Citrus Sinensis ID: 018690

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKVFFIYMLSSDQYCSLTQSQYPLMFSYYLQDS
Secondary Structure (PSIPRED)
ccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccccccccEEEEcHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccccHcccccccccccccccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccEEEcccccccccccccccccccccccccEcccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
meqrqrqrqhlqhptstskaidpenvkvieWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMIsqvsflypvkilvgpkqeqelesfpsgnrsgnsaaskpvnpgsltiLGLHLtilpftkmslftdkkeVQRSATALGYIAHVVSLIASYLevplryplrlggshtyindyapsieptsdlssnialstntkpaefplflegqdATRAAYAVFLLNKVFFIYMLSSDQYCSLTQSQYPLMFSYYLQDS
Flexible Loop (DISEMBL)
meqrqrqrqhlqhptstskaidpenvKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVkaeslkrsneleeMRERLEARRLLMekmsmrskvekedaknqeerLSMEVRSLLVAGTALSVARKRLQEsnrllagekgyGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKVFFIYMLSSDQYCSLTQSQYPLMFSYYLQDS
Low Complexity Region (SEG)
MEqrqrqrqHLQHPTSTSKAIDPENVKVIEWEDYDQElarlwslssalsqaDDkkqtlqqklqsliqVKAESLKRSNeleemrerlearrllmeKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKVFFIYMLSSDQYCSLTQSQYPLMFSYYLQDS
Disordered region (IsUnstruct)
*************************VKVIEWEDYDQELARLWSL****************************************************************************LLVAGTALSVARK******RLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVG****************************SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSI*****************PAEFPLFLEGQDATRAAYAVFLLNKVFFIYMLSSDQYCSLTQSQYPLMFSYYL***
Disordered Region (DISOPRED)
*********************************YDQELARLWSLSSALSQ*****************************************************************************************************QKLQKMLRMRQQFMISQVSFLYPVKILVGP***************************SLTILGLHLTILP***********EVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSI*****************PAEFPLFLEGQDATRAAYAVFLLNKVFFIYMLSSDQYCSLTQSQYPLMFSYYLQD*
Disordered Region (DISEMBL)
*****************SKAIDPENVKVIEWEDYDQELARLWSLSSA************QKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSM**************RLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQ********************PVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKVFFIYMLSSDQYCSLTQSQYPLMFSYYLQDS
Disordered Region (DISPRO)
***********************ENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQ*QELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSI****************KPAEFPLFLEGQDATRAAYAVFLLNKVFFIYMLSSDQYCSLTQSQYPLMFSYYLQD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKVFFIYMLSSDQYCSLTQSQYPLMFSYYLQDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
Q9P2Y5	699	UV radiation resistance-a	yes	no	0.650	0.327	0.268	4e-11

>sp|Q9P2Y5|UVRAG_HUMAN UV radiation resistance-associated gene protein OS=Homo sapiens GN=UVRAG PE=1 SV=1

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 62/291 (21%)

Query: 38  LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMS 97
           L RL     A+ Q     Q   QK+   I+ K      SNEL++  E L+ + L+++   
Sbjct: 196 LLRLHRAQCAIKQT----QVTVQKIGKEIEEKLRLTSTSNELKKKSECLQLKILVLQNEL 251

Query: 98  MRSK--VEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQ---ESNRLLAGEKGYGH-- 150
            R K  + +E A   +++++++ +     G+A S    +LQ   ES   L  E       
Sbjct: 252 ERQKKALGREVALLHKQQIALQDK-----GSAFSAEHLKLQLQKESLNELRKECTAKREL 306

Query: 151 LQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSL 210
             K    L +R + ++S++S++YP+ +       +  + F  G +  NS   +  + GS+
Sbjct: 307 FLKTNAQLTIRCRQLLSELSYIYPIDL------NEHKDYFVCGVKLPNSEDFQAKDDGSI 360

Query: 211 TILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHT 270
                                      A ALGY AH+VS+I+ +L+VPLRYP+   GS +
Sbjct: 361 ---------------------------AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRS 393

Query: 271 YINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNK 321
            I D             NI      K  EFPL+ +G +  +  Y V+LLNK
Sbjct: 394 TIKD-------------NINDKLTEKEREFPLYPKGGEKLQFDYGVYLLNK 431

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
449442479	359	PREDICTED: UV radiation resistance-assoc	0.852	0.835	0.734	1e-124
449505315	359	PREDICTED: LOW QUALITY PROTEIN: UV radia	0.852	0.835	0.727	1e-123
255554070	356	conserved hypothetical protein [Ricinus	0.900	0.890	0.692	1e-123
225433608	345	PREDICTED: UV radiation resistance-assoc	0.860	0.878	0.718	1e-120
224141253	333	predicted protein [Populus trichocarpa]	0.838	0.885	0.696	1e-111
356525229	354	PREDICTED: uncharacterized protein LOC10	0.849	0.844	0.673	1e-110
297823059	353	hypothetical protein ARALYDRAFT_482212 [	0.843	0.841	0.654	1e-108
30685426	352	uncharacterized protein [Arabidopsis tha	0.840	0.840	0.651	1e-107
357518775	355	UV radiation resistance-associated gene	0.852	0.845	0.647	1e-106
20197059	293	hypothetical protein [Arabidopsis thalia	0.681	0.819	0.644	8e-84

>gi|449442479|ref|XP_004139009.1| PREDICTED: UV radiation resistance-associated gene protein-like [Cucumis sativus]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/301 (73%), Positives = 254/301 (84%), Gaps = 1/301 (0%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           DPEN KVIEWED++QELARLWSLSSAL +A   K++L+QKL SLIQV +ES+ RSNEL E
Sbjct: 21  DPENAKVIEWEDFEQELARLWSLSSALQEAKQHKESLKQKLDSLIQVDSESVSRSNELAE 80

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MRE+LEAR+ ++E M MRSK+  ED K QEE LS+EVRSLLVAGTALS ARKRLQESNRL
Sbjct: 81  MREKLEARKCIVENMGMRSKLVSEDVKKQEESLSIEVRSLLVAGTALSKARKRLQESNRL 140

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L+GE+GY  L+ LQKMLR RQQFM+SQV+FLYPVKIL GP  +QELESFPS +R GNS+ 
Sbjct: 141 LSGEEGYDRLKSLQKMLRRRQQFMVSQVAFLYPVKILTGPANDQELESFPSTSRLGNSSG 200

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           SKPVN GSLTILGL L +LPF KMS F+DKKE QRSA+ALGY+AH VSLI+SYL+VPLRY
Sbjct: 201 SKPVNHGSLTILGLSLNVLPFKKMSFFSDKKETQRSASALGYVAHAVSLISSYLKVPLRY 260

Query: 262 PLRLGGSHTYINDYAPSIEPTSDLS-SNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PLRLGGS +Y+ DYAPSIEPTS ++ S    STN K  EFPLFL+GQD TRAAYAVFLLN
Sbjct: 261 PLRLGGSRSYLCDYAPSIEPTSSVTLSTTQPSTNMKHVEFPLFLDGQDTTRAAYAVFLLN 320

Query: 321 K 321
           K
Sbjct: 321 K 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505315|ref|XP_004162433.1| PREDICTED: LOW QUALITY PROTEIN: UV radiation resistance-associated gene protein-like [Cucumis sativus]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/301 (72%), Positives = 254/301 (84%), Gaps = 1/301 (0%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           DPEN KVIEWED++QELARLWSLSSAL +A   K++L+QKL SLIQV +ES+ RSNEL E
Sbjct: 21  DPENAKVIEWEDFEQELARLWSLSSALQEAKQHKESLKQKLDSLIQVDSESVSRSNELAE 80

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MRE+LEAR+ ++E M MRSK+  ED K QEE LS+EVRSLLVAGTALS ARKRLQESNRL
Sbjct: 81  MREKLEARKCIVENMGMRSKLVSEDVKKQEESLSIEVRSLLVAGTALSKARKRLQESNRL 140

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L+GE+GY  L+ LQKMLR RQQFM+SQV+FLYPVKIL GP  +QELESFPS +R GNS+ 
Sbjct: 141 LSGEEGYDRLKSLQKMLRRRQQFMVSQVAFLYPVKILTGPANDQELESFPSTSRLGNSSG 200

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           SKPVN GSLTILGL+L +LPF KMS F+DKKE QRSA+ALGY+AH VSLI+SYL+VPLRY
Sbjct: 201 SKPVNHGSLTILGLNLNVLPFXKMSFFSDKKETQRSASALGYVAHAVSLISSYLKVPLRY 260

Query: 262 PLRLGGSHTYINDYAPSIEPTSDLS-SNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PLRLGGS +Y+ DYAPSIEPTS ++ S    STN K  E PLFL+GQD TRAAYAVFLLN
Sbjct: 261 PLRLGGSRSYLCDYAPSIEPTSSVTLSTTQPSTNMKHVEXPLFLDGQDTTRAAYAVFLLN 320

Query: 321 K 321
           +
Sbjct: 321 R 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554070|ref|XP_002518075.1| conserved hypothetical protein [Ricinus communis] gi|223542671|gb|EEF44208.1| conserved hypothetical protein [Ricinus communis]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/322 (69%), Positives = 267/322 (82%), Gaps = 5/322 (1%)

Query: 1   MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQ 60
           ME+ ++    L+ P  TS++   E VK+I+WEDY+QE ARLWSLSSAL +A++KK  L+Q
Sbjct: 1   MEEEKKATLSLE-PRKTSES---EKVKLIQWEDYEQEAARLWSLSSALKEAEEKKLNLKQ 56

Query: 61  KLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS 120
           KL S IQVKAESL R NELEEMR++LEA+ L +E +S R+KV  E+AK +E RLSMEVRS
Sbjct: 57  KLNSFIQVKAESLSRLNELEEMRQKLEAKELAIESISARTKVAAENAKKEENRLSMEVRS 116

Query: 121 LLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVG 180
           LLVAGTALSV+ K+LQES R ++GE+GYG L+ LQKMLR+RQQ+ ISQVS L+PVKI  G
Sbjct: 117 LLVAGTALSVSSKQLQESKRSVSGERGYGRLRNLQKMLRIRQQYTISQVSLLFPVKISAG 176

Query: 181 PKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATA 240
           P +EQELESFP+ ++SGN   SKPVN GSLTILGLHLT+LPFTK+S FTDKKE+Q+SATA
Sbjct: 177 PSEEQELESFPNTSKSGNYTGSKPVNQGSLTILGLHLTMLPFTKISFFTDKKEIQKSATA 236

Query: 241 LGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAE 299
           LGY+AH VSLIASYLEVPLRYP+RLGGS +YINDYAPS EPT  +LS + + STN KP E
Sbjct: 237 LGYVAHAVSLIASYLEVPLRYPVRLGGSRSYINDYAPSAEPTLPELSLSASSSTNVKPVE 296

Query: 300 FPLFLEGQDATRAAYAVFLLNK 321
           FPLFLEGQD TRAAYAVFLLNK
Sbjct: 297 FPLFLEGQDTTRAAYAVFLLNK 318

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433608|ref|XP_002273954.1| PREDICTED: UV radiation resistance-associated gene protein [Vitis vinifera] gi|298205154|emb|CBI17213.3| unnamed protein product [Vitis vinifera]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/305 (71%), Positives = 257/305 (84%), Gaps = 2/305 (0%)

Query: 18  SKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSN 77
           ++++  ENVKVIEWED++QELARLWSLSSAL +A +KK +LQ+KL SL+QVKAESL RSN
Sbjct: 4   NQSLSSENVKVIEWEDFEQELARLWSLSSALKEAKEKKDSLQEKLNSLLQVKAESLNRSN 63

Query: 78  ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 137
           ELEEM++RL+ R+ +   MSM+SK+ +ED K +EERL +EVRSLLVAGTALSV+R RLQ+
Sbjct: 64  ELEEMQQRLDDRKFVTGDMSMQSKIVEEDIKKKEERLGLEVRSLLVAGTALSVSRNRLQD 123

Query: 138 SNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSG 197
           +NRLL+GE+GY HL+ L+KMLR+RQQ MISQVSFLYPVK  +G   EQELESFPS +R+G
Sbjct: 124 ANRLLSGERGYVHLKNLEKMLRVRQQHMISQVSFLYPVKPSIG-SLEQELESFPSSSRAG 182

Query: 198 NSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEV 257
           N+  SKP+N GSLTI GL L +L   KMS FTDKKEVQRSATALGY+AH VSLIASYLEV
Sbjct: 183 NAVGSKPLNEGSLTISGLQLNMLAIKKMSFFTDKKEVQRSATALGYVAHAVSLIASYLEV 242

Query: 258 PLRYPLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAV 316
           PLRYPLRLGGS +YINDYAPSIEPT +D  SN  L TN K  EFPLFLEGQD TRAAYAV
Sbjct: 243 PLRYPLRLGGSRSYINDYAPSIEPTPTDSVSNSLLLTNLKHIEFPLFLEGQDTTRAAYAV 302

Query: 317 FLLNK 321
           FLLNK
Sbjct: 303 FLLNK 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141253|ref|XP_002323989.1| predicted protein [Populus trichocarpa] gi|222866991|gb|EEF04122.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/300 (69%), Positives = 247/300 (82%), Gaps = 5/300 (1%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           + E  K IEWEDY+ E+ARLWSLSS+L+++  KKQ  +QKL+SLIQVK E+L R N+LEE
Sbjct: 2   ESEKEKFIEWEDYEHEVARLWSLSSSLNESKQKKQNFEQKLRSLIQVKEEALSRLNKLEE 61

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           M+ER+EAR+L++E++  +SKV  E++  +EERLS EVRSLLVAGTALSVA K+LQ+S R 
Sbjct: 62  MKERVEARKLVIERIKGQSKVAAENSTKEEERLSSEVRSLLVAGTALSVASKQLQDSRRS 121

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           LAGE+GY  L KLQK LR+RQQFMISQVS LYP+KI  GP +EQELESFPS N  G    
Sbjct: 122 LAGERGYVRLTKLQKKLRLRQQFMISQVSLLYPIKISAGPSEEQELESFPSRNYVG---- 177

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           SKPVN GSLTILGLHLT+ PFTKMS FTDKKEVQRSA+ALG++AH VSLIASYLEVPLRY
Sbjct: 178 SKPVNQGSLTILGLHLTMAPFTKMSFFTDKKEVQRSASALGHVAHAVSLIASYLEVPLRY 237

Query: 262 PLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNK 321
            LRLGGS++YI D APS+E +  LSS +  + NTKP EFPLFLEGQD TRAAYAVFLLNK
Sbjct: 238 SLRLGGSNSYIIDCAPSVESSDLLSSTLLTA-NTKPVEFPLFLEGQDTTRAAYAVFLLNK 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525229|ref|XP_003531229.1| PREDICTED: uncharacterized protein LOC100794161 [Glycine max]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/300 (67%), Positives = 246/300 (82%), Gaps = 1/300 (0%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           DP++VKVI+W+D+  +LARL SLSSAL +A++KK+ LQ KL+SLIQV AESL R NELEE
Sbjct: 16  DPDHVKVIQWDDFQHDLARLASLSSALHEANEKKRNLQHKLESLIQVNAESLGRLNELEE 75

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR++LE++++LME MS+ S++ KE+A  QEE+LS  V+SLLV+G ALSV  + LQES+RL
Sbjct: 76  MRQKLESKKMLMENMSICSRLAKEEASKQEEQLSGAVQSLLVSGGALSVTSRNLQESSRL 135

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L+ E GY HL+KLQKMLR RQQ+M SQ+S LYPVKILVGP QEQELE++P G+ +G SA 
Sbjct: 136 LSEENGYVHLRKLQKMLRKRQQYMTSQISMLYPVKILVGPAQEQELEAYPLGSLAGTSAG 195

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
            KP+N GSLTI GLHL +L F KMS FTDKKE+Q SATALGY+AH VSLIASYL+VPLRY
Sbjct: 196 LKPINQGSLTIHGLHLNVLSFRKMSFFTDKKEIQNSATALGYVAHAVSLIASYLQVPLRY 255

Query: 262 PLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNK 321
           PLRLG SH+YI D APS E TS  +S+ A + N K  +FPLFLEGQD TRAAYAVFLLNK
Sbjct: 256 PLRLGASHSYIIDNAPSTELTSSEASSNA-NINAKHVKFPLFLEGQDTTRAAYAVFLLNK 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823059|ref|XP_002879412.1| hypothetical protein ARALYDRAFT_482212 [Arabidopsis lyrata subsp. lyrata] gi|297325251|gb|EFH55671.1| hypothetical protein ARALYDRAFT_482212 [Arabidopsis lyrata subsp. lyrata]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/301 (65%), Positives = 238/301 (79%), Gaps = 4/301 (1%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           D E+VK+IEWE++D EL RLWSLSSAL  A +KKQ LQ KL+SLIQV  ESL+R+NELEE
Sbjct: 17  DREDVKIIEWEEFDHELTRLWSLSSALKLATEKKQILQPKLESLIQVSTESLRRTNELEE 76

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR+RLEAR+LL++K S+  KV ++D K +E+ LS EVRSLLV GT LS+A+ +LQESN  
Sbjct: 77  MRQRLEARKLLVDKTSIACKVIEQDVKKKEDNLSTEVRSLLVGGTTLSIAKSKLQESNCQ 136

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L GE GY HL+ +   LR RQQFMISQVSF+YP+KI  GP Q+QELESFP G+R      
Sbjct: 137 LEGESGYAHLKIVTNKLRKRQQFMISQVSFIYPLKIEAGPSQDQELESFPGGSR---LVG 193

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           +KP++ GS+ ILGL  ++ PFT+MS FTDKKEVQ+SATALGY+AH VSLIA YL +P+RY
Sbjct: 194 TKPLSQGSVRILGLPFSMAPFTRMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRMPIRY 253

Query: 262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PLRLGGS TYI DYAP IEP+ SD+S    LS N+   EFPLFL+GQD TRAAYAVFLLN
Sbjct: 254 PLRLGGSKTYIRDYAPYIEPSQSDMSPITTLSQNSNFVEFPLFLDGQDTTRAAYAVFLLN 313

Query: 321 K 321
           K
Sbjct: 314 K 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685426|ref|NP_850197.1| uncharacterized protein [Arabidopsis thaliana] gi|18700113|gb|AAL77668.1| At2g32760/F24L7.10 [Arabidopsis thaliana] gi|62320642|dbj|BAD95308.1| hypothetical protein [Arabidopsis thaliana] gi|94442409|gb|ABF18992.1| At2g32760 [Arabidopsis thaliana] gi|330253639|gb|AEC08733.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/301 (65%), Positives = 236/301 (78%), Gaps = 5/301 (1%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           D E+ K+IEWE++D EL RLWSLSSA+  A ++KQ LQ KL+SLIQV  ESL+R+NELEE
Sbjct: 17  DREDGKIIEWEEFDHELTRLWSLSSAMKLATERKQILQPKLESLIQVSTESLRRTNELEE 76

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR+RLEAR+LL++K S+  KV ++D K +EE LS EVRSLLV GT LS+A+ +LQESN  
Sbjct: 77  MRQRLEARKLLVDKTSVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQ 136

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L GE GY HL+ +   LR RQQFM+SQVSF+YP+KI  GP Q+QELESFP G+R G    
Sbjct: 137 LEGESGYAHLKIVTNKLRKRQQFMVSQVSFIYPLKIEAGPSQDQELESFPGGSRLG---- 192

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           +KP++ GS+ ILGL  ++ PFTKMS FTDKKEVQ+SATALGY+AH VSLIA YL VP+RY
Sbjct: 193 TKPLSQGSVRILGLPFSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRVPIRY 252

Query: 262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PL LGGS TYI DYAP IEP+ SD+S    LS N    EFPLFL+GQD TRAAYAVFLLN
Sbjct: 253 PLCLGGSKTYIRDYAPYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAAYAVFLLN 312

Query: 321 K 321
           K
Sbjct: 313 K 313

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518775|ref|XP_003629676.1| UV radiation resistance-associated gene protein [Medicago truncatula] gi|355523698|gb|AET04152.1| UV radiation resistance-associated gene protein [Medicago truncatula]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/301 (64%), Positives = 244/301 (81%), Gaps = 1/301 (0%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           DP++V++IEWED++ +LARL SLSSAL+QA +KK+ LQ KL+SLIQ   ESL R NELEE
Sbjct: 15  DPDDVRLIEWEDFEHDLARLSSLSSALNQAKEKKRNLQHKLESLIQFNGESLGRLNELEE 74

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR++LE+++L+ME MS+RS++ KE A  QEE+LS  ++SLLVAG  LSV  + LQES+RL
Sbjct: 75  MRQKLESKKLMMENMSIRSRLAKEAAGKQEEQLSGALQSLLVAGGTLSVTSRNLQESSRL 134

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           ++ E GY  L+ LQKMLRMRQQ+M SQ+S LYPVK+LV P QEQELE++P G+ +G    
Sbjct: 135 MSEENGYVRLRNLQKMLRMRQQYMASQISMLYPVKLLVEPAQEQELEAYPLGSPAGTPPE 194

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
            KPVN GSLTI GLHL++L F KMS FTDKKE+Q+SATALGY+AH VSL+ASYL+VPLRY
Sbjct: 195 LKPVNQGSLTIQGLHLSMLSFRKMSFFTDKKEIQKSATALGYVAHAVSLVASYLQVPLRY 254

Query: 262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           P+RLG SH+YI D APSIE T S+ S++  + TN K  EFPLFLEGQD TRAAYAVFLL+
Sbjct: 255 PVRLGASHSYIIDNAPSIELTSSEASTSTKVFTNAKHVEFPLFLEGQDTTRAAYAVFLLS 314

Query: 321 K 321
           K
Sbjct: 315 K 315

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20197059|gb|AAC04487.2| hypothetical protein [Arabidopsis thaliana]

 Score =  317 bits (811), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 158/245 (64%), Positives = 189/245 (77%), Gaps = 5/245 (2%)

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR+RLEAR+LL++K S+  KV ++D K +EE LS EVRSLLV GT LS+A+ +LQESN  
Sbjct: 1   MRQRLEARKLLVDKTSVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQ 60

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L GE GY HL+ +   LR RQQFM+SQVSF+YP+KI  GP Q+QELESFP G+R G    
Sbjct: 61  LEGESGYAHLKIVTNKLRKRQQFMVSQVSFIYPLKIEAGPSQDQELESFPGGSRLG---- 116

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           +KP++ GS+ ILGL  ++ PFTKMS FTDKKEVQ+SATALGY+AH VSLIA YL VP+RY
Sbjct: 117 TKPLSQGSVRILGLPFSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRVPIRY 176

Query: 262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PL LGGS TYI DYAP IEP+ SD+S    LS N    EFPLFL+GQD TRAAYAVFLLN
Sbjct: 177 PLCLGGSKTYIRDYAPYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAAYAVFLLN 236

Query: 321 KVFFI 325
           K+  I
Sbjct: 237 KIISI 241

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
TAIR|locus:2046362	352	AT2G32760 "AT2G32760" [Arabido	0.840	0.840	0.541	1.1e-76
UNIPROTKB|F1NDB2	659	UVRAG "Uncharacterized protein	0.201	0.107	0.416	1.8e-07
UNIPROTKB|F1NAL8	679	UVRAG "Uncharacterized protein	0.201	0.104	0.416	2e-07
RGD|1589754	698	Uvrag "UV radiation resistance	0.201	0.101	0.416	4.6e-07
UNIPROTKB|I3L6L5	537	UVRAG "Uncharacterized protein	0.201	0.132	0.404	4.6e-07
UNIPROTKB|F1PYG4	699	UVRAG "Uncharacterized protein	0.201	0.101	0.416	5.8e-07
UNIPROTKB|E9PR71	598	UVRAG "UV radiation resistance	0.201	0.118	0.416	6.1e-07
UNIPROTKB|Q9P2Y5	699	UVRAG "UV radiation resistance	0.201	0.101	0.416	9.3e-07
UNIPROTKB|F1N3U6	699	UVRAG "Uncharacterized protein	0.201	0.101	0.416	1.2e-06
DICTYBASE|DDB_G0288175	824	DDB_G0288175 "UV radiation res	0.579	0.247	0.255	3.7e-06

TAIR|locus:2046362 AT2G32760 "AT2G32760" [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 163/301 (54%), Positives = 196/301 (65%)

Query:    22 DPENVKVIEWEDYDQEXXXXXXXXXXXXXXDDXXXXXXXXXXXXXXVKAESLKRSNXXXX 81
             D E+ K+IEWE++D E               +              V  ESL+R+N    
Sbjct:    17 DREDGKIIEWEEFDHELTRLWSLSSAMKLATERKQILQPKLESLIQVSTESLRRTNELEE 76

Query:    82 XXXXXXXXXXXXXKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
                          K S+  KV ++D K +EE LS EVRSLLV GT LS+A+ +LQESN  
Sbjct:    77 MRQRLEARKLLVDKTSVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQ 136

Query:   142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
             L GE GY HL+ +   LR RQQFM+SQVSF+YP+KI  GP Q+QELESFP G+R G    
Sbjct:   137 LEGESGYAHLKIVTNKLRKRQQFMVSQVSFIYPLKIEAGPSQDQELESFPGGSRLG---- 192

Query:   202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
             +KP++ GS+ ILGL  ++ PFTKMS FTDKKEVQ+SATALGY+AH VSLIA YL VP+RY
Sbjct:   193 TKPLSQGSVRILGLPFSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRVPIRY 252

Query:   262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
             PL LGGS TYI DYAP IEP+ SD+S    LS N    EFPLFL+GQD TRAAYAVFLLN
Sbjct:   253 PLCLGGSKTYIRDYAPYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAAYAVFLLN 312

Query:   321 K 321
             K
Sbjct:   313 K 313

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NDB2 UVRAG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 136 (52.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 35/84 (41%), Positives = 47/84 (55%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   322 AVALGYTAHLVSMISYFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 368

Query:   298 AEFPLFLEGQDATRAAYAVFLLNK 321
              EFPL+ +G +  +  Y V+LLNK
Sbjct:   369 REFPLYPKGGEKLQFEYGVYLLNK 392

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|F1NAL8 UVRAG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 136 (52.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
 Identities = 35/84 (41%), Positives = 47/84 (55%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   342 AVALGYTAHLVSMISYFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 388

Query:   298 AEFPLFLEGQDATRAAYAVFLLNK 321
              EFPL+ +G +  +  Y V+LLNK
Sbjct:   389 REFPLYPKGGEKLQFEYGVYLLNK 412

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

RGD|1589754 Uvrag "UV radiation resistance associated gene" [Rattus norvegicus (taxid:10116)]

 Score = 135 (52.6 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
 Identities = 35/84 (41%), Positives = 47/84 (55%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   360 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 406

Query:   298 AEFPLFLEGQDATRAAYAVFLLNK 321
              EFPL+ +G +  +  Y V+LLNK
Sbjct:   407 REFPLYPKGGEKLQFDYGVYLLNK 430

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|I3L6L5 UVRAG "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 134 (52.2 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
 Identities = 34/84 (40%), Positives = 47/84 (55%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+++ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   199 AVALGYTAHLVSMVSFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 245

Query:   298 AEFPLFLEGQDATRAAYAVFLLNK 321
              EFPL+ +G +  +  Y V+LLNK
Sbjct:   246 REFPLYPKGGEKLQFDYGVYLLNK 269

GO:0010508 "positive regulation of autophagy" evidence=IEA

UNIPROTKB|F1PYG4 UVRAG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 135 (52.6 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
 Identities = 35/84 (41%), Positives = 47/84 (55%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   361 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 407

Query:   298 AEFPLFLEGQDATRAAYAVFLLNK 321
              EFPL+ +G +  +  Y V+LLNK
Sbjct:   408 REFPLYPKGGEKLQFDYGVYLLNK 431

GO:0043234 "protein complex" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0010508 "positive regulation of autophagy" evidence=IEA

UNIPROTKB|E9PR71 UVRAG "UV radiation resistance-associated gene protein" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
 Identities = 35/84 (41%), Positives = 47/84 (55%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   260 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 306

Query:   298 AEFPLFLEGQDATRAAYAVFLLNK 321
              EFPL+ +G +  +  Y V+LLNK
Sbjct:   307 REFPLYPKGGEKLQFDYGVYLLNK 330

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|Q9P2Y5 UVRAG "UV radiation resistance-associated gene protein" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
 Identities = 35/84 (41%), Positives = 47/84 (55%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   361 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 407

Query:   298 AEFPLFLEGQDATRAAYAVFLLNK 321
              EFPL+ +G +  +  Y V+LLNK
Sbjct:   408 REFPLYPKGGEKLQFDYGVYLLNK 431

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005770 "late endosome" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0006281 "DNA repair" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

UNIPROTKB|F1N3U6 UVRAG "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 134 (52.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 35/84 (41%), Positives = 47/84 (55%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   361 AVALGYTAHLVSMISFFLQVPLRYPVIHKGSRSTIKD-------------NINDKLTEKE 407

Query:   298 AEFPLFLEGQDATRAAYAVFLLNK 321
              EFPL+ +G +  +  Y V+LLNK
Sbjct:   408 REFPLYPKGGEKLQFDYGVYLLNK 431

GO:0043234 "protein complex" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0010508 "positive regulation of autophagy" evidence=IEA

DICTYBASE|DDB_G0288175 DDB_G0288175 "UV radiation resistance-associated gene protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 138 (53.6 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 60/235 (25%), Positives = 110/235 (46%)

Query:    97 SMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKR-LQESNRLLAGEKGYGHLQK-- 153
             S R   E ED  ++E     + R L      +++ R+  L + N+L   +  + HL++  
Sbjct:   564 SKRLSKEIEDRLDRESEYLEKQRQLENQRNRINLLREEALTQQNQLQGDQDKFNHLKRGL 623

Query:   154 LQKMLRMRQQFMISQVSFLYPVKILVGPKQEQEL-----ESFPSG--NRSGNSAASKPVN 206
             + + + +    +    SF   +K     K + +L      S+     N      +  P+ 
Sbjct:   624 VPRSVALTNAGIQFYKSFRQLIKSTEVLKMDTQLLRNLKVSWEKKKWNLITQIRSIYPIG 683

Query:   207 PGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLG 266
              G+  +L ++   LP +  + F D++++   ATALGY+ H++ L + YL++PLRYP+   
Sbjct:   684 QGN-KMLTINSLPLPNSDYNGF-DEEQI---ATALGYVCHILHLASKYLDIPLRYPMTPM 738

Query:   267 GSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNK 321
             GS ++I D              I+  +++K   FPL+ +G +     YAVF LNK
Sbjct:   739 GSRSFIKD-------------EISHHSSSK---FPLYSKGVEKKIFDYAVFFLNK 777

GO:0010508 "positive regulation of autophagy" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038844001 SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (345 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	352
pfam10186	307	pfam10186, Atg14, UV radiation resistance protein	0.002

>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and autophagy-related subunit 14

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 52/273 (19%), Positives = 107/273 (39%), Gaps = 65/273 (23%)

Query: 44  LSSALSQADDKKQTLQQKLQ--------SLIQVKAESLKRSNELEEMRERLEARRLLMEK 95
           L  A ++ D K      KL+        + I+ +   LK   E+E+ RER+E  +  + +
Sbjct: 47  LEGATNE-DGKLAADLLKLEVARKKERLNQIRARISQLKE--EIEQKRERIEELKRALAQ 103

Query: 96  MSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQ 155
              RS +     + ++ R S       +      + R R +              L  L 
Sbjct: 104 R--RSDLSSASYQLEKRRASQ------LEKLQDEIKRTRSK--------------LNALH 141

Query: 156 KMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGL 215
            +L  ++ F+  +++ L+P++ ++  ++                ++S+P   G + ++ L
Sbjct: 142 SLLAEKRSFLCRELAKLFPLRRVIRGRK--------------GDSSSEPYTIGGVPLVDL 187

Query: 216 H-LTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYIND 274
             L  LP           EV   + +LGY+A +++L++ YL + L   + L  S    + 
Sbjct: 188 RDLNSLP----------PEVI--SASLGYMAQLLNLVSHYLSIRLPAEITLPCS----DY 231

Query: 275 YAPSIEP-TSDLSSNIALSTNTKPAEFPLFLEG 306
             P+I      +   +   +   P  +  F EG
Sbjct: 232 PQPTIYSPPLFIDRPLPKLSKEDPETYSDFQEG 264

The Atg14 or Apg14 proteins are hydrophilic proteins with a predicted molecular mass of 40.5 kDa, and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole. Subcellular fractionation indicate that Apg14p and Apg6p are peripherally associated with a membrane structure(s). Apg14p was co-immunoprecipitated with Apg6p, suggesting that they form a stable protein complex. These results imply that Apg6/Vps30p has two distinct functions: in the autophagic process and in the vacuolar protein sorting pathway. Apg14p may be a component specifically required for the function of Apg6/Vps30p through the autophagic pathway. There are 17 auto-phagosomal component proteins which are categorized into six functional units, one of which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The AS-PI3K complex and the Atg2-Atg18 complex are essential for nucleation, and the specific function of the AS-PI3K apparently is to produce phosphatidylinositol 3-phosphate (PtdIns(3)P) at the pre-autophagosomal structure (PAS). The localisation of this complex at the PAS is controlled by Atg14. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. This effect seems to be mediated through direct interaction of the human Atg14 with Beclin 1 in the human phosphatidylinositol 3-kinase class III complex. Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
PF10186	302	Atg14: UV radiation resistance protein and autopha	100.0
KOG2896	377	consensus UV radiation resistance associated prote	99.97
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	99.02
KOG4398	359	consensus Predicted coiled-coil protein [General f	98.83
KOG2751	447	consensus Beclin-like protein [Signal transduction	98.08
PRK11637	428	AmiB activator; Provisional	92.82
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.46
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.84
PF10392	132	COG5: Golgi transport complex subunit 5; InterPro:	88.83
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	88.71
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	88.67
PRK10869	553	recombination and repair protein; Provisional	88.5
PRK09343	121	prefoldin subunit beta; Provisional	88.4
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	87.89
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	87.37
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	87.11
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	86.52
PLN03094	370	Substrate binding subunit of ER-derived-lipid tran	85.5
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	83.72
COG4942	420	Membrane-bound metallopeptidase [Cell division and	83.51
PF06248	593	Zw10: Centromere/kinetochore Zw10; InterPro: IPR00	83.39
PRK09039	343	hypothetical protein; Validated	82.95
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	82.26
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	82.2
PF13805	271	Pil1: Eisosome component PIL1; PDB: 3PLT_B.	81.85
PRK12704	520	phosphodiesterase; Provisional	81.28
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	80.37

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=100.00  E-value=1.3e-40  Score=316.83  Aligned_cols=251  Identities=29%  Similarity=0.449  Sum_probs=190.7

Q ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 018690           40 RLWSLSSALSQADDKKQTLQQKLQSLIQ-----VKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL  114 (352)
Q Consensus        40 rL~~L~~~iqda~~~~~~L~~qI~~~L~-----~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL  114 (352)
                      ||.++..+|+++.+.++.|.++|+++|+     ..........++.+++.++...+..++..+.+.+..++.+.+.++.|
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999     65566667778888888888888888887777777777777777777


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHhhhccceeeCCCCcccccccCCCCC
Q 018690          115 SMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGN  194 (352)
Q Consensus       115 ~~~i~~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~l~~qL~~IYPI~~~~~~~~~~~~~~~~~~~  194 (352)
                      ..+...+.............+.+....+...  ...+..++.++..+|..+|.+|..||||+++..+.          ..
T Consensus       101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~----------~~  168 (302)
T PF10186_consen  101 EQRRSRLSASQDLVESRQEQLEELQNELEER--KQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPR----------RP  168 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCceeecccc----------cC
Confidence            7777766622222223333333333333221  24566799999999999999999999999872110          00


Q ss_pred             CCCCCCCCCCCCCCceEEeceecCCCccccccCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCCCcceeecCCcceeec
Q 018690          195 RSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYIND  274 (352)
Q Consensus       195 ~~g~~~~~~~~~~~~~tI~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGyvAhlv~lls~YL~VpLpYPi~~~gSrSyI~D  274 (352)
                              .+..+..|+|||++||+..     .|...++ +.++||||||||+|.|+|+||+|||||||.+.||+|+|.|
T Consensus       169 --------~~~~~~~~~I~~~~lp~~~-----~~~~~~~-~~isaALgyvahlv~lls~yL~v~Lpy~i~~~gs~s~i~d  234 (302)
T PF10186_consen  169 --------SDSSSSEYTICGLPLPNSR-----DFNSLPD-EEISAALGYVAHLVSLLSRYLGVPLPYPITPSGSRSTIID  234 (302)
T ss_pred             --------CCCCCCCeeecCcccCCCc-----ccccCCH-HHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCccccchhh
Confidence                    0011469999999999963     2333333 5799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccccCCCCCcccCCccCCCchhhHHHHHHHHHHHHHHHHhhcC
Q 018690          275 YAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKVFFIYMLSSD  331 (352)
Q Consensus       275 ~i~~~~~ss~~~~~~~~~~~~~~r~fPLy~~g~d~~rFeYaVfLLNKnI~~L~~sq~  331 (352)
                       .++              ....+..++.+.++.+..+|+||||||||||+|||++||
T Consensus       235 -~~~--------------~~~~~~~~~~~~~~~~~~~f~~~v~lLn~nI~~L~~~q~  276 (302)
T PF10186_consen  235 -FSP--------------SIDRPLPSLSYESGVDRQRFEYAVFLLNKNIAQLCFSQG  276 (302)
T ss_pred             -ccc--------------ccCCcchhhhccccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence             321              122344455555577899999999999999999999988

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]

Probab=99.97  E-value=5.2e-30  Score=249.22  Aligned_cols=106  Identities=43%  Similarity=0.732  Sum_probs=93.3

Q ss_pred             CCceEEeceecCCCccccccCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCCCcceeecCCcceeecCCCCCCCCCccc
Q 018690          207 PGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLS  286 (352)
Q Consensus       207 ~~~~tI~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGyvAhlv~lls~YL~VpLpYPi~~~gSrSyI~D~i~~~~~ss~~~  286 (352)
                      ...|||||++||+-.     .|..+++ ..+||||||+||||++||.||.+||||||.+.||+|||.|+++...|     
T Consensus       208 ~~v~tIrGl~lp~~~-----d~~~~s~-~~~aaALGylaHLv~~Is~~L~~pLRYPIl~~~Sks~I~D~i~~~~~-----  276 (377)
T KOG2896|consen  208 HLVFTIRGLKLPFIE-----DKQNKSE-QETAAALGYLAHLVSMISKYLEVPLRYPILLAGSKSYIRDYIPDIET-----  276 (377)
T ss_pred             hhhhhhhcccCCchh-----hhhccch-HHHHHHHHHHHHHHHHHHHHhccccccccccccccceecccCCcccc-----
Confidence            467999999999964     2223434 47999999999999999999999999999999999999999987642     


Q ss_pred             ccccccCCCCCcccCCccCCCchhhHHHHHHHHHHHHHHHHhhcCc
Q 018690          287 SNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKVFFIYMLSSDQ  332 (352)
Q Consensus       287 ~~~~~~~~~~~r~fPLy~~g~d~~rFeYaVfLLNKnI~~L~~sq~~  332 (352)
                               ..|+||||.++++..+|+||+|||||||++||++.|.
T Consensus       277 ---------ttr~fply~k~~~~e~f~~glylL~qNiaqlr~~~gl  313 (377)
T KOG2896|consen  277 ---------TTREFPLYTKSQEIEQFEYGLYLLNQNIAQLRYDCGL  313 (377)
T ss_pred             ---------ccccccCccccchHHHHHHHHHHHhccHHHHHHHcCC
Confidence                     2799999999999999999999999999999988775

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=99.02  E-value=5.7e-08  Score=95.45  Aligned_cols=96  Identities=24%  Similarity=0.277  Sum_probs=65.3

Q ss_pred             ceEEeceecCCCccccccCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeecCCCCCCCCCcccc
Q 018690          209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS  287 (352)
Q Consensus       209 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGyvAhlv~lls~YL~VpL-pYPi~~~gSrSyI~D~i~~~~~ss~~~~  287 (352)
                      .=||+|+.|.-.+...      . +-..|+||+|++|.|+..||..+++.+ .|-|+|.||.|+|.+....         
T Consensus       150 fGTINGlRLGrl~~~~------V-~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs~S~I~~~~~~---------  213 (314)
T PF04111_consen  150 FGTINGLRLGRLPNVP------V-EWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMGSFSKIEKLEGD---------  213 (314)
T ss_dssp             EEEETTEEE--BTTB----------HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--GGG-EEEECS-----------
T ss_pred             eeeECCeeeccCCCCC------C-ChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEecCCCCEEEEeccC---------
Confidence            3489999997654211      1 223599999999999999999999986 5999999999999998631         


Q ss_pred             cccccCCCCCcccCCccCCC-------chhhHHHHHHHHHHHHHHHH
Q 018690          288 NIALSTNTKPAEFPLFLEGQ-------DATRAAYAVFLLNKVFFIYM  327 (352)
Q Consensus       288 ~~~~~~~~~~r~fPLy~~g~-------d~~rFeYaVfLLNKnI~~L~  327 (352)
                             .....||||..+.       ...+|+-|+--+=.-+.+++
T Consensus       214 -------~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~  253 (314)
T PF04111_consen  214 -------KDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLA  253 (314)
T ss_dssp             --------TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHH
Confidence                   1357999998864       24699999988888888777

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]

Probab=98.83  E-value=9.9e-08  Score=91.10  Aligned_cols=77  Identities=19%  Similarity=0.113  Sum_probs=62.6

Q ss_pred             HHHHhHhhHHHHHHHHHHHHcCCCCCcceeecCCcceeecCCCCCCCCCcccccccccCCCCCcccCCccCCCchhhHHH
Q 018690          235 QRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAY  314 (352)
Q Consensus       235 e~isaALGyvAhlv~lls~YL~VpLpYPi~~~gSrSyI~D~i~~~~~ss~~~~~~~~~~~~~~r~fPLy~~g~d~~rFeY  314 (352)
                      -.+.+||.|++|||++||+||+|.||..|.++       |.+.                           +.=.+..|..
T Consensus       187 y~i~aAltyt~QLv~lLS~ilnvrlP~kl~~~-------dfC~---------------------------e~ltke~f~R  232 (359)
T KOG4398|consen  187 YPIFAALTYTLQLVHLLSVILNVRLPEKLSHH-------DFCI---------------------------ERLTKESFNR  232 (359)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccCCchhhcch-------hHHH---------------------------HHhhHHHHHH
Confidence            36899999999999999999999999998554       3331                           1113679999


Q ss_pred             HHHHHHHHHHHHHhhcC-------ccCCchhchHHHHh
Q 018690          315 AVFLLNKVFFIYMLSSD-------QYCSLTQSQYPLMF  345 (352)
Q Consensus       315 aVfLLNKnI~~L~~sq~-------~~~~l~~~~~~L~~  345 (352)
                      +|.=||-||..||.+||       .-|+|-|++|.+=+
T Consensus       233 ~~s~Ln~nIiYLc~~q~v~l~~L~~~htl~NLial~s~  270 (359)
T KOG4398|consen  233 DWSTLNDNIIYLCIFQGVSLTKLKYTHTLHNLIALASF  270 (359)
T ss_pred             HHHHHhhhHHHHHHHhccchhhccccchHHHHHHHhhh
Confidence            99999999999999998       37788888877643

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=98.08  E-value=0.00072  Score=68.52  Aligned_cols=92  Identities=26%  Similarity=0.355  Sum_probs=68.9

Q ss_pred             EEeceecCCCccccccCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeecCCCCCCCCCcccccc
Q 018690          211 TILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSSNI  289 (352)
Q Consensus       211 tI~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGyvAhlv~lls~YL~VpL-pYPi~~~gSrSyI~D~i~~~~~ss~~~~~~  289 (352)
                      ||.|+.|.-.+....    +-   +.|.||+|=++.+++.++.=+|+.. +|-+.|+||+|||.-.-             
T Consensus       285 tIN~FRLG~lp~~pV----ew---~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshSyI~~~~-------------  344 (447)
T KOG2751|consen  285 TINNFRLGRLPSVPV----EW---DEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHSYIKKRM-------------  344 (447)
T ss_pred             ccccceeccccCCCc----CH---HHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchhHHHHhc-------------
Confidence            688888765542211    12   3599999999999999999999876 49999999999998663             


Q ss_pred             cccCCCCCcccCCccCCCc----hhhHHHHHHHHHHHHHHH
Q 018690          290 ALSTNTKPAEFPLFLEGQD----ATRAAYAVFLLNKVFFIY  326 (352)
Q Consensus       290 ~~~~~~~~r~fPLy~~g~d----~~rFeYaVfLLNKnI~~L  326 (352)
                          ...++++|||.-|+-    .++|+-|+-.-=--+.++
T Consensus       345 ----~~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf  381 (447)
T KOG2751|consen  345 ----VNLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQF  381 (447)
T ss_pred             ----cCCCccchhhcCCCceeeeccccCHHHHHHHHHHHHH
Confidence                225789999998763    468888876554444444

>PRK11637 AmiB activator; Provisional

Probab=92.82  E-value=12  Score=38.21  Aligned_cols=42  Identities=14%  Similarity=0.219  Sum_probs=24.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 018690           78 ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR  119 (352)
Q Consensus        78 ~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~  119 (352)
                      .+.+.+.++......++.....+..+.+++..+++.|..+++
T Consensus        90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr  131 (428)
T PRK11637         90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD  131 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555666666666666666666654

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.46  E-value=13  Score=35.23  Aligned_cols=94  Identities=22%  Similarity=0.203  Sum_probs=54.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHH
Q 018690           76 SNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQ  155 (352)
Q Consensus        76 ~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~  155 (352)
                      ...+...+.+++..+..++..+.....+++.+..++..|.............+......+.+.+..+..-      ...-
T Consensus        69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~l  142 (302)
T PF10186_consen   69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQL------QSQL  142 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence            3456666777777777777777778888888888888887333333333344445555555555554321      1122


Q ss_pred             HHHHHHHHHHHHHHhhhccc
Q 018690          156 KMLRMRQQFMISQVSFLYPV  175 (352)
Q Consensus       156 ~~L~~rR~~l~~qL~~IYPI  175 (352)
                      ...+..-...+..+.-|=++
T Consensus       143 ~~~r~~l~~~l~~ifpI~~~  162 (302)
T PF10186_consen  143 ARRRRQLIQELSEIFPIEQV  162 (302)
T ss_pred             HHHHHHHHHHHHHHhCceee
Confidence            22233333446667777555

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.84  E-value=26  Score=34.67  Aligned_cols=123  Identities=22%  Similarity=0.319  Sum_probs=58.7

Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 018690           41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAES-LKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR  119 (352)
Q Consensus        41 L~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~-l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~  119 (352)
                      +..++..+.++......|+.+|..+=+...+. .....++..++.+|......++.    .++...+++.+.+++..++.
T Consensus       172 ~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~----~k~~l~el~~el~~l~~~i~  247 (325)
T PF08317_consen  172 LEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEA----KKKELAELQEELEELEEKIE  247 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            34445555556666666666666554433221 22334555555555555555543    33333444555555555555


Q ss_pred             HHHHHhhHHHHHHHHHHHhHHHhhcccccch--HHHHHHHHHHHHHHHHHHHhhhccceee
Q 018690          120 SLLVAGTALSVARKRLQESNRLLAGEKGYGH--LQKLQKMLRMRQQFMISQVSFLYPVKIL  178 (352)
Q Consensus       120 ~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~--L~~l~~~L~~rR~~l~~qL~~IYPI~~~  178 (352)
                      .+......+   ...+.+++..+..-++...  +..++        .-+..|..+.+++.+
T Consensus       248 ~~~~~k~~l---~~eI~e~~~~~~~~r~~t~~Ev~~Lk--------~~~~~Le~~~gw~~~  297 (325)
T PF08317_consen  248 ELEEQKQEL---LAEIAEAEKIREECRGWTRSEVKRLK--------AKVDALEKLTGWKIV  297 (325)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHH--------HHHHHHHHHHCcEEE
Confidence            444443333   3334444444433222211  22222        235666677777765

>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking

Probab=88.83  E-value=14  Score=31.70  Aligned_cols=93  Identities=17%  Similarity=0.261  Sum_probs=66.2

Q ss_pred             ehhhhHHHHHH--------HhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhhcchHHHHHHHHHHHHHHHHHHhhhh
Q 018690           30 EWEDYDQELAR--------LWSLSSALSQADDKKQTLQQKLQSLIQVKAES-LKRSNELEEMRERLEARRLLMEKMSMRS  100 (352)
Q Consensus        30 ~~~~~~~~L~r--------L~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~-l~~~~~l~e~~~rl~~~~~~~~~~~~~~  100 (352)
                      +-..|-+.+..        =..++..|+......+.+.++|.+++..+.+. +++...+.+++.-+...+..++.+....
T Consensus         9 d~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~   88 (132)
T PF10392_consen    9 DPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSY   88 (132)
T ss_pred             CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555        45667777888888888999999999987755 5667777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 018690          101 KVEKEDAKNQEERLSMEVRSLL  122 (352)
Q Consensus       101 ~~~~~~~~krreeL~~~i~~l~  122 (352)
                      ++++.+|-..-++++.....|.
T Consensus        89 ~RL~~eV~~Py~~~~~~~~~L~  110 (132)
T PF10392_consen   89 ERLRSEVIEPYEKIQKLTSQLE  110 (132)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Confidence            7777777766666666555433

Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=88.71  E-value=14  Score=39.81  Aligned_cols=17  Identities=18%  Similarity=0.235  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018690          153 KLQKMLRMRQQFMISQV  169 (352)
Q Consensus       153 ~l~~~L~~rR~~l~~qL  169 (352)
                      .+...|..+-.++|..+
T Consensus       320 ~~~~~l~~~~~~i~~~~  336 (650)
T TIGR03185       320 LTQEELEERDKELLESL  336 (650)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            35556667777777766

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=88.67  E-value=14  Score=35.49  Aligned_cols=13  Identities=8%  Similarity=-0.199  Sum_probs=7.6

Q ss_pred             CceEEeceecCCC
Q 018690          208 GSLTILGLHLTIL  220 (352)
Q Consensus       208 ~~~tI~Gl~Lp~~  220 (352)
                      ....=|++.||..
T Consensus       198 ~~C~GC~m~l~~~  210 (239)
T COG1579         198 RVCGGCHMKLPSQ  210 (239)
T ss_pred             CcccCCeeeecHH
Confidence            3444567777763

>PRK10869 recombination and repair protein; Provisional

Probab=88.50  E-value=14  Score=39.32  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=18.3

Q ss_pred             CCCCcceeehhhhHHHHHHHhcHHHHHHHHHHH
Q 018690           22 DPENVKVIEWEDYDQELARLWSLSSALSQADDK   54 (352)
Q Consensus        22 ~~~~~~~~~~~~~~~~L~rL~~L~~~iqda~~~   54 (352)
                      +.-+++.-+|+++++...+|.|-+.-.+.+...
T Consensus       198 ~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~  230 (553)
T PRK10869        198 NEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNA  230 (553)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566777777766666655444433333

>PRK09343 prefoldin subunit beta; Provisional

Probab=88.40  E-value=15  Score=31.34  Aligned_cols=97  Identities=21%  Similarity=0.261  Sum_probs=50.0

Q ss_pred             hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh--hcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 018690           32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLK--RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKN  109 (352)
Q Consensus        32 ~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~--~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~k  109 (352)
                      ..+++.+.++-.+..-|+.....+..|..++++.--+..+.-.  ....+=..-.++     .+   +.-...++..+++
T Consensus         7 ~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~v-----lv---~qd~~e~~~~l~~   78 (121)
T PRK09343          7 PEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNL-----LV---KVDKTKVEKELKE   78 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHH-----Hh---hccHHHHHHHHHH
Confidence            3567777777777777777777777777777665544332211  001110000000     01   1123445566666


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018690          110 QEERLSMEVRSLLVAGTALSVARKRLQ  136 (352)
Q Consensus       110 rreeL~~~i~~l~~~~~~l~~a~~~L~  136 (352)
                      +.|-+..+|.++......+...-..++
T Consensus        79 r~E~ie~~ik~lekq~~~l~~~l~e~q  105 (121)
T PRK09343         79 RKELLELRSRTLEKQEKKLREKLKELQ  105 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777666666666555444333333

>TIGR00634 recN DNA repair protein RecN

Probab=87.89  E-value=18  Score=38.35  Aligned_cols=23  Identities=26%  Similarity=0.213  Sum_probs=11.9

Q ss_pred             CcceeehhhhHHHHHHHhcHHHH
Q 018690           25 NVKVIEWEDYDQELARLWSLSSA   47 (352)
Q Consensus        25 ~~~~~~~~~~~~~L~rL~~L~~~   47 (352)
                      +++.-+|++++....+|.|-+.-
T Consensus       205 ~l~~~E~e~L~~e~~~L~n~e~i  227 (563)
T TIGR00634       205 DLQPGEDEALEAEQQRLSNLEKL  227 (563)
T ss_pred             CcCCCcHHHHHHHHHHHhCHHHH
Confidence            34445556666555555554433

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.37  E-value=19  Score=34.12  Aligned_cols=75  Identities=13%  Similarity=0.147  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018690           45 SSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA  124 (352)
Q Consensus        45 ~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~  124 (352)
                      .+..++........+.+|+.+-+......   .++..++.+++..+.+..    +.++...+.++..++|+.++..+...
T Consensus        27 ~~~~~~~~~~~~~sQ~~id~~~~e~~~L~---~e~~~l~~e~e~L~~~~~----~l~~~v~~q~~el~~L~~qi~~~~~~   99 (251)
T PF11932_consen   27 QQVQQQWVQAAQQSQKRIDQWDDEKQELL---AEYRQLEREIENLEVYNE----QLERQVASQEQELASLEQQIEQIEET   99 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555666666666666554332   233333333333333332    23344445555555666666555444


Q ss_pred             hh
Q 018690          125 GT  126 (352)
Q Consensus       125 ~~  126 (352)
                      ..
T Consensus       100 ~~  101 (251)
T PF11932_consen  100 RQ  101 (251)
T ss_pred             HH
Confidence            43

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=87.11  E-value=53  Score=36.25  Aligned_cols=27  Identities=41%  Similarity=0.576  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018690           45 SSALSQADDKKQTLQQKLQSLIQVKAE   71 (352)
Q Consensus        45 ~~~iqda~~~~~~L~~qI~~~L~~~~~   71 (352)
                      ..+|++.+.+.+.|+.+|..+...++.
T Consensus       459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~  485 (697)
T PF09726_consen  459 KSELSQLRQENEQLQNKLQNLVQARQQ  485 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344777777777777777777766653

; GO: 0016021 integral to membrane

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.52  E-value=11  Score=36.78  Aligned_cols=82  Identities=21%  Similarity=0.342  Sum_probs=55.2

Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 018690           41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS  120 (352)
Q Consensus        41 L~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~  120 (352)
                      +.+=++.|.++...+..++.+|+++...-.+   .-+..++.+.++...+..+......++.+++.+..|.+-|..+.|+
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~---~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA  109 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEE---IQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA  109 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566666666666666665553321   2344566666777777777777888889999999999999999986


Q ss_pred             HHHHh
Q 018690          121 LLVAG  125 (352)
Q Consensus       121 l~~~~  125 (352)
                      +-..|
T Consensus       110 mq~nG  114 (265)
T COG3883         110 MQVNG  114 (265)
T ss_pred             HHHcC
Confidence            55443

>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional

Probab=85.50  E-value=32  Score=35.10  Aligned_cols=16  Identities=13%  Similarity=0.046  Sum_probs=13.9

Q ss_pred             eeehhhhHHHHHHHhc
Q 018690           28 VIEWEDYDQELARLWS   43 (352)
Q Consensus        28 ~~~~~~~~~~L~rL~~   43 (352)
                      -++|+++-.++.||.+
T Consensus       226 ~vsld~L~~~ltrL~~  241 (370)
T PLN03094        226 GVSLDELVGICTRLAR  241 (370)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            3889999999999877

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=83.72  E-value=73  Score=37.75  Aligned_cols=86  Identities=9%  Similarity=0.108  Sum_probs=37.4

Q ss_pred             hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 018690           31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQ  110 (352)
Q Consensus        31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~kr  110 (352)
                      +++|+..|..|+..-..+..|.......+++++.+-+...   ....++.+++.++..+...+..+........+++..+
T Consensus       853 L~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~---~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~  929 (1353)
T TIGR02680       853 LKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAR---EAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRAR  929 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666655555444455555555555555444333221   1222333333333333334333333333334444444


Q ss_pred             HHHHHHHHH
Q 018690          111 EERLSMEVR  119 (352)
Q Consensus       111 reeL~~~i~  119 (352)
                      .+++..++.
T Consensus       930 L~e~r~rL~  938 (1353)
T TIGR02680       930 LAETRAALA  938 (1353)
T ss_pred             HHHHHHHHH
Confidence            444444443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=83.51  E-value=22  Score=36.81  Aligned_cols=29  Identities=17%  Similarity=0.072  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccceeeC
Q 018690          151 LQKLQKMLRMRQQFMISQVSFLYPVKILV  179 (352)
Q Consensus       151 L~~l~~~L~~rR~~l~~qL~~IYPI~~~~  179 (352)
                      |..++.+-+.+|.++...|+.+|--...+
T Consensus       103 l~~l~~q~r~qr~~La~~L~A~~r~g~~p  131 (420)
T COG4942         103 LNALEVQEREQRRRLAEQLAALQRSGRNP  131 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            44455566889999999999999765543

>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells

Probab=83.39  E-value=57  Score=34.85  Aligned_cols=47  Identities=19%  Similarity=0.070  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHhHHHhhcc--cc---cchHHHHHHHHHHHHHHHHHHHhhhc
Q 018690          127 ALSVARKRLQESNRLLAGE--KG---YGHLQKLQKMLRMRQQFMISQVSFLY  173 (352)
Q Consensus       127 ~l~~a~~~L~ea~~~L~~e--~~---~~~L~~l~~~L~~rR~~l~~qL~~IY  173 (352)
                      .+-+|-..|.+++..|...  .+   ..-++.+...+...|..+...|...|
T Consensus       123 ~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w  174 (593)
T PF06248_consen  123 NYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEW  174 (593)
T ss_pred             CHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777777777642  11   12367888899999999999997666

These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus

>PRK09039 hypothetical protein; Validated

Probab=82.95  E-value=54  Score=32.84  Aligned_cols=17  Identities=6%  Similarity=0.034  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHhhhc
Q 018690          157 MLRMRQQFMISQVSFLY  173 (352)
Q Consensus       157 ~L~~rR~~l~~qL~~IY  173 (352)
                      .|..-|......|..+.
T Consensus       191 ~l~~~~~~~~~~l~~~~  207 (343)
T PRK09039        191 ELNRYRSEFFGRLREIL  207 (343)
T ss_pred             HHHHhHHHHHHHHHHHh
Confidence            44555555555554443

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=82.26  E-value=39  Score=36.26  Aligned_cols=81  Identities=25%  Similarity=0.248  Sum_probs=48.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018690           43 SLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL  122 (352)
Q Consensus        43 ~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~  122 (352)
                      .+.+.|.+|....+....+|+.+++... .  .-+++++.++|+...+.....    .....+++-...++++.++..+.
T Consensus       266 ~~~~~l~ea~~~l~ea~~el~~~~~~le-~--Dp~~L~~ve~Rl~~L~~l~RK----Y~~~~~~l~~~~~~~~~el~~L~  338 (557)
T COG0497         266 ELAELLEEALYELEEASEELRAYLDELE-F--DPNRLEEVEERLFALKSLARK----YGVTIEDLLEYLDKIKEELAQLD  338 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC-C--CHHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHhh
Confidence            3455667777777777777777777542 1  335677777777765554433    33334566666677777776555


Q ss_pred             HHhhHHHH
Q 018690          123 VAGTALSV  130 (352)
Q Consensus       123 ~~~~~l~~  130 (352)
                      ..-..+..
T Consensus       339 ~~~~~~~~  346 (557)
T COG0497         339 NSEESLEA  346 (557)
T ss_pred             hhhhHHHH
Confidence            55443333

>TIGR01069 mutS2 MutS2 family protein

Probab=82.20  E-value=53  Score=36.57  Aligned_cols=75  Identities=24%  Similarity=0.286  Sum_probs=42.1

Q ss_pred             HHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 018690           36 QELARLWSLSSA-LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEER  113 (352)
Q Consensus        36 ~~L~rL~~L~~~-iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krree  113 (352)
                      -.+++...|... |+.|..-......+++.+|+.-.+   ...++++..+.++..+..++..+.+.+...+++++++++
T Consensus       486 ~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~---~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~  561 (771)
T TIGR01069       486 FEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSA---LEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN  561 (771)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347777777655 677888888888889988886532   233444444444444444443333333333333333333

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B

Probab=81.85  E-value=42  Score=32.83  Aligned_cols=58  Identities=17%  Similarity=0.308  Sum_probs=42.5

Q ss_pred             ehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHH
Q 018690           30 EWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRL   91 (352)
Q Consensus        30 ~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~   91 (352)
                      .+++++..|-.+-|.+++|+.....+++|..+|..+-..  ++  ....+.++++.|..++.
T Consensus       122 ~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k--~P--~s~kl~~LeqELvraEa  179 (271)
T PF13805_consen  122 RLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYK--DP--QSPKLVVLEQELVRAEA  179 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T--TTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhc--CC--CChHHHHHHHHHHHHHH
Confidence            467888889999999999999999999999999875332  23  23456666666644333

>PRK12704 phosphodiesterase; Provisional

Probab=81.28  E-value=79  Score=33.59  Aligned_cols=11  Identities=18%  Similarity=0.108  Sum_probs=5.0

Q ss_pred             hHHHHHHHHHH
Q 018690          311 RAAYAVFLLNK  321 (352)
Q Consensus       311 rFeYaVfLLNK  321 (352)
                      ....|..+|.+
T Consensus       382 H~~iGa~il~~  392 (520)
T PRK12704        382 HVEIGAELAKK  392 (520)
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=80.37  E-value=45  Score=38.85  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=14.3

Q ss_pred             hhHHHHHHHhcHHHHHHHHHHHHHH
Q 018690           33 DYDQELARLWSLSSALSQADDKKQT   57 (352)
Q Consensus        33 ~~~~~L~rL~~L~~~iqda~~~~~~   57 (352)
                      +++..+.+|.|.+..|+.+.-.+.+
T Consensus      1519 ~I~e~v~sL~nVd~IL~~T~~di~r 1543 (1758)
T KOG0994|consen 1519 EIQERVASLPNVDAILSRTKGDIAR 1543 (1758)
T ss_pred             HHHHHHHhcccHHHHHHhhhhhHHH
Confidence            4555566666666666655444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 45/379 (11%), Positives = 113/379 (29%), Gaps = 99/379 (26%)

Query: 21  IDPENVKVIEWEDYDQELARLWSLSSALSQAD----DKKQTLQQKLQSLI---------- 66
             P     +    Y ++  RL++ +   ++ +         L+Q L  L           
Sbjct: 103 RQPS----MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 67  -----QVKAESLKRSNELEEMRERLEARRLLMEK----MSMRSKVEKEDAKNQEERLSME 117
                   A  +  S +++            M+     +++++    E      ++L  +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCK----------MDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 118 VRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKI 177
           +     + +  S   K    S +            +L+++L+ +           Y   +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQ-----------AELRRLLKSKP----------YENCL 247

Query: 178 LV--GPKQEQELESFPSGNR----SGNSAASKPVNPGSLTILGLHLTILPFTK---MSLF 228
           LV    +  +   +F    +    +     +  ++  + T + L    +  T     SL 
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 229 -----TDKKEVQRSATALGYIAHVVSLIASYL-EVPLRYPLRLGGSHTYINDYAPSIEPT 282
                   +++ R           +S+IA  + +    +            D    +   
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATW------------DNWKHVN-C 352

Query: 283 SDLSSNIALSTNT-KPAE-------FPLFLEGQDATRAAYAVFLLNKVFFIYMLSSDQYC 334
             L++ I  S N  +PAE         +F           ++   + +    M+  ++  
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 335 --SLTQSQYPLMFSYYLQD 351
             SL + Q P   +  +  
Sbjct: 413 KYSLVEKQ-PKESTISIPS 430

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 51/329 (15%), Positives = 99/329 (30%), Gaps = 98/329 (29%)

Query: 19  KAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNE 78
              +P  + +I  E     LA  W         D+ K     KL ++I+     L    E
Sbjct: 323 LTTNPRRLSII-AESIRDGLAT-W---------DNWKHVNCDKLTTIIESSLNVL----E 367

Query: 79  LEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSM--------EVRSLLVAGTALSV 130
             E R+  +   +               A      LS+        +V  ++      S+
Sbjct: 368 PAEYRKMFDRLSVFP-----------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 131 ARKRLQESNRLLAGEKGYG-HLQKLQKMLRMRQ--QFMISQVSFLYPVKILVGPKQEQEL 187
             K+ +ES   +        +L+   K+       + ++      Y              
Sbjct: 417 VEKQPKESTISI-----PSIYLELKVKLENEYALHRSIVDH----Y-----------NIP 456

Query: 188 ESFPSGNRSGNSAASKPVNPG-SLTILGLHL-TILPFTKMSLFTD--------KKEVQRS 237
           ++F S +         P       + +G HL  I    +M+LF          +++++  
Sbjct: 457 KTFDSDDL------IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 238 ATALGYIAHVVSLIASYLEVPLR-YPLRLGGSHTYINDYAPSIEP-TSDL-------SSN 288
           +TA      +++ +       L+ Y         YI D  P  E   + +         N
Sbjct: 511 STAWNASGSILNTLQQ-----LKFY-------KPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 289 IALSTNTKPAEFPLFLEG----QDATRAA 313
           +  S  T      L  E     ++A +  
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 2/136 (1%)

Query: 36   QELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEK 95
             E   +          ++K   LQ+K+    +     L++ N LE        +     +
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 96   MSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG--EKGYGHLQK 153
                S+ E ++A N+   L  E+  L          +K ++E         E+    L++
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030

Query: 154  LQKMLRMRQQFMISQV 169
               +L+  ++ +  ++
Sbjct: 1031 QNTLLKTEKEELNRRI 1046

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.4 bits (91), Expect = 6e-04
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 25/92 (27%)

Query: 22  DPENVKVIEW-EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELE 80
           +PE+++  +W E+  + L  L           D     +   Q   + KA+      +LE
Sbjct: 83  EPESIR--KWREEQRKRLQEL-----------DAAS--KVMEQEWRE-KAK-----KDLE 121

Query: 81  EMRERLEARRLLMEKMSMRSKVEKEDAKNQEE 112
           E  +R   +   +EK  + +++  +    Q +
Sbjct: 122 EWNQRQSEQ---VEKNKINNRIADKAFYQQPD 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
4ddp_A	210	Beclin-1; ECD, autophagy, membrane binding, membra	98.8
3vp7_A	220	Vacuolar protein sorting-associated protein 30; ta	98.57
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	85.99
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	85.49
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	85.45
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	84.2
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	81.42
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	80.72

>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}

Probab=98.80  E-value=1.6e-08  Score=92.47  Aligned_cols=95  Identities=21%  Similarity=0.286  Sum_probs=77.4

Q ss_pred             ceEEeceecCCCccccccCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeecCCCCCCCCCcccc
Q 018690          209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS  287 (352)
Q Consensus       209 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGyvAhlv~lls~YL~VpL-pYPi~~~gSrSyI~D~i~~~~~ss~~~~  287 (352)
                      .=||.|+.|.-.+....    +=   ..|+||+|++|.|+..||.+|++.+ +|.|.|.||+|+|.+...          
T Consensus        42 fgtINglRLGrlp~~~V----~W---~EINAAwGq~~LLL~tla~~l~~~f~~y~L~P~GS~S~I~~~~~----------  104 (210)
T 4ddp_A           42 FGTINNFRLGRLPSVPV----EW---NEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTD----------  104 (210)
T ss_dssp             EEEETTEECCCBTTBCC----CH---HHHHHHHHHHHHHHHHHHHHHTCCCSSEEEECCGGGCEEEESSC----------
T ss_pred             ceeEcccccCCCCCCCC----CH---HHHHHHHHHHHHHHHHHHHHcCCCccceeEEecCCcceeeEecC----------
Confidence            44899999987653211    22   3599999999999999999999999 799999999999988642          


Q ss_pred             cccccCCCCCcccCCccCCCc----hhhHHHHHHHHHHHHHHHHh
Q 018690          288 NIALSTNTKPAEFPLFLEGQD----ATRAAYAVFLLNKVFFIYML  328 (352)
Q Consensus       288 ~~~~~~~~~~r~fPLy~~g~d----~~rFeYaVfLLNKnI~~L~~  328 (352)
                              ....||||..|.-    ..+|+-|+--+-.-+.|++.
T Consensus       105 --------~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~  141 (210)
T 4ddp_A          105 --------KSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKE  141 (210)
T ss_dssp             --------TTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred             --------CCeEEeceeCCCccccccccccHHHHHHHHHHHHHHH
Confidence                    2358999987643    36999999999999999884

>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}

Probab=98.57  E-value=1.3e-07  Score=87.10  Aligned_cols=108  Identities=19%  Similarity=0.221  Sum_probs=75.2

Q ss_pred             ceEEeceecCCCccccccCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeecCCC-CCCCCCccc
Q 018690          209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAP-SIEPTSDLS  286 (352)
Q Consensus       209 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~e~isaALGyvAhlv~lls~YL~VpL-pYPi~~~gSrSyI~D~i~-~~~~ss~~~  286 (352)
                      .=||.|+.|.-.+....    +=   ..|+||+|++|.|+..||..|++.+ .|.|.|.||.|+|.+... ..+- ...+
T Consensus        16 fgTINglRLGrl~~~~V----~W---~EINAAwGq~~LLL~tla~kl~~~f~~Y~L~PmGS~S~I~~~~~~~~~~-~~~~   87 (220)
T 3vp7_A           16 FATINGLRLGSIPESVV----PW---KEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNSVEY-NNST   87 (220)
T ss_dssp             EEEETTEEECCBTTBCC----CH---HHHHHHHHHHHHHHHHHHHHTTCCCSSEEEECCGGGCEEEEEC-----------
T ss_pred             ceeEcccccCCCCCCCC----CH---HHHHHHHHHHHHHHHHHHHHhCCCcccceEEeCCCcceEeecccccccc-cccc
Confidence            44899999987652211    22   3599999999999999999999999 599999999999999431 1100 0000


Q ss_pred             ccccccCCCCCcccCCccCCC--------chhhHHHHHHHHHHHHHHHHh
Q 018690          287 SNIALSTNTKPAEFPLFLEGQ--------DATRAAYAVFLLNKVFFIYML  328 (352)
Q Consensus       287 ~~~~~~~~~~~r~fPLy~~g~--------d~~rFeYaVfLLNKnI~~L~~  328 (352)
                      .    ........||||..+.        -..+|+-|+--+=.-|.|++.
T Consensus        88 ~----~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~  133 (220)
T 3vp7_A           88 T----NAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITR  133 (220)
T ss_dssp             ---------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHH
T ss_pred             c----ccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHH
Confidence            0    0012346899999864        135999999888888888875

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=85.99  E-value=9.5  Score=47.01  Aligned_cols=92  Identities=13%  Similarity=0.183  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccc-cchHHHHHH
Q 018690           78 ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG-YGHLQKLQK  156 (352)
Q Consensus        78 ~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~~e~~-~~~L~~l~~  156 (352)
                      ++++++++++.++..+.+.+..++.+.+.+.+=+++....++........++.++.+|.-|..++.+..+ +.|=.....
T Consensus      2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A         2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence            4555555555555555554444433333333333333333333333344566777788888777654322 133333344


Q ss_pred             HHHHHHHHHHHHH
Q 018690          157 MLRMRQQFMISQV  169 (352)
Q Consensus       157 ~L~~rR~~l~~qL  169 (352)
                      .+..+...++.++
T Consensus      2095 ~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A         2095 NFNTQMSTVVGDV 2107 (3245)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHH
Confidence            5555566666654

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=85.49  E-value=14  Score=30.32  Aligned_cols=100  Identities=18%  Similarity=0.238  Sum_probs=48.1

Q ss_pred             eehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 018690           29 IEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAK  108 (352)
Q Consensus        29 ~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~  108 (352)
                      =+|+-++..+..   |..-+..+...+..|+..++..-+.      .+..+.++..+++.....+.+++...       .
T Consensus         6 ~~~~~lq~~~~q---l~~qL~k~~~~r~~Le~~w~~k~E~------~k~qV~~L~~~~q~sE~~L~~Lqq~f-------s   69 (112)
T 1x79_B            6 DQVKKLQLMLRQ---ANDQLEKTMKDKQELEDFIKQSSED------SSHQISALVLRAQASEILLEELQQGL-------S   69 (112)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence            368888888844   3445555556666666664443332      35667777777777776665544444       3


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHhhc
Q 018690          109 NQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG  144 (352)
Q Consensus       109 krreeL~~~i~~l~~~~~~l~~a~~~L~ea~~~L~~  144 (352)
                      .-+.+.+..+..|....+.+...-.+|+..++-|.|
T Consensus        70 q~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G  105 (112)
T 1x79_B           70 QAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQG  105 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence            333344444444444444444444455555555554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=85.45  E-value=16  Score=45.18  Aligned_cols=12  Identities=17%  Similarity=0.553  Sum_probs=8.8

Q ss_pred             CCcccCCccCCC
Q 018690          296 KPAEFPLFLEGQ  307 (352)
Q Consensus       296 ~~r~fPLy~~g~  307 (352)
                      ..+.|||..|-+
T Consensus      2182 ~~~R~PLlIDPq 2193 (3245)
T 3vkg_A         2182 RFNRYPLVIDPS 2193 (3245)
T ss_dssp             SCSSCEEEECTT
T ss_pred             cCCCceEEEChH
Confidence            457899998843

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=84.20  E-value=7.7  Score=29.72  Aligned_cols=32  Identities=19%  Similarity=0.326  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHhHHhhhhcchHHHHHHHHH
Q 018690           56 QTLQQKLQSLIQVKAESLKRSNELEEMRERLE   87 (352)
Q Consensus        56 ~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~   87 (352)
                      .....+++.+|..+.+.+.++|++..++..|=
T Consensus         5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI   36 (77)
T 2w83_C            5 EFMGREVENLILENTQLLETKNALNIVKNDLI   36 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999888888888877766553

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=81.42  E-value=26  Score=34.23  Aligned_cols=68  Identities=9%  Similarity=0.098  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 018690           51 ADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV  118 (352)
Q Consensus        51 a~~~~~~L~~qI~~~L~~~~~~l~~~~~l~e~~~rl~~~~~~~~~~~~~~~~~~~~~~krreeL~~~i  118 (352)
                      ..+..+.++.+|+.+|+......+..+-...++++|...++-..++.++.-..+..|..=.+.|..++
T Consensus       371 ~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (471)
T 3mq9_A          371 VDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEK  438 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence            45556677777777777665444445555666666666666666555555444444444334443333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=80.72  E-value=33  Score=31.20  Aligned_cols=12  Identities=0%  Similarity=0.271  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHH
Q 018690          156 KMLRMRQQFMIS  167 (352)
Q Consensus       156 ~~L~~rR~~l~~  167 (352)
                      ..+...|..+..
T Consensus       160 ~~l~~~r~~l~~  171 (256)
T 3na7_A          160 QIIFKKKEDLVE  171 (256)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            334455555555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00