--~~~G~-----~g 171 (371)
T d2fnua1 107 -NIDELALEKLINERTKAIVSVD---YAGKSVE---VESVQKLCKKH-SLSFLSDSSHALGSEYQN--KKVGG-----FA 171 (371)
T ss_dssp -SBCGGGSGGGCCTTEEEEEEEC---GGGCCCC---HHHHHHHHHHH-TCEEEEECTTCTTCEETT--EETTS-----SS
T ss_pred -cccchhhhhhccchhhcccccc---ccccccc---ccccccccccc-chhhccchhhccCceecc--ccCCc-----cc
Confidence 3567888999999999988654 5688888 88999999999 999999999986432111 11111 11
Q ss_pred eEEEecc--ccccccccceeEEEEc-ChhHHHHHHhhhhc----------------cccCCChHHHHHHHHHhcccCCCh
Q 018665 175 TLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ----------------FTSGASSISQKAGVAALGLGYAGG 235 (352)
Q Consensus 175 ~i~~~s~--sK~~g~~g~~~g~l~~-~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~ 235 (352)
.+.+.|| +|.++ .|- .|.+++ ++++.++++..... +.+.++.+..+.+...|+
T Consensus 172 ~~~~~Sf~~~K~l~-~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~------ 243 (371)
T d2fnua1 172 LASVFSFHAIKPIT-TAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLK------ 243 (371)
T ss_dssp SEEEEECCTTSSSC-CSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHT------
T ss_pred cccccccccccccc-ccc-ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhh------
Confidence 2455565 79886 443 466665 55777777654321 123345544444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceecCCC----Cc-eEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEec
Q 018665 236 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GA-FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 310 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~ 310 (352)
.+++..++-+++...+.+.|.+.+++....+. .. ....+.+.+... ...+.+.+.|.++ ||.+.
T Consensus 244 -~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~r~~~~~~L~~~-gI~~~ 312 (371)
T d2fnua1 244 -KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF---------TCKKLILESLHKR-GILAQ 312 (371)
T ss_dssp -THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG---------GGHHHHHHHHHHT-TEECB
T ss_pred -hccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccch---------hHHHHHHHHHHHC-CCCcc
Confidence 24455555566777778888887776654321 11 112222322110 0346788888765 99886
Q ss_pred cCCCC-----------CCC----------CeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 311 PGDAF-----------GDD----------TCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 311 ~g~~~-----------~~~----------~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+.... ... ..+.|.+.. +++|+++.++.|.++++.+
T Consensus 313 ~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 313 VHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp CCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 54211 000 257776655 9999999999999998754
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.77 E-value=6e-17 Score=144.27 Aligned_cols=295 Identities=17% Similarity=0.145 Sum_probs=186.6
Q ss_pred hhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHh-cCCCCEEEecCCCCCChHHHHHhcCCeEEEecccCCCC-c
Q 018665 18 SFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN-F 95 (352)
Q Consensus 18 ~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~-~ 95 (352)
+|++.++++++ .+..+.++|+|.|+..++.++ .++||+|++|..+|.....++...|..++.+++++... .
T Consensus 25 ~fE~~~~~~~~-------~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~ 97 (374)
T d1o69a_ 25 RFEQSVKDYSK-------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNID 97 (374)
T ss_dssp HHHHHHHHHHC-------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBC
T ss_pred HHHHHHHHHHC-------cCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHhhccceeEecccccccccc
Confidence 46699999984 568999999999999999998 77899999999999999999999999999999984322 1
Q ss_pred ccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccccccc-CCCCccccccCCCCCCc
Q 018665 96 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-APATHTSFASLPGMWER 174 (352)
Q Consensus 96 ~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~-~~~~~~~~~~~~~~~~~ 174 (352)
..+.+++.....++++++++.+. .|...+ ++++.++|+++ |++||+|.+++.... .+ ...... -
T Consensus 98 ~~~~~~~~~~~~~~~~aii~~~~---~G~~~d---~~~i~~~~~~~-~i~vIED~a~a~g~~~~~---~~~G~~-----g 162 (374)
T d1o69a_ 98 VDLLKLAIKECEKKPKALILTHL---YGNAAK---MDEIVEICKEN-DIVLIEDAAEALGSFYKN---KALGTF-----G 162 (374)
T ss_dssp HHHHHHHHHHCSSCCCEEEEECG---GGCCCC---HHHHHHHHHHT-TCEEEEECTTCTTCEETT---EETTSS-----S
T ss_pred cccccccchhccccccccccccc---ccchhh---hHHHHHHhhcc-CcchhhhhhhhhcceECC---eecCCC-----C
Confidence 12333444566678888885444 577888 99999999999 999999999986322 11 111111 1
Q ss_pred eEEEecc--ccccccccceeEEEE-cChhHHHHHHhhhhc--------------cccCCChHHHHHHHHHhcccCCChHH
Q 018665 175 TLTVNGF--SKAFAMTGWRLGYIA-GPKHFVAACNKIQSQ--------------FTSGASSISQKAGVAALGLGYAGGEV 237 (352)
Q Consensus 175 ~i~~~s~--sK~~g~~g~~~g~l~-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (352)
++.+.|| +|.++ .|- .|.++ -++++.+.++..... +.+.++.+..+.+...++.
T Consensus 163 d~~~fSf~~~K~l~-tge-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~------- 233 (374)
T d1o69a_ 163 EFGVYSYNGNKIIT-TSG-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEV------- 233 (374)
T ss_dssp SEEEEECCTTSSSC-CSS-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTT-------
T ss_pred ceEEEeccCccccc-ccc-ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhh-------
Confidence 3667777 58886 343 35555 466777776644321 1234555555555555443
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCceecCC----CC-ceEEEeecCCccCCcc--------cCCCCCCChHHHHHHHHHc
Q 018665 238 VSKMVKAFRERRDFLVKSFGELEGVKMSEP----QG-AFYLFIDFSTYYGSEA--------EGFGKIENSESLCRYLLDK 304 (352)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~----~~-g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~ 304 (352)
+.+..++-++.++.+.+.|.....+..... .. -+++.+......-..+ ...........+.+.|.++
T Consensus 234 l~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 313 (374)
T d1o69a_ 234 LEQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNK 313 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHT
T ss_pred hhhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeeccccccccccccccccchhhccchhhHHHHHHHHHHC
Confidence 344445555566777777775422111110 11 1112222111000000 0000001356788888865
Q ss_pred cCEEeccCCCC-------C------CC-------CeEEEEeec--CHHHHHHHHHHHHHHHh
Q 018665 305 AQVALVPGDAF-------G------DD-------TCIRISYAA--SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 305 ~gi~i~~g~~~-------~------~~-------~~iRi~~~~--~~~~l~~~~~~l~~~~~ 344 (352)
||.+++.... . .+ ..+.|.+.. +++|+++.++.|.++++
T Consensus 314 -gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 314 -QIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp -TCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred -CCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHHHC
Confidence 8987654210 0 01 246666655 99999999999999873
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=5.7e-18 Score=155.37 Aligned_cols=314 Identities=12% Similarity=0.020 Sum_probs=189.9
Q ss_pred ccCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCE---------EEecCCCCCCh
Q 018665 3 FVRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE---------VIIPAPFWVSY 73 (352)
Q Consensus 3 ~y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~~~~---------vl~~~~~~~~~ 73 (352)
.|+.++...+++ ++++++++ .+.+++++||++|+..++.+++++++. +......|...
T Consensus 69 ~Y~~~~~~~~le------~~~a~l~G-------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ 135 (467)
T d2v1pa1 69 AFSGSRSYYALA------ESVKNIFG-------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT 135 (467)
T ss_dssp CSSSCHHHHHHH------HHHHHHTC-------CSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHH
T ss_pred hhcCCchHHHHH------HHHHHHHC-------CCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccccccc
Confidence 466667777788 99999974 678899999999999999998665433 44444455555
Q ss_pred HHHHHhcCCeEEEecccCCC--------CcccCHHHHHhhcc----CCeeEEEEcCCCCC-cccCCCHHHHHHHHHHHHh
Q 018665 74 PEMARIADATPVILPTRISE--------NFLLDPKVLESKLT----EKSRLLILCSPSNP-TGSVYPKNLLDEIARIVAK 140 (352)
Q Consensus 74 ~~~~~~~g~~v~~i~~~~~~--------~~~~d~~~l~~~l~----~~~~~i~i~~p~np-tG~~~~~~~l~~l~~~~~~ 140 (352)
.......|..+..++.+... ...+|+++|++.++ +.++++++.+.+|. .|.++|.+++++|.++|++
T Consensus 136 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~ 215 (467)
T d2v1pa1 136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence 67788899999888766421 24579999999885 24567777777664 5688899999999999999
Q ss_pred CCCEEEEeccccccc----------ccCCCCccccc-cCCCCCCceEEEeccccccccccceeEEEEcChhHHHH-HH--
Q 018665 141 HPRLLVLSDEIYEHI----------IYAPATHTSFA-SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA-CN-- 206 (352)
Q Consensus 141 ~~~~~livD~~~~~~----------~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~~~~-~~-- 206 (352)
| |+++++|+++... .+.+....... .+. ....++..|.+|.++ +...|++..+++.+.. ..
T Consensus 216 ~-g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~d~~s~s~~K~~~--~~~gg~i~~~~~~~~~~~~~~ 290 (467)
T d2v1pa1 216 Y-DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY--KYADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTEC 290 (467)
T ss_dssp T-TCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG--GGCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHHH
T ss_pred c-CCEEEEechhhhccccccccccccccCCcccccchhhc--ccCCEEEecCCCCCC--CCCceeEEecchhhhhHHHhh
Confidence 9 9999999997631 11111110000 000 122367778888875 3345777666543322 21
Q ss_pred -hhhh-----ccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE-EEe--ec
Q 018665 207 -KIQS-----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY-LFI--DF 277 (352)
Q Consensus 207 -~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~-~~~--~~ 277 (352)
.... ....+.+.....+....+.... .. +..++..++.+++.+.|++. +..+.++..... +.. .+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~~~~~ 364 (467)
T d2v1pa1 291 RTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM-NL----DWLAYRIAQVQYLVDGLEEI-GVVCQQAGGHAAFVDAGKLL 364 (467)
T ss_dssp HHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT-CH----HHHHHHHHHHHHHHHHHHHT-TCCEEEECSSCEEEEHHHHS
T ss_pred cccccccccCcchhhhHHHHHHHHHHHhHHhh-hH----HHHHHHHHHHHHHHHHHHhc-CCcccCCCccceeecchhhc
Confidence 1111 1112233333333343343211 13 33344455667788888776 544433222221 111 12
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHccCEEeccCC-------------CCCCCCeEEEEeec---CHHHHHHHHHHHHH
Q 018665 278 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD-------------AFGDDTCIRISYAA---SLTTLQAAVERIKK 341 (352)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~-------------~~~~~~~iRi~~~~---~~~~l~~~~~~l~~ 341 (352)
+..... .+ ....+...++.+.||.....+ .......+|++++. |+||+|++++.|++
T Consensus 365 ~~~~~~---~~----~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~ 437 (467)
T d2v1pa1 365 PHIPAD---QF----PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKH 437 (467)
T ss_dssp TTSCGG---GC----HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHH
T ss_pred CCcchh---hh----hhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHH
Confidence 221110 00 344555566666787542211 11124579999864 89999999999999
Q ss_pred HHhhhC
Q 018665 342 GLLTLR 347 (352)
Q Consensus 342 ~~~~~~ 347 (352)
+.++..
T Consensus 438 v~~~~~ 443 (467)
T d2v1pa1 438 VKENAA 443 (467)
T ss_dssp HHHTGG
T ss_pred HHHHHH
Confidence 997543
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.76 E-value=3.4e-17 Score=149.10 Aligned_cols=297 Identities=12% Similarity=-0.004 Sum_probs=177.9
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc----------------------------CCCCEEEecCCCCCC
Q 018665 21 QQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC----------------------------SPGDEVIIPAPFWVS 72 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~----------------------------~~~~~vl~~~~~~~~ 72 (352)
+.+++.+.... +-..+.++++++|++|++.+++... .+..+|+.....|++
T Consensus 103 ~~lae~l~~~~-~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG 181 (461)
T d1ohwa_ 103 EKLRESLLSVA-PKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHG 181 (461)
T ss_dssp HHHHHTGGGGC-CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCC
T ss_pred HHHHHHHHhhh-ccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCC
Confidence 45555543111 1234689999999999999987642 123468888777776
Q ss_pred hH-HHHHhcCCe-----------EEEecccCC-CCc-----------ccCHHHHHhhc------cCCeeEEEEcCCCCCc
Q 018665 73 YP-EMARIADAT-----------PVILPTRIS-ENF-----------LLDPKVLESKL------TEKSRLLILCSPSNPT 122 (352)
Q Consensus 73 ~~-~~~~~~g~~-----------v~~i~~~~~-~~~-----------~~d~~~l~~~l------~~~~~~i~i~~p~npt 122 (352)
.. .++...|.+ ....+.... ... ..+.+.+++.+ .+++.+|+++..+...
T Consensus 182 ~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~ 261 (461)
T d1ohwa_ 182 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEG 261 (461)
T ss_dssp SSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTT
T ss_pred CCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccc
Confidence 44 333333221 011111100 000 01234455544 2467777877777666
Q ss_pred c-cCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceEEEeccccccccccceeEEEEcChhH
Q 018665 123 G-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 201 (352)
Q Consensus 123 G-~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~~~g~l~~~~~~ 201 (352)
| ..+|++.+++|.++|+++ |+++|+||++.++..+|.. ..+...... ...-+.+++|.++ +| +......+
T Consensus 262 G~~~~~~~fl~~lr~lc~~~-gillI~DEV~tG~gRtG~~-~~~e~~gi~--~~PDiv~~gK~l~-~g----~~~~~~~~ 332 (461)
T d1ohwa_ 262 GDNHASDDFFRKLRDISRKH-GCAFLVDEVQTGGGSTGKF-WAHEHWGLD--DPADVMTFSKKMM-TG----GFFHKEEF 332 (461)
T ss_dssp TCBCCCHHHHHHHHHHHHHT-TCEEEEECTTTCSSTTSSS-SGGGGGCCS--SCCSEEEECGGGS-SE----EEEECGGG
T ss_pred cccCchhhHHHHHHHHHHhh-Ccceecccccccccccccc-ccccccccc--cCchhhhhhhccc-cc----cccccccc
Confidence 6 446788999999999999 9999999999999877752 222222111 0112446789886 33 33322222
Q ss_pred HHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCC-ceecCCCCceEEEeecCCc
Q 018665 202 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG-VKMSEPQGAFYLFIDFSTY 280 (352)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g-~~~~~~~~g~~~~~~~~~~ 280 (352)
..........+++.+++..+++.+.|+.-.. ++.+++..+.-+...+.+.+...+.|. +.-+. ..|.++.+++++.
T Consensus 333 -~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~-~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vr-G~Gl~~~ie~~~~ 409 (461)
T d1ohwa_ 333 -RPNAPYRIFNTWLGDPSKNLLLAEVINIIKR-EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVR-GRGTFCSFDTPDE 409 (461)
T ss_dssp -SCSSTTSSCCSCSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE-EETTEEEEECSSH
T ss_pred -ccccccccccccccccccchhhcccchhhhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEee-eeeEEEEEEcCCH
Confidence 1112233455678899999999998875211 222333333333333333333333333 22232 2355677888754
Q ss_pred cCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 281 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
. ...++.+.++++ |+.+.+.+ ++.||+.++. ++++++.++++|++++.++
T Consensus 410 ~-----------~~~~i~~~~~~~-Gll~~~~~----~~~ir~~PpL~it~~eid~~~~~l~~~l~ef 461 (461)
T d1ohwa_ 410 S-----------IRNKLISIARNK-GVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 461 (461)
T ss_dssp H-----------HHHHHHHHHHHT-TEECEEET----TTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred H-----------HHHHHHHHHHHC-CeEEeeCC----CCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence 2 466888998876 99987742 5789998876 9999999999999999874
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.76 E-value=2.9e-16 Score=139.09 Aligned_cols=273 Identities=12% Similarity=0.087 Sum_probs=188.8
Q ss_pred CChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH----------HhcCCeEEEecccCCCCcccCHHHHHhhcc-CCee
Q 018665 43 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----------RIADATPVILPTRISENFLLDPKVLESKLT-EKSR 111 (352)
Q Consensus 43 ~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~----------~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~-~~~~ 111 (352)
.|++.|+..++.+++++||+|+..+....++...- .....+...++++.+ ++.+|.|++++..+ .+|+
T Consensus 104 ~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~-~~~IDyd~l~~~a~~~kPk 182 (470)
T d1rv3a_ 104 YSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD-TGYIDYDRLEENARLFHPK 182 (470)
T ss_dssp SSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHHCCS
T ss_pred cCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecc-cCcccHHHHHHHHHhhCcc
Confidence 67778899999999999999998876555544221 122367788888754 45699999999886 4899
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCCCccccccCCCCCCceEEEeccccccccccc
Q 018665 112 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 190 (352)
Q Consensus 112 ~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~ 190 (352)
+|++-...+| ..+| ++++.++|++. |.++++|.+|. ++...+..+.++. .. +++++|.+|+| +|.
T Consensus 183 lIi~G~S~y~--r~~d---~~~~reIad~v-ga~l~~D~aH~aGLIA~g~~~sPl~-~a-----Dvvt~tTHKtl--rGP 248 (470)
T d1rv3a_ 183 LIIAGTSCYS--RNLD---YGRLRKIADEN-GAYLMADMAHISGLVVAGVVPSPFE-HC-----HVVTTTTHKTL--RGC 248 (470)
T ss_dssp EEEECCSSCC--SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCGGG-TC-----SEEEEESSGGG--CCC
T ss_pred eEeechhhcc--ccCC---HHHHHHHHhcc-CCeEEecchhhhhhccccccCChhh-ee-----eeeeeehhhhc--cCC
Confidence 9887665554 4567 88999999999 99999999987 3433444444443 22 39999999998 778
Q ss_pred eeEEEEcChh---------------HHHHHHhhhhcccc-CCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 191 RLGYIAGPKH---------------FVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 191 ~~g~l~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
|.|.|+.+++ +.+++.+..-+... ++.....++.+.++... ....+.+-.+++..+.+.|.+
T Consensus 249 rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea--~~~~fk~Ya~qvv~NAk~La~ 326 (470)
T d1rv3a_ 249 RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA--MTPEFKEYQRQVVANCRALSA 326 (470)
T ss_dssp SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHH
Confidence 8899987653 56666654333333 33333333333344431 134567778888889999999
Q ss_pred HhcccCCceecC-CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-----CCCeEEEEeec-
Q 018665 255 SFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYAA- 327 (352)
Q Consensus 255 ~l~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-----~~~~iRi~~~~- 327 (352)
.|.+. |+.++. ......+++++.... .+..+..+. +++.||.+.-....+ .+..+||..+.
T Consensus 327 ~L~~~-G~~v~~ggTdnHlvlvdl~~~g----------~~g~~ae~~-Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~al 394 (470)
T d1rv3a_ 327 ALVEL-GYKIVTGGSDNHLILVDLRSKG----------TDGGRAEKV-LEACSIACNKNTCPGDKSALRPSGLRLGTPAL 394 (470)
T ss_dssp HHHHT-TCEEGGGSCSSSEEEEEGGGGT----------CCHHHHHHH-HHHTTEECEEECCSSCSCTTSCCEEEEECHHH
T ss_pred HHHhC-CceeccCCCCCceEEEeecccC----------CcHHHHHHH-HHHcCcEECCCcCCCCCCCCCCCeeEecCHHH
Confidence 99987 888874 345566778875421 155565554 445699875433222 24679998864
Q ss_pred -----CHHHHHHHHHHHHHHHh
Q 018665 328 -----SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 328 -----~~~~l~~~~~~l~~~~~ 344 (352)
.++|+.+..+.|.++++
T Consensus 395 TtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 395 TSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHH
Confidence 77999999998888774
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.76 E-value=2e-16 Score=139.57 Aligned_cols=273 Identities=14% Similarity=0.088 Sum_probs=175.8
Q ss_pred CChHHHHHHHHHHhcCCCCEEEecCCCCCChHHHH--------HhcC--CeEEEecccCCCCcccCHHHHHhhcc-CCee
Q 018665 43 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA--------RIAD--ATPVILPTRISENFLLDPKVLESKLT-EKSR 111 (352)
Q Consensus 43 ~g~~~a~~~~~~~l~~~~~~vl~~~~~~~~~~~~~--------~~~g--~~v~~i~~~~~~~~~~d~~~l~~~l~-~~~~ 111 (352)
.|++.|+..++.+|+++||+|+..+..+.++...- ...| .+...+.+++ .+..+|.+++++..+ .+|+
T Consensus 100 ~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~-~~~~IDyd~~~~~a~~~kPk 178 (463)
T d2a7va1 100 YSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP-KTGLIDYNQLALTARLFRPR 178 (463)
T ss_dssp SSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT-TTCSBCHHHHHHHHHHHCCS
T ss_pred cccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccC-CCCcCcHHHHHHHHhhcCCc
Confidence 45668888899999999999998877666554222 1122 3455555553 345699999999886 4899
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEeccccc-ccccCCCCccccccCCCCCCceEEEeccccccccccc
Q 018665 112 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 190 (352)
Q Consensus 112 ~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~g~ 190 (352)
+|++-...+| ...| ++++.++|++. |.++++|.+|. ++...+..+.++ ... +++++|.+|+| +|.
T Consensus 179 lIi~G~S~y~--r~~d---~~~~reIad~v-ga~l~~D~aH~aGLIA~g~~~sP~-~~a-----Dvvt~tTHKTl--rGP 244 (463)
T d2a7va1 179 LIIAGTSAYA--RLID---YARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPF-KHA-----DIVTTTTHKTL--RGA 244 (463)
T ss_dssp EEEECCSSCC--SCCC---HHHHHHHHHHT-TCEEEEECGGGHHHHHTTSSCCGG-GTC-----SEEEEESSGGG--CSC
T ss_pred eEEecccccc--cccC---HHHHHHHhhcc-cceEEechhhhhHHhhhhhhcChh-hhh-----hhhhchhhhhh--cCC
Confidence 9887665554 4566 88999999999 99999999987 343344444444 222 39999999998 788
Q ss_pred eeEEEEcCh---------------hHHHHHHhhhhccccCCChHH-HHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Q 018665 191 RLGYIAGPK---------------HFVAACNKIQSQFTSGASSIS-QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 254 (352)
Q Consensus 191 ~~g~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (352)
|.|.|++++ ++.+++....-+...+.+.+. .++.+.++... ....+++-.+++.++.+.|.+
T Consensus 245 rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea--~~~~fk~Ya~qVv~NAk~La~ 322 (463)
T d2a7va1 245 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA--CTPMFREYSLQVLKNARAMAD 322 (463)
T ss_dssp SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHH
Confidence 999999865 556666654333333333333 33333343321 134566777888889999999
Q ss_pred HhcccCCceecCC-CCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCC-----CCCeEEEEeec-
Q 018665 255 SFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYAA- 327 (352)
Q Consensus 255 ~l~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~-----~~~~iRi~~~~- 327 (352)
.|.+. |+.++.. .....+++++.... .+.....+.|. +.||.+.-....+ .+..+||..+.
T Consensus 323 ~L~~~-G~~vv~ggTdnHlvlvdl~~~~----------~~G~~ae~~Le-~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~ 390 (463)
T d2a7va1 323 ALLER-GYSLVSGGTDNHLVLVDLRPKG----------LDGARAERVLE-LVSITANKNTCPGDRSAITPGGLRLGAPAL 390 (463)
T ss_dssp HHHHT-TCEEGGGSCSSSEEEEECTTTT----------CCHHHHHHHHH-HTTEECEEECCTTCCCSSSCSEEEEESHHH
T ss_pred HHHhC-CCeeecCCCCCceeeeeccccC----------CCHHHHHHHHH-hccCccCCccCCCCCCCCCCCceEeCCHHH
Confidence 99987 9888743 45566788875421 15666655555 5699876443332 24579998865
Q ss_pred -----CHHHHHHHHHHHHHHHh
Q 018665 328 -----SLTTLQAAVERIKKGLL 344 (352)
Q Consensus 328 -----~~~~l~~~~~~l~~~~~ 344 (352)
.++|+.+..+.|.+++.
T Consensus 391 TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 391 TSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHH
Confidence 66899999888887774
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.67 E-value=4.9e-16 Score=137.62 Aligned_cols=283 Identities=10% Similarity=0.023 Sum_probs=169.0
Q ss_pred HHHHHHHHhcCCCCC-CCcEEEeCChHHHH-HHHHHHhcCCCCEEEecCCCCC--ChHHHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYT-PDQILVSNGAKQSI-LQAVLAVCSPGDEVIIPAPFWV--SYPEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~-~~~i~~~~g~~~a~-~~~~~~l~~~~~~vl~~~~~~~--~~~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ .+ ..+|++++|++++. ..+...+..+++++++...... .+...++..|..+..++.+... .
T Consensus 55 ~~l~~l~~-----~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~--~ 127 (361)
T d2c0ra1 55 ARLLALLG-----NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASN--Y 127 (361)
T ss_dssp HHHHHHTT-----CCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGT--T
T ss_pred HHHHHHhC-----CCCCCEEEEECCCchHHHHHHHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeecccccc--c
Confidence 55656654 32 33677776666554 6666677888888876654333 2346788899999999887443 3
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
++++.+++.++.+.. +. .+|.||...+ ++++.++|+++ |+++++|.+++. +..+..+.. -.+
T Consensus 128 ~~~~~~~~~~~~~~~-~~---v~~~tg~~~~---~~~i~~~~~~~-~al~~vDavss~----g~~~id~~~------~di 189 (361)
T d2c0ra1 128 MTLPKLQEIQLQDNA-AY---LHLTSNETIE---GAQFKAFPDTG-SVPLIGDMSSDI----LSRPFDLNQ------FGL 189 (361)
T ss_dssp CSCCCGGGCCCCTTE-EE---EEEESEETTT---TEECSSCCCCT-TSCEEEECTTTT----TSSCCCGGG------CSE
T ss_pred cchhhhhhhcccCcc-eE---EEEeccccee---cceEEEeeccC-CceEEEEeeccc----ccccccccc------cee
Confidence 678888887765442 22 3567888888 77788899999 999999999976 333333332 226
Q ss_pred EEeccccccccccceeEEEEcChhH------------HHHHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHF------------VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
.+.|.+|.++++|. .++++..+.. ........... ..+++.....+........ ..........+
T Consensus 190 ~~~s~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 266 (361)
T d2c0ra1 190 VYAGAQKNLGPSGV-TVVIVREDLVAESPKHLPTMLRYDTYVKNNSLY-NTPPSFGIYMVNEVLKWIE-ERGGLEGVQQA 266 (361)
T ss_dssp EEEETTTTTCCSSC-EEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCS-SCCCHHHHHHHHHHHHHHH-HTTHHHHHHHH
T ss_pred EEEecccccccccC-cEEEEEhHHhhhCcccccccccccccccccccc-ccccceeeehhhhHHHhhh-hccchHHHHHH
Confidence 67788999986653 3333332221 11111111111 1222222222222222110 12333444444
Q ss_pred HHHHHHHHHHHhcccCCc-eec---CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCe
Q 018665 245 FRERRDFLVKSFGELEGV-KMS---EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 320 (352)
Q Consensus 245 ~~~~~~~l~~~l~~~~g~-~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~ 320 (352)
.++.+..+.......... ... ..++...+.+.+++.. ++.++.+.|.+ .||.+..|..+ -+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~-----------~~~~~~~~L~~-~GI~~~~G~~~--~g~ 332 (361)
T d2c0ra1 267 NRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEE-----------LEKEFVKASEQ-EGFVGLKGHRS--VGG 332 (361)
T ss_dssp HHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHH-----------HHHHHHHHHHH-TTEESCBCCTT--TCS
T ss_pred HHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcc-----------cHHHHHHHHHH-CCCEEecCCCc--CCe
Confidence 555555555544443122 222 1123334566776643 67788888775 49999887432 345
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 321 IRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 321 iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
+||++.. +.||++++++.|+++.++
T Consensus 333 ~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 333 LRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 9999987 899999999999998765
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=3.7e-14 Score=126.17 Aligned_cols=297 Identities=14% Similarity=0.116 Sum_probs=197.4
Q ss_pred cCCCCCChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEecCCCCCChHHH----HH
Q 018665 4 VRVSQGTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPEM----AR 78 (352)
Q Consensus 4 y~~~~~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~~~~vl~~~~~~~~~~~~----~~ 78 (352)
|.|......|+.+++|.+.+++..+ .+.-+.-+-.|+++....++.+.. .+.+++++...+|+.+... ++
T Consensus 98 yqpE~sQG~Lq~l~e~q~~l~eltG-----md~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~ 172 (437)
T d1wyua1 98 YQPEVSQGVLQATFEYQTMIAELAG-----LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLE 172 (437)
T ss_dssp CSGGGCHHHHHHHHHHHHHHHHHHT-----SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhC-----CCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcc
Confidence 3344444567778889999999998 666677777888887776665542 2446899999999877654 45
Q ss_pred hcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccC
Q 018665 79 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 158 (352)
Q Consensus 79 ~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~ 158 (352)
..|++++.++.+... .+.++ +++++.++++.+||. .|..-+ ++++.+++++. |.++++|..... ..
T Consensus 173 ~~g~~vv~v~~~~~~---~~~~~----~~~~~Aavmi~~Pnt-~G~~ed---~~~i~~~~h~~-G~l~~~~ad~~a--l~ 238 (437)
T d1wyua1 173 AVGAKLLTLPLEGGR---TPLPE----VGEEVGAVVVQNPNF-LGALED---LGPFAEAAHGA-GALFVAVADPLS--LG 238 (437)
T ss_dssp HTTCEEEEECCBTTB---CCCCC----CCTTEEEEEEESSCT-TSBCCC---HHHHHHHHHHT-TCEEEEECCTTG--GG
T ss_pred cceeeEEeeeccccc---chhhh----hccceeEEEEccccc-cccccc---hHHHHHHhhhc-cceEEeeechhh--hh
Confidence 689999999976322 23222 567999999999976 577766 89999999999 998886643221 11
Q ss_pred CCCccccccCCCCCCceEEEecccccc----ccccceeEEEEcChhHHHHHH----------------------------
Q 018665 159 PATHTSFASLPGMWERTLTVNGFSKAF----AMTGWRLGYIAGPKHFVAACN---------------------------- 206 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~i~~~s~sK~~----g~~g~~~g~l~~~~~~~~~~~---------------------------- 206 (352)
+ ..-+.+.+-+|++++ +|.| |.+|...|++.+.+++.+.+.
T Consensus 239 ~------l~~Pg~~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIr 311 (437)
T d1wyua1 239 V------LKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIR 311 (437)
T ss_dssp T------BCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHH
T ss_pred c------cccccccccceEeec-cceeccccCCCcCccccccccchhhccccccccccccccCCcccceeeccccccccc
Confidence 1 111122344488887 5554 334566899988887766532
Q ss_pred hhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE-EEeecCCccCCcc
Q 018665 207 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY-LFIDFSTYYGSEA 285 (352)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~-~~~~~~~~~~~~~ 285 (352)
+.....+.+.+....+..+.+.-. .++.+.++++.+....+..++.+.|.+++|+....+..-+. +.++++.
T Consensus 312 Rekatsnict~q~l~a~~a~~Y~~-~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~------ 384 (437)
T d1wyua1 312 RAKAKSNITTNAQLTALMGAMYLA-ALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPK------ 384 (437)
T ss_dssp GGGSSCCCCSCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSS------
T ss_pred ccccccchhhHHHHHHHHHHHHhh-hcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCC------
Confidence 111112223333332222221111 12468899999999999999999999988888765443222 3345443
Q ss_pred cCCCCCCChHHHHHHHHHccCEEeccCCC---CCCCCeEEEEeec--CHHHHHHHHHHHHHHH
Q 018665 286 EGFGKIENSESLCRYLLDKAQVALVPGDA---FGDDTCIRISYAA--SLTTLQAAVERIKKGL 343 (352)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~gi~i~~g~~---~~~~~~iRi~~~~--~~~~l~~~~~~l~~~~ 343 (352)
++.++.++|.+. |+.. +.. ...++.+.+++.- +.+|||++++.|++++
T Consensus 385 -------~~~~i~k~L~d~-G~~~--~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 385 -------DPEAVRRALAER-GFHG--ATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp -------CHHHHHHHHHHT-TCCC--CEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -------CHHHHHHHHHhC-CCCC--CcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 788999999976 7742 221 2246789999986 8899999999999874
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=1.4e-14 Score=127.81 Aligned_cols=286 Identities=12% Similarity=0.017 Sum_probs=170.5
Q ss_pred HHHHHHHHhcCCCCCC-CcEEEeCChHHHHHHHH-HHhcCCCCEEEecCCCCCCh--HHHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTP-DQILVSNGAKQSILQAV-LAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~-~~i~~~~g~~~a~~~~~-~~l~~~~~~vl~~~~~~~~~--~~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ .+. ..|++++|++++...+. ..+..+++.+++....+... ...++..+..++....+... .
T Consensus 53 ~~l~~l~~-----~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 125 (360)
T d1bjna_ 53 KDFRDLLN-----VPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVD--G 125 (360)
T ss_dssp HHHHHHHT-----CCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEET--T
T ss_pred HHHHHHhC-----CCCCCEEEEECCchHHHHhhhhhcccccccccceecccchhhhhHHHHhhcCccceeeccccCC--C
Confidence 88888886 433 36888877777665444 45667777777776555432 35556677777666655333 2
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
.+.++++..+..+++++.+.+.+|.||...+ ++++. ++.+ ++++++|.+.+.. ..+.... +-.+
T Consensus 126 ~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~---~~~i~--~~~~-~~~v~vDa~~~~~----~~~vd~~------~~dv 189 (360)
T d1bjna_ 126 LRAVKPMREWQLSDNAAYMHYCPNETIDGIA---IDETP--DFGA-DVVVAADFSSTIL----SRPIDVS------RYGV 189 (360)
T ss_dssp EEEECCGGGCCCCSSCSCEEECSEETTTTEE---CCCCC--CCCT-TCCEEEECTTTTT----SSCCCGG------GCSE
T ss_pred cchhhhhhhhccCCceeEEEecccccccCcc---cccee--cccc-cceeeeeeecccc----ceeeeec------ccee
Confidence 5666777777778888888888888888877 33333 3566 8999999987752 1122222 2337
Q ss_pred EEeccccccccccceeEEEEcChhHHH------------HHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVA------------ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
++.|.+|.++.++ ..++++.++...+ ........+...+......+....+... .....+...++
T Consensus 190 ~~~ss~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 266 (360)
T d1bjna_ 190 IYAGAQKNIGPAG-LTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLK--ANGGVAEMDKI 266 (360)
T ss_dssp EEEETTTTTSSTT-CEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH--HTTHHHHHHHH
T ss_pred EEEEcccccccCC-CceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHh--hhhhHHHHHHH
Confidence 8899999997454 4555554332211 1111112222222222222222222210 12334445555
Q ss_pred HHHHHHHHHHHhcccCCceecC---CCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCeE
Q 018665 245 FRERRDFLVKSFGELEGVKMSE---PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 321 (352)
Q Consensus 245 ~~~~~~~l~~~l~~~~g~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~i 321 (352)
.++....+...+.......... .++...+.+.+|+.. +..++.+.|.++ ||.+..|... -+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~-----------~~~~~~~~l~~~-Gi~~~~G~~~--~g~~ 332 (360)
T d1bjna_ 267 NQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSA-----------LDKLFLEESFAA-GLHALKGHRV--VGGM 332 (360)
T ss_dssp HHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGG-----------GHHHHHHHHHHT-TEECCBCCTT--TCSE
T ss_pred HHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcc-----------cHHHHHHHHHHC-CCEeecCCCc--cCeE
Confidence 5555555555555442322221 122234566777653 677888887765 9998877422 3469
Q ss_pred EEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 322 RISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 322 Ri~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
|+|+.. ++||++++++.|+++.+..
T Consensus 333 Ris~~~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 333 RASIYNAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence 999976 8999999999999987654
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.52 E-value=8.3e-13 Score=118.82 Aligned_cols=303 Identities=15% Similarity=0.093 Sum_probs=197.0
Q ss_pred CChhhhccchhhHHHHHHHHhcCCCCCCCcEEEeCChHHHHHHHHHHhc---CCC----CEEEecCCCCC-ChHHHHHhc
Q 018665 9 GTLQMRVLWSFVQQFVINLKENGLSYTPDQILVSNGAKQSILQAVLAVC---SPG----DEVIIPAPFWV-SYPEMARIA 80 (352)
Q Consensus 9 ~~~~l~~~~~~~~~ia~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~~~----~~vl~~~~~~~-~~~~~~~~~ 80 (352)
....|+.+++|...++++.+ ++-.+.-+-.|+|++-+.+..+.. +++ ..+++..+.+. .........
T Consensus 101 SQG~LQalfEfQtmi~eLTG-----MdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (471)
T d1wyub1 101 AQGALRLMWELGEYLKALTG-----MDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMA 175 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-----CSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhC-----CCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecc
Confidence 44568889999999999998 665566666777766665554431 111 23444444444 444566677
Q ss_pred CCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCC
Q 018665 81 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 160 (352)
Q Consensus 81 g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~ 160 (352)
+..++.++.+ .....+.+.+.....+++.++++.+|++..+.... .+++++++++. +..+++|.+...... +
T Consensus 176 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~---~~~~~~~~h~~-g~~~~~~~~~~~~~~-~- 247 (471)
T d1wyub1 176 GYQVREIPSG--PEGEVDLEALKRELGPHVAALMLTNPNTLGLFERR---ILEISRLCKEA-GVQLYYDGANLNAIM-G- 247 (471)
T ss_dssp TCEEEEECBC--TTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTT---HHHHHHHHHHH-TCEEEEEGGGGGGTT-T-
T ss_pred cceeeccccc--ccccccchhhhhhhhccccceeeccCCCcccccch---hhhhHHHHHhc-cccccccccchhhhh-h-
Confidence 8888888865 34457899999988889999999999987766555 78888888898 887777765443211 1
Q ss_pred CccccccCCCCCCceEEEecccccc----ccccceeEEEEcChhHHHHHHhh----------------hh--ccccCCCh
Q 018665 161 THTSFASLPGMWERTLTVNGFSKAF----AMTGWRLGYIAGPKHFVAACNKI----------------QS--QFTSGASS 218 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~i~~~s~sK~~----g~~g~~~g~l~~~~~~~~~~~~~----------------~~--~~~~~~~~ 218 (352)
+...+. .+-++++...++.+ |.+|..+|++.+.+++++.+... ++ ....+.|.
T Consensus 248 ----l~~p~~-~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnq 322 (471)
T d1wyub1 248 ----WARPGD-MGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGN 322 (471)
T ss_dssp ----TCCHHH-HTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSC
T ss_pred ----ccccCc-ccccccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhh
Confidence 111111 12224444455554 33566789999999888775311 00 01112332
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhcccCCceecCCCCceE--EEeecCCccCCcccCCCCCCChHH
Q 018665 219 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSES 296 (352)
Q Consensus 219 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~ 296 (352)
. ..++++++-...++.+.++++.....++.+++.++|+. +|+++..+. .+| +.++++... +..+
T Consensus 323 a-L~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~-~ff~EFvv~~~~~~-----------~~~~ 388 (471)
T d1wyub1 323 F-LALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVPYDG-PSMHEFVAQPPEGF-----------RALD 388 (471)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCS-SCCSCEEEBCSTTC-----------CHHH
T ss_pred H-HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceeccCc-ceeeEEeecCCCCC-----------CHHH
Confidence 2 22222222211235889999999999999999999976 588875433 232 445666543 6788
Q ss_pred HHHHHHHccCEEeccCCCCC---CCCeEEEEeec--CHHHHHHHHHHHHHHHhhh
Q 018665 297 LCRYLLDKAQVALVPGDAFG---DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 346 (352)
Q Consensus 297 ~~~~l~~~~gi~i~~g~~~~---~~~~iRi~~~~--~~~~l~~~~~~l~~~~~~~ 346 (352)
+.++|++. |+.- +.... .++.+-+++.- +.+|||++++.|++++++.
T Consensus 389 i~k~L~~~-G~~~--~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~ 440 (471)
T d1wyub1 389 LAKGLLEL-GFHP--PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKP 440 (471)
T ss_dssp HHHHHHHT-TCCC--CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHc-CCCC--CcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999976 7642 32222 25678888876 8899999999999999865
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.50 E-value=7e-14 Score=123.36 Aligned_cols=283 Identities=10% Similarity=-0.004 Sum_probs=156.3
Q ss_pred HHHHHHHHhcCCCCCCC-cEEEeCChHHHHHHHHH-HhcCCCCEEEecCCCCCChH--HHHHhcCCeEEEecccCCCCcc
Q 018665 21 QQFVINLKENGLSYTPD-QILVSNGAKQSILQAVL-AVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFL 96 (352)
Q Consensus 21 ~~ia~~~~~~~~~~~~~-~i~~~~g~~~a~~~~~~-~l~~~~~~vl~~~~~~~~~~--~~~~~~g~~v~~i~~~~~~~~~ 96 (352)
+.++++++ ++.+ .|++++|++++...+.. .+..+++.+++....+.+.. ..++..+..++........ .
T Consensus 55 ~~l~~l~~-----~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 127 (360)
T d1w23a_ 55 NLLRELLQ-----IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANS--Y 127 (360)
T ss_dssp HHHHHHHT-----CCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGT--S
T ss_pred HHHHHHhC-----CCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeecccccc--c
Confidence 88888886 4444 67888888777665444 45667777777765544333 4555666666665544222 2
Q ss_pred cCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEecccccccccCCCCccccccCCCCCCceE
Q 018665 97 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 176 (352)
Q Consensus 97 ~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~livD~~~~~~~~~~~~~~~~~~~~~~~~~~i 176 (352)
..++.++...... ..+ +..|.||...| ++++.++|+++ |+++|+|.+++.. ..+..+.. ++ +
T Consensus 128 ~~~~~~~~~~~~~-~~~---~~~~~tg~~~~---~~~i~~~~~~~-g~l~ivDavqs~g----~~~id~~~----~~--v 189 (360)
T d1w23a_ 128 QSIPDFSEFQLNE-NDA---YLHITSNNTIY---GTQYQNFPEIN-HAPLIADMSSDIL----SRPLKVNQ----FG--M 189 (360)
T ss_dssp CSCCCGGGCCCCT-TEE---EEEEESEETTT---TEECSSCCCCC-SSCEEEECTTTTT----SSCCCGGG----CS--E
T ss_pred cchhhhhhccccc-ccc---eeEecCCcccc---ceeeeeccccc-eeeEEeecccccc----cccccccc----cc--c
Confidence 3445555544322 222 33456799999 88888999999 9999999999863 22333332 23 5
Q ss_pred EEeccccccccccceeEEEEcChhHHH------------HHHhhhhccccCCChHHHHHHHHHhcccCCChHHHHHHHHH
Q 018665 177 TVNGFSKAFAMTGWRLGYIAGPKHFVA------------ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 244 (352)
Q Consensus 177 ~~~s~sK~~g~~g~~~g~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (352)
.+.+++|..+++| ..|+++.++...+ ..... ......+......+....+.... .........+.
T Consensus 190 d~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 266 (360)
T d1w23a_ 190 IYAGAQKNLGPSG-VTVVIVKKDLLNTKVEQVPTMLQYATHIKS-DSLYNTPPTFSIYMLRNVLDWIK-DLGGAEAIAKQ 266 (360)
T ss_dssp EEEETTTTTSCTT-CEEEEEEHHHHCSCCTTCCGGGCHHHHHHT-TTCSSCCCHHHHHHHHHHHHHHH-HTTHHHHHHHH
T ss_pred eEEeeccccccCC-cceeeEechhhhcccccCCcchhhhhhhhh-hhhcccccceeeechhHHHHHHh-hhhhhHHHHHH
Confidence 5566667665444 3455543332211 11111 11222233333332222222100 01222233333
Q ss_pred HHHHHHHHHHHhcccCCceec----CCCCceEEEeecCCccCCcccCCCCCCChHHHHHHHHHccCEEeccCCCCCCCCe
Q 018665 245 FRERRDFLVKSFGELEGVKMS----EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 320 (352)
Q Consensus 245 ~~~~~~~l~~~l~~~~g~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~i~~g~~~~~~~~ 320 (352)
.+................... ..++...+.+.+++.. ...++.+.|.++ ||.+..|..+ -+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~-----------~~~~~~~~l~~~-GI~~~~G~~~--~gg 332 (360)
T d1w23a_ 267 NEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEE-----------LNQQFLAKAKEQ-GFVGLNGHRS--VGG 332 (360)
T ss_dssp HHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHH-----------HHHHHHHHHHHT-TEESCBCCTT--TCS
T ss_pred HHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCc-----------cHHHHHHHHHHC-CCeeeeCCCc--cCc
Confidence 333333333333322122221 1222334666776542 567888877755 9998776443 346
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHhh
Q 018665 321 IRISYAA--SLTTLQAAVERIKKGLLT 345 (352)
Q Consensus 321 iRi~~~~--~~~~l~~~~~~l~~~~~~ 345 (352)
+|+|+.. +.||++++++.++++.+.
T Consensus 333 iRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 333 CRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 9999866 899999999999998764
|
| >d1ofux_ c.37.1.22 (X:) Hypothetical protein PA3008 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Bacterial cell division inhibitor SulA domain: Hypothetical protein PA3008 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.60 E-value=1.6 Score=29.71 Aligned_cols=104 Identities=9% Similarity=-0.047 Sum_probs=63.6
Q ss_pred cEEEeCChHHHHHHHHHHh---cCC--CCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeE
Q 018665 38 QILVSNGAKQSILQAVLAV---CSP--GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL 112 (352)
Q Consensus 38 ~i~~~~g~~~a~~~~~~~l---~~~--~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~ 112 (352)
++.....+.+.+..++-.+ ... +.-|+.-.|-+.++...++..|++...+-+-...+..-.+-.+|+.++.+...
T Consensus 6 el~~~~~~~~~l~LL~P~L~~l~~~~~~rwi~wI~Pp~~p~a~~L~~~Gi~~~rll~v~~~~~~d~lwa~EqaL~sg~~~ 85 (119)
T d1ofux_ 6 ELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSH 85 (119)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEE
T ss_pred eecccCCcHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCccCHHHHHHcCCCCCeEEEEeCCChHHHHHHHHHHHhcCCcc
Confidence 4455555655555444433 332 23488888888999999999998543333221122112345577777766666
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 018665 113 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 147 (352)
Q Consensus 113 i~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~~li 147 (352)
.|+..+.+ ++...++++--.|++. +...+
T Consensus 86 aVl~w~~~-----l~~~~~RRLqlAA~~g-~t~~~ 114 (119)
T d1ofux_ 86 TVVSWLEP-----LSRAARKQLSRAAQLG-QAQSL 114 (119)
T ss_dssp EEEECCSS-----CCHHHHHHHHHHHHHH-TCEEE
T ss_pred EEEEcCCC-----CChHHHHHHHHHHHhc-CCEEE
Confidence 66665532 5667788888888887 76554
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=84.13 E-value=1.2 Score=30.08 Aligned_cols=77 Identities=10% Similarity=0.145 Sum_probs=56.9
Q ss_pred CCEEEecCCCCCChHHHHHhcCCeEEEecccCCCCcccCHHHHHhhccCCeeEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 018665 60 GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA 139 (352)
Q Consensus 60 ~~~vl~~~~~~~~~~~~~~~~g~~v~~i~~~~~~~~~~d~~~l~~~l~~~~~~i~i~~p~nptG~~~~~~~l~~l~~~~~ 139 (352)
+..-...-|.|.+..++.+..|.+...+=+++. .-.|...++++.+.+++++..-+ .|..++.++.+.++
T Consensus 42 gG~~~~giPVf~sV~eAv~~~~~~~SvIfVPp~----~a~dA~~EAi~agI~~iV~ITEg------IP~~D~~~i~~~~~ 111 (119)
T d2nu7a1 42 GGTTHLGLPVFNTVREAVAATGATASVIYVPAP----FCKDSILEAIDAGIKLIITITEG------IPTLDMLTVKVKLD 111 (119)
T ss_dssp TTEEETTEEEESSHHHHHHHHCCCEEEECCCGG----GHHHHHHHHHHTTCSEEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCcccCCCchhhHHHHHHHHhCCCeEEEeccHH----HHHHHHHHHHHCCCCEEEEecCC------CCHHHHHHHHHHHh
Confidence 344455668999999999988876655555432 35677788888899998887665 45566888899998
Q ss_pred hCCCEEEE
Q 018665 140 KHPRLLVL 147 (352)
Q Consensus 140 ~~~~~~li 147 (352)
+. ++.+|
T Consensus 112 ~~-~~~li 118 (119)
T d2nu7a1 112 EA-GVRMI 118 (119)
T ss_dssp HH-TCEEE
T ss_pred hC-CCEEe
Confidence 88 88776
|